AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052926


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052926.t1 MTR_3g088885 96.429 448 16 0 1 448 1 448 0.0 896
MS.gene052926.t1 MTR_1g029520 81.628 430 71 6 25 447 254 682 0.0 705
MS.gene052926.t1 MTR_5g047260 55.663 415 171 5 8 421 16 418 3.09e-155 447
MS.gene052926.t1 MTR_7g022470 52.715 442 196 6 9 447 10 441 5.57e-155 447
MS.gene052926.t1 MTR_7g028050 48.984 443 213 7 9 446 1 435 8.12e-141 410
MS.gene052926.t1 MTR_4g101950 49.161 417 191 6 6 421 3 399 7.54e-132 387
MS.gene052926.t1 MTR_5g011580 45.657 449 217 7 6 447 3 431 1.29e-128 379
MS.gene052926.t1 MTR_5g015170 46.189 433 212 9 1 415 1 430 1.09e-126 376
MS.gene052926.t1 MTR_5g047260 52.941 357 155 5 8 363 16 360 1.87e-122 361
MS.gene052926.t1 MTR_4g097380 42.243 419 231 5 7 415 26 443 1.39e-115 348
MS.gene052926.t1 MTR_5g047260 54.098 305 128 4 8 311 16 309 4.12e-105 315
MS.gene052926.t1 MTR_7g028050 49.398 332 159 6 120 446 5 332 1.46e-99 301
MS.gene052926.t1 MTR_1g012740 50.000 100 44 1 278 377 54 147 4.00e-24 99.0
MS.gene052926.t1 MTR_1g012740 31.333 150 75 5 6 149 7 134 5.68e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052926.t1 AT1G76990 72.907 454 114 4 1 447 1 452 0.0 679
MS.gene052926.t1 AT1G76990 72.907 454 114 4 1 447 1 452 0.0 679
MS.gene052926.t1 AT1G76990 72.907 454 114 4 1 447 1 452 0.0 679
MS.gene052926.t1 AT1G76990 72.907 454 114 4 1 447 1 452 0.0 679
MS.gene052926.t1 AT1G76990 72.907 454 114 4 1 447 1 452 0.0 679
MS.gene052926.t1 AT1G69040 52.164 439 199 5 9 444 7 437 6.34e-149 431
MS.gene052926.t1 AT1G69040 52.164 439 199 5 9 444 11 441 1.13e-148 431
MS.gene052926.t1 AT2G03730 50.000 452 208 8 4 445 3 446 1.81e-144 420
MS.gene052926.t1 AT2G03730 50.000 452 208 8 4 445 3 446 1.81e-144 420
MS.gene052926.t1 AT5G25320 47.682 453 205 9 1 422 1 452 7.59e-144 420
MS.gene052926.t1 AT3G01990 51.724 406 176 8 10 410 17 407 1.08e-135 398
MS.gene052926.t1 AT3G01990 51.724 406 176 8 10 410 17 407 1.08e-135 398
MS.gene052926.t1 AT3G01990 51.724 406 176 8 10 410 3 393 1.55e-135 397
MS.gene052926.t1 AT3G01990 51.724 406 176 8 10 410 3 393 1.55e-135 397
MS.gene052926.t1 AT3G01990 51.724 406 176 8 10 410 17 407 1.70e-135 397
MS.gene052926.t1 AT3G01990 51.724 406 176 8 10 410 3 393 2.34e-135 396
MS.gene052926.t1 AT5G25320 47.343 414 188 7 38 422 1 413 8.58e-128 378
MS.gene052926.t1 AT1G12420 48.077 416 196 8 8 422 6 402 3.74e-121 360
MS.gene052926.t1 AT4G22780 48.507 402 183 7 12 410 9 389 1.09e-120 359
MS.gene052926.t1 AT4G22780 48.507 402 183 7 12 410 9 389 1.09e-120 359
MS.gene052926.t1 AT5G65890 40.645 465 249 7 7 446 8 470 3.06e-110 333
MS.gene052926.t1 AT5G65890 40.645 465 249 7 7 446 8 470 3.06e-110 333
MS.gene052926.t1 AT5G25320 45.845 373 171 8 1 342 1 373 1.53e-108 326
MS.gene052926.t1 AT3G01990 50.437 343 150 8 10 347 17 344 1.52e-106 320
MS.gene052926.t1 AT3G01990 50.437 343 150 8 10 347 3 330 1.74e-106 319
MS.gene052926.t1 AT3G01990 50.888 338 146 8 10 342 17 339 2.53e-106 319
MS.gene052926.t1 AT1G12420 46.552 348 167 7 76 422 1 330 2.30e-93 286
MS.gene052926.t1 AT5G65890 38.571 420 231 7 52 446 1 418 1.11e-90 281
MS.gene052926.t1 AT5G65890 38.571 420 231 7 52 446 1 418 1.11e-90 281
MS.gene052926.t1 AT3G01990 48.896 317 142 8 10 321 17 318 1.66e-87 270
MS.gene052926.t1 AT3G01990 48.896 317 142 8 10 321 3 304 1.88e-87 269
MS.gene052926.t1 AT5G65890 36.994 346 194 6 123 446 13 356 3.18e-69 224

Find 111 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGAATGTCCTCCCTCTTTC+AGG 0.219264 3.1:+72126117 MS.gene052926:CDS
TCTTCACTTCTTCTTTGTTC+TGG 0.235635 3.1:-72125701 None:intergenic
CCAAATGTTGTTTGCTGATC+GGG 0.257041 3.1:+72126061 MS.gene052926:CDS
TAACTTGTTGGAAAGGTTCT+TGG 0.291999 3.1:+72127247 MS.gene052926:CDS
ACCTTTAGGAATACTTTATT+CGG 0.293495 3.1:+72126709 MS.gene052926:intron
GGTGGAGCCGCCTATCAATA+TGG 0.298908 3.1:-72126040 None:intergenic
GCTAAAACTAGCTTCTTCTT+TGG 0.325528 3.1:+72127224 MS.gene052926:CDS
CAGCTACAACCACGTTAAAA+TGG 0.336988 3.1:-72125839 None:intergenic
TCATACTCAGGATCAAAATA+TGG 0.343119 3.1:-72122733 None:intergenic
GTTGGTCAGGCAAATGGGTT+GGG 0.349554 3.1:+72125724 MS.gene052926:CDS
CTTCTTCTTTGGTAACTTGT+TGG 0.350472 3.1:+72127235 MS.gene052926:CDS
ATAGAATGTTGTGAGGAAAA+AGG 0.357579 3.1:+72126152 MS.gene052926:CDS
ACCACTTCCAGTAGAATTCC+AGG 0.366064 3.1:-72124497 None:intergenic
CCCGATCAGCAAACAACATT+TGG 0.373612 3.1:-72126061 None:intergenic
CATATAGCGATTGAGCTAAT+CGG 0.383863 3.1:+72125765 MS.gene052926:CDS
TGAAGAGTTGGTCAGGCAAA+TGG 0.409585 3.1:+72125718 MS.gene052926:CDS
TTAGCCCATCCTCGTGTCTC+TGG 0.409686 3.1:-72127206 None:intergenic
CTGAAGTGTGGACTCATAAC+AGG 0.416112 3.1:+72125859 MS.gene052926:CDS
ATCAGAAGATATGTAAGCTT+TGG 0.416198 3.1:-72124552 None:intergenic
TGAGTTTCACCCATATTGAT+AGG 0.418165 3.1:+72126030 MS.gene052926:CDS
TCTGGTTCTTTGTCATATGT+TGG 0.422147 3.1:-72127188 None:intergenic
CCTTGATTAGTGTACAGTTA+TGG 0.426480 3.1:-72123539 None:intergenic
TCGTACCATCATTGACATAA+AGG 0.431202 3.1:-72125896 None:intergenic
TTCTGATGGAGGATGGTTCA+TGG 0.433562 3.1:+72124568 MS.gene052926:CDS
TTCTATGTGAGGGATGCATC+AGG 0.435247 3.1:+72127086 MS.gene052926:CDS
TTGCTGAAATTCTCATACTC+AGG 0.439597 3.1:-72122745 None:intergenic
GAAGAAGTGAAGAGTTGGTC+AGG 0.440849 3.1:+72125711 MS.gene052926:CDS
GAAGCACTTCGTAAAGAAAT+CGG 0.445977 3.1:+72127134 MS.gene052926:CDS
TTAGAATGGCTGCAGTTTGT+TGG 0.449593 3.1:+72122710 None:intergenic
GGTGAAACTCATGGACAAAC+TGG 0.453115 3.1:-72126018 None:intergenic
AACCATAGATCTCATTGAAA+AGG 0.459867 3.1:+72125469 MS.gene052926:CDS
GATCGGGATTATGAAAGTTA+TGG 0.463149 3.1:+72126077 MS.gene052926:CDS
ATTAAGAGCTTGTTCCCCTC+TGG 0.467903 3.1:-72127060 None:intergenic
AGAATGGCCTAACAGTTTGT+AGG 0.468609 3.1:+72127024 MS.gene052926:CDS
ATACAGAAGGGGAGAAAGAA+AGG 0.470876 3.1:+72126754 MS.gene052926:CDS
GGCCTAACAGTTTGTAGGGC+AGG 0.474532 3.1:+72127029 MS.gene052926:CDS
TCTTTGGTAACTTGTTGGAA+AGG 0.475792 3.1:+72127240 MS.gene052926:CDS
ACCAAATGTTGTTTGCTGAT+CGG 0.476294 3.1:+72126060 MS.gene052926:CDS
TAACAAACCTGGAATTCTAC+TGG 0.480298 3.1:+72124490 MS.gene052926:CDS
ATCAATATGGGTGAAACTCA+TGG 0.480529 3.1:-72126027 None:intergenic
ATATAGCGATTGAGCTAATC+GGG 0.490571 3.1:+72125766 MS.gene052926:CDS
AGTTGGTCAGGCAAATGGGT+TGG 0.499259 3.1:+72125723 MS.gene052926:CDS
ACAAGAATTCTGAGAGAGAA+TGG 0.499775 3.1:+72127008 MS.gene052926:CDS
TGGGTTGGGGTGCATTCTGT+TGG 0.500255 3.1:+72125738 MS.gene052926:CDS
CCATAACTGTACACTAATCA+AGG 0.500495 3.1:+72123539 MS.gene052926:CDS
TACTTTATTCGGCACATGGA+CGG 0.504584 3.1:+72126720 MS.gene052926:CDS
ACAAAGAAGAAGTGAAGAGT+TGG 0.505949 3.1:+72125706 MS.gene052926:CDS
GAAGAGTTGGTCAGGCAAAT+GGG 0.506758 3.1:+72125719 MS.gene052926:CDS
ATGGAGAGAAAGTTGCTAGT+AGG 0.510505 3.1:+72125994 MS.gene052926:CDS
TGATGTACCTGCGATGCATA+AGG 0.510772 3.1:-72126290 None:intergenic
ATCCGATGAGATTGTGGCAT+GGG 0.515862 3.1:-72126264 None:intergenic
ACCTGGAATTCTACTGGAAG+TGG 0.521746 3.1:+72124496 MS.gene052926:CDS
CGTTAAAATGGAGGCTGGCA+AGG 0.523869 3.1:-72125827 None:intergenic
TGTGTCCTTTATGTCAATGA+TGG 0.524064 3.1:+72125891 MS.gene052926:CDS
GTGGAGCCGCCTATCAATAT+GGG 0.526124 3.1:-72126039 None:intergenic
TATCCTTTGCACACAACTCT+AGG 0.530398 3.1:-72126962 None:intergenic
TTTGATAGTGTTAACAAACC+TGG 0.530560 3.1:+72124479 MS.gene052926:CDS
AAGATTAAGGTAAACCTTGG+AGG 0.533637 3.1:-72122778 None:intergenic
GATCAGCAAACAACATTTGG+TGG 0.537075 3.1:-72126058 None:intergenic
ATGGAGTAACGACAACAGAC+AGG 0.537588 3.1:+72126096 MS.gene052926:CDS
AAAGCTTACATATCTTCTGA+TGG 0.539350 3.1:+72124554 MS.gene052926:CDS
GTTGTGTGCAAAGGATAGAG+TGG 0.544908 3.1:+72126968 MS.gene052926:CDS
ACATATCTTCTGATGGAGGA+TGG 0.557362 3.1:+72124561 MS.gene052926:CDS
GAATGGCCTAACAGTTTGTA+GGG 0.559276 3.1:+72127025 MS.gene052926:CDS
TTGTGTGCAAAGGATAGAGT+GGG 0.560363 3.1:+72126969 MS.gene052926:CDS
GATATCTCAGACAAGAGACC+AGG 0.560821 3.1:-72125798 None:intergenic
TTGGTCAGGCAAATGGGTTG+GGG 0.561413 3.1:+72125725 MS.gene052926:CDS
CTCTTAATGTCTTCTATGTG+AGG 0.569159 3.1:+72127075 MS.gene052926:CDS
AAGAACCAGAGACACGAGGA+TGG 0.572425 3.1:+72127201 MS.gene052926:CDS
AGAAATCGGTAAGACAATGA+TGG 0.575183 3.1:+72127148 MS.gene052926:CDS
GCAACAAAATCAACCCTCCA+AGG 0.576070 3.1:+72122764 MS.gene052926:CDS
GGAATACTTTATTCGGCACA+TGG 0.576960 3.1:+72126716 MS.gene052926:intron
GGATGCACACTTGATACAGA+AGG 0.577234 3.1:+72126741 MS.gene052926:CDS
AATGATGGTAGATGTGAAGA+AGG 0.579827 3.1:+72127163 MS.gene052926:CDS
AACCACGTTAAAATGGAGGC+TGG 0.580495 3.1:-72125832 None:intergenic
CTTTGGTGATTATGAAGTCA+AGG 0.580969 3.1:-72124535 None:intergenic
AGATTAAGGTAAACCTTGGA+GGG 0.581667 3.1:-72122777 None:intergenic
TTCCCATGCCACAATCTCAT+CGG 0.582164 3.1:+72126262 MS.gene052926:CDS
AGGGCGATCCGATGAGATTG+TGG 0.584876 3.1:-72126270 None:intergenic
GGATCGCCCTTATGCATCGC+AGG 0.593884 3.1:+72126283 MS.gene052926:CDS
TACCTGCCCTACAAACTGTT+AGG 0.606101 3.1:-72127031 None:intergenic
ATATACAGTATTTCATGTCA+CGG 0.612062 3.1:+72125415 MS.gene052926:intron
TCTTAATGTCTTCTATGTGA+GGG 0.617321 3.1:+72127076 MS.gene052926:CDS
GGGCAGGTATATCAACCAGA+GGG 0.617488 3.1:+72127045 MS.gene052926:CDS
GATGTACCTGCGATGCATAA+GGG 0.618291 3.1:-72126289 None:intergenic
GCTTACATATCTTCTGATGG+AGG 0.624587 3.1:+72124557 MS.gene052926:CDS
TACAGAAGGGGAGAAAGAAA+GGG 0.629110 3.1:+72126755 MS.gene052926:CDS
CTAATCGGGAGAGACCGCCC+TGG 0.632484 3.1:+72125780 MS.gene052926:CDS
GATGCACACTTGATACAGAA+GGG 0.635196 3.1:+72126742 MS.gene052926:CDS
AGAACCAGAGACACGAGGAT+GGG 0.635874 3.1:+72127202 MS.gene052926:CDS
TGTACTTTGCAGGGTCTCCG+TGG 0.635916 3.1:+72123503 MS.gene052926:intron
TCTATGTGAGGGATGCATCA+GGG 0.636872 3.1:+72127087 MS.gene052926:CDS
TGATGGTACGAGACAAGCCG+TGG 0.642205 3.1:+72125908 MS.gene052926:CDS
ACGTGGTTGTAGCTGAAGTG+TGG 0.647683 3.1:+72125847 MS.gene052926:CDS
GATCCGATGAGATTGTGGCA+TGG 0.649683 3.1:-72126265 None:intergenic
GATGGAGGATGGTTCATGGA+TGG 0.659799 3.1:+72124572 MS.gene052926:CDS
CTACAACCACGTTAAAATGG+AGG 0.661407 3.1:-72125836 None:intergenic
TTTCATGTCACGGATCAACA+AGG 0.661900 3.1:+72125425 MS.gene052926:CDS
AATTACCATAGAATGTTGTG+AGG 0.670161 3.1:+72126145 MS.gene052926:CDS
ATGCACACTTGATACAGAAG+GGG 0.670406 3.1:+72126743 MS.gene052926:CDS
ATGGCAACTAGCATTGTCCA+CGG 0.673612 3.1:-72123520 None:intergenic
TATTCAAAGAAGAGTAAGCG+AGG 0.682011 3.1:+72126800 MS.gene052926:CDS
GTTTCACCCATATTGATAGG+CGG 0.683397 3.1:+72126033 MS.gene052926:CDS
TGGAGTAACGACAACAGACA+GGG 0.688299 3.1:+72126097 MS.gene052926:CDS
ATATCTCAGACAAGAGACCA+GGG 0.700312 3.1:-72125797 None:intergenic
GGATGCATCAGGGAACTCAG+TGG 0.701774 3.1:+72127097 MS.gene052926:CDS
GAGCCTAGAGTTGTGTGCAA+AGG 0.708129 3.1:+72126959 MS.gene052926:CDS
AGGGCAGGTATATCAACCAG+AGG 0.716826 3.1:+72127044 MS.gene052926:CDS
GACAAAGAACCAGAGACACG+AGG 0.718132 3.1:+72127197 MS.gene052926:CDS
GGCAGGTATATCAACCAGAG+GGG 0.745288 3.1:+72127046 MS.gene052926:CDS
TCTCAGACAAGAGACCAGGG+CGG 0.828951 3.1:-72125794 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATAAAATACTTTTGTA+AGG + chr3.1:72122922-72122941 MS.gene052926:intron 10.0%
!!! AATTAAAACTGAAAAATTTT+CGG - chr3.1:72123981-72124000 None:intergenic 10.0%
!!! AATTGAATATAATTTGTAAA+AGG - chr3.1:72124297-72124316 None:intergenic 10.0%
!!! TTGAAATTTTTTTTTTTTGA+AGG + chr3.1:72124073-72124092 MS.gene052926:intron 10.0%
!!! TTTTTTTTTTTTTTTTGAAC+CGG + chr3.1:72125059-72125078 MS.gene052926:intron 10.0%
!! AAAAAATCGCAAAAAAAATT+TGG - chr3.1:72123956-72123975 None:intergenic 15.0%
!! AAAAATCGCAAAAAAAATTT+GGG - chr3.1:72123955-72123974 None:intergenic 15.0%
!! TAAAAAATAGAAAAACTCTA+GGG - chr3.1:72123694-72123713 None:intergenic 15.0%
!! TATATTCATTTATCAAGATA+TGG + chr3.1:72125527-72125546 MS.gene052926:intron 15.0%
!! TTCATAAAGAATCATTTATT+TGG + chr3.1:72124409-72124428 MS.gene052926:intron 15.0%
!!! AATTTATTCTTGTAACATTT+TGG - chr3.1:72126618-72126637 None:intergenic 15.0%
!!! ACGTATAAATAAATTTTTCA+AGG + chr3.1:72125623-72125642 MS.gene052926:intron 15.0%
!!! ACTGAATTTTTTTTTTTTGA+AGG - chr3.1:72123927-72123946 None:intergenic 15.0%
!!! AGTTTTTCTATTTTTTACAA+AGG + chr3.1:72123697-72123716 MS.gene052926:intron 15.0%
!!! ATTAAAACTGAAAAATTTTC+GGG - chr3.1:72123980-72123999 None:intergenic 15.0%
!!! CGTATAAATAAATTTTTCAA+GGG + chr3.1:72125624-72125643 MS.gene052926:intron 15.0%
!!! CTTTAAAATTTAACCAAATA+TGG + chr3.1:72122818-72122837 MS.gene052926:intron 15.0%
!!! TATTCAATTTTCAAACTTAT+AGG + chr3.1:72124308-72124327 MS.gene052926:intron 15.0%
!!! TTTTTTTTTTTTTTTGAACC+GGG + chr3.1:72125060-72125079 MS.gene052926:intron 15.0%
!! AAAAAATAGAAAAACTCTAG+GGG - chr3.1:72123693-72123712 None:intergenic 20.0%
!! AAAAAATAGAAAGAAAGTTG+TGG + chr3.1:72124944-72124963 MS.gene052926:intron 20.0%
!! AAAACAAAAAAAAATAAGCC+AGG - chr3.1:72123900-72123919 None:intergenic 20.0%
!! AAAAGGAATATTACCATATT+TGG - chr3.1:72122834-72122853 None:intergenic 20.0%
!! AAACAAAAAAAAATAAGCCA+GGG - chr3.1:72123899-72123918 None:intergenic 20.0%
!! AATTATGCAATGTAAAAGTA+TGG + chr3.1:72125257-72125276 MS.gene052926:intron 20.0%
!! AGTCTTAGTATTAAATTCTA+CGG + chr3.1:72126918-72126937 MS.gene052926:intron 20.0%
!! ATACATCAATTTCTCATAAA+TGG - chr3.1:72123001-72123020 None:intergenic 20.0%
!! CTCTTGACTATTATTAATAA+CGG - chr3.1:72124716-72124735 None:intergenic 20.0%
!! CTTTAACACTCTTTATTATT+GGG + chr3.1:72125196-72125215 MS.gene052926:intron 20.0%
!! GAAATACTGTATATATCAAT+CGG - chr3.1:72125409-72125428 None:intergenic 20.0%
!! GATTCTTTATGAAACAATAA+AGG - chr3.1:72124402-72124421 None:intergenic 20.0%
!! GTAAAAAATAGAAAAACTCT+AGG - chr3.1:72123695-72123714 None:intergenic 20.0%
!! TCAAAAAAGAATATCTCTTA+TGG + chr3.1:72125935-72125954 MS.gene052926:CDS 20.0%
!! TTAAATACTTGTATCAAGTA+GGG - chr3.1:72125370-72125389 None:intergenic 20.0%
!!! AAATAATTTTCAGACAAACA+AGG - chr3.1:72126583-72126602 None:intergenic 20.0%
!!! AATAATTTTCAGACAAACAA+GGG - chr3.1:72126582-72126601 None:intergenic 20.0%
!!! TTAAAACTGAAAAATTTTCG+GGG - chr3.1:72123979-72123998 None:intergenic 20.0%
!!! TTAACAGTTTTTCATACAAT+AGG + chr3.1:72125662-72125681 MS.gene052926:intron 20.0%
!!! TTCCTACTAATTTTGTTTAT+TGG + chr3.1:72126555-72126574 MS.gene052926:intron 20.0%
!!! TTTCTATTTTTTCAAGCTTA+GGG - chr3.1:72124936-72124955 None:intergenic 20.0%
! AAAAAGAATATCTCTTATGG+AGG + chr3.1:72125938-72125957 MS.gene052926:CDS 25.0%
! AACAAAAAAAAATAAGCCAG+GGG - chr3.1:72123898-72123917 None:intergenic 25.0%
! ATATACAGTATTTCATGTCA+CGG + chr3.1:72125415-72125434 MS.gene052926:intron 25.0%
! ATTAGAAATATGAAGACTTG+AGG + chr3.1:72126660-72126679 MS.gene052926:intron 25.0%
! ATTCTCACTTGGATTAATTT+AGG + chr3.1:72126635-72126654 MS.gene052926:intron 25.0%
! CAAAATATTACTACACAAAG+TGG + chr3.1:72123339-72123358 MS.gene052926:intron 25.0%
! CGATGAGTAATTGAAAAAAA+CGG + chr3.1:72125103-72125122 MS.gene052926:intron 25.0%
! CGTTATTAATAATAGTCAAG+AGG + chr3.1:72124714-72124733 MS.gene052926:intron 25.0%
! CTTAAATACTTGTATCAAGT+AGG - chr3.1:72125371-72125390 None:intergenic 25.0%
! GCTTTAACACTCTTTATTAT+TGG + chr3.1:72125195-72125214 MS.gene052926:intron 25.0%
! GTCCAATAAACAAAATTAGT+AGG - chr3.1:72126560-72126579 None:intergenic 25.0%
! TACAAGAATAAATTCTCACT+TGG + chr3.1:72126624-72126643 MS.gene052926:intron 25.0%
! TATTAATAATAGTCAAGAGG+TGG + chr3.1:72124717-72124736 MS.gene052926:intron 25.0%
! TGCCTATCATAAAAATGAAA+TGG + chr3.1:72125134-72125153 MS.gene052926:intron 25.0%
! TTAACTGATTAAACTTTGCA+GGG + chr3.1:72124193-72124212 MS.gene052926:intron 25.0%
! TTAACTGATTAAACTTTGCA+GGG - chr3.1:72124212-72124193 None:intergenic 25.0%
! TTAGGAGTAATGTTGTAATA+TGG + chr3.1:72124876-72124895 MS.gene052926:intron 25.0%
! TTGTATGAAAAACTGTTAAC+AGG - chr3.1:72125661-72125680 None:intergenic 25.0%
! TTTAACTGATTAAACTTTGC+AGG + chr3.1:72124192-72124211 MS.gene052926:intron 25.0%
! TTTAACTGATTAAACTTTGC+AGG - chr3.1:72124211-72124192 None:intergenic 25.0%
!! CAACATTCTATGGTAATTTT+CGG - chr3.1:72126143-72126162 None:intergenic 25.0%
!! CACTTTGTGTAGTAATATTT+TGG - chr3.1:72123341-72123360 None:intergenic 25.0%
!! GAATGTTTTCTATAAGATAG+AGG + chr3.1:72126413-72126432 MS.gene052926:intron 25.0%
!! GTATTAAATTCTACGGATTT+TGG + chr3.1:72126925-72126944 MS.gene052926:intron 25.0%
!!! CAACTTGTATTTTAACACTA+AGG - chr3.1:72124902-72124921 None:intergenic 25.0%
!!! CATTATTCTGTTTCTATGTA+AGG - chr3.1:72126477-72126496 None:intergenic 25.0%
!!! CTTTCTATTTTTTCAAGCTT+AGG - chr3.1:72124937-72124956 None:intergenic 25.0%
!!! TATTCTTTTTTGATCATCCA+CGG - chr3.1:72125928-72125947 None:intergenic 25.0%
!!! TGCCATTTCATTTTTATGAT+AGG - chr3.1:72125139-72125158 None:intergenic 25.0%
AAAAAAAGATTAGCGATTGC+AGG - chr3.1:72123773-72123792 None:intergenic 30.0%
AAAAAAGATTAGCGATTGCA+GGG - chr3.1:72123772-72123791 None:intergenic 30.0%
AAAAGTTCTTTCACAAATCG+TGG - chr3.1:72126865-72126884 None:intergenic 30.0%
AAACTTCATTTGTACTTTGC+AGG + chr3.1:72123493-72123512 MS.gene052926:intron 30.0%
AAAGCTTACATATCTTCTGA+TGG + chr3.1:72124554-72124573 MS.gene052926:CDS 30.0%
AACCATAGATCTCATTGAAA+AGG + chr3.1:72125469-72125488 MS.gene052926:CDS 30.0%
AACTTCATTTGTACTTTGCA+GGG + chr3.1:72123494-72123513 MS.gene052926:intron 30.0%
AAGGAAAAAAAAATTAGCCC+AGG + chr3.1:72124092-72124111 MS.gene052926:intron 30.0%
AATGAAGTTTACCATCAAAG+AGG - chr3.1:72123483-72123502 None:intergenic 30.0%
AATTACCATAGAATGTTGTG+AGG + chr3.1:72126145-72126164 MS.gene052926:CDS 30.0%
ACACAGATATACACAATGTT+TGG - chr3.1:72125016-72125035 None:intergenic 30.0%
ACGTCATCAAATTAACACAA+TGG + chr3.1:72123852-72123871 MS.gene052926:intron 30.0%
AGATTAAGGTTCAAACTCAT+AGG - chr3.1:72123221-72123240 None:intergenic 30.0%
AGATTGTGTTAAAAGGAGAT+CGG - chr3.1:72123272-72123291 None:intergenic 30.0%
AGCTCTGTTAAAAAAAGAGA+AGG - chr3.1:72123071-72123090 None:intergenic 30.0%
AGGAAAAAAAAATTAGCCCA+GGG + chr3.1:72124093-72124112 MS.gene052926:intron 30.0%
AGTCACACATAGTACTTAAA+TGG + chr3.1:72126345-72126364 MS.gene052926:intron 30.0%
ATAGAATGTTGTGAGGAAAA+AGG + chr3.1:72126152-72126171 MS.gene052926:CDS 30.0%
ATCAAATTAACACAATGGCA+TGG + chr3.1:72123857-72123876 MS.gene052926:intron 30.0%
ATCAGAAGATATGTAAGCTT+TGG - chr3.1:72124555-72124574 None:intergenic 30.0%
ATGGAAAAAAGTCATCAAAG+AGG - chr3.1:72123595-72123614 None:intergenic 30.0%
CAAAATTACCATAATGGCAT+GGG - chr3.1:72124134-72124153 None:intergenic 30.0%
CATGATCAGATTGTGTTAAA+AGG - chr3.1:72123279-72123298 None:intergenic 30.0%
CGTCATCAAAATTACCATAA+TGG - chr3.1:72124140-72124159 None:intergenic 30.0%
CTTACATGACACATTCATAT+TGG - chr3.1:72124809-72124828 None:intergenic 30.0%
GATAAGATTAAGGTAAACCT+TGG - chr3.1:72122784-72122803 None:intergenic 30.0%
GCGAAATCAAGATAAGATTA+AGG - chr3.1:72122794-72122813 None:intergenic 30.0%
GCTTCAGTTTCTACTTTAAT+TGG + chr3.1:72123425-72123444 MS.gene052926:intron 30.0%
TAACTGATTAAACTTTGCAG+GGG + chr3.1:72124194-72124213 MS.gene052926:intron 30.0%
TAACTGATTAAACTTTGCAG+GGG - chr3.1:72124213-72124194 None:intergenic 30.0%
TATAAGATAGAGGTCATGAA+AGG + chr3.1:72126423-72126442 MS.gene052926:intron 30.0%
TCAAAATTACCATAATGGCA+TGG - chr3.1:72124135-72124154 None:intergenic 30.0%
TCAAATTAACACAATGGCAT+GGG + chr3.1:72123858-72123877 MS.gene052926:intron 30.0%
TCATACTCAGGATCAAAATA+TGG - chr3.1:72122736-72122755 None:intergenic 30.0%
TCCCATATGAAATTTGAACA+GGG - chr3.1:72124655-72124674 None:intergenic 30.0%
TCTTAATGTCTTCTATGTGA+GGG + chr3.1:72127076-72127095 MS.gene052926:CDS 30.0%
TGTTCAAATTTCATATGGGA+CGG + chr3.1:72124655-72124674 MS.gene052926:intron 30.0%
TTAAATGGTTCAAATGTCGA+GGG + chr3.1:72126360-72126379 MS.gene052926:intron 30.0%
TTTAACACAATCTGATCATG+AGG + chr3.1:72123279-72123298 MS.gene052926:intron 30.0%
! AGATACAGCTTTTCTCAATT+TGG + chr3.1:72126530-72126549 MS.gene052926:intron 30.0%
! ATAACTGCCAAAGTTTTCAA+CGG - chr3.1:72124752-72124771 None:intergenic 30.0%
! ATTGGTTTCAGCTAAGATTA+AGG - chr3.1:72123235-72123254 None:intergenic 30.0%
! CAAACTCATCTTAGTTCTTT+CGG + chr3.1:72123128-72123147 MS.gene052926:intron 30.0%
! CAATGTTTGGTAACAAAGTT+CGG - chr3.1:72125003-72125022 None:intergenic 30.0%
! TATGCAATGTAAAAGTATGG+TGG + chr3.1:72125260-72125279 MS.gene052926:intron 30.0%
! TCTTTGTAGCTAATGCATTT+TGG - chr3.1:72124626-72124645 None:intergenic 30.0%
! TTTTTCATACAATAGGCTCT+AGG + chr3.1:72125669-72125688 MS.gene052926:intron 30.0%
! TTTTTCCTCACAACATTCTA+TGG - chr3.1:72126153-72126172 None:intergenic 30.0%
!! ATTGTGTTAATTTGATGACG+TGG - chr3.1:72123853-72123872 None:intergenic 30.0%
!! TAATAAAGAGTGTTAAAGCG+TGG - chr3.1:72125194-72125213 None:intergenic 30.0%
!! TTTGATAGTGTTAACAAACC+TGG + chr3.1:72124479-72124498 MS.gene052926:CDS 30.0%
!! TTTTTCAATTACTCATCGCA+AGG - chr3.1:72125101-72125120 None:intergenic 30.0%
!!! ATTTGATGGTTTTAGGCAAA+AGG - chr3.1:72122851-72122870 None:intergenic 30.0%
!!! TCTTTGATGACTTTTTTCCA+TGG + chr3.1:72123594-72123613 MS.gene052926:intron 30.0%
!!! TTATGGTAATTTTGATGACG+TGG + chr3.1:72124140-72124159 MS.gene052926:intron 30.0%
AAGATTAAGGTAAACCTTGG+AGG - chr3.1:72122781-72122800 None:intergenic 35.0%
AATGATGGTAGATGTGAAGA+AGG + chr3.1:72127163-72127182 MS.gene052926:CDS 35.0%
ACAAAGAAGAAGTGAAGAGT+TGG + chr3.1:72125706-72125725 MS.gene052926:CDS 35.0%
ACAAGTGGCTACTTAAAAAG+TGG - chr3.1:72124366-72124385 None:intergenic 35.0%
AGAAATCGGTAAGACAATGA+TGG + chr3.1:72127148-72127167 MS.gene052926:CDS 35.0%
AGATTAAGGTAAACCTTGGA+GGG - chr3.1:72122780-72122799 None:intergenic 35.0%
ATATAGCGATTGAGCTAATC+GGG + chr3.1:72125766-72125785 MS.gene052926:CDS 35.0%
ATATGAAGACTTGAGGAATG+TGG + chr3.1:72126667-72126686 MS.gene052926:intron 35.0%
ATCAATATGGGTGAAACTCA+TGG - chr3.1:72126030-72126049 None:intergenic 35.0%
ATGGTAACCGTTGAAAACTT+TGG + chr3.1:72124742-72124761 MS.gene052926:intron 35.0%
CACACAATCACACACATTTA+TGG + chr3.1:72125325-72125344 MS.gene052926:intron 35.0%
CATATAGCGATTGAGCTAAT+CGG + chr3.1:72125765-72125784 MS.gene052926:CDS 35.0%
CCATAACTGTACACTAATCA+AGG + chr3.1:72123539-72123558 MS.gene052926:CDS 35.0%
CCTTGATTAGTGTACAGTTA+TGG - chr3.1:72123542-72123561 None:intergenic 35.0%
CTCTTAATGTCTTCTATGTG+AGG + chr3.1:72127075-72127094 MS.gene052926:CDS 35.0%
CTTAAATGGTTCAAATGTCG+AGG + chr3.1:72126359-72126378 MS.gene052926:intron 35.0%
GATCGGGATTATGAAAGTTA+TGG + chr3.1:72126077-72126096 MS.gene052926:CDS 35.0%
GCATAAACGTGTGAATTTGA+TGG - chr3.1:72122865-72122884 None:intergenic 35.0%
GCCCTGTTCAAATTTCATAT+GGG + chr3.1:72124651-72124670 MS.gene052926:intron 35.0%
GGAAAAAAAAATTAGCCCAG+GGG + chr3.1:72124094-72124113 MS.gene052926:intron 35.0%
GGAGGATTTGTGTATTCAAA+TGG + chr3.1:72126451-72126470 MS.gene052926:intron 35.0%
GTAGAAACTGAAGCTGAATA+AGG - chr3.1:72123419-72123438 None:intergenic 35.0%
GTCCCATATGAAATTTGAAC+AGG - chr3.1:72124656-72124675 None:intergenic 35.0%
GTTCAAATTTCATATGGGAC+GGG + chr3.1:72124656-72124675 MS.gene052926:intron 35.0%
TAAAAAGTGGTACTCACAGA+GGG - chr3.1:72124353-72124372 None:intergenic 35.0%
TAACAAACCTGGAATTCTAC+TGG + chr3.1:72124490-72124509 MS.gene052926:CDS 35.0%
TAATAGTCAAGAGGTGGTAA+TGG + chr3.1:72124723-72124742 MS.gene052926:intron 35.0%
TATGAGTCATACTCACTGAT+AGG - chr3.1:72124844-72124863 None:intergenic 35.0%
TATTCAAAGAAGAGTAAGCG+AGG + chr3.1:72126800-72126819 MS.gene052926:CDS 35.0%
TCGTACCATCATTGACATAA+AGG - chr3.1:72125899-72125918 None:intergenic 35.0%
TCTTCACTTCTTCTTTGTTC+TGG - chr3.1:72125704-72125723 None:intergenic 35.0%
TGAGTTTCACCCATATTGAT+AGG + chr3.1:72126030-72126049 MS.gene052926:CDS 35.0%
TGCCCTGTTCAAATTTCATA+TGG + chr3.1:72124650-72124669 MS.gene052926:intron 35.0%
TGTGTCCTTTATGTCAATGA+TGG + chr3.1:72125891-72125910 MS.gene052926:CDS 35.0%
TTAAAAAGTGGTACTCACAG+AGG - chr3.1:72124354-72124373 None:intergenic 35.0%
TTGCTGAAATTCTCATACTC+AGG - chr3.1:72122748-72122767 None:intergenic 35.0%
TTGTGAGGAAAAAGGATACT+CGG + chr3.1:72126160-72126179 MS.gene052926:CDS 35.0%
! AAAAAAGGATTAGCGATTGC+AGG + chr3.1:72124221-72124240 MS.gene052926:intron 35.0%
! AAAAAGGATTAGCGATTGCA+GGG + chr3.1:72124222-72124241 MS.gene052926:intron 35.0%
! ACAAGAATTCTGAGAGAGAA+TGG + chr3.1:72127008-72127027 MS.gene052926:CDS 35.0%
! ACCAAATGTTGTTTGCTGAT+CGG + chr3.1:72126060-72126079 MS.gene052926:CDS 35.0%
! ATCAGCTACTTTAGAAGTCT+AGG + chr3.1:72123642-72123661 MS.gene052926:intron 35.0%
! CACCTTTTCAATGAGATCTA+TGG - chr3.1:72125474-72125493 None:intergenic 35.0%
! CAGCTCAATAACATTTTACG+TGG + chr3.1:72125963-72125982 MS.gene052926:CDS 35.0%
! CTTCTTCTTTGGTAACTTGT+TGG + chr3.1:72127235-72127254 MS.gene052926:CDS 35.0%
! CTTTGGTGATTATGAAGTCA+AGG - chr3.1:72124538-72124557 None:intergenic 35.0%
! GAAGCACTTCGTAAAGAAAT+CGG + chr3.1:72127134-72127153 MS.gene052926:CDS 35.0%
! GCTAAAACTAGCTTCTTCTT+TGG + chr3.1:72127224-72127243 MS.gene052926:CDS 35.0%
! TAACATTTTACGTGGATGTG+AGG + chr3.1:72125971-72125990 MS.gene052926:CDS 35.0%
!! AAAAGAAGTGTCCTCTTTGA+TGG + chr3.1:72123469-72123488 MS.gene052926:intron 35.0%
!! CGTGTGAATTTGATGGTTTT+AGG - chr3.1:72122858-72122877 None:intergenic 35.0%
!! GTTTTAGACGAAAAAGGAAG+AGG + chr3.1:72125162-72125181 MS.gene052926:intron 35.0%
!! TAACTTGTTGGAAAGGTTCT+TGG + chr3.1:72127247-72127266 MS.gene052926:CDS 35.0%
!! TAGACTTCTAAAGTAGCTGA+TGG - chr3.1:72123643-72123662 None:intergenic 35.0%
!! TCTGGTTCTTTGTCATATGT+TGG - chr3.1:72127191-72127210 None:intergenic 35.0%
!! TCTTTGGTAACTTGTTGGAA+AGG + chr3.1:72127240-72127259 MS.gene052926:CDS 35.0%
!!! GCATGAGTTTTAGACGAAAA+AGG + chr3.1:72125156-72125175 MS.gene052926:intron 35.0%
!!! TCTTCTTTGTTCTGGCTTTT+CGG - chr3.1:72125696-72125715 None:intergenic 35.0%
AAATTTCATATGGGACGGGA+CGG + chr3.1:72124660-72124679 MS.gene052926:intron 40.0%
ACATATCTTCTGATGGAGGA+TGG + chr3.1:72124561-72124580 MS.gene052926:CDS 40.0%
AGAATGGCCTAACAGTTTGT+AGG + chr3.1:72127024-72127043 MS.gene052926:CDS 40.0%
AGGTATTAAAACAGCACTCC+CGG - chr3.1:72125081-72125100 None:intergenic 40.0%
ATACAGAAGGGGAGAAAGAA+AGG + chr3.1:72126754-72126773 MS.gene052926:CDS 40.0%
ATATCTCAGACAAGAGACCA+GGG - chr3.1:72125800-72125819 None:intergenic 40.0%
ATGCACACTTGATACAGAAG+GGG + chr3.1:72126743-72126762 MS.gene052926:CDS 40.0%
ATGGAGAGAAAGTTGCTAGT+AGG + chr3.1:72125994-72126013 MS.gene052926:CDS 40.0%
CAGCTACAACCACGTTAAAA+TGG - chr3.1:72125842-72125861 None:intergenic 40.0%
CCAAACCACAACTCATATAG+AGG - chr3.1:72123620-72123639 None:intergenic 40.0%
CCTCTATATGAGTTGTGGTT+TGG + chr3.1:72123617-72123636 MS.gene052926:intron 40.0%
CTACAACCACGTTAAAATGG+AGG - chr3.1:72125839-72125858 None:intergenic 40.0%
CTCATAGTGCAGTACAGTTT+AGG + chr3.1:72124858-72124877 MS.gene052926:intron 40.0%
CTTTGCAGGGGCAAAAAAAA+AGG + chr3.1:72124206-72124225 MS.gene052926:intron 40.0%
GAATGGCCTAACAGTTTGTA+GGG + chr3.1:72127025-72127044 MS.gene052926:CDS 40.0%
GAATTGACGAAAATACCCCT+GGG - chr3.1:72123899-72123880 None:intergenic 40.0%
GAGTGAGACACTACATATGT+TGG - chr3.1:72122951-72122970 None:intergenic 40.0%
GATCAGCAAACAACATTTGG+TGG - chr3.1:72126061-72126080 None:intergenic 40.0%
GATGCACACTTGATACAGAA+GGG + chr3.1:72126742-72126761 MS.gene052926:CDS 40.0%
GCTTACATATCTTCTGATGG+AGG + chr3.1:72124557-72124576 MS.gene052926:CDS 40.0%
GGAATACTTTATTCGGCACA+TGG + chr3.1:72126716-72126735 MS.gene052926:intron 40.0%
GTGACTGATAAGTGAACATG+CGG - chr3.1:72126331-72126350 None:intergenic 40.0%
GTTAAAAGGAGATCGGAGTT+GGG - chr3.1:72123265-72123284 None:intergenic 40.0%
GTTATTCGTCCCTGCAAATA+GGG + chr3.1:72123729-72123748 MS.gene052926:intron 40.0%
GTTTCACCCATATTGATAGG+CGG + chr3.1:72126033-72126052 MS.gene052926:CDS 40.0%
GTTTCTATCTAACTACCACG+TGG + chr3.1:72125549-72125568 MS.gene052926:intron 40.0%
TACAGAAGGGGAGAAAGAAA+GGG + chr3.1:72126755-72126774 MS.gene052926:CDS 40.0%
TACTTTATTCGGCACATGGA+CGG + chr3.1:72126720-72126739 MS.gene052926:CDS 40.0%
TATCCTTTGCACACAACTCT+AGG - chr3.1:72126965-72126984 None:intergenic 40.0%
TGGAAAGGTTCTTGGCTTAA+AGG + chr3.1:72127255-72127274 MS.gene052926:CDS 40.0%
TGTGTTTGAAAAGAGAGAGC+AGG - chr3.1:72125309-72125328 None:intergenic 40.0%
TGTTAAAAGGAGATCGGAGT+TGG - chr3.1:72123266-72123285 None:intergenic 40.0%
TGTTATTCGTCCCTGCAAAT+AGG + chr3.1:72123728-72123747 MS.gene052926:intron 40.0%
TTAAACGACCCCTATTTGCA+GGG - chr3.1:72123741-72123760 None:intergenic 40.0%
TTATTCGTCCCTGCAAATAG+GGG + chr3.1:72123730-72123749 MS.gene052926:intron 40.0%
TTGGGTGAATGAATCAGTCT+AGG + chr3.1:72125214-72125233 MS.gene052926:intron 40.0%
TTGTGTGCAAAGGATAGAGT+GGG + chr3.1:72126969-72126988 MS.gene052926:CDS 40.0%
TTTAAACGACCCCTATTTGC+AGG - chr3.1:72123742-72123761 None:intergenic 40.0%
TTTCATGTCACGGATCAACA+AGG + chr3.1:72125425-72125444 MS.gene052926:CDS 40.0%
! AGAGTGTTAAAGCGTGGTAT+TGG - chr3.1:72125188-72125207 None:intergenic 40.0%
! ATTCTACGGATTTTGGACAC+AGG + chr3.1:72126932-72126951 MS.gene052926:intron 40.0%
! ATTTTACGTGGATGTGAGGA+TGG + chr3.1:72125975-72125994 MS.gene052926:CDS 40.0%
! CCAAATGTTGTTTGCTGATC+GGG + chr3.1:72126061-72126080 MS.gene052926:CDS 40.0%
! GCAGTCATTAACTTGGTCAA+GGG + chr3.1:72124162-72124181 MS.gene052926:intron 40.0%
! GCAGTCATTAACTTGGTCAA+TGG - chr3.1:72124181-72124162 None:intergenic 40.0%
! GTAATTTTCGGCCTGAAAGA+GGG - chr3.1:72126131-72126150 None:intergenic 40.0%
! TTCTACGGATTTTGGACACA+GGG + chr3.1:72126933-72126952 MS.gene052926:intron 40.0%
AACCACGTTAAAATGGAGGC+TGG - chr3.1:72125835-72125854 None:intergenic 45.0%
ACCACTTCCAGTAGAATTCC+AGG - chr3.1:72124500-72124519 None:intergenic 45.0%
ACCTGGAATTCTACTGGAAG+TGG + chr3.1:72124496-72124515 MS.gene052926:CDS 45.0%
ATCCGATGAGATTGTGGCAT+GGG - chr3.1:72126267-72126286 None:intergenic 45.0%
ATGAATTCGAGTCTTCCACG+TGG - chr3.1:72125567-72125586 None:intergenic 45.0%
ATGGAGTAACGACAACAGAC+AGG + chr3.1:72126096-72126115 MS.gene052926:CDS 45.0%
ATGGCAACTAGCATTGTCCA+CGG - chr3.1:72123523-72123542 None:intergenic 45.0%
CACAACTCATATAGAGGCCA+TGG - chr3.1:72123614-72123633 None:intergenic 45.0%
CATGGCCTCTATATGAGTTG+TGG + chr3.1:72123612-72123631 MS.gene052926:intron 45.0%
CCCGATCAGCAAACAACATT+TGG - chr3.1:72126064-72126083 None:intergenic 45.0%
CGTCAATTCCCATGCCATTA+TGG + chr3.1:72124123-72124142 MS.gene052926:intron 45.0%
CTGAAGTGTGGACTCATAAC+AGG + chr3.1:72125859-72125878 MS.gene052926:CDS 45.0%
GATATCTCAGACAAGAGACC+AGG - chr3.1:72125801-72125820 None:intergenic 45.0%
GATGTACCTGCGATGCATAA+GGG - chr3.1:72126292-72126311 None:intergenic 45.0%
GCAACAAAATCAACCCTCCA+AGG + chr3.1:72122764-72122783 MS.gene052926:CDS 45.0%
GGAATTGACGAAAATACCCC+TGG + chr3.1:72123879-72123898 MS.gene052926:intron 45.0%
GGAATTGACGAAAATACCCC+TGG - chr3.1:72123898-72123879 None:intergenic 45.0%
GGAGCAATGTGACAAACAAG+TGG - chr3.1:72124381-72124400 None:intergenic 45.0%
GGATGCACACTTGATACAGA+AGG + chr3.1:72126741-72126760 MS.gene052926:CDS 45.0%
GGTGAAACTCATGGACAAAC+TGG - chr3.1:72126021-72126040 None:intergenic 45.0%
GTTATCCGTCCCTGCAAATA+GGG - chr3.1:72124265-72124284 None:intergenic 45.0%
GTTGTGTGCAAAGGATAGAG+TGG + chr3.1:72126968-72126987 MS.gene052926:CDS 45.0%
TACCTGCCCTACAAACTGTT+AGG - chr3.1:72127034-72127053 None:intergenic 45.0%
TAGAGGTCATGAAAGGCTTG+TGG + chr3.1:72126430-72126449 MS.gene052926:intron 45.0%
TCGGAGTTGGGTAGGTAAAT+TGG - chr3.1:72123253-72123272 None:intergenic 45.0%
TCTATGTGAGGGATGCATCA+GGG + chr3.1:72127087-72127106 MS.gene052926:CDS 45.0%
TGACGTGGCAGTCATTAACT+TGG + chr3.1:72124155-72124174 MS.gene052926:intron 45.0%
TGACGTGGCAGTCATTAACT+TGG - chr3.1:72124174-72124155 None:intergenic 45.0%
TGAGGAAAAAGGATACTCGG+TGG + chr3.1:72126163-72126182 MS.gene052926:CDS 45.0%
TGATGTACCTGCGATGCATA+AGG - chr3.1:72126293-72126312 None:intergenic 45.0%
TGGAGTAACGACAACAGACA+GGG + chr3.1:72126097-72126116 MS.gene052926:CDS 45.0%
TGTTATCCGTCCCTGCAAAT+AGG - chr3.1:72124266-72124285 None:intergenic 45.0%
TTAAGCGACCCCTATTTGCA+GGG + chr3.1:72124253-72124272 MS.gene052926:intron 45.0%
TTATCCGTCCCTGCAAATAG+GGG - chr3.1:72124264-72124283 None:intergenic 45.0%
TTCCCATGCCACAATCTCAT+CGG + chr3.1:72126262-72126281 MS.gene052926:CDS 45.0%
TTCTATGTGAGGGATGCATC+AGG + chr3.1:72127086-72127105 MS.gene052926:CDS 45.0%
TTCTGATGGAGGATGGTTCA+TGG + chr3.1:72124568-72124587 MS.gene052926:CDS 45.0%
TTTAAGCGACCCCTATTTGC+AGG + chr3.1:72124252-72124271 MS.gene052926:intron 45.0%
! ATTAAGAGCTTGTTCCCCTC+TGG - chr3.1:72127063-72127082 None:intergenic 45.0%
! GAAGAAGTGAAGAGTTGGTC+AGG + chr3.1:72125711-72125730 MS.gene052926:CDS 45.0%
! GAAGAGTTGGTCAGGCAAAT+GGG + chr3.1:72125719-72125738 MS.gene052926:CDS 45.0%
! GGCAGTCATTAACTTGGTCA+AGG + chr3.1:72124161-72124180 MS.gene052926:intron 45.0%
! GGTAATTTTCGGCCTGAAAG+AGG - chr3.1:72126132-72126151 None:intergenic 45.0%
! TGAAGAGTTGGTCAGGCAAA+TGG + chr3.1:72125718-72125737 MS.gene052926:CDS 45.0%
!! TTAAAAGTAAAAAAAAAATT+CGG - chr3.1:72124018-72124037 None:intergenic 5.0%
!! TTAAAATTAAAATGTTTAAT+TGG + chr3.1:72123383-72123402 MS.gene052926:intron 5.0%
!!! TTTATTTTATTTTTGAAATA+CGG + chr3.1:72123097-72123116 MS.gene052926:intron 5.0%
AAAGGAGATCGGAGTTGGGT+AGG - chr3.1:72123261-72123280 None:intergenic 50.0%
AAGAACCAGAGACACGAGGA+TGG + chr3.1:72127201-72127220 MS.gene052926:CDS 50.0%
ACGTGGTTGTAGCTGAAGTG+TGG + chr3.1:72125847-72125866 MS.gene052926:CDS 50.0%
AGAACCAGAGACACGAGGAT+GGG + chr3.1:72127202-72127221 MS.gene052926:CDS 50.0%
AGGGCAGGTATATCAACCAG+AGG + chr3.1:72127044-72127063 MS.gene052926:CDS 50.0%
AGGTCATGAAAGGCTTGTGG+AGG + chr3.1:72126433-72126452 MS.gene052926:intron 50.0%
AGTTGGTCAGGCAAATGGGT+TGG + chr3.1:72125723-72125742 MS.gene052926:CDS 50.0%
CGTTAAAATGGAGGCTGGCA+AGG - chr3.1:72125830-72125849 None:intergenic 50.0%
GACAAAGAACCAGAGACACG+AGG + chr3.1:72127197-72127216 MS.gene052926:CDS 50.0%
GAGCCTAGAGTTGTGTGCAA+AGG + chr3.1:72126959-72126978 MS.gene052926:CDS 50.0%
GATCCGATGAGATTGTGGCA+TGG - chr3.1:72126268-72126287 None:intergenic 50.0%
GATGGAGGATGGTTCATGGA+TGG + chr3.1:72124572-72124591 MS.gene052926:CDS 50.0%
GGCAGGTATATCAACCAGAG+GGG + chr3.1:72127046-72127065 MS.gene052926:CDS 50.0%
GGGCAGGTATATCAACCAGA+GGG + chr3.1:72127045-72127064 MS.gene052926:CDS 50.0%
GTGGAGCCGCCTATCAATAT+GGG - chr3.1:72126042-72126061 None:intergenic 50.0%
TGACCACATCTCCGACTACA+GGG - chr3.1:72124973-72124992 None:intergenic 50.0%
! ATTTTCGGCCTGAAAGAGGG+AGG - chr3.1:72126128-72126147 None:intergenic 50.0%
! GTTGGTCAGGCAAATGGGTT+GGG + chr3.1:72125724-72125743 MS.gene052926:CDS 50.0%
!! TGCCAGCCTCCATTTTAACG+TGG + chr3.1:72125830-72125849 MS.gene052926:CDS 50.0%
!! TTGGTCAGGCAAATGGGTTG+GGG + chr3.1:72125725-72125744 MS.gene052926:CDS 50.0%
AGGGCGATCCGATGAGATTG+TGG - chr3.1:72126273-72126292 None:intergenic 55.0%
GGATGCATCAGGGAACTCAG+TGG + chr3.1:72127097-72127116 MS.gene052926:CDS 55.0%
GGCCTAACAGTTTGTAGGGC+AGG + chr3.1:72127029-72127048 MS.gene052926:CDS 55.0%
GGGAATGTCCTCCCTCTTTC+AGG + chr3.1:72126117-72126136 MS.gene052926:CDS 55.0%
GGGACGGGACGGTTGTAAAA+TGG + chr3.1:72124671-72124690 MS.gene052926:intron 55.0%
GGTGGAGCCGCCTATCAATA+TGG - chr3.1:72126043-72126062 None:intergenic 55.0%
GTGACCACATCTCCGACTAC+AGG - chr3.1:72124974-72124993 None:intergenic 55.0%
TCTCAGACAAGAGACCAGGG+CGG - chr3.1:72125797-72125816 None:intergenic 55.0%
TGATGGTACGAGACAAGCCG+TGG + chr3.1:72125908-72125927 MS.gene052926:CDS 55.0%
TGGTACTCACAGAGGGCTAG+TGG - chr3.1:72124346-72124365 None:intergenic 55.0%
TGTACTTTGCAGGGTCTCCG+TGG + chr3.1:72123503-72123522 MS.gene052926:intron 55.0%
TTAGCCCATCCTCGTGTCTC+TGG - chr3.1:72127209-72127228 None:intergenic 55.0%
! TGGGTTGGGGTGCATTCTGT+TGG + chr3.1:72125738-72125757 MS.gene052926:CDS 55.0%
AGTTGTGGCCGCCCTGTAGT+CGG + chr3.1:72124959-72124978 MS.gene052926:intron 60.0%
CCACATCTCCGACTACAGGG+CGG - chr3.1:72124970-72124989 None:intergenic 60.0%
GCGACCCCTATTTGCAGGGA+CGG + chr3.1:72124257-72124276 MS.gene052926:intron 60.0%
GGATCGCCCTTATGCATCGC+AGG + chr3.1:72126283-72126302 MS.gene052926:CDS 60.0%
CCGCCCTGTAGTCGGAGATG+TGG + chr3.1:72124967-72124986 MS.gene052926:intron 65.0%
CTAATCGGGAGAGACCGCCC+TGG + chr3.1:72125780-72125799 MS.gene052926:CDS 65.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 72122715 72127274 72122715 ID=MS.gene052926
chr3.1 mRNA 72122715 72127274 72122715 ID=MS.gene052926.t1;Parent=MS.gene052926
chr3.1 exon 72122715 72122785 72122715 ID=MS.gene052926.t1.exon1;Parent=MS.gene052926.t1
chr3.1 CDS 72122715 72122785 72122715 ID=cds.MS.gene052926.t1;Parent=MS.gene052926.t1
chr3.1 exon 72123515 72123560 72123515 ID=MS.gene052926.t1.exon2;Parent=MS.gene052926.t1
chr3.1 CDS 72123515 72123560 72123515 ID=cds.MS.gene052926.t1;Parent=MS.gene052926.t1
chr3.1 exon 72124479 72124593 72124479 ID=MS.gene052926.t1.exon3;Parent=MS.gene052926.t1
chr3.1 CDS 72124479 72124593 72124479 ID=cds.MS.gene052926.t1;Parent=MS.gene052926.t1
chr3.1 exon 72125423 72125490 72125423 ID=MS.gene052926.t1.exon4;Parent=MS.gene052926.t1
chr3.1 CDS 72125423 72125490 72125423 ID=cds.MS.gene052926.t1;Parent=MS.gene052926.t1
chr3.1 exon 72125684 72126304 72125684 ID=MS.gene052926.t1.exon5;Parent=MS.gene052926.t1
chr3.1 CDS 72125684 72126304 72125684 ID=cds.MS.gene052926.t1;Parent=MS.gene052926.t1
chr3.1 exon 72126717 72126821 72126717 ID=MS.gene052926.t1.exon6;Parent=MS.gene052926.t1
chr3.1 CDS 72126717 72126821 72126717 ID=cds.MS.gene052926.t1;Parent=MS.gene052926.t1
chr3.1 exon 72126954 72127274 72126954 ID=MS.gene052926.t1.exon7;Parent=MS.gene052926.t1
chr3.1 CDS 72126954 72127274 72126954 ID=cds.MS.gene052926.t1;Parent=MS.gene052926.t1
Gene Sequence

>MS.gene052926

ATGGCTGCAGTTTGTTGGCCATATTTTGATCCTGAGTATGAGAATTTCAGCAACAAAATCAACCCTCCAAGGTTTACCTTAATCTTATCTTGATTTCGCTATGCTTTAAAATTTAACCAAATATGGTAATATTCCTTTTGCCTAAAACCATCAAATTCACACGTTTATGCAAATATTTTAATTTTCATGTACTGTATTATAGATTTCAAATATAAAATACTTTTGTAAGGAGACCAACATATGTAGTGTCTCACTCGCAGTACTATCTTTGCAAGACTTTGTACCATTTATGAGAAATTGATGTATAGACTAAATTGTCATTTAAAAACTTAAATTATTTAAATATCTCATATCCTTCTCTTTTTTTAACAGAGCTCTCAATTTTATTTTATTTTTGAAATACGGAGAGAATTCAAACTCATCTTAGTTCTTTCGGTCTCTTTATTCTTTTTTGAAACATACAATGTTAGTAATTAGTTTATTAGATTAATATTTTTCTTCTTCCTATGAGTTTGAACCTTAATCTTAGCTGAAACCAATTTACCTACCCAACTCCGATCTCCTTTTAACACAATCTGATCATGAGGAGAGCAAAGAACAAAATCGAATCATCTTGTACAGAGCCAAAATATTACTACACAAAGTGGTCACTTAAATGCTTCAATTTTTTAAAATTAAAATGTTTAATTGGTAAAATTCAACCTTATTCAGCTTCAGTTTCTACTTTAATTGGTAAAAAAAAATTTAAGAGACAAAAAGAAGTGTCCTCTTTGATGGTAAACTTCATTTGTACTTTGCAGGGTCTCCGTGGACAATGCTAGTTGCCATAACTGTACACTAATCAAGGTACGTATAATTTCTAAATTAAAAGAAGTGTCCTCTTTGATGACTTTTTTCCATGGCCTCTATATGAGTTGTGGTTTGGCCATCAGCTACTTTAGAAGTCTAGGTTGTGTTGTTTTTTAAGTTTCTTGACCCCTAGAGTTTTTCTATTTTTTACAAAGGCTTAAATATGTTATTCGTCCCTGCAAATAGGGGTCGTTTAAAATTTCGACCCTGCAATCGCTAATCTTTTTTTTTGCCCCTGCAAAGTTTAATCAGTTAAATATTCGTCCATTGACCAAGTTAATGACTGCCACGTCATCAAATTAACACAATGGCATGGGAATTGACGAAAATACCCCTGGCTTATTTTTTTTTGTTTTTTTTCCTTCAAAAAAAAAAAATTCAGTTTTTTCCCAAATTTTTTTTGCGATTTTTTCCCCGAAAATTTTTCAGTTTTAATTTTAACAGTTTTTTTCCGAATTTTTTTTTTACTTTTAATTATTTTTTTAATATAAAAAAGAATTTTCAAAATTTTGAAATTTTTTTTTTTTGAAGGAAAAAAAAATTAGCCCAGGGGTATTTTCGTCAATTCCCATGCCATTATGGTAATTTTGATGACGTGGCAGTCATTAACTTGGTCAAGGGACGAATTTTTAACTGATTAAACTTTGCAGGGGCAAAAAAAAAGGATTAGCGATTGCAGGGACGAAATTTTAAGCGACCCCTATTTGCAGGGACGGATAACATATTTAAGCCTTTTACAAATTATATTCAATTTTCAAACTTATAGGTTAAATGATATTCCACTAGCCCTCTGTGAGTACCACTTTTTAAGTAGCCACTTGTTTGTCACATTGCTCCTTTATTGTTTCATAAAGAATCATTTATTTGGAGATTAGTATATGCAATTTTTCACTACTGCATTTTTATTATATGCAGTTTGATAGTGTTAACAAACCTGGAATTCTACTGGAAGTGGTGCAAATCTTGACAGACCTTGACTTCATAATCACCAAAGCTTACATATCTTCTGATGGAGGATGGTTCATGGATGGTATGTTTCTCATTAATTTAACTTTCTTTCCAAAATGCATTAGCTACAAAGATATGTGCCCTGTTCAAATTTCATATGGGACGGGACGGTTGTAAAATGGTCATAAGTATTAAGCGTCGCCGTTATTAATAATAGTCAAGAGGTGGTAATGGTAACCGTTGAAAACTTTGGCAGTTATTAAGCTGTTCTTCATTATTATCATTTCTATCTTGCCAATATGAATGTGTCATGTAAGTATCAAGTAATTCCTATCAGTGAGTATGACTCATAGTGCAGTACAGTTTAGGAGTAATGTTGTAATATGGCCTTAGTGTTAAAATACAAGTTGTACACTGTAAACCCTAAGCTTGAAAAAATAGAAAGAAAGTTGTGGCCGCCCTGTAGTCGGAGATGTGGTCACAATTAGCCGAACTTTGTTACCAAACATTGTGTATATCTGTGTTTGTGTTTTTGTATCTTTTTTTTTTTTTTTTTTTTTTTTGAACCGGGAGTGCTGTTTTAATACCTTGCGATGAGTAATTGAAAAAAACGGCACTTGTATGCCTATCATAAAAATGAAATGGCATGAGTTTTAGACGAAAAAGGAAGAGGCCAATACCACGCTTTAACACTCTTTATTATTGGGTGAATGAATCAGTCTAGGTATTTTAGTGAGACTCATGAAATTATGCAATGTAAAAGTATGGTGGTAACATTAGTATACATTCATATACCTGCTCTCTCTTTTCAAACACACAATCACACACATTTATGGTTATGTGTTCTTGAATATTCCCTACTTGATACAAGTATTTAAGCTGCTAACTTATTCACCGATTGATATATACAGTATTTCATGTCACGGATCAACAAGGAAAAAAGATAACAGATAGCAAAACCATAGATCTCATTGAAAAGGTGTACATATCTTCTTTCTCTAACATATGCATCTGATATATTCATTTATCAAGATATGGTTTCTATCTAACTACCACGTGGAAGACTCGAATTCATTGCTGAAAAATTGAACTAGCACAATTCTTTCAATATACGTATAAATAAATTTTTCAAGGGAATAATTGCTACCTGTTAACAGTTTTTCATACAATAGGCTCTAGGACCGAAAAGCCAGAACAAAGAAGAAGTGAAGAGTTGGTCAGGCAAATGGGTTGGGGTGCATTCTGTTGGTGATCATATAGCGATTGAGCTAATCGGGAGAGACCGCCCTGGTCTCTTGTCTGAGATATCAGCTGTCCTTGCCAGCCTCCATTTTAACGTGGTTGTAGCTGAAGTGTGGACTCATAACAGGAGAATAGCTTGTGTCCTTTATGTCAATGATGGTACGAGACAAGCCGTGGATGATCAAAAAAGAATATCTCTTATGGAGGAGCAGCTCAATAACATTTTACGTGGATGTGAGGATGGAGAGAAAGTTGCTAGTAGGACCAGTTTGTCCATGAGTTTCACCCATATTGATAGGCGGCTCCACCAAATGTTGTTTGCTGATCGGGATTATGAAAGTTATGGAGTAACGACAACAGACAGGGAATGTCCTCCCTCTTTCAGGCCGAAAATTACCATAGAATGTTGTGAGGAAAAAGGATACTCGGTGGTGAATGTCAGATGCAAAGATCGCGCAAAACTCATGTTTGACATTGTTTGCACTCTTACTGATATGCAATATGTTGTTTCCCATGCCACAATCTCATCGGATCGCCCTTATGCATCGCAGGTACATCACATTAATATTCATTTCCGCATGTTCACTTATCAGTCACACATAGTACTTAAATGGTTCAAATGTCGAGGGTACAACTAGTTAATTTGTCTGATTTCTAAAGAATGTTTTCTATAAGATAGAGGTCATGAAAGGCTTGTGGAGGATTTGTGTATTCAAATGGCCTTACATAGAAACAGAATAATGTTTTGCAGACAAAACAGATATCTTGAACTTTGAAGATACAGCTTTTCTCAATTTGGTTTTCCTACTAATTTTGTTTATTGGACCCTTGTTTGTCTGAAAATTATTTAACATGATTATTCCAAAATGTTACAAGAATAAATTCTCACTTGGATTAATTTAGGAAATTAGAAATATGAAGACTTGAGGAATGTGGATTACAATGTTGATCGTGTACCTTTAGGAATACTTTATTCGGCACATGGACGGATGCACACTTGATACAGAAGGGGAGAAAGAAAGGGTCATCAAATGCATTGAAGCTGCTATTCAAAGAAGAGTAAGCGAGGTAACTTACAGATTAAAATTGATTTCAGCTAGCAAGTCTTCCACGATTTGTGAAAGAACTTTTTTTTCTTCTTCTTCAAGAAACGAAGAATGTCTTAGTCTTAGTATTAAATTCTACGGATTTTGGACACAGGGTGTGAGCCTAGAGTTGTGTGCAAAGGATAGAGTGGGATTGCTCTCTGAAGTAACAAGAATTCTGAGAGAGAATGGCCTAACAGTTTGTAGGGCAGGTATATCAACCAGAGGGGAACAAGCTCTTAATGTCTTCTATGTGAGGGATGCATCAGGGAACTCAGTGGACATGAAGACTATAGAAGCACTTCGTAAAGAAATCGGTAAGACAATGATGGTAGATGTGAAGAAGGTACCAACATATGACAAAGAACCAGAGACACGAGGATGGGCTAAAACTAGCTTCTTCTTTGGTAACTTGTTGGAAAGGTTCTTGGCTTAA

Protein sequence

>MS.gene052926.t1

MAAVCWPYFDPEYENFSNKINPPRVSVDNASCHNCTLIKFDSVNKPGILLEVVQILTDLDFIITKAYISSDGGWFMDVFHVTDQQGKKITDSKTIDLIEKALGPKSQNKEEVKSWSGKWVGVHSVGDHIAIELIGRDRPGLLSEISAVLASLHFNVVVAEVWTHNRRIACVLYVNDGTRQAVDDQKRISLMEEQLNNILRGCEDGEKVASRTSLSMSFTHIDRRLHQMLFADRDYESYGVTTTDRECPPSFRPKITIECCEEKGYSVVNVRCKDRAKLMFDIVCTLTDMQYVVSHATISSDRPYASQEYFIRHMDGCTLDTEGEKERVIKCIEAAIQRRVSEGVSLELCAKDRVGLLSEVTRILRENGLTVCRAGISTRGEQALNVFYVRDASGNSVDMKTIEALRKEIGKTMMVDVKKVPTYDKEPETRGWAKTSFFFGNLLERFLA