Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23257.t1 | XP_003606904.1 | 98 | 256 | 4 | 1 | 1 | 255 | 1 | 256 | 1.90E-140 | 508.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23257.t1 | Q8GUH2 | 37.2 | 231 | 118 | 8 | 36 | 248 | 42 | 263 | 1.6e-28 | 127.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23257.t1 | G7JG61 | 98.0 | 256 | 4 | 1 | 1 | 255 | 1 | 256 | 1.3e-140 | 508.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene79923 | MS.gene23257 | PPI |
| MS.gene23257 | MS.gene019686 | PPI |
| MS.gene23257 | MS.gene000647 | PPI |
| MS.gene23257 | MS.gene92099 | PPI |
| MS.gene23257 | MS.gene056832 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23257.t1 | MTR_4g070020 | 98.047 | 256 | 4 | 1 | 1 | 255 | 1 | 256 | 0.0 | 517 |
| MS.gene23257.t1 | MTR_4g070020 | 97.881 | 236 | 4 | 1 | 1 | 235 | 1 | 236 | 4.82e-171 | 472 |
| MS.gene23257.t1 | MTR_1g022190 | 49.515 | 206 | 88 | 4 | 26 | 227 | 55 | 248 | 3.13e-63 | 199 |
| MS.gene23257.t1 | MTR_1g022190 | 45.607 | 239 | 109 | 6 | 26 | 255 | 30 | 256 | 3.43e-63 | 200 |
| MS.gene23257.t1 | MTR_1g022190 | 45.607 | 239 | 109 | 6 | 26 | 255 | 55 | 281 | 7.55e-63 | 200 |
| MS.gene23257.t1 | MTR_1g022190 | 45.607 | 239 | 109 | 6 | 26 | 255 | 60 | 286 | 1.09e-62 | 200 |
| MS.gene23257.t1 | MTR_8g028630 | 40.816 | 196 | 103 | 4 | 29 | 221 | 19 | 204 | 5.31e-38 | 136 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23257.t1 | AT1G19400 | 54.185 | 227 | 98 | 3 | 13 | 236 | 10 | 233 | 3.65e-80 | 241 |
| MS.gene23257.t1 | AT1G19400 | 52.033 | 246 | 111 | 4 | 13 | 255 | 10 | 251 | 3.87e-80 | 243 |
| MS.gene23257.t1 | AT1G19400 | 52.033 | 246 | 111 | 4 | 13 | 255 | 10 | 251 | 3.87e-80 | 243 |
| MS.gene23257.t1 | AT1G19400 | 52.033 | 246 | 111 | 4 | 13 | 255 | 10 | 251 | 3.87e-80 | 243 |
| MS.gene23257.t1 | AT1G75180 | 53.991 | 213 | 95 | 2 | 41 | 250 | 42 | 254 | 2.11e-74 | 229 |
| MS.gene23257.t1 | AT1G75180 | 53.991 | 213 | 95 | 2 | 41 | 250 | 42 | 254 | 2.11e-74 | 229 |
| MS.gene23257.t1 | AT1G75180 | 56.477 | 193 | 82 | 1 | 41 | 231 | 42 | 234 | 8.08e-74 | 225 |
| MS.gene23257.t1 | AT1G75180 | 56.477 | 193 | 82 | 1 | 41 | 231 | 42 | 234 | 8.98e-73 | 223 |
| MS.gene23257.t1 | AT1G01500 | 37.662 | 231 | 117 | 8 | 36 | 248 | 42 | 263 | 7.92e-37 | 132 |
Find 60 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAGGCACAAAGTTCTTTA+AGG | 0.155540 | 4.2:+36842495 | MS.gene23257:CDS |
| GATACCCTTCTTGAAGTTAA+TGG | 0.212761 | 4.2:+36842220 | MS.gene23257:CDS |
| GAGAATGATGCAAATGAAAA+TGG | 0.217056 | 4.2:+36842670 | MS.gene23257:CDS |
| TCCTTCTGCGCTTGCTTTGC+AGG | 0.233001 | 4.2:+36842699 | MS.gene23257:CDS |
| GAGAATTCGTATAAGGTTAA+TGG | 0.283457 | 4.2:+36842019 | MS.gene23257:CDS |
| GGAAATGGACCAAGTGAAAA+TGG | 0.283915 | 4.2:+36842040 | MS.gene23257:CDS |
| ATTGCTGTTACATAATTCTA+AGG | 0.316159 | 4.2:-36842407 | None:intergenic |
| CTCATATCAACCCTCGATAA+AGG | 0.321091 | 4.2:+36842087 | MS.gene23257:CDS |
| AGAAGGGTATCAGGATTTAA+AGG | 0.331368 | 4.2:-36842208 | None:intergenic |
| GGAGAAGCAATTGTTGTTGC+CGG | 0.344534 | 4.2:+36842516 | MS.gene23257:CDS |
| AAAGATAAGCTTCTTCTGTT+TGG | 0.350138 | 4.2:+36842382 | MS.gene23257:CDS |
| TTAACTTCAAGAAGGGTATC+AGG | 0.353127 | 4.2:-36842217 | None:intergenic |
| TCGTATAAGGTTAATGGAAA+TGG | 0.363071 | 4.2:+36842025 | MS.gene23257:CDS |
| GTTAGAGAATCAAATTCTAA+TGG | 0.378979 | 4.2:+36842436 | MS.gene23257:CDS |
| TATATTGCCGGGTCCTTCTC+TGG | 0.379377 | 4.2:+36842565 | MS.gene23257:CDS |
| CGTTACCGTGGTTAGACATA+AGG | 0.381604 | 4.2:+36842113 | MS.gene23257:CDS |
| ACAATTGAGGTCTATATTGC+CGG | 0.393367 | 4.2:+36842553 | MS.gene23257:CDS |
| TTGTAAGCACTGATAGTATA+AGG | 0.394406 | 4.2:+36842326 | MS.gene23257:CDS |
| TGTTTGTCATACATGTAATC+TGG | 0.402010 | 4.2:-36843430 | None:intergenic |
| CGCGATGGAGAATTCGTATA+AGG | 0.406902 | 4.2:+36842012 | None:intergenic |
| TTCTTGAAGTTAATGGTGTT+CGG | 0.422504 | 4.2:+36842227 | MS.gene23257:CDS |
| TGATTAAGTGTGAGAATCTC+AGG | 0.428692 | 4.2:-36842181 | None:intergenic |
| CGGAGTAGTTTATATTCTGA+TGG | 0.435949 | 4.2:+36842247 | MS.gene23257:CDS |
| GCAATATAGACCTCAATTGT+TGG | 0.437528 | 4.2:-36842550 | None:intergenic |
| GCGTATGCTGTCTTGTGTAT+AGG | 0.438957 | 4.2:-36843474 | None:intergenic |
| GGATTCCAACCCTTCTCAAA+AGG | 0.443968 | 4.2:+36842269 | MS.gene23257:CDS |
| TCCTTAAAGAACTTTGTGCC+TGG | 0.447833 | 4.2:-36842496 | None:intergenic |
| GGATAGGGTGGATAGAAAAT+CGG | 0.450168 | 4.2:+36842291 | MS.gene23257:CDS |
| TGTGAGTCGAATATAATTCC+AGG | 0.452189 | 4.2:+36842478 | MS.gene23257:CDS |
| TCATATCAACCCTCGATAAA+GGG | 0.470195 | 4.2:+36842088 | MS.gene23257:CDS |
| AGAATGATGCAAATGAAAAT+GGG | 0.470852 | 4.2:+36842671 | MS.gene23257:CDS |
| CAACCCTTCTCAAAAGGGAT+AGG | 0.480345 | 4.2:+36842275 | MS.gene23257:CDS |
| CAAATTCTAATGGACAAAGT+TGG | 0.492533 | 4.2:+36842446 | MS.gene23257:CDS |
| GTTACCGTGGTTAGACATAA+GGG | 0.505953 | 4.2:+36842114 | MS.gene23257:CDS |
| GATTCCAACCCTTCTCAAAA+GGG | 0.526688 | 4.2:+36842270 | MS.gene23257:CDS |
| GGAGTAGTTTATATTCTGAT+GGG | 0.528712 | 4.2:+36842248 | MS.gene23257:CDS |
| ACCTGCAAAGCAAGCGCAGA+AGG | 0.534939 | 4.2:-36842700 | None:intergenic |
| AACCCTTCTCAAAAGGGATA+GGG | 0.548703 | 4.2:+36842276 | MS.gene23257:CDS |
| GAGTGGTAGTGTGAAGTTTG+AGG | 0.549063 | 4.2:+36842351 | MS.gene23257:CDS |
| CTCTACTCTTCCAACAATTG+AGG | 0.556408 | 4.2:+36842540 | MS.gene23257:CDS |
| GAACACCATTAACTTCAAGA+AGG | 0.569037 | 4.2:-36842225 | None:intergenic |
| CAATTGAGGTCTATATTGCC+GGG | 0.582339 | 4.2:+36842554 | MS.gene23257:CDS |
| TCTGGAATTGCATTCAACGC+CGG | 0.588676 | 4.2:-36842649 | None:intergenic |
| AAAATGGATACTCTATTGCT+AGG | 0.589815 | 4.2:+36842056 | MS.gene23257:CDS |
| CGATAAAGGGTTCGTTACCG+TGG | 0.592561 | 4.2:+36842101 | MS.gene23257:CDS |
| AAGGTCTTCGTTAAGATGAT+CGG | 0.592566 | 4.2:-36842592 | None:intergenic |
| CGGAGTGCCAGAGAAGGACC+CGG | 0.592882 | 4.2:-36842572 | None:intergenic |
| GATGCAAATGAAAATGGGAA+AGG | 0.596141 | 4.2:+36842676 | MS.gene23257:CDS |
| AACACCATTAACTTCAAGAA+GGG | 0.596194 | 4.2:-36842224 | None:intergenic |
| CCTTCTCAAAAGGGATAGGG+TGG | 0.600087 | 4.2:+36842279 | MS.gene23257:CDS |
| ATTGTTGGAAGAGTAGAGTC+CGG | 0.603903 | 4.2:-36842535 | None:intergenic |
| CGGTAACGAACCCTTTATCG+AGG | 0.628590 | 4.2:-36842098 | None:intergenic |
| ACTGATAGTATAAGGATGAG+TGG | 0.634943 | 4.2:+36842334 | MS.gene23257:CDS |
| CATGATGATGAGGATTATCA+CGG | 0.635768 | 4.2:+36843451 | MS.gene23257:CDS |
| GATGATCGGAGTGCCAGAGA+AGG | 0.637274 | 4.2:-36842578 | None:intergenic |
| GGTAACGAACCCTTTATCGA+GGG | 0.642976 | 4.2:-36842097 | None:intergenic |
| AACACCCTTATGTCTAACCA+CGG | 0.647619 | 4.2:-36842118 | None:intergenic |
| TTAGAATTATGTAACAGCAA+TGG | 0.648523 | 4.2:+36842409 | MS.gene23257:CDS |
| AAGTGTGAGAATCTCAGGAG+TGG | 0.662685 | 4.2:-36842176 | None:intergenic |
| GTATGACAAACATGATGATG+AGG | 0.669080 | 4.2:+36843441 | MS.gene23257:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGCATTTACATAAAATAATA+AGG | - | chr4.2:36843403-36843422 | None:intergenic | 15.0% |
| !!! | AAATTTTTAAAATCTTGTCA+AGG | - | chr4.2:36843313-36843332 | None:intergenic | 15.0% |
| !! | ATTTAAATAAGCACATGAAA+AGG | - | chr4.2:36842748-36842767 | None:intergenic | 20.0% |
| !! | GATATAACTGTAAATTATCT+TGG | + | chr4.2:36843143-36843162 | MS.gene23257:intron | 20.0% |
| !!! | AGGAATTATCTATAATTTGT+TGG | - | chr4.2:36843383-36843402 | None:intergenic | 20.0% |
| !!! | GGAATTATCTATAATTTGTT+GGG | - | chr4.2:36843382-36843401 | None:intergenic | 20.0% |
| ! | AGAATGATGCAAATGAAAAT+GGG | + | chr4.2:36842671-36842690 | MS.gene23257:CDS | 25.0% |
| ! | ATATTTATGACCAAACCAAA+TGG | + | chr4.2:36843333-36843352 | MS.gene23257:intron | 25.0% |
| ! | GTTAGAGAATCAAATTCTAA+TGG | + | chr4.2:36842436-36842455 | MS.gene23257:CDS | 25.0% |
| ! | TTAGAATTATGTAACAGCAA+TGG | + | chr4.2:36842409-36842428 | MS.gene23257:CDS | 25.0% |
| ! | TTCTTCATAAGATTTCCATT+TGG | - | chr4.2:36843351-36843370 | None:intergenic | 25.0% |
| !! | ATTGCTGTTACATAATTCTA+AGG | - | chr4.2:36842410-36842429 | None:intergenic | 25.0% |
| !! | TACAAAGTGTTCTTAAATAG+TGG | + | chr4.2:36842918-36842937 | MS.gene23257:intron | 25.0% |
| !!! | TCTATAATTTGTTGGGAAAA+TGG | - | chr4.2:36843375-36843394 | None:intergenic | 25.0% |
| !!! | TTATTTTATGTAAATGCTGC+AGG | + | chr4.2:36843405-36843424 | MS.gene23257:intron | 25.0% |
| AAAATGGATACTCTATTGCT+AGG | + | chr4.2:36842056-36842075 | MS.gene23257:CDS | 30.0% | |
| AAAGATAAGCTTCTTCTGTT+TGG | + | chr4.2:36842382-36842401 | MS.gene23257:CDS | 30.0% | |
| AACACCATTAACTTCAAGAA+GGG | - | chr4.2:36842227-36842246 | None:intergenic | 30.0% | |
| ATTCAAGCAACAAGTTAACA+AGG | - | chr4.2:36842800-36842819 | None:intergenic | 30.0% | |
| CATAAGATTTCCATTTGGTT+TGG | - | chr4.2:36843346-36843365 | None:intergenic | 30.0% | |
| GAGAATGATGCAAATGAAAA+TGG | + | chr4.2:36842670-36842689 | MS.gene23257:CDS | 30.0% | |
| GAGAATTCGTATAAGGTTAA+TGG | + | chr4.2:36842019-36842038 | MS.gene23257:CDS | 30.0% | |
| GGAGTAGTTTATATTCTGAT+GGG | + | chr4.2:36842248-36842267 | MS.gene23257:CDS | 30.0% | |
| GTTCTCAAAAAAGACATACA+AGG | + | chr4.2:36842623-36842642 | MS.gene23257:CDS | 30.0% | |
| TCGTATAAGGTTAATGGAAA+TGG | + | chr4.2:36842025-36842044 | MS.gene23257:CDS | 30.0% | |
| TGTTTGTCATACATGTAATC+TGG | - | chr4.2:36843433-36843452 | None:intergenic | 30.0% | |
| TTCTTGAAGTTAATGGTGTT+CGG | + | chr4.2:36842227-36842246 | MS.gene23257:CDS | 30.0% | |
| ! | CAAATTCTAATGGACAAAGT+TGG | + | chr4.2:36842446-36842465 | MS.gene23257:CDS | 30.0% |
| ! | GATTTGTTCAAATCCCTAAA+GGG | - | chr4.2:36842871-36842890 | None:intergenic | 30.0% |
| ! | TTTTCATTTGCATCATTCTC+TGG | - | chr4.2:36842670-36842689 | None:intergenic | 30.0% |
| !! | ATAGAGTATCCATTTTCACT+TGG | - | chr4.2:36842052-36842071 | None:intergenic | 30.0% |
| !! | ATTGGCTCAACGTAATTTTA+TGG | + | chr4.2:36843028-36843047 | MS.gene23257:intron | 30.0% |
| !! | TTGTAAGCACTGATAGTATA+AGG | + | chr4.2:36842326-36842345 | MS.gene23257:CDS | 30.0% |
| !! | TTTTTGAGAACTAAGATGCA+AGG | - | chr4.2:36842614-36842633 | None:intergenic | 30.0% |
| !!! | ACATAAGGGTGTTTTATGTA+AGG | + | chr4.2:36842128-36842147 | MS.gene23257:CDS | 30.0% |
| !!! | CATAAGGGTGTTTTATGTAA+GGG | + | chr4.2:36842129-36842148 | MS.gene23257:CDS | 30.0% |
| AAAAAGACATACAAGGAAGC+CGG | + | chr4.2:36842630-36842649 | MS.gene23257:CDS | 35.0% | |
| AAGGTCTTCGTTAAGATGAT+CGG | - | chr4.2:36842595-36842614 | None:intergenic | 35.0% | |
| ACAATTGAGGTCTATATTGC+CGG | + | chr4.2:36842553-36842572 | MS.gene23257:CDS | 35.0% | |
| ACTGATAGTATAAGGATGAG+TGG | + | chr4.2:36842334-36842353 | MS.gene23257:CDS | 35.0% | |
| ATTATGTTCCATCTCCTACT+AGG | - | chr4.2:36843115-36843134 | None:intergenic | 35.0% | |
| CGGAGTAGTTTATATTCTGA+TGG | + | chr4.2:36842247-36842266 | MS.gene23257:CDS | 35.0% | |
| GAACACCATTAACTTCAAGA+AGG | - | chr4.2:36842228-36842247 | None:intergenic | 35.0% | |
| GATACCCTTCTTGAAGTTAA+TGG | + | chr4.2:36842220-36842239 | MS.gene23257:CDS | 35.0% | |
| GATGCAAATGAAAATGGGAA+AGG | + | chr4.2:36842676-36842695 | MS.gene23257:CDS | 35.0% | |
| GCAATATAGACCTCAATTGT+TGG | - | chr4.2:36842553-36842572 | None:intergenic | 35.0% | |
| TCATATCAACCCTCGATAAA+GGG | + | chr4.2:36842088-36842107 | MS.gene23257:CDS | 35.0% | |
| TGATATGCGATTGACAATAC+AGG | + | chr4.2:36842990-36843009 | MS.gene23257:intron | 35.0% | |
| TGATTAAGTGTGAGAATCTC+AGG | - | chr4.2:36842184-36842203 | None:intergenic | 35.0% | |
| TGTGAGTCGAATATAATTCC+AGG | + | chr4.2:36842478-36842497 | MS.gene23257:CDS | 35.0% | |
| TTTGAGAAATAGCTATCCTC+CGG | + | chr4.2:36843223-36843242 | MS.gene23257:intron | 35.0% | |
| ! | AACTATTTTCATCACTCGTC+AGG | - | chr4.2:36843289-36843308 | None:intergenic | 35.0% |
| ! | ATGCACTGACATAGTTAAAG+AGG | - | chr4.2:36842774-36842793 | None:intergenic | 35.0% |
| ! | CATGATGATGAGGATTATCA+CGG | + | chr4.2:36843451-36843470 | MS.gene23257:CDS | 35.0% |
| ! | CGATTTGTTCAAATCCCTAA+AGG | - | chr4.2:36842872-36842891 | None:intergenic | 35.0% |
| ! | GTATGACAAACATGATGATG+AGG | + | chr4.2:36843441-36843460 | MS.gene23257:CDS | 35.0% |
| !! | AGAAGGGTATCAGGATTTAA+AGG | - | chr4.2:36842211-36842230 | None:intergenic | 35.0% |
| !! | TTAACTTCAAGAAGGGTATC+AGG | - | chr4.2:36842220-36842239 | None:intergenic | 35.0% |
| !! | TTATCTTGGCTCTTTTTCTG+AGG | + | chr4.2:36843157-36843176 | MS.gene23257:intron | 35.0% |
| AACACCCTTATGTCTAACCA+CGG | - | chr4.2:36842121-36842140 | None:intergenic | 40.0% | |
| AACCCTTCTCAAAAGGGATA+GGG | + | chr4.2:36842276-36842295 | MS.gene23257:CDS | 40.0% | |
| AATAGTGTATCGCAGAACAG+TGG | - | chr4.2:36842895-36842914 | None:intergenic | 40.0% | |
| ATTGTTGGAAGAGTAGAGTC+CGG | - | chr4.2:36842538-36842557 | None:intergenic | 40.0% | |
| CAATTGAGGTCTATATTGCC+GGG | + | chr4.2:36842554-36842573 | MS.gene23257:CDS | 40.0% | |
| CTCATATCAACCCTCGATAA+AGG | + | chr4.2:36842087-36842106 | MS.gene23257:CDS | 40.0% | |
| CTCTACTCTTCCAACAATTG+AGG | + | chr4.2:36842540-36842559 | MS.gene23257:CDS | 40.0% | |
| GATTCCAACCCTTCTCAAAA+GGG | + | chr4.2:36842270-36842289 | MS.gene23257:CDS | 40.0% | |
| GCTATGGCATTGTACTTTAG+TGG | + | chr4.2:36842942-36842961 | MS.gene23257:intron | 40.0% | |
| GGAAATGGACCAAGTGAAAA+TGG | + | chr4.2:36842040-36842059 | MS.gene23257:CDS | 40.0% | |
| GGAGTCGTTTGAATATGACA+TGG | + | chr4.2:36843049-36843068 | MS.gene23257:intron | 40.0% | |
| GGATAGGGTGGATAGAAAAT+CGG | + | chr4.2:36842291-36842310 | MS.gene23257:CDS | 40.0% | |
| GTTACCGTGGTTAGACATAA+GGG | + | chr4.2:36842114-36842133 | MS.gene23257:CDS | 40.0% | |
| GTTCTTAAATAGTGGCGCTA+TGG | + | chr4.2:36842926-36842945 | MS.gene23257:intron | 40.0% | |
| TCCAGGCACAAAGTTCTTTA+AGG | + | chr4.2:36842495-36842514 | MS.gene23257:CDS | 40.0% | |
| TCCTTAAAGAACTTTGTGCC+TGG | - | chr4.2:36842499-36842518 | None:intergenic | 40.0% | |
| ! | AGGTCTAGCGTTGCTTTAAT+TGG | + | chr4.2:36843010-36843029 | MS.gene23257:intron | 40.0% |
| AAGTGTGAGAATCTCAGGAG+TGG | - | chr4.2:36842179-36842198 | None:intergenic | 45.0% | |
| ACTATAGCGCTATGCCCTTT+AGG | + | chr4.2:36842854-36842873 | MS.gene23257:intron | 45.0% | |
| AGTGCCGCAATTTGACAACA+CGG | - | chr4.2:36842837-36842856 | None:intergenic | 45.0% | |
| CAACCCTTCTCAAAAGGGAT+AGG | + | chr4.2:36842275-36842294 | MS.gene23257:CDS | 45.0% | |
| CGTTACCGTGGTTAGACATA+AGG | + | chr4.2:36842113-36842132 | MS.gene23257:CDS | 45.0% | |
| CTATAGCGCTATGCCCTTTA+GGG | + | chr4.2:36842855-36842874 | MS.gene23257:intron | 45.0% | |
| GACTCCGTGTTGTCAAATTG+CGG | + | chr4.2:36842830-36842849 | MS.gene23257:intron | 45.0% | |
| GACTGATGTCACAACCTAGT+AGG | + | chr4.2:36843098-36843117 | MS.gene23257:intron | 45.0% | |
| GGATTCCAACCCTTCTCAAA+AGG | + | chr4.2:36842269-36842288 | MS.gene23257:CDS | 45.0% | |
| GGTAACGAACCCTTTATCGA+GGG | - | chr4.2:36842100-36842119 | None:intergenic | 45.0% | |
| TGTCACAACCTAGTAGGAGA+TGG | + | chr4.2:36843104-36843123 | MS.gene23257:intron | 45.0% | |
| ! | GAGTGGTAGTGTGAAGTTTG+AGG | + | chr4.2:36842351-36842370 | MS.gene23257:CDS | 45.0% |
| ! | GGAGAAGCAATTGTTGTTGC+CGG | + | chr4.2:36842516-36842535 | MS.gene23257:CDS | 45.0% |
| ! | TCTGGAATTGCATTCAACGC+CGG | - | chr4.2:36842652-36842671 | None:intergenic | 45.0% |
| !! | CACCCTATCCCTTTTGAGAA+GGG | - | chr4.2:36842281-36842300 | None:intergenic | 45.0% |
| !! | CTATCCCTTTTGAGAAGGGT+TGG | - | chr4.2:36842277-36842296 | None:intergenic | 45.0% |
| CCTTCTCAAAAGGGATAGGG+TGG | + | chr4.2:36842279-36842298 | MS.gene23257:CDS | 50.0% | |
| CGATAAAGGGTTCGTTACCG+TGG | + | chr4.2:36842101-36842120 | MS.gene23257:CDS | 50.0% | |
| CGGTAACGAACCCTTTATCG+AGG | - | chr4.2:36842101-36842120 | None:intergenic | 50.0% | |
| TATATTGCCGGGTCCTTCTC+TGG | + | chr4.2:36842565-36842584 | MS.gene23257:CDS | 50.0% | |
| TGACAACACGGAGTCACACA+TGG | - | chr4.2:36842825-36842844 | None:intergenic | 50.0% | |
| !! | CCACCCTATCCCTTTTGAGA+AGG | - | chr4.2:36842282-36842301 | None:intergenic | 50.0% |
| ACCTGCAAAGCAAGCGCAGA+AGG | - | chr4.2:36842703-36842722 | None:intergenic | 55.0% | |
| TCCTTCTGCGCTTGCTTTGC+AGG | + | chr4.2:36842699-36842718 | MS.gene23257:CDS | 55.0% | |
| ! | GATGATCGGAGTGCCAGAGA+AGG | - | chr4.2:36842581-36842600 | None:intergenic | 55.0% |
| GCCTGCATGTGCTCTCGAGC+CGG | - | chr4.2:36843245-36843264 | None:intergenic | 65.0% | |
| TGCATGTGCTCTCGAGCCGG+AGG | - | chr4.2:36843242-36843261 | None:intergenic | 65.0% | |
| ! | CGGAGTGCCAGAGAAGGACC+CGG | - | chr4.2:36842575-36842594 | None:intergenic | 65.0% |
| ! | TCCGGCTCGAGAGCACATGC+AGG | + | chr4.2:36843241-36843260 | MS.gene23257:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 36842016 | 36843488 | 36842016 | ID=MS.gene23257 |
| chr4.2 | mRNA | 36842016 | 36843488 | 36842016 | ID=MS.gene23257.t1;Parent=MS.gene23257 |
| chr4.2 | exon | 36842016 | 36842720 | 36842016 | ID=MS.gene23257.t1.exon1;Parent=MS.gene23257.t1 |
| chr4.2 | CDS | 36842016 | 36842720 | 36842016 | ID=cds.MS.gene23257.t1;Parent=MS.gene23257.t1 |
| chr4.2 | exon | 36843427 | 36843488 | 36843427 | ID=MS.gene23257.t1.exon2;Parent=MS.gene23257.t1 |
| chr4.2 | CDS | 36843427 | 36843488 | 36843427 | ID=cds.MS.gene23257.t1;Parent=MS.gene23257.t1 |
| Gene Sequence |
| Protein sequence |