Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23257.t1 | XP_003606904.1 | 98 | 256 | 4 | 1 | 1 | 255 | 1 | 256 | 1.90E-140 | 508.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23257.t1 | Q8GUH2 | 37.2 | 231 | 118 | 8 | 36 | 248 | 42 | 263 | 1.6e-28 | 127.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23257.t1 | G7JG61 | 98.0 | 256 | 4 | 1 | 1 | 255 | 1 | 256 | 1.3e-140 | 508.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene79923 | MS.gene23257 | PPI |
MS.gene23257 | MS.gene019686 | PPI |
MS.gene23257 | MS.gene000647 | PPI |
MS.gene23257 | MS.gene92099 | PPI |
MS.gene23257 | MS.gene056832 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23257.t1 | MTR_4g070020 | 98.047 | 256 | 4 | 1 | 1 | 255 | 1 | 256 | 0.0 | 517 |
MS.gene23257.t1 | MTR_4g070020 | 97.881 | 236 | 4 | 1 | 1 | 235 | 1 | 236 | 4.82e-171 | 472 |
MS.gene23257.t1 | MTR_1g022190 | 49.515 | 206 | 88 | 4 | 26 | 227 | 55 | 248 | 3.13e-63 | 199 |
MS.gene23257.t1 | MTR_1g022190 | 45.607 | 239 | 109 | 6 | 26 | 255 | 30 | 256 | 3.43e-63 | 200 |
MS.gene23257.t1 | MTR_1g022190 | 45.607 | 239 | 109 | 6 | 26 | 255 | 55 | 281 | 7.55e-63 | 200 |
MS.gene23257.t1 | MTR_1g022190 | 45.607 | 239 | 109 | 6 | 26 | 255 | 60 | 286 | 1.09e-62 | 200 |
MS.gene23257.t1 | MTR_8g028630 | 40.816 | 196 | 103 | 4 | 29 | 221 | 19 | 204 | 5.31e-38 | 136 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23257.t1 | AT1G19400 | 54.185 | 227 | 98 | 3 | 13 | 236 | 10 | 233 | 3.65e-80 | 241 |
MS.gene23257.t1 | AT1G19400 | 52.033 | 246 | 111 | 4 | 13 | 255 | 10 | 251 | 3.87e-80 | 243 |
MS.gene23257.t1 | AT1G19400 | 52.033 | 246 | 111 | 4 | 13 | 255 | 10 | 251 | 3.87e-80 | 243 |
MS.gene23257.t1 | AT1G19400 | 52.033 | 246 | 111 | 4 | 13 | 255 | 10 | 251 | 3.87e-80 | 243 |
MS.gene23257.t1 | AT1G75180 | 53.991 | 213 | 95 | 2 | 41 | 250 | 42 | 254 | 2.11e-74 | 229 |
MS.gene23257.t1 | AT1G75180 | 53.991 | 213 | 95 | 2 | 41 | 250 | 42 | 254 | 2.11e-74 | 229 |
MS.gene23257.t1 | AT1G75180 | 56.477 | 193 | 82 | 1 | 41 | 231 | 42 | 234 | 8.08e-74 | 225 |
MS.gene23257.t1 | AT1G75180 | 56.477 | 193 | 82 | 1 | 41 | 231 | 42 | 234 | 8.98e-73 | 223 |
MS.gene23257.t1 | AT1G01500 | 37.662 | 231 | 117 | 8 | 36 | 248 | 42 | 263 | 7.92e-37 | 132 |
Find 60 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCAGGCACAAAGTTCTTTA+AGG | 0.155540 | 4.2:+36842495 | MS.gene23257:CDS |
GATACCCTTCTTGAAGTTAA+TGG | 0.212761 | 4.2:+36842220 | MS.gene23257:CDS |
GAGAATGATGCAAATGAAAA+TGG | 0.217056 | 4.2:+36842670 | MS.gene23257:CDS |
TCCTTCTGCGCTTGCTTTGC+AGG | 0.233001 | 4.2:+36842699 | MS.gene23257:CDS |
GAGAATTCGTATAAGGTTAA+TGG | 0.283457 | 4.2:+36842019 | MS.gene23257:CDS |
GGAAATGGACCAAGTGAAAA+TGG | 0.283915 | 4.2:+36842040 | MS.gene23257:CDS |
ATTGCTGTTACATAATTCTA+AGG | 0.316159 | 4.2:-36842407 | None:intergenic |
CTCATATCAACCCTCGATAA+AGG | 0.321091 | 4.2:+36842087 | MS.gene23257:CDS |
AGAAGGGTATCAGGATTTAA+AGG | 0.331368 | 4.2:-36842208 | None:intergenic |
GGAGAAGCAATTGTTGTTGC+CGG | 0.344534 | 4.2:+36842516 | MS.gene23257:CDS |
AAAGATAAGCTTCTTCTGTT+TGG | 0.350138 | 4.2:+36842382 | MS.gene23257:CDS |
TTAACTTCAAGAAGGGTATC+AGG | 0.353127 | 4.2:-36842217 | None:intergenic |
TCGTATAAGGTTAATGGAAA+TGG | 0.363071 | 4.2:+36842025 | MS.gene23257:CDS |
GTTAGAGAATCAAATTCTAA+TGG | 0.378979 | 4.2:+36842436 | MS.gene23257:CDS |
TATATTGCCGGGTCCTTCTC+TGG | 0.379377 | 4.2:+36842565 | MS.gene23257:CDS |
CGTTACCGTGGTTAGACATA+AGG | 0.381604 | 4.2:+36842113 | MS.gene23257:CDS |
ACAATTGAGGTCTATATTGC+CGG | 0.393367 | 4.2:+36842553 | MS.gene23257:CDS |
TTGTAAGCACTGATAGTATA+AGG | 0.394406 | 4.2:+36842326 | MS.gene23257:CDS |
TGTTTGTCATACATGTAATC+TGG | 0.402010 | 4.2:-36843430 | None:intergenic |
CGCGATGGAGAATTCGTATA+AGG | 0.406902 | 4.2:+36842012 | None:intergenic |
TTCTTGAAGTTAATGGTGTT+CGG | 0.422504 | 4.2:+36842227 | MS.gene23257:CDS |
TGATTAAGTGTGAGAATCTC+AGG | 0.428692 | 4.2:-36842181 | None:intergenic |
CGGAGTAGTTTATATTCTGA+TGG | 0.435949 | 4.2:+36842247 | MS.gene23257:CDS |
GCAATATAGACCTCAATTGT+TGG | 0.437528 | 4.2:-36842550 | None:intergenic |
GCGTATGCTGTCTTGTGTAT+AGG | 0.438957 | 4.2:-36843474 | None:intergenic |
GGATTCCAACCCTTCTCAAA+AGG | 0.443968 | 4.2:+36842269 | MS.gene23257:CDS |
TCCTTAAAGAACTTTGTGCC+TGG | 0.447833 | 4.2:-36842496 | None:intergenic |
GGATAGGGTGGATAGAAAAT+CGG | 0.450168 | 4.2:+36842291 | MS.gene23257:CDS |
TGTGAGTCGAATATAATTCC+AGG | 0.452189 | 4.2:+36842478 | MS.gene23257:CDS |
TCATATCAACCCTCGATAAA+GGG | 0.470195 | 4.2:+36842088 | MS.gene23257:CDS |
AGAATGATGCAAATGAAAAT+GGG | 0.470852 | 4.2:+36842671 | MS.gene23257:CDS |
CAACCCTTCTCAAAAGGGAT+AGG | 0.480345 | 4.2:+36842275 | MS.gene23257:CDS |
CAAATTCTAATGGACAAAGT+TGG | 0.492533 | 4.2:+36842446 | MS.gene23257:CDS |
GTTACCGTGGTTAGACATAA+GGG | 0.505953 | 4.2:+36842114 | MS.gene23257:CDS |
GATTCCAACCCTTCTCAAAA+GGG | 0.526688 | 4.2:+36842270 | MS.gene23257:CDS |
GGAGTAGTTTATATTCTGAT+GGG | 0.528712 | 4.2:+36842248 | MS.gene23257:CDS |
ACCTGCAAAGCAAGCGCAGA+AGG | 0.534939 | 4.2:-36842700 | None:intergenic |
AACCCTTCTCAAAAGGGATA+GGG | 0.548703 | 4.2:+36842276 | MS.gene23257:CDS |
GAGTGGTAGTGTGAAGTTTG+AGG | 0.549063 | 4.2:+36842351 | MS.gene23257:CDS |
CTCTACTCTTCCAACAATTG+AGG | 0.556408 | 4.2:+36842540 | MS.gene23257:CDS |
GAACACCATTAACTTCAAGA+AGG | 0.569037 | 4.2:-36842225 | None:intergenic |
CAATTGAGGTCTATATTGCC+GGG | 0.582339 | 4.2:+36842554 | MS.gene23257:CDS |
TCTGGAATTGCATTCAACGC+CGG | 0.588676 | 4.2:-36842649 | None:intergenic |
AAAATGGATACTCTATTGCT+AGG | 0.589815 | 4.2:+36842056 | MS.gene23257:CDS |
CGATAAAGGGTTCGTTACCG+TGG | 0.592561 | 4.2:+36842101 | MS.gene23257:CDS |
AAGGTCTTCGTTAAGATGAT+CGG | 0.592566 | 4.2:-36842592 | None:intergenic |
CGGAGTGCCAGAGAAGGACC+CGG | 0.592882 | 4.2:-36842572 | None:intergenic |
GATGCAAATGAAAATGGGAA+AGG | 0.596141 | 4.2:+36842676 | MS.gene23257:CDS |
AACACCATTAACTTCAAGAA+GGG | 0.596194 | 4.2:-36842224 | None:intergenic |
CCTTCTCAAAAGGGATAGGG+TGG | 0.600087 | 4.2:+36842279 | MS.gene23257:CDS |
ATTGTTGGAAGAGTAGAGTC+CGG | 0.603903 | 4.2:-36842535 | None:intergenic |
CGGTAACGAACCCTTTATCG+AGG | 0.628590 | 4.2:-36842098 | None:intergenic |
ACTGATAGTATAAGGATGAG+TGG | 0.634943 | 4.2:+36842334 | MS.gene23257:CDS |
CATGATGATGAGGATTATCA+CGG | 0.635768 | 4.2:+36843451 | MS.gene23257:CDS |
GATGATCGGAGTGCCAGAGA+AGG | 0.637274 | 4.2:-36842578 | None:intergenic |
GGTAACGAACCCTTTATCGA+GGG | 0.642976 | 4.2:-36842097 | None:intergenic |
AACACCCTTATGTCTAACCA+CGG | 0.647619 | 4.2:-36842118 | None:intergenic |
TTAGAATTATGTAACAGCAA+TGG | 0.648523 | 4.2:+36842409 | MS.gene23257:CDS |
AAGTGTGAGAATCTCAGGAG+TGG | 0.662685 | 4.2:-36842176 | None:intergenic |
GTATGACAAACATGATGATG+AGG | 0.669080 | 4.2:+36843441 | MS.gene23257:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGCATTTACATAAAATAATA+AGG | - | chr4.2:36843403-36843422 | None:intergenic | 15.0% |
!!! | AAATTTTTAAAATCTTGTCA+AGG | - | chr4.2:36843313-36843332 | None:intergenic | 15.0% |
!! | ATTTAAATAAGCACATGAAA+AGG | - | chr4.2:36842748-36842767 | None:intergenic | 20.0% |
!! | GATATAACTGTAAATTATCT+TGG | + | chr4.2:36843143-36843162 | MS.gene23257:intron | 20.0% |
!!! | AGGAATTATCTATAATTTGT+TGG | - | chr4.2:36843383-36843402 | None:intergenic | 20.0% |
!!! | GGAATTATCTATAATTTGTT+GGG | - | chr4.2:36843382-36843401 | None:intergenic | 20.0% |
! | AGAATGATGCAAATGAAAAT+GGG | + | chr4.2:36842671-36842690 | MS.gene23257:CDS | 25.0% |
! | ATATTTATGACCAAACCAAA+TGG | + | chr4.2:36843333-36843352 | MS.gene23257:intron | 25.0% |
! | GTTAGAGAATCAAATTCTAA+TGG | + | chr4.2:36842436-36842455 | MS.gene23257:CDS | 25.0% |
! | TTAGAATTATGTAACAGCAA+TGG | + | chr4.2:36842409-36842428 | MS.gene23257:CDS | 25.0% |
! | TTCTTCATAAGATTTCCATT+TGG | - | chr4.2:36843351-36843370 | None:intergenic | 25.0% |
!! | ATTGCTGTTACATAATTCTA+AGG | - | chr4.2:36842410-36842429 | None:intergenic | 25.0% |
!! | TACAAAGTGTTCTTAAATAG+TGG | + | chr4.2:36842918-36842937 | MS.gene23257:intron | 25.0% |
!!! | TCTATAATTTGTTGGGAAAA+TGG | - | chr4.2:36843375-36843394 | None:intergenic | 25.0% |
!!! | TTATTTTATGTAAATGCTGC+AGG | + | chr4.2:36843405-36843424 | MS.gene23257:intron | 25.0% |
AAAATGGATACTCTATTGCT+AGG | + | chr4.2:36842056-36842075 | MS.gene23257:CDS | 30.0% | |
AAAGATAAGCTTCTTCTGTT+TGG | + | chr4.2:36842382-36842401 | MS.gene23257:CDS | 30.0% | |
AACACCATTAACTTCAAGAA+GGG | - | chr4.2:36842227-36842246 | None:intergenic | 30.0% | |
ATTCAAGCAACAAGTTAACA+AGG | - | chr4.2:36842800-36842819 | None:intergenic | 30.0% | |
CATAAGATTTCCATTTGGTT+TGG | - | chr4.2:36843346-36843365 | None:intergenic | 30.0% | |
GAGAATGATGCAAATGAAAA+TGG | + | chr4.2:36842670-36842689 | MS.gene23257:CDS | 30.0% | |
GAGAATTCGTATAAGGTTAA+TGG | + | chr4.2:36842019-36842038 | MS.gene23257:CDS | 30.0% | |
GGAGTAGTTTATATTCTGAT+GGG | + | chr4.2:36842248-36842267 | MS.gene23257:CDS | 30.0% | |
GTTCTCAAAAAAGACATACA+AGG | + | chr4.2:36842623-36842642 | MS.gene23257:CDS | 30.0% | |
TCGTATAAGGTTAATGGAAA+TGG | + | chr4.2:36842025-36842044 | MS.gene23257:CDS | 30.0% | |
TGTTTGTCATACATGTAATC+TGG | - | chr4.2:36843433-36843452 | None:intergenic | 30.0% | |
TTCTTGAAGTTAATGGTGTT+CGG | + | chr4.2:36842227-36842246 | MS.gene23257:CDS | 30.0% | |
! | CAAATTCTAATGGACAAAGT+TGG | + | chr4.2:36842446-36842465 | MS.gene23257:CDS | 30.0% |
! | GATTTGTTCAAATCCCTAAA+GGG | - | chr4.2:36842871-36842890 | None:intergenic | 30.0% |
! | TTTTCATTTGCATCATTCTC+TGG | - | chr4.2:36842670-36842689 | None:intergenic | 30.0% |
!! | ATAGAGTATCCATTTTCACT+TGG | - | chr4.2:36842052-36842071 | None:intergenic | 30.0% |
!! | ATTGGCTCAACGTAATTTTA+TGG | + | chr4.2:36843028-36843047 | MS.gene23257:intron | 30.0% |
!! | TTGTAAGCACTGATAGTATA+AGG | + | chr4.2:36842326-36842345 | MS.gene23257:CDS | 30.0% |
!! | TTTTTGAGAACTAAGATGCA+AGG | - | chr4.2:36842614-36842633 | None:intergenic | 30.0% |
!!! | ACATAAGGGTGTTTTATGTA+AGG | + | chr4.2:36842128-36842147 | MS.gene23257:CDS | 30.0% |
!!! | CATAAGGGTGTTTTATGTAA+GGG | + | chr4.2:36842129-36842148 | MS.gene23257:CDS | 30.0% |
AAAAAGACATACAAGGAAGC+CGG | + | chr4.2:36842630-36842649 | MS.gene23257:CDS | 35.0% | |
AAGGTCTTCGTTAAGATGAT+CGG | - | chr4.2:36842595-36842614 | None:intergenic | 35.0% | |
ACAATTGAGGTCTATATTGC+CGG | + | chr4.2:36842553-36842572 | MS.gene23257:CDS | 35.0% | |
ACTGATAGTATAAGGATGAG+TGG | + | chr4.2:36842334-36842353 | MS.gene23257:CDS | 35.0% | |
ATTATGTTCCATCTCCTACT+AGG | - | chr4.2:36843115-36843134 | None:intergenic | 35.0% | |
CGGAGTAGTTTATATTCTGA+TGG | + | chr4.2:36842247-36842266 | MS.gene23257:CDS | 35.0% | |
GAACACCATTAACTTCAAGA+AGG | - | chr4.2:36842228-36842247 | None:intergenic | 35.0% | |
GATACCCTTCTTGAAGTTAA+TGG | + | chr4.2:36842220-36842239 | MS.gene23257:CDS | 35.0% | |
GATGCAAATGAAAATGGGAA+AGG | + | chr4.2:36842676-36842695 | MS.gene23257:CDS | 35.0% | |
GCAATATAGACCTCAATTGT+TGG | - | chr4.2:36842553-36842572 | None:intergenic | 35.0% | |
TCATATCAACCCTCGATAAA+GGG | + | chr4.2:36842088-36842107 | MS.gene23257:CDS | 35.0% | |
TGATATGCGATTGACAATAC+AGG | + | chr4.2:36842990-36843009 | MS.gene23257:intron | 35.0% | |
TGATTAAGTGTGAGAATCTC+AGG | - | chr4.2:36842184-36842203 | None:intergenic | 35.0% | |
TGTGAGTCGAATATAATTCC+AGG | + | chr4.2:36842478-36842497 | MS.gene23257:CDS | 35.0% | |
TTTGAGAAATAGCTATCCTC+CGG | + | chr4.2:36843223-36843242 | MS.gene23257:intron | 35.0% | |
! | AACTATTTTCATCACTCGTC+AGG | - | chr4.2:36843289-36843308 | None:intergenic | 35.0% |
! | ATGCACTGACATAGTTAAAG+AGG | - | chr4.2:36842774-36842793 | None:intergenic | 35.0% |
! | CATGATGATGAGGATTATCA+CGG | + | chr4.2:36843451-36843470 | MS.gene23257:CDS | 35.0% |
! | CGATTTGTTCAAATCCCTAA+AGG | - | chr4.2:36842872-36842891 | None:intergenic | 35.0% |
! | GTATGACAAACATGATGATG+AGG | + | chr4.2:36843441-36843460 | MS.gene23257:CDS | 35.0% |
!! | AGAAGGGTATCAGGATTTAA+AGG | - | chr4.2:36842211-36842230 | None:intergenic | 35.0% |
!! | TTAACTTCAAGAAGGGTATC+AGG | - | chr4.2:36842220-36842239 | None:intergenic | 35.0% |
!! | TTATCTTGGCTCTTTTTCTG+AGG | + | chr4.2:36843157-36843176 | MS.gene23257:intron | 35.0% |
AACACCCTTATGTCTAACCA+CGG | - | chr4.2:36842121-36842140 | None:intergenic | 40.0% | |
AACCCTTCTCAAAAGGGATA+GGG | + | chr4.2:36842276-36842295 | MS.gene23257:CDS | 40.0% | |
AATAGTGTATCGCAGAACAG+TGG | - | chr4.2:36842895-36842914 | None:intergenic | 40.0% | |
ATTGTTGGAAGAGTAGAGTC+CGG | - | chr4.2:36842538-36842557 | None:intergenic | 40.0% | |
CAATTGAGGTCTATATTGCC+GGG | + | chr4.2:36842554-36842573 | MS.gene23257:CDS | 40.0% | |
CTCATATCAACCCTCGATAA+AGG | + | chr4.2:36842087-36842106 | MS.gene23257:CDS | 40.0% | |
CTCTACTCTTCCAACAATTG+AGG | + | chr4.2:36842540-36842559 | MS.gene23257:CDS | 40.0% | |
GATTCCAACCCTTCTCAAAA+GGG | + | chr4.2:36842270-36842289 | MS.gene23257:CDS | 40.0% | |
GCTATGGCATTGTACTTTAG+TGG | + | chr4.2:36842942-36842961 | MS.gene23257:intron | 40.0% | |
GGAAATGGACCAAGTGAAAA+TGG | + | chr4.2:36842040-36842059 | MS.gene23257:CDS | 40.0% | |
GGAGTCGTTTGAATATGACA+TGG | + | chr4.2:36843049-36843068 | MS.gene23257:intron | 40.0% | |
GGATAGGGTGGATAGAAAAT+CGG | + | chr4.2:36842291-36842310 | MS.gene23257:CDS | 40.0% | |
GTTACCGTGGTTAGACATAA+GGG | + | chr4.2:36842114-36842133 | MS.gene23257:CDS | 40.0% | |
GTTCTTAAATAGTGGCGCTA+TGG | + | chr4.2:36842926-36842945 | MS.gene23257:intron | 40.0% | |
TCCAGGCACAAAGTTCTTTA+AGG | + | chr4.2:36842495-36842514 | MS.gene23257:CDS | 40.0% | |
TCCTTAAAGAACTTTGTGCC+TGG | - | chr4.2:36842499-36842518 | None:intergenic | 40.0% | |
! | AGGTCTAGCGTTGCTTTAAT+TGG | + | chr4.2:36843010-36843029 | MS.gene23257:intron | 40.0% |
AAGTGTGAGAATCTCAGGAG+TGG | - | chr4.2:36842179-36842198 | None:intergenic | 45.0% | |
ACTATAGCGCTATGCCCTTT+AGG | + | chr4.2:36842854-36842873 | MS.gene23257:intron | 45.0% | |
AGTGCCGCAATTTGACAACA+CGG | - | chr4.2:36842837-36842856 | None:intergenic | 45.0% | |
CAACCCTTCTCAAAAGGGAT+AGG | + | chr4.2:36842275-36842294 | MS.gene23257:CDS | 45.0% | |
CGTTACCGTGGTTAGACATA+AGG | + | chr4.2:36842113-36842132 | MS.gene23257:CDS | 45.0% | |
CTATAGCGCTATGCCCTTTA+GGG | + | chr4.2:36842855-36842874 | MS.gene23257:intron | 45.0% | |
GACTCCGTGTTGTCAAATTG+CGG | + | chr4.2:36842830-36842849 | MS.gene23257:intron | 45.0% | |
GACTGATGTCACAACCTAGT+AGG | + | chr4.2:36843098-36843117 | MS.gene23257:intron | 45.0% | |
GGATTCCAACCCTTCTCAAA+AGG | + | chr4.2:36842269-36842288 | MS.gene23257:CDS | 45.0% | |
GGTAACGAACCCTTTATCGA+GGG | - | chr4.2:36842100-36842119 | None:intergenic | 45.0% | |
TGTCACAACCTAGTAGGAGA+TGG | + | chr4.2:36843104-36843123 | MS.gene23257:intron | 45.0% | |
! | GAGTGGTAGTGTGAAGTTTG+AGG | + | chr4.2:36842351-36842370 | MS.gene23257:CDS | 45.0% |
! | GGAGAAGCAATTGTTGTTGC+CGG | + | chr4.2:36842516-36842535 | MS.gene23257:CDS | 45.0% |
! | TCTGGAATTGCATTCAACGC+CGG | - | chr4.2:36842652-36842671 | None:intergenic | 45.0% |
!! | CACCCTATCCCTTTTGAGAA+GGG | - | chr4.2:36842281-36842300 | None:intergenic | 45.0% |
!! | CTATCCCTTTTGAGAAGGGT+TGG | - | chr4.2:36842277-36842296 | None:intergenic | 45.0% |
CCTTCTCAAAAGGGATAGGG+TGG | + | chr4.2:36842279-36842298 | MS.gene23257:CDS | 50.0% | |
CGATAAAGGGTTCGTTACCG+TGG | + | chr4.2:36842101-36842120 | MS.gene23257:CDS | 50.0% | |
CGGTAACGAACCCTTTATCG+AGG | - | chr4.2:36842101-36842120 | None:intergenic | 50.0% | |
TATATTGCCGGGTCCTTCTC+TGG | + | chr4.2:36842565-36842584 | MS.gene23257:CDS | 50.0% | |
TGACAACACGGAGTCACACA+TGG | - | chr4.2:36842825-36842844 | None:intergenic | 50.0% | |
!! | CCACCCTATCCCTTTTGAGA+AGG | - | chr4.2:36842282-36842301 | None:intergenic | 50.0% |
ACCTGCAAAGCAAGCGCAGA+AGG | - | chr4.2:36842703-36842722 | None:intergenic | 55.0% | |
TCCTTCTGCGCTTGCTTTGC+AGG | + | chr4.2:36842699-36842718 | MS.gene23257:CDS | 55.0% | |
! | GATGATCGGAGTGCCAGAGA+AGG | - | chr4.2:36842581-36842600 | None:intergenic | 55.0% |
GCCTGCATGTGCTCTCGAGC+CGG | - | chr4.2:36843245-36843264 | None:intergenic | 65.0% | |
TGCATGTGCTCTCGAGCCGG+AGG | - | chr4.2:36843242-36843261 | None:intergenic | 65.0% | |
! | CGGAGTGCCAGAGAAGGACC+CGG | - | chr4.2:36842575-36842594 | None:intergenic | 65.0% |
! | TCCGGCTCGAGAGCACATGC+AGG | + | chr4.2:36843241-36843260 | MS.gene23257:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 36842016 | 36843488 | 36842016 | ID=MS.gene23257 |
chr4.2 | mRNA | 36842016 | 36843488 | 36842016 | ID=MS.gene23257.t1;Parent=MS.gene23257 |
chr4.2 | exon | 36842016 | 36842720 | 36842016 | ID=MS.gene23257.t1.exon1;Parent=MS.gene23257.t1 |
chr4.2 | CDS | 36842016 | 36842720 | 36842016 | ID=cds.MS.gene23257.t1;Parent=MS.gene23257.t1 |
chr4.2 | exon | 36843427 | 36843488 | 36843427 | ID=MS.gene23257.t1.exon2;Parent=MS.gene23257.t1 |
chr4.2 | CDS | 36843427 | 36843488 | 36843427 | ID=cds.MS.gene23257.t1;Parent=MS.gene23257.t1 |
Gene Sequence |
Protein sequence |