Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23394.t1 | KEH19074.1 | 95.1 | 532 | 24 | 2 | 1 | 531 | 1 | 531 | 2.70E-266 | 927.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23394.t1 | Q9SYD6 | 57.8 | 526 | 195 | 6 | 3 | 527 | 16 | 515 | 2.9e-144 | 513.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23394.t1 | A0A072TNI6 | 95.1 | 532 | 24 | 2 | 1 | 531 | 1 | 531 | 1.9e-266 | 927.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene31105 | MS.gene23394 | PPI |
| MS.gene23394 | MS.gene052066 | PPI |
| MS.gene45542 | MS.gene23394 | PPI |
| MS.gene78396 | MS.gene23394 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23394.t1 | MTR_8g037175 | 95.113 | 532 | 24 | 2 | 1 | 531 | 1 | 531 | 0.0 | 995 |
| MS.gene23394.t1 | MTR_3g029510 | 73.832 | 535 | 123 | 5 | 1 | 530 | 17 | 539 | 0.0 | 790 |
| MS.gene23394.t1 | MTR_8g036660 | 71.863 | 526 | 139 | 5 | 5 | 527 | 88 | 607 | 0.0 | 758 |
| MS.gene23394.t1 | MTR_8g037170 | 71.863 | 526 | 139 | 5 | 5 | 527 | 20 | 539 | 0.0 | 758 |
| MS.gene23394.t1 | MTR_8g037170 | 69.776 | 536 | 146 | 6 | 5 | 527 | 20 | 552 | 0.0 | 758 |
| MS.gene23394.t1 | MTR_2g097900 | 57.361 | 523 | 186 | 5 | 6 | 527 | 21 | 507 | 0.0 | 568 |
| MS.gene23394.t1 | MTR_2g097900 | 56.764 | 377 | 126 | 5 | 6 | 381 | 21 | 361 | 4.36e-130 | 385 |
| MS.gene23394.t1 | MTR_5g099020 | 41.398 | 372 | 214 | 2 | 159 | 528 | 182 | 551 | 2.15e-95 | 301 |
| MS.gene23394.t1 | MTR_5g099020 | 41.111 | 90 | 49 | 1 | 21 | 110 | 114 | 199 | 2.50e-14 | 75.9 |
| MS.gene23394.t1 | MTR_5g099020 | 41.398 | 372 | 214 | 2 | 159 | 528 | 182 | 551 | 4.12e-95 | 301 |
| MS.gene23394.t1 | MTR_5g099020 | 40.217 | 92 | 51 | 1 | 19 | 110 | 112 | 199 | 2.48e-14 | 76.3 |
| MS.gene23394.t1 | MTR_7g070210 | 44.106 | 263 | 147 | 0 | 171 | 433 | 204 | 466 | 1.24e-62 | 213 |
| MS.gene23394.t1 | MTR_7g070210 | 61.538 | 78 | 30 | 0 | 14 | 91 | 110 | 187 | 2.79e-16 | 82.0 |
| MS.gene23394.t1 | MTR_8g037130 | 100.000 | 52 | 0 | 0 | 1 | 52 | 1 | 52 | 3.25e-26 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23394.t1 | AT3G08040 | 61.027 | 526 | 179 | 6 | 5 | 528 | 19 | 520 | 0.0 | 595 |
| MS.gene23394.t1 | AT1G51340 | 57.605 | 526 | 196 | 6 | 3 | 527 | 16 | 515 | 0.0 | 550 |
| MS.gene23394.t1 | AT1G51340 | 57.605 | 526 | 196 | 6 | 3 | 527 | 16 | 515 | 0.0 | 550 |
| MS.gene23394.t1 | AT1G51340 | 57.605 | 526 | 196 | 6 | 3 | 527 | 16 | 515 | 0.0 | 550 |
| MS.gene23394.t1 | AT1G51340 | 57.752 | 516 | 191 | 6 | 13 | 527 | 20 | 509 | 0.0 | 540 |
| MS.gene23394.t1 | AT3G08040 | 60.197 | 407 | 149 | 2 | 128 | 527 | 15 | 415 | 1.50e-172 | 494 |
| MS.gene23394.t1 | AT1G51340 | 56.359 | 401 | 148 | 6 | 3 | 402 | 16 | 390 | 1.32e-130 | 386 |
| MS.gene23394.t1 | AT4G38380 | 38.867 | 512 | 250 | 6 | 19 | 528 | 33 | 483 | 1.56e-109 | 335 |
| MS.gene23394.t1 | AT4G38380 | 38.867 | 512 | 250 | 6 | 19 | 528 | 105 | 555 | 8.63e-109 | 335 |
| MS.gene23394.t1 | AT4G38380 | 38.867 | 512 | 250 | 6 | 19 | 528 | 105 | 555 | 8.63e-109 | 335 |
| MS.gene23394.t1 | AT4G38380 | 39.010 | 505 | 245 | 6 | 26 | 528 | 2 | 445 | 4.71e-108 | 330 |
| MS.gene23394.t1 | AT4G38380 | 38.281 | 512 | 243 | 5 | 19 | 528 | 105 | 545 | 3.24e-106 | 328 |
| MS.gene23394.t1 | AT2G38330 | 43.923 | 362 | 199 | 2 | 166 | 525 | 154 | 513 | 5.71e-96 | 301 |
| MS.gene23394.t1 | AT2G38330 | 54.118 | 85 | 35 | 1 | 22 | 102 | 79 | 163 | 4.92e-14 | 75.1 |
| MS.gene23394.t1 | AT2G21340 | 25.731 | 342 | 210 | 13 | 198 | 515 | 216 | 537 | 9.99e-12 | 67.8 |
Find 87 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAACTGCAATACTTATATT+TGG | 0.156175 | 8.2:-62375076 | MS.gene23394:CDS |
| GCACTTTCTCGGGAGATATT+AGG | 0.187730 | 8.2:-62377848 | MS.gene23394:CDS |
| GTATTTGATGGTGTGAATTA+TGG | 0.241654 | 8.2:-62372406 | MS.gene23394:CDS |
| ATGCATGCATCTATTTGTTT+TGG | 0.249530 | 8.2:+62375207 | None:intergenic |
| TAAGTATTGCAGTTTGAATT+AGG | 0.261020 | 8.2:+62375083 | None:intergenic |
| TGGTTTGGCTGTTGCTGTTC+AGG | 0.268976 | 8.2:-62373278 | MS.gene23394:intron |
| TCCTGCTGTTCTTCTCTCAT+TGG | 0.275446 | 8.2:-62374496 | MS.gene23394:CDS |
| CTCTCTGTGCTTGTTGGAGT+TGG | 0.276904 | 8.2:-62372643 | MS.gene23394:CDS |
| TTCAACCTTGCTTACAAATC+TGG | 0.277017 | 8.2:-62373324 | MS.gene23394:CDS |
| ATCACTTCTTGCTGATGGTT+TGG | 0.290135 | 8.2:-62373293 | MS.gene23394:CDS |
| GTTGTGCATCTAATTAAAAT+TGG | 0.290143 | 8.2:-62372580 | MS.gene23394:CDS |
| CACTTTCTCGGGAGATATTA+GGG | 0.298009 | 8.2:-62377847 | MS.gene23394:CDS |
| TTGCAGAATTCTTTCTCTAT+AGG | 0.301548 | 8.2:-62372233 | MS.gene23394:CDS |
| TTCGTATGTTTGCTGGTATA+TGG | 0.306852 | 8.2:-62372161 | MS.gene23394:CDS |
| TCAAATAAAAGATGAGTATT+GGG | 0.319263 | 8.2:+62374161 | None:intergenic |
| TTACTTCAAGACATAGAAAA+TGG | 0.322449 | 8.2:-62376564 | MS.gene23394:CDS |
| TCTTGAAGTAACTGATCCTT+AGG | 0.336949 | 8.2:+62376576 | None:intergenic |
| TACTTAAGATTGAGAGCATT+TGG | 0.338822 | 8.2:-62374522 | MS.gene23394:CDS |
| AATACTAACAAGAGGAAATA+TGG | 0.342556 | 8.2:+62376698 | None:intergenic |
| ATGATTCTTCGTATGTTTGC+TGG | 0.346609 | 8.2:-62372168 | MS.gene23394:CDS |
| GCAAACAATTCATCGGTATA+TGG | 0.348936 | 8.2:-62372209 | MS.gene23394:CDS |
| GGCCAAGCATTGTGCCAAAA+AGG | 0.350399 | 8.2:+62375104 | None:intergenic |
| TTCAAATAAAAGATGAGTAT+TGG | 0.354147 | 8.2:+62374160 | None:intergenic |
| CTTATTGATACAGCTTTCAT+AGG | 0.356167 | 8.2:-62377776 | MS.gene23394:CDS |
| TTAAGGATTTGCAGATATTC+CGG | 0.366921 | 8.2:-62373691 | MS.gene23394:CDS |
| TGCAGGATGGGAACAGCAAC+TGG | 0.371504 | 8.2:-62371963 | MS.gene23394:intron |
| CTTTGTTCAACCAAGCTTCA+AGG | 0.371536 | 8.2:-62376725 | MS.gene23394:CDS |
| TATGACCTTTGCAGCATCAT+TGG | 0.384522 | 8.2:-62373380 | MS.gene23394:CDS |
| TTCAACATTTGTGTCATTGT+TGG | 0.389395 | 8.2:+62376500 | None:intergenic |
| ACAAAGGCCAATGCATTGAT+TGG | 0.393769 | 8.2:+62372427 | None:intergenic |
| AACTCACGGATGACATATAA+AGG | 0.399714 | 8.2:+62374432 | None:intergenic |
| GCATTGGCCTTTGTATTTGA+TGG | 0.401257 | 8.2:-62372418 | MS.gene23394:CDS |
| GCAATGCAAGGAATCTTTAG+AGG | 0.402148 | 8.2:-62374474 | MS.gene23394:CDS |
| AATCTTAAGTATTTCACTGC+TGG | 0.426605 | 8.2:+62374534 | None:intergenic |
| ATGGGACTCTCTGTGCTTGT+TGG | 0.428983 | 8.2:-62372649 | MS.gene23394:CDS |
| TATTTGAAATTGGGACTCAA+TGG | 0.433342 | 8.2:-62374145 | MS.gene23394:CDS |
| CTATCCTTATAGGTACTTGA+TGG | 0.440658 | 8.2:-62373768 | MS.gene23394:intron |
| TCAAGCTAGATGCACTTTCT+CGG | 0.440700 | 8.2:-62377859 | MS.gene23394:CDS |
| GGAATATCTGCAAATCCTTA+AGG | 0.446422 | 8.2:+62373693 | None:intergenic |
| ATATGCATTGAATGTCATAT+TGG | 0.447465 | 8.2:-62374185 | MS.gene23394:CDS |
| AGCATGTTCCTTTACTGAAA+AGG | 0.447695 | 8.2:-62372731 | MS.gene23394:CDS |
| TATCCTACCTCCAAGCCTTA+AGG | 0.449228 | 8.2:-62373708 | MS.gene23394:CDS |
| ACATCATCACTTCTTGCTGA+TGG | 0.449462 | 8.2:-62373298 | MS.gene23394:CDS |
| ATCTGCAAATCCTTAAGGCT+TGG | 0.456124 | 8.2:+62373698 | None:intergenic |
| CAAGCTAGATGCACTTTCTC+GGG | 0.456268 | 8.2:-62377858 | MS.gene23394:CDS |
| GCATCATTGGCAGCAAGGTT+AGG | 0.456825 | 8.2:-62373367 | MS.gene23394:CDS |
| CATACGAAGAATCATATAGA+TGG | 0.457490 | 8.2:+62372176 | None:intergenic |
| TACAGCTTTCATAGGCCACT+TGG | 0.460167 | 8.2:-62377768 | MS.gene23394:CDS |
| TAAACTTCTATTAGCTGCCA+TGG | 0.460920 | 8.2:-62375050 | MS.gene23394:CDS |
| AAGGTTAGGTTCAGTTCCTA+TGG | 0.469099 | 8.2:-62373353 | MS.gene23394:CDS |
| GCCAATGAGAGAAGAACAGC+AGG | 0.483129 | 8.2:+62374495 | None:intergenic |
| TCTAATTAAAATTGGAATCC+CGG | 0.484838 | 8.2:-62372572 | MS.gene23394:intron |
| CTTGAAGTAACTGATCCTTA+GGG | 0.487610 | 8.2:+62376577 | None:intergenic |
| CCGGTGGAACTTGCTGCAGC+AGG | 0.492147 | 8.2:-62376759 | MS.gene23394:CDS |
| GACTACAGGTGGTTTATTGT+TGG | 0.498151 | 8.2:-62373428 | MS.gene23394:intron |
| AACAAGAGTAAAGACAAAGT+TGG | 0.504018 | 8.2:-62375166 | MS.gene23394:CDS |
| TGCAAATCCTTAAGGCTTGG+AGG | 0.504314 | 8.2:+62373701 | None:intergenic |
| ATATGGTAATCCTTGAAGCT+TGG | 0.508656 | 8.2:+62376715 | None:intergenic |
| CTTTATTTAGGTCATGGTGT+CGG | 0.522730 | 8.2:-62372268 | MS.gene23394:intron |
| TTGAAGTAACTGATCCTTAG+GGG | 0.532447 | 8.2:+62376578 | None:intergenic |
| AATGACACAAATGTTGAAGA+TGG | 0.532730 | 8.2:-62376495 | MS.gene23394:intron |
| CTTCTCTCATTGGCAATGCA+AGG | 0.540460 | 8.2:-62374486 | MS.gene23394:CDS |
| TACAACTTCCTTTGTAGCTG+AGG | 0.542038 | 8.2:-62376676 | MS.gene23394:CDS |
| CCTGCTGCAGCAAGTTCCAC+CGG | 0.543591 | 8.2:+62376759 | None:intergenic |
| TGGGAACAGCAACTGGACCT+TGG | 0.549124 | 8.2:-62371956 | MS.gene23394:CDS |
| TTGCAGCATCATTGGCAGCA+AGG | 0.551205 | 8.2:-62373372 | MS.gene23394:CDS |
| TGCTGCCAATGATGCTGCAA+AGG | 0.552578 | 8.2:+62373375 | None:intergenic |
| AACACAACCAATCAATGCAT+TGG | 0.558740 | 8.2:-62372434 | MS.gene23394:CDS |
| AGTATCTTCCTCAGCTACAA+AGG | 0.559486 | 8.2:+62376668 | None:intergenic |
| TATATTCTATGGCAATGAGT+TGG | 0.562568 | 8.2:+62371920 | None:intergenic |
| CAATGCAAGGAATCTTTAGA+GGG | 0.568460 | 8.2:-62374473 | MS.gene23394:CDS |
| GTCAACCAGATTTGTAAGCA+AGG | 0.571199 | 8.2:+62373319 | None:intergenic |
| GTTCATGTGGTTAGGACCGG+TGG | 0.575639 | 8.2:-62376775 | MS.gene23394:intron |
| ACAGCTTTCATAGGCCACTT+GGG | 0.582867 | 8.2:-62377767 | MS.gene23394:intron |
| AGCTTGGTTGAACAAAGCAA+TGG | 0.583345 | 8.2:+62376731 | None:intergenic |
| TATAGGAGCAAACAATTCAT+CGG | 0.584534 | 8.2:-62372216 | MS.gene23394:CDS |
| CAAGGTTGAAATGCAGCCAT+AGG | 0.587704 | 8.2:+62373337 | None:intergenic |
| AAACTTCTATTAGCTGCCAT+GGG | 0.597932 | 8.2:-62375049 | MS.gene23394:CDS |
| AATCCTTAAGGCTTGGAGGT+AGG | 0.608630 | 8.2:+62373705 | None:intergenic |
| ATTCACACCATCAAATACAA+AGG | 0.611394 | 8.2:+62372411 | None:intergenic |
| GCAGCAACAGCTAATGCAGA+GGG | 0.614224 | 8.2:+62377815 | None:intergenic |
| GTATGTTTGCTGGTATATGG+AGG | 0.615276 | 8.2:-62372158 | MS.gene23394:intron |
| TGAAGTAACTGATCCTTAGG+GGG | 0.619693 | 8.2:+62376579 | None:intergenic |
| GAAGTTGTAATACTAACAAG+AGG | 0.634951 | 8.2:+62376690 | None:intergenic |
| AGCAGCAACAGCTAATGCAG+AGG | 0.653098 | 8.2:+62377814 | None:intergenic |
| GTATCAATAAGAGAAGCAAG+AGG | 0.654812 | 8.2:+62377788 | None:intergenic |
| TTGGCTCTGAGATAGCTCCA+AGG | 0.690784 | 8.2:+62371939 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 62371926 | 62378833 | 62371926 | ID=MS.gene23394 |
| chr8.2 | mRNA | 62371926 | 62378833 | 62371926 | ID=MS.gene23394.t1;Parent=MS.gene23394 |
| chr8.2 | exon | 62378802 | 62378833 | 62378802 | ID=MS.gene23394.t1.exon1;Parent=MS.gene23394.t1 |
| chr8.2 | CDS | 62378802 | 62378833 | 62378802 | ID=cds.MS.gene23394.t1;Parent=MS.gene23394.t1 |
| chr8.2 | exon | 62377768 | 62377889 | 62377768 | ID=MS.gene23394.t1.exon2;Parent=MS.gene23394.t1 |
| chr8.2 | CDS | 62377768 | 62377889 | 62377768 | ID=cds.MS.gene23394.t1;Parent=MS.gene23394.t1 |
| chr8.2 | exon | 62376496 | 62376783 | 62376496 | ID=MS.gene23394.t1.exon3;Parent=MS.gene23394.t1 |
| chr8.2 | CDS | 62376496 | 62376783 | 62376496 | ID=cds.MS.gene23394.t1;Parent=MS.gene23394.t1 |
| chr8.2 | exon | 62375039 | 62375232 | 62375039 | ID=MS.gene23394.t1.exon4;Parent=MS.gene23394.t1 |
| chr8.2 | CDS | 62375039 | 62375232 | 62375039 | ID=cds.MS.gene23394.t1;Parent=MS.gene23394.t1 |
| chr8.2 | exon | 62374439 | 62374574 | 62374439 | ID=MS.gene23394.t1.exon5;Parent=MS.gene23394.t1 |
| chr8.2 | CDS | 62374439 | 62374574 | 62374439 | ID=cds.MS.gene23394.t1;Parent=MS.gene23394.t1 |
| chr8.2 | exon | 62374118 | 62374214 | 62374118 | ID=MS.gene23394.t1.exon6;Parent=MS.gene23394.t1 |
| chr8.2 | CDS | 62374118 | 62374214 | 62374118 | ID=cds.MS.gene23394.t1;Parent=MS.gene23394.t1 |
| chr8.2 | exon | 62373678 | 62373778 | 62373678 | ID=MS.gene23394.t1.exon7;Parent=MS.gene23394.t1 |
| chr8.2 | CDS | 62373678 | 62373778 | 62373678 | ID=cds.MS.gene23394.t1;Parent=MS.gene23394.t1 |
| chr8.2 | exon | 62373279 | 62373442 | 62373279 | ID=MS.gene23394.t1.exon8;Parent=MS.gene23394.t1 |
| chr8.2 | CDS | 62373279 | 62373442 | 62373279 | ID=cds.MS.gene23394.t1;Parent=MS.gene23394.t1 |
| chr8.2 | exon | 62372573 | 62372761 | 62372573 | ID=MS.gene23394.t1.exon9;Parent=MS.gene23394.t1 |
| chr8.2 | CDS | 62372573 | 62372761 | 62372573 | ID=cds.MS.gene23394.t1;Parent=MS.gene23394.t1 |
| chr8.2 | exon | 62372372 | 62372467 | 62372372 | ID=MS.gene23394.t1.exon10;Parent=MS.gene23394.t1 |
| chr8.2 | CDS | 62372372 | 62372467 | 62372372 | ID=cds.MS.gene23394.t1;Parent=MS.gene23394.t1 |
| chr8.2 | exon | 62372159 | 62372280 | 62372159 | ID=MS.gene23394.t1.exon11;Parent=MS.gene23394.t1 |
| chr8.2 | CDS | 62372159 | 62372280 | 62372159 | ID=cds.MS.gene23394.t1;Parent=MS.gene23394.t1 |
| chr8.2 | exon | 62371926 | 62371980 | 62371926 | ID=MS.gene23394.t1.exon12;Parent=MS.gene23394.t1 |
| chr8.2 | CDS | 62371926 | 62371980 | 62371926 | ID=cds.MS.gene23394.t1;Parent=MS.gene23394.t1 |
| Gene Sequence |
| Protein sequence |