Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78396.t1 | AFL69846.1 | 99 | 507 | 5 | 0 | 1 | 507 | 1 | 507 | 9.10E-272 | 945.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78396.t1 | Q9SYD6 | 70.4 | 506 | 140 | 4 | 12 | 507 | 10 | 515 | 8.5e-186 | 651.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78396.t1 | I3Y0W7 | 99.0 | 507 | 5 | 0 | 1 | 507 | 1 | 507 | 6.5e-272 | 945.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049222 | MS.gene78396 | 0.816435 | 5.54E-52 | -1.69E-46 |
| MS.gene049232 | MS.gene78396 | 0.88496 | 1.23E-71 | -1.69E-46 |
| MS.gene049396 | MS.gene78396 | 0.809321 | 2.00E-50 | -1.69E-46 |
| MS.gene049633 | MS.gene78396 | 0.832444 | 9.42E-56 | -1.69E-46 |
| MS.gene049656 | MS.gene78396 | 0.866124 | 3.58E-65 | -1.69E-46 |
| MS.gene049657 | MS.gene78396 | 0.857147 | 1.99E-62 | -1.69E-46 |
| MS.gene049865 | MS.gene78396 | 0.812093 | 5.04E-51 | -1.69E-46 |
| MS.gene05010 | MS.gene78396 | 0.816216 | 6.20E-52 | -1.69E-46 |
| MS.gene050170 | MS.gene78396 | 0.872135 | 4.01E-67 | -1.69E-46 |
| MS.gene050216 | MS.gene78396 | 0.837759 | 4.30E-57 | -1.69E-46 |
| MS.gene050323 | MS.gene78396 | 0.863007 | 3.38E-64 | -1.69E-46 |
| MS.gene050496 | MS.gene78396 | 0.846932 | 1.59E-59 | -1.69E-46 |
| MS.gene050502 | MS.gene78396 | 0.830264 | 3.24E-55 | -1.69E-46 |
| MS.gene050504 | MS.gene78396 | 0.826696 | 2.35E-54 | -1.69E-46 |
| MS.gene050518 | MS.gene78396 | 0.803292 | 3.74E-49 | -1.69E-46 |
| MS.gene050577 | MS.gene78396 | 0.805506 | 1.29E-49 | -1.69E-46 |
| MS.gene050612 | MS.gene78396 | 0.808472 | 3.05E-50 | -1.69E-46 |
| MS.gene050675 | MS.gene78396 | 0.826733 | 2.31E-54 | -1.69E-46 |
| MS.gene050697 | MS.gene78396 | 0.842597 | 2.35E-58 | -1.69E-46 |
| MS.gene05080 | MS.gene78396 | 0.825453 | 4.65E-54 | -1.69E-46 |
| MS.gene050868 | MS.gene78396 | 0.882664 | 8.62E-71 | -1.69E-46 |
| MS.gene050871 | MS.gene78396 | 0.882962 | 6.70E-71 | -1.69E-46 |
| MS.gene050904 | MS.gene78396 | 0.839656 | 1.39E-57 | -1.69E-46 |
| MS.gene050986 | MS.gene78396 | 0.813663 | 2.28E-51 | -1.69E-46 |
| MS.gene051268 | MS.gene78396 | 0.82564 | 4.20E-54 | -1.69E-46 |
| MS.gene051317 | MS.gene78396 | 0.802554 | 5.31E-49 | -1.69E-46 |
| MS.gene051509 | MS.gene78396 | 0.85395 | 1.70E-61 | -1.69E-46 |
| MS.gene051874 | MS.gene78396 | 0.809449 | 1.88E-50 | -1.69E-46 |
| MS.gene052066 | MS.gene78396 | 0.941403 | 4.42E-101 | -1.69E-46 |
| MS.gene052164 | MS.gene78396 | 0.826529 | 2.58E-54 | -1.69E-46 |
| MS.gene052482 | MS.gene78396 | 0.830082 | 3.59E-55 | -1.69E-46 |
| MS.gene052486 | MS.gene78396 | 0.837384 | 5.37E-57 | -1.69E-46 |
| MS.gene052506 | MS.gene78396 | 0.803243 | 3.83E-49 | -1.69E-46 |
| MS.gene052966 | MS.gene78396 | 0.852067 | 5.89E-61 | -1.69E-46 |
| MS.gene053203 | MS.gene78396 | 0.833803 | 4.32E-56 | -1.69E-46 |
| MS.gene053505 | MS.gene78396 | 0.804334 | 2.27E-49 | -1.69E-46 |
| MS.gene053574 | MS.gene78396 | 0.827514 | 1.50E-54 | -1.69E-46 |
| MS.gene053626 | MS.gene78396 | 0.845096 | 5.03E-59 | -1.69E-46 |
| MS.gene053633 | MS.gene78396 | 0.87181 | 5.15E-67 | -1.69E-46 |
| MS.gene053824 | MS.gene78396 | 0.812496 | 4.12E-51 | -1.69E-46 |
| MS.gene054003 | MS.gene78396 | 0.832913 | 7.21E-56 | -1.69E-46 |
| MS.gene054595 | MS.gene78396 | 0.828229 | 1.01E-54 | -1.69E-46 |
| MS.gene05470 | MS.gene78396 | 0.812342 | 4.45E-51 | -1.69E-46 |
| MS.gene054954 | MS.gene78396 | 0.808544 | 2.94E-50 | -1.69E-46 |
| MS.gene055502 | MS.gene78396 | 0.808239 | 3.42E-50 | -1.69E-46 |
| MS.gene055577 | MS.gene78396 | 0.815922 | 7.21E-52 | -1.69E-46 |
| MS.gene055750 | MS.gene78396 | 0.823762 | 1.16E-53 | -1.69E-46 |
| MS.gene055751 | MS.gene78396 | 0.804301 | 2.31E-49 | -1.69E-46 |
| MS.gene055776 | MS.gene78396 | 0.804623 | 1.98E-49 | -1.69E-46 |
| MS.gene05589 | MS.gene78396 | 0.852913 | 3.38E-61 | -1.69E-46 |
| MS.gene056046 | MS.gene78396 | 0.80738 | 5.20E-50 | -1.69E-46 |
| MS.gene056166 | MS.gene78396 | 0.829185 | 5.93E-55 | -1.69E-46 |
| MS.gene056387 | MS.gene78396 | 0.846685 | 1.86E-59 | -1.69E-46 |
| MS.gene056504 | MS.gene78396 | 0.870176 | 1.78E-66 | -1.69E-46 |
| MS.gene056510 | MS.gene78396 | 0.860733 | 1.68E-63 | -1.69E-46 |
| MS.gene056878 | MS.gene78396 | 0.859276 | 4.63E-63 | -1.69E-46 |
| MS.gene057086 | MS.gene78396 | 0.830035 | 3.68E-55 | -1.69E-46 |
| MS.gene057687 | MS.gene78396 | 0.850534 | 1.60E-60 | -1.69E-46 |
| MS.gene057734 | MS.gene78396 | 0.819671 | 1.03E-52 | -1.69E-46 |
| MS.gene057857 | MS.gene78396 | 0.801975 | 6.99E-49 | -1.69E-46 |
| MS.gene057872 | MS.gene78396 | 0.858779 | 6.52E-63 | -1.69E-46 |
| MS.gene057876 | MS.gene78396 | 0.807546 | 4.79E-50 | -1.69E-46 |
| MS.gene05787 | MS.gene78396 | 0.840758 | 7.17E-58 | -1.69E-46 |
| MS.gene058041 | MS.gene78396 | 0.812786 | 3.56E-51 | -1.69E-46 |
| MS.gene058157 | MS.gene78396 | 0.837521 | 4.95E-57 | -1.69E-46 |
| MS.gene058171 | MS.gene78396 | -0.839673 | 1.38E-57 | -1.69E-46 |
| MS.gene058173 | MS.gene78396 | -0.84429 | 8.28E-59 | -1.69E-46 |
| MS.gene058175 | MS.gene78396 | -0.842319 | 2.78E-58 | -1.69E-46 |
| MS.gene05837 | MS.gene78396 | 0.821299 | 4.35E-53 | -1.69E-46 |
| MS.gene059045 | MS.gene78396 | -0.82309 | 1.67E-53 | -1.69E-46 |
| MS.gene059367 | MS.gene78396 | 0.836887 | 7.19E-57 | -1.69E-46 |
| MS.gene059517 | MS.gene78396 | 0.813109 | 3.02E-51 | -1.69E-46 |
| MS.gene059667 | MS.gene78396 | 0.804081 | 2.56E-49 | -1.69E-46 |
| MS.gene059703 | MS.gene78396 | -0.803168 | 3.96E-49 | -1.69E-46 |
| MS.gene059837 | MS.gene78396 | 0.816866 | 4.43E-52 | -1.69E-46 |
| MS.gene059865 | MS.gene78396 | 0.871 | 9.54E-67 | -1.69E-46 |
| MS.gene05995 | MS.gene78396 | 0.83617 | 1.09E-56 | -1.69E-46 |
| MS.gene05996 | MS.gene78396 | 0.850973 | 1.20E-60 | -1.69E-46 |
| MS.gene06000 | MS.gene78396 | 0.847252 | 1.30E-59 | -1.69E-46 |
| MS.gene060187 | MS.gene78396 | -0.831319 | 1.79E-55 | -1.69E-46 |
| MS.gene060295 | MS.gene78396 | 0.83084 | 2.34E-55 | -1.69E-46 |
| MS.gene060339 | MS.gene78396 | 0.826196 | 3.10E-54 | -1.69E-46 |
| MS.gene060482 | MS.gene78396 | 0.808076 | 3.70E-50 | -1.69E-46 |
| MS.gene060593 | MS.gene78396 | -0.822536 | 2.25E-53 | -1.69E-46 |
| MS.gene060595 | MS.gene78396 | -0.861895 | 7.44E-64 | -1.69E-46 |
| MS.gene060762 | MS.gene78396 | 0.830826 | 2.36E-55 | -1.69E-46 |
| MS.gene060778 | MS.gene78396 | 0.889171 | 3.08E-73 | -1.69E-46 |
| MS.gene06077 | MS.gene78396 | 0.822957 | 1.79E-53 | -1.69E-46 |
| MS.gene06097 | MS.gene78396 | 0.843197 | 1.63E-58 | -1.69E-46 |
| MS.gene060982 | MS.gene78396 | 0.864577 | 1.10E-64 | -1.69E-46 |
| MS.gene061218 | MS.gene78396 | 0.809401 | 1.93E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene78396 | MS.gene98678 | PPI |
| MS.gene78396 | MS.gene024346 | PPI |
| MS.gene78396 | MS.gene60481 | PPI |
| MS.gene78396 | MS.gene23590 | PPI |
| MS.gene78396 | MS.gene86725 | PPI |
| MS.gene78396 | MS.gene23394 | PPI |
| MS.gene78396 | MS.gene23395 | PPI |
| MS.gene78396 | MS.gene23591 | PPI |
| MS.gene78396 | MS.gene42884 | PPI |
| MS.gene78396 | MS.gene016686 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78396.t1 | MTR_2g097900 | 98.028 | 507 | 10 | 0 | 1 | 507 | 1 | 507 | 0.0 | 995 |
| MS.gene78396.t1 | MTR_2g097900 | 96.953 | 361 | 11 | 0 | 1 | 361 | 1 | 361 | 0.0 | 702 |
| MS.gene78396.t1 | MTR_3g029510 | 59.579 | 522 | 177 | 3 | 16 | 506 | 17 | 535 | 0.0 | 606 |
| MS.gene78396.t1 | MTR_8g037175 | 57.088 | 522 | 189 | 4 | 21 | 507 | 6 | 527 | 0.0 | 571 |
| MS.gene78396.t1 | MTR_8g036660 | 57.250 | 531 | 186 | 5 | 12 | 506 | 81 | 606 | 0.0 | 569 |
| MS.gene78396.t1 | MTR_8g037170 | 57.250 | 531 | 186 | 5 | 12 | 506 | 13 | 538 | 0.0 | 569 |
| MS.gene78396.t1 | MTR_8g037170 | 55.515 | 544 | 188 | 5 | 12 | 506 | 13 | 551 | 0.0 | 565 |
| MS.gene78396.t1 | MTR_5g099020 | 43.067 | 476 | 236 | 3 | 31 | 506 | 109 | 549 | 1.44e-126 | 380 |
| MS.gene78396.t1 | MTR_5g099020 | 43.067 | 476 | 236 | 3 | 31 | 506 | 109 | 549 | 4.37e-126 | 380 |
| MS.gene78396.t1 | MTR_7g070210 | 44.845 | 388 | 180 | 2 | 29 | 413 | 110 | 466 | 8.19e-91 | 286 |
| MS.gene78396.t1 | MTR_4g071390 | 25.738 | 474 | 283 | 14 | 36 | 495 | 95 | 513 | 6.21e-20 | 93.2 |
| MS.gene78396.t1 | MTR_4g071370 | 25.417 | 480 | 288 | 15 | 36 | 500 | 108 | 532 | 4.25e-19 | 90.9 |
| MS.gene78396.t1 | MTR_4g071445 | 24.211 | 475 | 300 | 11 | 36 | 500 | 106 | 530 | 1.77e-18 | 89.0 |
| MS.gene78396.t1 | MTR_8g037130 | 77.083 | 48 | 11 | 0 | 20 | 67 | 5 | 52 | 2.32e-17 | 76.6 |
| MS.gene78396.t1 | MTR_4g071465 | 24.632 | 475 | 298 | 13 | 36 | 500 | 101 | 525 | 2.05e-16 | 82.4 |
| MS.gene78396.t1 | MTR_4g071370 | 25.485 | 412 | 241 | 14 | 36 | 432 | 108 | 468 | 2.57e-14 | 75.5 |
| MS.gene78396.t1 | MTR_4g071420 | 24.528 | 477 | 296 | 15 | 36 | 500 | 109 | 533 | 4.97e-14 | 75.1 |
| MS.gene78396.t1 | MTR_4g071370 | 25.128 | 390 | 230 | 12 | 36 | 414 | 108 | 446 | 3.33e-13 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78396.t1 | AT1G51340 | 70.356 | 506 | 140 | 4 | 12 | 507 | 10 | 515 | 0.0 | 669 |
| MS.gene78396.t1 | AT1G51340 | 70.356 | 506 | 140 | 4 | 12 | 507 | 10 | 515 | 0.0 | 669 |
| MS.gene78396.t1 | AT1G51340 | 70.356 | 506 | 140 | 4 | 12 | 507 | 10 | 515 | 0.0 | 669 |
| MS.gene78396.t1 | AT1G51340 | 71.224 | 490 | 131 | 4 | 28 | 507 | 20 | 509 | 0.0 | 659 |
| MS.gene78396.t1 | AT3G08040 | 59.881 | 506 | 186 | 3 | 16 | 506 | 15 | 518 | 0.0 | 560 |
| MS.gene78396.t1 | AT1G51340 | 69.291 | 381 | 107 | 4 | 12 | 382 | 10 | 390 | 3.98e-168 | 481 |
| MS.gene78396.t1 | AT3G08040 | 59.158 | 404 | 154 | 2 | 103 | 506 | 22 | 414 | 1.06e-163 | 470 |
| MS.gene78396.t1 | AT4G38380 | 44.421 | 475 | 240 | 3 | 33 | 507 | 32 | 482 | 1.77e-127 | 380 |
| MS.gene78396.t1 | AT4G38380 | 44.421 | 475 | 240 | 3 | 33 | 507 | 104 | 554 | 3.10e-126 | 380 |
| MS.gene78396.t1 | AT4G38380 | 44.421 | 475 | 240 | 3 | 33 | 507 | 104 | 554 | 3.10e-126 | 380 |
| MS.gene78396.t1 | AT4G38380 | 44.540 | 467 | 235 | 3 | 41 | 507 | 2 | 444 | 4.48e-125 | 373 |
| MS.gene78396.t1 | AT4G38380 | 44.000 | 475 | 232 | 3 | 33 | 507 | 104 | 544 | 1.07e-124 | 375 |
| MS.gene78396.t1 | AT2G38330 | 44.654 | 477 | 230 | 2 | 31 | 507 | 73 | 515 | 2.77e-123 | 371 |
| MS.gene78396.t1 | AT2G21340 | 25.652 | 460 | 273 | 16 | 36 | 480 | 117 | 522 | 8.27e-17 | 83.6 |
| MS.gene78396.t1 | AT2G21340 | 25.217 | 460 | 272 | 16 | 36 | 480 | 117 | 519 | 1.10e-15 | 80.1 |
| MS.gene78396.t1 | AT4G39030 | 24.788 | 472 | 289 | 16 | 36 | 494 | 100 | 518 | 1.27e-15 | 80.1 |
Find 121 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGTGGATTCATTGGAATT+TGG | 0.174098 | 2.3:+5332495 | MS.gene78396:CDS |
| GCTTCGTCAGCGCTATATTT+TGG | 0.205113 | 2.3:+5330296 | MS.gene78396:CDS |
| ACGGCCTTCATTGGCCAATT+AGG | 0.238684 | 2.3:+5329541 | MS.gene78396:CDS |
| ATGCAGATGGGCATGGTTCT+TGG | 0.278565 | 2.3:+5331770 | MS.gene78396:intron |
| TTCAAGTCTGTCTGCAAGTT+TGG | 0.279500 | 2.3:+5331425 | MS.gene78396:CDS |
| GCGGATGGTCTGGCTGTTGC+CGG | 0.285261 | 2.3:+5331466 | MS.gene78396:CDS |
| TATTTGATGGTGTCAACTTT+GGG | 0.292922 | 2.3:+5332031 | MS.gene78396:CDS |
| TGGTTTCAGGCGATTCTTGC+AGG | 0.293939 | 2.3:+5331569 | MS.gene78396:intron |
| TTGGCACTTGCATTCATTCT+TGG | 0.305585 | 2.3:+5331794 | MS.gene78396:CDS |
| AACATGATAACATACCTAAT+TGG | 0.313690 | 2.3:-5329555 | None:intergenic |
| AATTTCAAGTACTGCATTGC+AGG | 0.318886 | 2.3:-5330562 | None:intergenic |
| TGGTGGATTCATTGGAATTT+GGG | 0.325300 | 2.3:+5332496 | MS.gene78396:CDS |
| TGTTTGGCCTTTGTATTTGA+TGG | 0.334770 | 2.3:+5332018 | MS.gene78396:CDS |
| AAAACCTTTATTGAACTTCA+TGG | 0.337472 | 2.3:+5330364 | MS.gene78396:CDS |
| ATACAAAGGCCAAACAGTTC+AGG | 0.350521 | 2.3:-5332011 | None:intergenic |
| AACTCTTTGGTTTCAGCATC+CGG | 0.351723 | 2.3:-5330089 | None:intergenic |
| ACCTATTTGCACTTTCTTCA+AGG | 0.352355 | 2.3:+5329177 | MS.gene78396:CDS |
| TGAAAGCTTTAATGTAGTTA+AGG | 0.364155 | 2.3:+5330241 | MS.gene78396:CDS |
| AACTGCTACCCGAGTATTGC+AGG | 0.367216 | 2.3:+5331628 | MS.gene78396:CDS |
| TCATCTGCTGGTGGATTCAT+TGG | 0.373915 | 2.3:+5332488 | MS.gene78396:CDS |
| GCCCGCTGCAATGGCTTTGA+CGG | 0.379476 | 2.3:+5329492 | MS.gene78396:CDS |
| CTTGCATTCATTCTTGGAAC+AGG | 0.384448 | 2.3:+5331800 | MS.gene78396:CDS |
| TTATGATGCAGGATTGGAAC+TGG | 0.389829 | 2.3:+5332677 | MS.gene78396:intron |
| TTTAATGTAGTTAAGGTTGA+TGG | 0.390926 | 2.3:+5330248 | MS.gene78396:CDS |
| ACTCCCATGAAGTTCAATAA+AGG | 0.391036 | 2.3:-5330368 | None:intergenic |
| GTATTTAAATTAGACGATCT+TGG | 0.391627 | 2.3:+5329445 | MS.gene78396:CDS |
| TACATACCAGTGGCATATAA+AGG | 0.392262 | 2.3:-5330664 | None:intergenic |
| CAGAAATAAGCAACGTTGCC+TGG | 0.395145 | 2.3:-5330337 | None:intergenic |
| GTCCCTTCTTGCGGATGGTC+TGG | 0.395512 | 2.3:+5331456 | MS.gene78396:CDS |
| TCTTCTTTCATTAGCGATGC+AGG | 0.402072 | 2.3:+5330609 | MS.gene78396:CDS |
| TGGTCTGGCTGTTGCCGGGC+AGG | 0.402764 | 2.3:+5331471 | MS.gene78396:CDS |
| CTGTGAGCTTGCGTCGCTTA+AGG | 0.406638 | 2.3:-5330030 | None:intergenic |
| TCCTACACCTCATTAGAGTT+GGG | 0.408785 | 2.3:+5331864 | MS.gene78396:CDS |
| TCTTCATTCTCAGGTTATAG+TGG | 0.409610 | 2.3:+5332433 | MS.gene78396:intron |
| GTATTTGATGGTGTCAACTT+TGG | 0.411044 | 2.3:+5332030 | MS.gene78396:CDS |
| CACTCAACCCCTGAACTGTT+TGG | 0.424826 | 2.3:+5332002 | MS.gene78396:CDS |
| ATGAGTTTAAGAGCCTTTGC+TGG | 0.427946 | 2.3:+5332536 | MS.gene78396:CDS |
| TTGGTCGATACGGCCTTCAT+TGG | 0.428017 | 2.3:+5329532 | MS.gene78396:CDS |
| TTTCTGCGGTAAGAACTCTT+TGG | 0.430202 | 2.3:-5330102 | None:intergenic |
| AATTGCTTTGCCCGCTGCAA+TGG | 0.438261 | 2.3:+5329483 | MS.gene78396:CDS |
| CGACGCAAGCTCACAGGTAG+AGG | 0.442007 | 2.3:+5330037 | MS.gene78396:CDS |
| GCCGTCAAAGCCATTGCAGC+GGG | 0.444777 | 2.3:-5329493 | None:intergenic |
| CTTGGAACAGGATTGCACTT+TGG | 0.450496 | 2.3:+5331812 | MS.gene78396:CDS |
| TACTTGAAATTGAGATCTCT+TGG | 0.450593 | 2.3:+5330574 | MS.gene78396:CDS |
| TGCAGGATTGGAACTGGGTC+AGG | 0.452693 | 2.3:+5332683 | MS.gene78396:intron |
| GGCTGATCCTATAGCATCAT+TGG | 0.454668 | 2.3:+5329513 | MS.gene78396:CDS |
| CAGGACCATGGGAATTCCTT+AGG | 0.460543 | 2.3:+5332702 | MS.gene78396:CDS |
| CTTGGAAGCTGCGACACCTC+CGG | 0.465998 | 2.3:+5330070 | MS.gene78396:CDS |
| TCCTTGAAGAAAGTGCAAAT+AGG | 0.466690 | 2.3:-5329178 | None:intergenic |
| AATTGCAGATGTTTGATGCT+TGG | 0.468820 | 2.3:-5331062 | None:intergenic |
| TGCAGGTGCATTTGCTAACA+AGG | 0.477862 | 2.3:+5331586 | MS.gene78396:CDS |
| TACAAAGGCCAAACAGTTCA+GGG | 0.478905 | 2.3:-5332010 | None:intergenic |
| CGGATGGTCTGGCTGTTGCC+GGG | 0.479805 | 2.3:+5331467 | MS.gene78396:CDS |
| AAACCTTTATTGAACTTCAT+GGG | 0.481789 | 2.3:+5330365 | MS.gene78396:CDS |
| GATGGGCATGGTTCTTGGAT+TGG | 0.483353 | 2.3:+5331775 | MS.gene78396:intron |
| GCACTTTCTTCAAGGATGCT+AGG | 0.484597 | 2.3:+5329185 | MS.gene78396:CDS |
| TGGAACTGGGTCAGGACCAT+GGG | 0.486703 | 2.3:+5332691 | MS.gene78396:CDS |
| CCTACTGCAGCAAGCTCCAC+TGG | 0.487433 | 2.3:-5329918 | None:intergenic |
| GTATCGACCAATGATGCTAT+AGG | 0.489373 | 2.3:-5329520 | None:intergenic |
| GTCCTACACCTCATTAGAGT+TGG | 0.498396 | 2.3:+5331863 | MS.gene78396:CDS |
| TGCTAACAAGGACTATGAAA+AGG | 0.500938 | 2.3:+5331598 | MS.gene78396:CDS |
| GCAGTGTCCCTTCTTGCGGA+TGG | 0.503081 | 2.3:+5331451 | MS.gene78396:CDS |
| CTTGTTTGTTCAAACTCCAC+AGG | 0.509281 | 2.3:-5331025 | None:intergenic |
| GCTAGCGCACTTAGCTCCTA+AGG | 0.510397 | 2.3:-5332718 | None:intergenic |
| CATACCTAATTGGCCAATGA+AGG | 0.513148 | 2.3:-5329545 | None:intergenic |
| AGTCTGTCTGCAAGTTTGGT+TGG | 0.514353 | 2.3:+5331429 | MS.gene78396:CDS |
| CCTCATTAGAGTTGGGGTCC+CGG | 0.519902 | 2.3:+5331871 | MS.gene78396:CDS |
| CCAGTGGAGCTTGCTGCAGT+AGG | 0.523504 | 2.3:+5329918 | MS.gene78396:CDS |
| AGCTCACAGGTAGAGGAGAA+TGG | 0.528973 | 2.3:+5330044 | MS.gene78396:CDS |
| TGTAGAACACCTGCAATACT+CGG | 0.533112 | 2.3:-5331637 | None:intergenic |
| CTTAAGCGACGCAAGCTCAC+AGG | 0.533775 | 2.3:+5330031 | MS.gene78396:CDS |
| CTTCTTTCATTAGCGATGCA+GGG | 0.537717 | 2.3:+5330610 | MS.gene78396:CDS |
| TGCAGATGTTTGATGCTTGG+AGG | 0.538167 | 2.3:-5331059 | None:intergenic |
| TTGGAACTGGGTCAGGACCA+TGG | 0.539529 | 2.3:+5332690 | MS.gene78396:CDS |
| CAGCCAGACCATCCGCAAGA+AGG | 0.542007 | 2.3:-5331459 | None:intergenic |
| GGTAGAGGAGAATGGATGCT+TGG | 0.544369 | 2.3:+5330052 | MS.gene78396:CDS |
| TATAGCATCATTGGTCGATA+CGG | 0.544448 | 2.3:+5329522 | MS.gene78396:CDS |
| GAGCCTTTGCTGGCTTCTTG+AGG | 0.546982 | 2.3:+5332546 | MS.gene78396:CDS |
| AAAACTCCTTTATATGCCAC+TGG | 0.548051 | 2.3:+5330658 | MS.gene78396:CDS |
| ACGTTGCCTGGACGAGGCCA+AGG | 0.550365 | 2.3:-5330325 | None:intergenic |
| AGGTATCCTTGGCCTCGTCC+AGG | 0.551223 | 2.3:+5330319 | MS.gene78396:CDS |
| GTATTCCGCATGGGTGTCAA+CGG | 0.551236 | 2.3:+5330804 | MS.gene78396:CDS |
| CTCTATTCAATCAAGCATCA+AGG | 0.567403 | 2.3:+5329952 | MS.gene78396:CDS |
| TGCTTGATTGAATAGAGCTA+TGG | 0.567545 | 2.3:-5329946 | None:intergenic |
| GGTAACATTCTGCGTGACAC+TGG | 0.567656 | 2.3:+5331357 | MS.gene78396:CDS |
| GTTGGCAGTGTCCCTTCTTG+CGG | 0.568099 | 2.3:+5331447 | MS.gene78396:CDS |
| GAGATCTCTTGGTGCTCCTG+CGG | 0.568151 | 2.3:+5330585 | MS.gene78396:CDS |
| TGCATATTCAGCCTTCTCCA+TGG | 0.574962 | 2.3:+5332065 | MS.gene78396:CDS |
| TAATATAATGCAGATGGGCA+TGG | 0.575585 | 2.3:+5331763 | MS.gene78396:intron |
| AGCCAGACCATCCGCAAGAA+GGG | 0.579779 | 2.3:-5331458 | None:intergenic |
| TAAGCAACGTTGCCTGGACG+AGG | 0.584099 | 2.3:-5330331 | None:intergenic |
| CATATCATATCTCACCTGCC+CGG | 0.595074 | 2.3:-5331485 | None:intergenic |
| GAAGTTACATACCATGGAGA+AGG | 0.599442 | 2.3:-5332076 | None:intergenic |
| ACAGACTTGAAATGCAGCCA+TGG | 0.602463 | 2.3:-5331413 | None:intergenic |
| ATTTGATGGTGTCAACTTTG+GGG | 0.602557 | 2.3:+5332032 | MS.gene78396:CDS |
| CCGGGACCCCAACTCTAATG+AGG | 0.604305 | 2.3:-5331871 | None:intergenic |
| TACTTTCAGCTATACTCCTG+TGG | 0.608095 | 2.3:+5331009 | MS.gene78396:CDS |
| TACTCGGGTAGCAGTTGTTG+AGG | 0.609106 | 2.3:-5331621 | None:intergenic |
| TGCATTGCAGGATGTAGCAT+AGG | 0.609472 | 2.3:-5330550 | None:intergenic |
| GAAGTTGTGACACTGACTAG+TGG | 0.610876 | 2.3:-5329987 | None:intergenic |
| GCTAATGAAAGAAGAACCGC+AGG | 0.618157 | 2.3:-5330601 | None:intergenic |
| ATTGGTCTCTACAGGTCCAG+TGG | 0.619428 | 2.3:+5329902 | MS.gene78396:intron |
| GTAGAACACCTGCAATACTC+GGG | 0.620615 | 2.3:-5331636 | None:intergenic |
| AAGTTGTGACACTGACTAGT+GGG | 0.626798 | 2.3:-5329986 | None:intergenic |
| CCCCAACTCTAATGAGGTGT+AGG | 0.629440 | 2.3:-5331865 | None:intergenic |
| AGCCGTCAAAGCCATTGCAG+CGG | 0.630911 | 2.3:-5329494 | None:intergenic |
| ATTATTCATGAGAGTCATTG+CGG | 0.631200 | 2.3:+5331336 | MS.gene78396:CDS |
| TATGATGCAGGATTGGAACT+GGG | 0.631342 | 2.3:+5332678 | MS.gene78396:intron |
| AGGTTGATGGAAGTAAGAGA+AGG | 0.632842 | 2.3:+5330261 | MS.gene78396:CDS |
| ACACCACGGATCAACATCCA+TGG | 0.637699 | 2.3:+5331396 | MS.gene78396:CDS |
| TTACCTCAAGAAGCCAGCAA+AGG | 0.639714 | 2.3:-5332549 | None:intergenic |
| CTGAGATATAACATGTGCAA+TGG | 0.641731 | 2.3:-5330832 | None:intergenic |
| CCTACACCTCATTAGAGTTG+GGG | 0.644035 | 2.3:+5331865 | MS.gene78396:CDS |
| GTTGACACCATCAAATACAA+AGG | 0.646571 | 2.3:-5332025 | None:intergenic |
| TATAGCGCTGACGAAGCTGA+AGG | 0.652574 | 2.3:-5330290 | None:intergenic |
| TCTTTGGTTTCAGCATCCGG+AGG | 0.669170 | 2.3:-5330086 | None:intergenic |
| TAGCTCCTAAGGAATTCCCA+TGG | 0.675106 | 2.3:-5332707 | None:intergenic |
| ACAAAGGCCAAACAGTTCAG+GGG | 0.700393 | 2.3:-5332009 | None:intergenic |
| GCATCATTAGCTGCACACCA+CGG | 0.714665 | 2.3:+5331382 | MS.gene78396:CDS |
| CAGCCATGGATGTTGATCCG+TGG | 0.715332 | 2.3:-5331399 | None:intergenic |
| CTGCACCGTTGACACCCATG+CGG | 0.715966 | 2.3:-5330809 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATGAACTAAAAATATG+AGG | - | chr2.3:5329339-5329358 | None:intergenic | 15.0% |
| !! | AAAATATGAATAGAACTATA+GGG | + | chr2.3:5329766-5329785 | MS.gene78396:intron | 15.0% |
| !! | AATTATAATATAATGCAGAT+GGG | + | chr2.3:5331758-5331777 | MS.gene78396:intron | 15.0% |
| !! | GTATAAACTTTAAATAACAT+TGG | - | chr2.3:5331204-5331223 | None:intergenic | 15.0% |
| !! | TAATTATAATATAATGCAGA+TGG | + | chr2.3:5331757-5331776 | MS.gene78396:intron | 15.0% |
| !! | TATAGTTTAATACAGATTTA+AGG | + | chr2.3:5330889-5330908 | MS.gene78396:intron | 15.0% |
| !! | TTAAAGTTTATACACAAATT+TGG | + | chr2.3:5331211-5331230 | MS.gene78396:intron | 15.0% |
| !!! | ACTTAATTACATTGATTATT+TGG | - | chr2.3:5329834-5329853 | None:intergenic | 15.0% |
| !!! | TAGTTAGCAATTATATTTTT+AGG | + | chr2.3:5329291-5329310 | MS.gene78396:intron | 15.0% |
| !! | AAAATATAATTGCTAACTAG+AGG | - | chr2.3:5329290-5329309 | None:intergenic | 20.0% |
| !! | AATAATTGAAAAAATTGTGG+AGG | - | chr2.3:5329234-5329253 | None:intergenic | 20.0% |
| !! | ACGATGATTGAAAAATAATA+TGG | + | chr2.3:5330508-5330527 | MS.gene78396:intron | 20.0% |
| !! | CACAATAATTGAAAAAATTG+TGG | - | chr2.3:5329237-5329256 | None:intergenic | 20.0% |
| !! | GAAAATATGAATAGAACTAT+AGG | + | chr2.3:5329765-5329784 | MS.gene78396:intron | 20.0% |
| !! | GTTTATAGTCCTTATTAAAA+AGG | - | chr2.3:5331685-5331704 | None:intergenic | 20.0% |
| !!! | ATAATATGGATTATTTGTAC+AGG | + | chr2.3:5330522-5330541 | MS.gene78396:intron | 20.0% |
| ! | AAAACCTTTATTGAACTTCA+TGG | + | chr2.3:5330364-5330383 | MS.gene78396:CDS | 25.0% |
| ! | AAACCATTTCGTAGATAATA+AGG | - | chr2.3:5331123-5331142 | None:intergenic | 25.0% |
| ! | AAACCTTTATTGAACTTCAT+GGG | + | chr2.3:5330365-5330384 | MS.gene78396:CDS | 25.0% |
| ! | AACATGATAACATACCTAAT+TGG | - | chr2.3:5329558-5329577 | None:intergenic | 25.0% |
| ! | AATCCTTATTATCTACGAAA+TGG | + | chr2.3:5331117-5331136 | MS.gene78396:intron | 25.0% |
| ! | AATGAAAGTTCTACTCTTTA+GGG | - | chr2.3:5331951-5331970 | None:intergenic | 25.0% |
| ! | AATTTATTCGTGTTCAGATT+TGG | + | chr2.3:5331895-5331914 | MS.gene78396:intron | 25.0% |
| ! | ATTAAAATATAGACTCTCCA+TGG | - | chr2.3:5332145-5332164 | None:intergenic | 25.0% |
| ! | CAAAATCAAATAGAAGCAAA+AGG | - | chr2.3:5330950-5330969 | None:intergenic | 25.0% |
| ! | GTATTTAAATTAGACGATCT+TGG | + | chr2.3:5329445-5329464 | MS.gene78396:CDS | 25.0% |
| ! | TTCAAATTAACTGTAAATGC+AGG | + | chr2.3:5330982-5331001 | MS.gene78396:intron | 25.0% |
| ! | TTTAATGTAGTTAAGGTTGA+TGG | + | chr2.3:5330248-5330267 | MS.gene78396:CDS | 25.0% |
| ! | TTTCAATGATTCTTCAAGAT+TGG | - | chr2.3:5332173-5332192 | None:intergenic | 25.0% |
| ! | TTTCATAATTCCATGTACTT+AGG | + | chr2.3:5329389-5329408 | MS.gene78396:intron | 25.0% |
| !! | ATATCTCAGTATGTTTTACT+TGG | + | chr2.3:5330846-5330865 | MS.gene78396:intron | 25.0% |
| !! | TAGTAATCAGGAAATTTTCT+TGG | - | chr2.3:5330185-5330204 | None:intergenic | 25.0% |
| !! | TGAAAGCTTTAATGTAGTTA+AGG | + | chr2.3:5330241-5330260 | MS.gene78396:CDS | 25.0% |
| !! | TTATAAACCCTTACCATTTT+TGG | - | chr2.3:5331099-5331118 | None:intergenic | 25.0% |
| !!! | AAACCAAGATGATGTTTTTT+CGG | - | chr2.3:5331555-5331574 | None:intergenic | 25.0% |
| !!! | AAAGAGAGTTTGTTTTCTAT+AGG | + | chr2.3:5329139-5329158 | MS.gene78396:CDS | 25.0% |
| !!! | AGAATATGAAAGAAAGCATT+AGG | - | chr2.3:5332597-5332616 | None:intergenic | 25.0% |
| AAAAACATCATCTTGGTTTC+AGG | + | chr2.3:5331556-5331575 | MS.gene78396:intron | 30.0% | |
| AAAACATTGTAGCAAGAGTT+TGG | - | chr2.3:5332352-5332371 | None:intergenic | 30.0% | |
| AAGAGTTAAACCTAAGTACA+TGG | - | chr2.3:5329402-5329421 | None:intergenic | 30.0% | |
| ACATTACGAGACTTACTTAT+AGG | + | chr2.3:5330416-5330435 | MS.gene78396:intron | 30.0% | |
| ACATTCGTATGTTAGTAATC+AGG | - | chr2.3:5330197-5330216 | None:intergenic | 30.0% | |
| AGGAAATTAAGAGACAAGAT+AGG | - | chr2.3:5330930-5330949 | None:intergenic | 30.0% | |
| ATGACAATAATGAAATGGGA+AGG | - | chr2.3:5331305-5331324 | None:intergenic | 30.0% | |
| ATTATTCATGAGAGTCATTG+CGG | + | chr2.3:5331336-5331355 | MS.gene78396:CDS | 30.0% | |
| CGGAATACAAAAATGAAAAG+CGG | - | chr2.3:5330792-5330811 | None:intergenic | 30.0% | |
| CTGCATGACAATAATGAAAT+GGG | - | chr2.3:5331309-5331328 | None:intergenic | 30.0% | |
| GAAAAAATTGTGGAGGAAAT+AGG | - | chr2.3:5329227-5329246 | None:intergenic | 30.0% | |
| GAATGAAAGTTCTACTCTTT+AGG | - | chr2.3:5331952-5331971 | None:intergenic | 30.0% | |
| GATATGATTCATTACTCTCT+CGG | + | chr2.3:5331502-5331521 | MS.gene78396:intron | 30.0% | |
| GATCAAAGCAGATTAAAACA+TGG | - | chr2.3:5332104-5332123 | None:intergenic | 30.0% | |
| TACTTGAAATTGAGATCTCT+TGG | + | chr2.3:5330574-5330593 | MS.gene78396:CDS | 30.0% | |
| TCAATGAACTATTATGATGC+AGG | + | chr2.3:5332666-5332685 | MS.gene78396:intron | 30.0% | |
| TCTGAACACGAATAAATTAC+CGG | - | chr2.3:5331893-5331912 | None:intergenic | 30.0% | |
| TCTTGCTCTACTAATTTGAA+CGG | - | chr2.3:5329660-5329679 | None:intergenic | 30.0% | |
| ! | TCAGCAGAGTTATATTTTCT+GGG | + | chr2.3:5331157-5331176 | MS.gene78396:intron | 30.0% |
| ! | TTCAGCAGAGTTATATTTTC+TGG | + | chr2.3:5331156-5331175 | MS.gene78396:intron | 30.0% |
| !! | ATTACCGATTTGAACGTAAA+AGG | - | chr2.3:5331270-5331289 | None:intergenic | 30.0% |
| !! | CATCAAGTGTTGGATATTAT+TGG | + | chr2.3:5329884-5329903 | MS.gene78396:intron | 30.0% |
| !! | GTTTGTTTTCTATAGGTGAT+TGG | + | chr2.3:5329146-5329165 | MS.gene78396:CDS | 30.0% |
| !! | TATTTGATGGTGTCAACTTT+GGG | + | chr2.3:5332031-5332050 | MS.gene78396:CDS | 30.0% |
| !! | TTCATTTTTGTATTCCGCAT+GGG | + | chr2.3:5330795-5330814 | MS.gene78396:CDS | 30.0% |
| !! | TTTCATTTTTGTATTCCGCA+TGG | + | chr2.3:5330794-5330813 | MS.gene78396:CDS | 30.0% |
| !!! | CATTATTTTAAGAAGATCGC+TGG | + | chr2.3:5331658-5331677 | MS.gene78396:intron | 30.0% |
| AAAACTCCTTTATATGCCAC+TGG | + | chr2.3:5330658-5330677 | MS.gene78396:CDS | 35.0% | |
| AATTGCAGATGTTTGATGCT+TGG | - | chr2.3:5331065-5331084 | None:intergenic | 35.0% | |
| ACCTATTTGCACTTTCTTCA+AGG | + | chr2.3:5329177-5329196 | MS.gene78396:CDS | 35.0% | |
| ACTCCCATGAAGTTCAATAA+AGG | - | chr2.3:5330371-5330390 | None:intergenic | 35.0% | |
| ATGAAGTTAACGACGATTAG+TGG | + | chr2.3:5332391-5332410 | MS.gene78396:intron | 35.0% | |
| ATGGATGAAGTTACATACCA+TGG | - | chr2.3:5332085-5332104 | None:intergenic | 35.0% | |
| ATTCGTGTTCAGATTTGGAA+AGG | + | chr2.3:5331900-5331919 | MS.gene78396:intron | 35.0% | |
| CCATTTCATTATTGTCATGC+AGG | + | chr2.3:5331307-5331326 | MS.gene78396:intron | 35.0% | |
| CCTGCATGACAATAATGAAA+TGG | - | chr2.3:5331310-5331329 | None:intergenic | 35.0% | |
| CGATTTGCCAAAAATGGTAA+GGG | + | chr2.3:5331089-5331108 | MS.gene78396:intron | 35.0% | |
| CTATCAGGAAAGTAGAAGAA+TGG | - | chr2.3:5330132-5330151 | None:intergenic | 35.0% | |
| CTCTATTCAATCAAGCATCA+AGG | + | chr2.3:5329952-5329971 | MS.gene78396:CDS | 35.0% | |
| CTGAACACGAATAAATTACC+GGG | - | chr2.3:5331892-5331911 | None:intergenic | 35.0% | |
| CTGAGATATAACATGTGCAA+TGG | - | chr2.3:5330835-5330854 | None:intergenic | 35.0% | |
| CTTCCGAAAAAACATCATCT+TGG | + | chr2.3:5331549-5331568 | MS.gene78396:intron | 35.0% | |
| GAACTATTATGATGCAGGAT+TGG | + | chr2.3:5332671-5332690 | MS.gene78396:intron | 35.0% | |
| GGTCGAATCATTAAAGATGT+AGG | - | chr2.3:5330476-5330495 | None:intergenic | 35.0% | |
| GTTGACACCATCAAATACAA+AGG | - | chr2.3:5332028-5332047 | None:intergenic | 35.0% | |
| TAATATAATGCAGATGGGCA+TGG | + | chr2.3:5331763-5331782 | MS.gene78396:intron | 35.0% | |
| TACATACCAGTGGCATATAA+AGG | - | chr2.3:5330667-5330686 | None:intergenic | 35.0% | |
| TATAGCATCATTGGTCGATA+CGG | + | chr2.3:5329522-5329541 | MS.gene78396:CDS | 35.0% | |
| TCATGTCATTCTTCATTCTC+AGG | + | chr2.3:5332424-5332443 | MS.gene78396:intron | 35.0% | |
| TCTTCATTCTCAGGTTATAG+TGG | + | chr2.3:5332433-5332452 | MS.gene78396:intron | 35.0% | |
| TGCTAACAAGGACTATGAAA+AGG | + | chr2.3:5331598-5331617 | MS.gene78396:CDS | 35.0% | |
| TGCTTGATTGAATAGAGCTA+TGG | - | chr2.3:5329949-5329968 | None:intergenic | 35.0% | |
| TGTTATAACGCATCAAGTGT+TGG | + | chr2.3:5329874-5329893 | MS.gene78396:intron | 35.0% | |
| TGTTGATCCAACTCGAAAAA+TGG | + | chr2.3:5329797-5329816 | MS.gene78396:intron | 35.0% | |
| TGTTTGTGTTAGCGCTTTAT+AGG | + | chr2.3:5332317-5332336 | MS.gene78396:intron | 35.0% | |
| TTAATGATTCGACCTCGTAT+CGG | + | chr2.3:5330482-5330501 | MS.gene78396:intron | 35.0% | |
| TTCAAAAAGCAATTAGCGAG+CGG | - | chr2.3:5331709-5331728 | None:intergenic | 35.0% | |
| ! | AATACTAGTCTGCAGTAAGA+AGG | - | chr2.3:5329430-5329449 | None:intergenic | 35.0% |
| ! | AATTTCAAGTACTGCATTGC+AGG | - | chr2.3:5330565-5330584 | None:intergenic | 35.0% |
| ! | AGAAGAATGGTACTTTTCTG+CGG | - | chr2.3:5330119-5330138 | None:intergenic | 35.0% |
| ! | ATCGCTGGTCCTTTTTAATA+AGG | + | chr2.3:5331673-5331692 | MS.gene78396:intron | 35.0% |
| ! | CACTCCTTTTACGTTCAAAT+CGG | + | chr2.3:5331263-5331282 | MS.gene78396:intron | 35.0% |
| ! | CAGCAGAGTTATATTTTCTG+GGG | + | chr2.3:5331158-5331177 | MS.gene78396:intron | 35.0% |
| ! | TCCTTGAAGAAAGTGCAAAT+AGG | - | chr2.3:5329181-5329200 | None:intergenic | 35.0% |
| ! | TCGATTTGCCAAAAATGGTA+AGG | + | chr2.3:5331088-5331107 | MS.gene78396:intron | 35.0% |
| ! | TGGATATTATTGGTCTCTAC+AGG | + | chr2.3:5329894-5329913 | MS.gene78396:intron | 35.0% |
| ! | TGTGTTGACAAACTCAGATT+CGG | + | chr2.3:5330214-5330233 | MS.gene78396:intron | 35.0% |
| ! | TGTTTGGCCTTTGTATTTGA+TGG | + | chr2.3:5332018-5332037 | MS.gene78396:CDS | 35.0% |
| !! | ATTTGATGGTGTCAACTTTG+GGG | + | chr2.3:5332032-5332051 | MS.gene78396:CDS | 35.0% |
| !! | GTATGTTTGTTGTAATCCAG+TGG | + | chr2.3:5330737-5330756 | MS.gene78396:intron | 35.0% |
| !! | GTATTTGATGGTGTCAACTT+TGG | + | chr2.3:5332030-5332049 | MS.gene78396:CDS | 35.0% |
| !! | TGGTGGATTCATTGGAATTT+GGG | + | chr2.3:5332496-5332515 | MS.gene78396:CDS | 35.0% |
| !! | TTCGATCGATTTGCCAAAAA+TGG | + | chr2.3:5331083-5331102 | MS.gene78396:CDS | 35.0% |
| !! | TTTATTTTCAGCCTTCTCCA+TGG | + | chr2.3:5332125-5332144 | MS.gene78396:intron | 35.0% |
| !!! | CTACTTATTTTGTCATCTGC+TGG | + | chr2.3:5332476-5332495 | MS.gene78396:CDS | 35.0% |
| !!! | CTATATTTTGGAGGTATCCT+TGG | + | chr2.3:5330308-5330327 | MS.gene78396:CDS | 35.0% |
| !!! | CTTCTATCCATTTTTCGAGT+TGG | - | chr2.3:5329807-5329826 | None:intergenic | 35.0% |
| !!! | GCTATGTCTATCGACTTTTT+TGG | - | chr2.3:5329638-5329657 | None:intergenic | 35.0% |
| ATACAAAGGCCAAACAGTTC+AGG | - | chr2.3:5332014-5332033 | None:intergenic | 40.0% | |
| ATATAGACTCTCCATGGAGA+AGG | - | chr2.3:5332139-5332158 | None:intergenic | 40.0% | |
| ATGAGTTTAAGAGCCTTTGC+TGG | + | chr2.3:5332536-5332555 | MS.gene78396:CDS | 40.0% | |
| CATACCTAATTGGCCAATGA+AGG | - | chr2.3:5329548-5329567 | None:intergenic | 40.0% | |
| CTCAAATCTTGTGCATGTGT+TGG | - | chr2.3:5329697-5329716 | None:intergenic | 40.0% | |
| CTTCTTTCATTAGCGATGCA+GGG | + | chr2.3:5330610-5330629 | MS.gene78396:CDS | 40.0% | |
| CTTGCATTCATTCTTGGAAC+AGG | + | chr2.3:5331800-5331819 | MS.gene78396:CDS | 40.0% | |
| CTTGTTTGTTCAAACTCCAC+AGG | - | chr2.3:5331028-5331047 | None:intergenic | 40.0% | |
| GAAGTTACATACCATGGAGA+AGG | - | chr2.3:5332079-5332098 | None:intergenic | 40.0% | |
| GCTAACACAAACACAGATAC+TGG | - | chr2.3:5332310-5332329 | None:intergenic | 40.0% | |
| TACAAAGGCCAAACAGTTCA+GGG | - | chr2.3:5332013-5332032 | None:intergenic | 40.0% | |
| TACTTTCAGCTATACTCCTG+TGG | + | chr2.3:5331009-5331028 | MS.gene78396:CDS | 40.0% | |
| TATCCATTCACTTGTGAGAC+AGG | - | chr2.3:5329729-5329748 | None:intergenic | 40.0% | |
| TATGATGCAGGATTGGAACT+GGG | + | chr2.3:5332678-5332697 | MS.gene78396:intron | 40.0% | |
| TCCAAATGTTGCAAGTGTCT+TGG | - | chr2.3:5332632-5332651 | None:intergenic | 40.0% | |
| TCCAAGACACTTGCAACATT+TGG | + | chr2.3:5332628-5332647 | MS.gene78396:intron | 40.0% | |
| TCCTACACCTCATTAGAGTT+GGG | + | chr2.3:5331864-5331883 | MS.gene78396:CDS | 40.0% | |
| TCTTCTTTCATTAGCGATGC+AGG | + | chr2.3:5330609-5330628 | MS.gene78396:CDS | 40.0% | |
| TGAACGTAAAAGGAGTGACA+TGG | - | chr2.3:5331260-5331279 | None:intergenic | 40.0% | |
| TGTAGAACACCTGCAATACT+CGG | - | chr2.3:5331640-5331659 | None:intergenic | 40.0% | |
| TTATGATGCAGGATTGGAAC+TGG | + | chr2.3:5332677-5332696 | MS.gene78396:intron | 40.0% | |
| TTCAAGTCTGTCTGCAAGTT+TGG | + | chr2.3:5331425-5331444 | MS.gene78396:CDS | 40.0% | |
| TTGGCACTTGCATTCATTCT+TGG | + | chr2.3:5331794-5331813 | MS.gene78396:CDS | 40.0% | |
| TTTCTGCGGTAAGAACTCTT+TGG | - | chr2.3:5330105-5330124 | None:intergenic | 40.0% | |
| ! | AACTCTTTGGTTTCAGCATC+CGG | - | chr2.3:5330092-5330111 | None:intergenic | 40.0% |
| ! | AAGTTGTGACACTGACTAGT+GGG | - | chr2.3:5329989-5330008 | None:intergenic | 40.0% |
| ! | CAGTGTCACAACTTCTTTTG+TGG | + | chr2.3:5329995-5330014 | MS.gene78396:CDS | 40.0% |
| ! | GGTTTTCCTGTTGAGAAACA+AGG | - | chr2.3:5330164-5330183 | None:intergenic | 40.0% |
| ! | GTATCGACCAATGATGCTAT+AGG | - | chr2.3:5329523-5329542 | None:intergenic | 40.0% |
| !! | AGGTTGATGGAAGTAAGAGA+AGG | + | chr2.3:5330261-5330280 | MS.gene78396:CDS | 40.0% |
| !! | CTGGTGGATTCATTGGAATT+TGG | + | chr2.3:5332495-5332514 | MS.gene78396:CDS | 40.0% |
| !!! | CTTATTTTGTCATCTGCTGG+TGG | + | chr2.3:5332479-5332498 | MS.gene78396:CDS | 40.0% |
| AAGCCTGTCTCACAAGTGAA+TGG | + | chr2.3:5329723-5329742 | MS.gene78396:intron | 45.0% | |
| ACAAAGGCCAAACAGTTCAG+GGG | - | chr2.3:5332012-5332031 | None:intergenic | 45.0% | |
| ACAGACTTGAAATGCAGCCA+TGG | - | chr2.3:5331416-5331435 | None:intergenic | 45.0% | |
| ACGTAAAAGGAGTGACATGG+AGG | - | chr2.3:5331257-5331276 | None:intergenic | 45.0% | |
| AGTCTGTCTGCAAGTTTGGT+TGG | + | chr2.3:5331429-5331448 | MS.gene78396:CDS | 45.0% | |
| CAGAAATAAGCAACGTTGCC+TGG | - | chr2.3:5330340-5330359 | None:intergenic | 45.0% | |
| CATATCATATCTCACCTGCC+CGG | - | chr2.3:5331488-5331507 | None:intergenic | 45.0% | |
| CCTACACCTCATTAGAGTTG+GGG | + | chr2.3:5331865-5331884 | MS.gene78396:CDS | 45.0% | |
| CTTGGAACAGGATTGCACTT+TGG | + | chr2.3:5331812-5331831 | MS.gene78396:CDS | 45.0% | |
| GCACTTTCTTCAAGGATGCT+AGG | + | chr2.3:5329185-5329204 | MS.gene78396:CDS | 45.0% | |
| GCTAATGAAAGAAGAACCGC+AGG | - | chr2.3:5330604-5330623 | None:intergenic | 45.0% | |
| GGCTGATCCTATAGCATCAT+TGG | + | chr2.3:5329513-5329532 | MS.gene78396:CDS | 45.0% | |
| GTAGAACACCTGCAATACTC+GGG | - | chr2.3:5331639-5331658 | None:intergenic | 45.0% | |
| GTCCTACACCTCATTAGAGT+TGG | + | chr2.3:5331863-5331882 | MS.gene78396:CDS | 45.0% | |
| GTTGAGTGAGTGCTACAAAC+TGG | - | chr2.3:5331990-5332009 | None:intergenic | 45.0% | |
| TAGCTCCTAAGGAATTCCCA+TGG | - | chr2.3:5332710-5332729 | None:intergenic | 45.0% | |
| TCCTGTTGAGAAACAAGGCT+TGG | - | chr2.3:5330159-5330178 | None:intergenic | 45.0% | |
| TGCAGATGTTTGATGCTTGG+AGG | - | chr2.3:5331062-5331081 | None:intergenic | 45.0% | |
| TGCATATTCAGCCTTCTCCA+TGG | + | chr2.3:5332065-5332084 | MS.gene78396:CDS | 45.0% | |
| TGCATTGCAGGATGTAGCAT+AGG | - | chr2.3:5330553-5330572 | None:intergenic | 45.0% | |
| TTACCTCAAGAAGCCAGCAA+AGG | - | chr2.3:5332552-5332571 | None:intergenic | 45.0% | |
| ! | CACAACTTCTTTTGTGGCTG+AGG | + | chr2.3:5330001-5330020 | MS.gene78396:CDS | 45.0% |
| ! | GAAGTTGTGACACTGACTAG+TGG | - | chr2.3:5329990-5330009 | None:intergenic | 45.0% |
| ! | GCTTCGTCAGCGCTATATTT+TGG | + | chr2.3:5330296-5330315 | MS.gene78396:CDS | 45.0% |
| ! | TGCAGGTGCATTTGCTAACA+AGG | + | chr2.3:5331586-5331605 | MS.gene78396:CDS | 45.0% |
| !! | GTTTGTTGTAATCCAGTGGC+AGG | + | chr2.3:5330741-5330760 | MS.gene78396:intron | 45.0% |
| !! | TCATCTGCTGGTGGATTCAT+TGG | + | chr2.3:5332488-5332507 | MS.gene78396:CDS | 45.0% |
| !! | TCGTCAGCGCTATATTTTGG+AGG | + | chr2.3:5330299-5330318 | MS.gene78396:CDS | 45.0% |
| AATTGCTTTGCCCGCTGCAA+TGG | + | chr2.3:5329483-5329502 | MS.gene78396:CDS | 50.0% | |
| ACAAGGCTTGGCAGACTATC+AGG | - | chr2.3:5330147-5330166 | None:intergenic | 50.0% | |
| ACACCACGGATCAACATCCA+TGG | + | chr2.3:5331396-5331415 | MS.gene78396:CDS | 50.0% | |
| ACGGCCTTCATTGGCCAATT+AGG | + | chr2.3:5329541-5329560 | MS.gene78396:CDS | 50.0% | |
| AGCTCACAGGTAGAGGAGAA+TGG | + | chr2.3:5330044-5330063 | MS.gene78396:CDS | 50.0% | |
| ATGCAGATGGGCATGGTTCT+TGG | + | chr2.3:5331770-5331789 | MS.gene78396:intron | 50.0% | |
| CACTCAACCCCTGAACTGTT+TGG | + | chr2.3:5332002-5332021 | MS.gene78396:CDS | 50.0% | |
| CAGGACCATGGGAATTCCTT+AGG | + | chr2.3:5332702-5332721 | MS.gene78396:CDS | 50.0% | |
| CCCCAACTCTAATGAGGTGT+AGG | - | chr2.3:5331868-5331887 | None:intergenic | 50.0% | |
| GATGGGCATGGTTCTTGGAT+TGG | + | chr2.3:5331775-5331794 | MS.gene78396:intron | 50.0% | |
| GCATCATTAGCTGCACACCA+CGG | + | chr2.3:5331382-5331401 | MS.gene78396:CDS | 50.0% | |
| GGTAACATTCTGCGTGACAC+TGG | + | chr2.3:5331357-5331376 | MS.gene78396:CDS | 50.0% | |
| GGTAGAGGAGAATGGATGCT+TGG | + | chr2.3:5330052-5330071 | MS.gene78396:CDS | 50.0% | |
| GTATTCCGCATGGGTGTCAA+CGG | + | chr2.3:5330804-5330823 | MS.gene78396:CDS | 50.0% | |
| TACTCGGGTAGCAGTTGTTG+AGG | - | chr2.3:5331624-5331643 | None:intergenic | 50.0% | |
| TGGTTTCAGGCGATTCTTGC+AGG | + | chr2.3:5331569-5331588 | MS.gene78396:intron | 50.0% | |
| TGTCGACGCATACATACCAG+TGG | - | chr2.3:5330677-5330696 | None:intergenic | 50.0% | |
| TTCGTCAAATCTCCTGCCAC+TGG | - | chr2.3:5330756-5330775 | None:intergenic | 50.0% | |
| TTGGTCGATACGGCCTTCAT+TGG | + | chr2.3:5329532-5329551 | MS.gene78396:CDS | 50.0% | |
| ! | AACTGCTACCCGAGTATTGC+AGG | + | chr2.3:5331628-5331647 | MS.gene78396:CDS | 50.0% |
| ! | AATCATCGTGTGCCGATACG+AGG | - | chr2.3:5330497-5330516 | None:intergenic | 50.0% |
| ! | ATTGGTCTCTACAGGTCCAG+TGG | + | chr2.3:5329902-5329921 | MS.gene78396:intron | 50.0% |
| ! | TCTTTGGTTTCAGCATCCGG+AGG | - | chr2.3:5330089-5330108 | None:intergenic | 50.0% |
| !! | GCCAAGCCTTGTTTCTCAAC+AGG | + | chr2.3:5330155-5330174 | MS.gene78396:intron | 50.0% |
| !! | TATAGCGCTGACGAAGCTGA+AGG | - | chr2.3:5330293-5330312 | None:intergenic | 50.0% |
| AGCCAGACCATCCGCAAGAA+GGG | - | chr2.3:5331461-5331480 | None:intergenic | 55.0% | |
| AGCCGTCAAAGCCATTGCAG+CGG | - | chr2.3:5329497-5329516 | None:intergenic | 55.0% | |
| CAGCCATGGATGTTGATCCG+TGG | - | chr2.3:5331402-5331421 | None:intergenic | 55.0% | |
| CCTCATTAGAGTTGGGGTCC+CGG | + | chr2.3:5331871-5331890 | MS.gene78396:CDS | 55.0% | |
| CTGTGAGCTTGCGTCGCTTA+AGG | - | chr2.3:5330033-5330052 | None:intergenic | 55.0% | |
| CTTAAGCGACGCAAGCTCAC+AGG | + | chr2.3:5330031-5330050 | MS.gene78396:CDS | 55.0% | |
| GTTGGCAGTGTCCCTTCTTG+CGG | + | chr2.3:5331447-5331466 | MS.gene78396:CDS | 55.0% | |
| TAAGCAACGTTGCCTGGACG+AGG | - | chr2.3:5330334-5330353 | None:intergenic | 55.0% | |
| TGCAGGATTGGAACTGGGTC+AGG | + | chr2.3:5332683-5332702 | MS.gene78396:intron | 55.0% | |
| TGGAACTGGGTCAGGACCAT+GGG | + | chr2.3:5332691-5332710 | MS.gene78396:CDS | 55.0% | |
| TTGGAACTGGGTCAGGACCA+TGG | + | chr2.3:5332690-5332709 | MS.gene78396:CDS | 55.0% | |
| ! | GCGATGCAGGGAGTTTTTCG+AGG | + | chr2.3:5330622-5330641 | MS.gene78396:CDS | 55.0% |
| !! | GAGATCTCTTGGTGCTCCTG+CGG | + | chr2.3:5330585-5330604 | MS.gene78396:CDS | 55.0% |
| !! | GAGCCTTTGCTGGCTTCTTG+AGG | + | chr2.3:5332546-5332565 | MS.gene78396:CDS | 55.0% |
| AGGTATCCTTGGCCTCGTCC+AGG | + | chr2.3:5330319-5330338 | MS.gene78396:CDS | 60.0% | |
| CAGCCAGACCATCCGCAAGA+AGG | - | chr2.3:5331462-5331481 | None:intergenic | 60.0% | |
| CCGGGACCCCAACTCTAATG+AGG | - | chr2.3:5331874-5331893 | None:intergenic | 60.0% | |
| CCTACTGCAGCAAGCTCCAC+TGG | - | chr2.3:5329921-5329940 | None:intergenic | 60.0% | |
| CGACGCAAGCTCACAGGTAG+AGG | + | chr2.3:5330037-5330056 | MS.gene78396:CDS | 60.0% | |
| CTGCACCGTTGACACCCATG+CGG | - | chr2.3:5330812-5330831 | None:intergenic | 60.0% | |
| CTTGGAAGCTGCGACACCTC+CGG | + | chr2.3:5330070-5330089 | MS.gene78396:CDS | 60.0% | |
| GCAGTGTCCCTTCTTGCGGA+TGG | + | chr2.3:5331451-5331470 | MS.gene78396:CDS | 60.0% | |
| GCCGTCAAAGCCATTGCAGC+GGG | - | chr2.3:5329496-5329515 | None:intergenic | 60.0% | |
| GTCCCTTCTTGCGGATGGTC+TGG | + | chr2.3:5331456-5331475 | MS.gene78396:CDS | 60.0% | |
| !! | CCAGTGGAGCTTGCTGCAGT+AGG | + | chr2.3:5329918-5329937 | MS.gene78396:CDS | 60.0% |
| !! | GCCCGCTGCAATGGCTTTGA+CGG | + | chr2.3:5329492-5329511 | MS.gene78396:CDS | 60.0% |
| ACGTTGCCTGGACGAGGCCA+AGG | - | chr2.3:5330328-5330347 | None:intergenic | 65.0% | |
| CGGATGGTCTGGCTGTTGCC+GGG | + | chr2.3:5331467-5331486 | MS.gene78396:CDS | 65.0% | |
| GCGGATGGTCTGGCTGTTGC+CGG | + | chr2.3:5331466-5331485 | MS.gene78396:CDS | 65.0% | |
| TGGTCTGGCTGTTGCCGGGC+AGG | + | chr2.3:5331471-5331490 | MS.gene78396:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 5329130 | 5332730 | 5329130 | ID=MS.gene78396 |
| chr2.3 | mRNA | 5329130 | 5332730 | 5329130 | ID=MS.gene78396.t1;Parent=MS.gene78396 |
| chr2.3 | exon | 5329130 | 5329206 | 5329130 | ID=MS.gene78396.t1.exon1;Parent=MS.gene78396.t1 |
| chr2.3 | CDS | 5329130 | 5329206 | 5329130 | ID=cds.MS.gene78396.t1;Parent=MS.gene78396.t1 |
| chr2.3 | exon | 5329441 | 5329562 | 5329441 | ID=MS.gene78396.t1.exon2;Parent=MS.gene78396.t1 |
| chr2.3 | CDS | 5329441 | 5329562 | 5329441 | ID=cds.MS.gene78396.t1;Parent=MS.gene78396.t1 |
| chr2.3 | exon | 5329916 | 5330125 | 5329916 | ID=MS.gene78396.t1.exon3;Parent=MS.gene78396.t1 |
| chr2.3 | CDS | 5329916 | 5330125 | 5329916 | ID=cds.MS.gene78396.t1;Parent=MS.gene78396.t1 |
| chr2.3 | exon | 5330231 | 5330397 | 5330231 | ID=MS.gene78396.t1.exon4;Parent=MS.gene78396.t1 |
| chr2.3 | CDS | 5330231 | 5330397 | 5330231 | ID=cds.MS.gene78396.t1;Parent=MS.gene78396.t1 |
| chr2.3 | exon | 5330544 | 5330679 | 5330544 | ID=MS.gene78396.t1.exon5;Parent=MS.gene78396.t1 |
| chr2.3 | CDS | 5330544 | 5330679 | 5330544 | ID=cds.MS.gene78396.t1;Parent=MS.gene78396.t1 |
| chr2.3 | exon | 5330757 | 5330853 | 5330757 | ID=MS.gene78396.t1.exon6;Parent=MS.gene78396.t1 |
| chr2.3 | CDS | 5330757 | 5330853 | 5330757 | ID=cds.MS.gene78396.t1;Parent=MS.gene78396.t1 |
| chr2.3 | exon | 5331004 | 5331104 | 5331004 | ID=MS.gene78396.t1.exon7;Parent=MS.gene78396.t1 |
| chr2.3 | CDS | 5331004 | 5331104 | 5331004 | ID=cds.MS.gene78396.t1;Parent=MS.gene78396.t1 |
| chr2.3 | exon | 5331329 | 5331492 | 5331329 | ID=MS.gene78396.t1.exon8;Parent=MS.gene78396.t1 |
| chr2.3 | CDS | 5331329 | 5331492 | 5331329 | ID=cds.MS.gene78396.t1;Parent=MS.gene78396.t1 |
| chr2.3 | exon | 5331578 | 5331649 | 5331578 | ID=MS.gene78396.t1.exon9;Parent=MS.gene78396.t1 |
| chr2.3 | CDS | 5331578 | 5331649 | 5331578 | ID=cds.MS.gene78396.t1;Parent=MS.gene78396.t1 |
| chr2.3 | exon | 5331776 | 5331892 | 5331776 | ID=MS.gene78396.t1.exon10;Parent=MS.gene78396.t1 |
| chr2.3 | CDS | 5331776 | 5331892 | 5331776 | ID=cds.MS.gene78396.t1;Parent=MS.gene78396.t1 |
| chr2.3 | exon | 5331991 | 5332086 | 5331991 | ID=MS.gene78396.t1.exon11;Parent=MS.gene78396.t1 |
| chr2.3 | CDS | 5331991 | 5332086 | 5331991 | ID=cds.MS.gene78396.t1;Parent=MS.gene78396.t1 |
| chr2.3 | exon | 5332446 | 5332567 | 5332446 | ID=MS.gene78396.t1.exon12;Parent=MS.gene78396.t1 |
| chr2.3 | CDS | 5332446 | 5332567 | 5332446 | ID=cds.MS.gene78396.t1;Parent=MS.gene78396.t1 |
| chr2.3 | exon | 5332688 | 5332730 | 5332688 | ID=MS.gene78396.t1.exon13;Parent=MS.gene78396.t1 |
| chr2.3 | CDS | 5332688 | 5332730 | 5332688 | ID=cds.MS.gene78396.t1;Parent=MS.gene78396.t1 |
| Gene Sequence |
| Protein sequence |
