Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45542.t1 | AFL69846.1 | 98.4 | 507 | 8 | 0 | 1 | 507 | 1 | 507 | 5.00E-270 | 939.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45542.t1 | Q9SYD6 | 70.4 | 506 | 140 | 4 | 12 | 507 | 10 | 515 | 1.1e-185 | 651.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45542.t1 | G7IRZ8 | 98.0 | 507 | 10 | 0 | 1 | 507 | 1 | 507 | 3.6e-270 | 939.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049232 | MS.gene45542 | 0.874519 | 6.34E-68 | -1.69E-46 |
| MS.gene049396 | MS.gene45542 | 0.820704 | 5.96E-53 | -1.69E-46 |
| MS.gene049633 | MS.gene45542 | 0.833679 | 4.64E-56 | -1.69E-46 |
| MS.gene049656 | MS.gene45542 | 0.816056 | 6.73E-52 | -1.69E-46 |
| MS.gene049657 | MS.gene45542 | 0.833083 | 6.54E-56 | -1.69E-46 |
| MS.gene05010 | MS.gene45542 | 0.808603 | 2.86E-50 | -1.69E-46 |
| MS.gene050170 | MS.gene45542 | 0.834706 | 2.57E-56 | -1.69E-46 |
| MS.gene050216 | MS.gene45542 | 0.816535 | 5.26E-52 | -1.69E-46 |
| MS.gene050323 | MS.gene45542 | 0.847187 | 1.36E-59 | -1.69E-46 |
| MS.gene050496 | MS.gene45542 | 0.808813 | 2.58E-50 | -1.69E-46 |
| MS.gene050499 | MS.gene45542 | 0.824808 | 6.60E-54 | -1.69E-46 |
| MS.gene050502 | MS.gene45542 | 0.829752 | 4.32E-55 | -1.69E-46 |
| MS.gene050504 | MS.gene45542 | 0.800238 | 1.58E-48 | -1.69E-46 |
| MS.gene050697 | MS.gene45542 | 0.830405 | 2.99E-55 | -1.69E-46 |
| MS.gene05080 | MS.gene45542 | 0.805597 | 1.24E-49 | -1.69E-46 |
| MS.gene050868 | MS.gene45542 | 0.857652 | 1.41E-62 | -1.69E-46 |
| MS.gene050871 | MS.gene45542 | 0.858948 | 5.80E-63 | -1.69E-46 |
| MS.gene051268 | MS.gene45542 | 0.801171 | 1.02E-48 | -1.69E-46 |
| MS.gene051509 | MS.gene45542 | 0.847475 | 1.13E-59 | -1.69E-46 |
| MS.gene052066 | MS.gene45542 | 0.898664 | 4.25E-77 | -1.69E-46 |
| MS.gene052966 | MS.gene45542 | 0.826798 | 2.23E-54 | -1.69E-46 |
| MS.gene053203 | MS.gene45542 | 0.819361 | 1.21E-52 | -1.69E-46 |
| MS.gene053574 | MS.gene45542 | 0.826496 | 2.63E-54 | -1.69E-46 |
| MS.gene053626 | MS.gene45542 | 0.804593 | 2.01E-49 | -1.69E-46 |
| MS.gene053633 | MS.gene45542 | 0.866493 | 2.74E-65 | -1.69E-46 |
| MS.gene054595 | MS.gene45542 | 0.806156 | 9.43E-50 | -1.69E-46 |
| MS.gene05589 | MS.gene45542 | 0.823847 | 1.11E-53 | -1.69E-46 |
| MS.gene056166 | MS.gene45542 | 0.844296 | 8.26E-59 | -1.69E-46 |
| MS.gene056387 | MS.gene45542 | 0.812978 | 3.23E-51 | -1.69E-46 |
| MS.gene056422 | MS.gene45542 | 0.816806 | 4.57E-52 | -1.69E-46 |
| MS.gene056446 | MS.gene45542 | 0.802272 | 6.07E-49 | -1.69E-46 |
| MS.gene056504 | MS.gene45542 | 0.840914 | 6.52E-58 | -1.69E-46 |
| MS.gene056510 | MS.gene45542 | 0.840193 | 1.01E-57 | -1.69E-46 |
| MS.gene057086 | MS.gene45542 | 0.825405 | 4.77E-54 | -1.69E-46 |
| MS.gene057872 | MS.gene45542 | 0.823363 | 1.44E-53 | -1.69E-46 |
| MS.gene05787 | MS.gene45542 | 0.811414 | 7.09E-51 | -1.69E-46 |
| MS.gene058171 | MS.gene45542 | -0.800322 | 1.52E-48 | -1.69E-46 |
| MS.gene058173 | MS.gene45542 | -0.810311 | 1.23E-50 | -1.69E-46 |
| MS.gene058175 | MS.gene45542 | -0.808287 | 3.34E-50 | -1.69E-46 |
| MS.gene05837 | MS.gene45542 | 0.823759 | 1.17E-53 | -1.69E-46 |
| MS.gene059305 | MS.gene45542 | 0.838502 | 2.77E-57 | -1.69E-46 |
| MS.gene059367 | MS.gene45542 | 0.819733 | 9.95E-53 | -1.69E-46 |
| MS.gene059368 | MS.gene45542 | 0.800738 | 1.25E-48 | -1.69E-46 |
| MS.gene059865 | MS.gene45542 | 0.859622 | 3.64E-63 | -1.69E-46 |
| MS.gene05996 | MS.gene45542 | 0.808052 | 3.74E-50 | -1.69E-46 |
| MS.gene06000 | MS.gene45542 | 0.821095 | 4.85E-53 | -1.69E-46 |
| MS.gene060187 | MS.gene45542 | -0.81671 | 4.81E-52 | -1.69E-46 |
| MS.gene060339 | MS.gene45542 | 0.806052 | 9.92E-50 | -1.69E-46 |
| MS.gene060482 | MS.gene45542 | 0.813355 | 2.67E-51 | -1.69E-46 |
| MS.gene060595 | MS.gene45542 | -0.813505 | 2.47E-51 | -1.69E-46 |
| MS.gene060778 | MS.gene45542 | 0.842498 | 2.49E-58 | -1.69E-46 |
| MS.gene06097 | MS.gene45542 | 0.810314 | 1.23E-50 | -1.69E-46 |
| MS.gene060982 | MS.gene45542 | 0.850441 | 1.70E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene45542 | MS.gene024346 | PPI |
| MS.gene45542 | MS.gene86725 | PPI |
| MS.gene45542 | MS.gene016686 | PPI |
| MS.gene60481 | MS.gene45542 | PPI |
| MS.gene45542 | MS.gene23590 | PPI |
| MS.gene98678 | MS.gene45542 | PPI |
| MS.gene45542 | MS.gene23394 | PPI |
| MS.gene45542 | MS.gene23395 | PPI |
| MS.gene45542 | MS.gene23591 | PPI |
| MS.gene45542 | MS.gene42884 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45542.t1 | MTR_2g097900 | 98.028 | 507 | 10 | 0 | 1 | 507 | 1 | 507 | 0.0 | 997 |
| MS.gene45542.t1 | MTR_2g097900 | 97.230 | 361 | 10 | 0 | 1 | 361 | 1 | 361 | 0.0 | 706 |
| MS.gene45542.t1 | MTR_3g029510 | 59.770 | 522 | 176 | 3 | 16 | 506 | 17 | 535 | 0.0 | 610 |
| MS.gene45542.t1 | MTR_8g037175 | 56.705 | 522 | 191 | 4 | 21 | 507 | 6 | 527 | 0.0 | 571 |
| MS.gene45542.t1 | MTR_8g036660 | 56.685 | 531 | 189 | 5 | 12 | 506 | 81 | 606 | 0.0 | 570 |
| MS.gene45542.t1 | MTR_8g037170 | 56.685 | 531 | 189 | 5 | 12 | 506 | 13 | 538 | 0.0 | 569 |
| MS.gene45542.t1 | MTR_8g037170 | 55.515 | 544 | 188 | 5 | 12 | 506 | 13 | 551 | 0.0 | 565 |
| MS.gene45542.t1 | MTR_5g099020 | 43.067 | 476 | 236 | 3 | 31 | 506 | 109 | 549 | 1.48e-126 | 380 |
| MS.gene45542.t1 | MTR_5g099020 | 43.067 | 476 | 236 | 3 | 31 | 506 | 109 | 549 | 5.42e-126 | 380 |
| MS.gene45542.t1 | MTR_7g070210 | 43.377 | 385 | 190 | 1 | 29 | 413 | 110 | 466 | 9.12e-91 | 286 |
| MS.gene45542.t1 | MTR_4g071390 | 25.793 | 473 | 284 | 15 | 36 | 495 | 95 | 513 | 4.49e-20 | 93.6 |
| MS.gene45542.t1 | MTR_4g071370 | 25.417 | 480 | 288 | 15 | 36 | 500 | 108 | 532 | 2.77e-19 | 91.3 |
| MS.gene45542.t1 | MTR_4g071445 | 24.211 | 475 | 300 | 11 | 36 | 500 | 106 | 530 | 2.31e-18 | 88.6 |
| MS.gene45542.t1 | MTR_8g037130 | 77.083 | 48 | 11 | 0 | 20 | 67 | 5 | 52 | 2.39e-17 | 76.6 |
| MS.gene45542.t1 | MTR_4g071465 | 24.632 | 475 | 298 | 13 | 36 | 500 | 101 | 525 | 2.45e-16 | 82.0 |
| MS.gene45542.t1 | MTR_4g071370 | 25.485 | 412 | 241 | 14 | 36 | 432 | 108 | 468 | 1.55e-14 | 76.3 |
| MS.gene45542.t1 | MTR_4g071420 | 24.528 | 477 | 296 | 15 | 36 | 500 | 109 | 533 | 2.93e-14 | 75.5 |
| MS.gene45542.t1 | MTR_4g071370 | 25.193 | 389 | 229 | 12 | 36 | 413 | 108 | 445 | 2.15e-13 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45542.t1 | AT1G51340 | 70.356 | 506 | 140 | 4 | 12 | 507 | 10 | 515 | 0.0 | 668 |
| MS.gene45542.t1 | AT1G51340 | 70.356 | 506 | 140 | 4 | 12 | 507 | 10 | 515 | 0.0 | 668 |
| MS.gene45542.t1 | AT1G51340 | 70.356 | 506 | 140 | 4 | 12 | 507 | 10 | 515 | 0.0 | 668 |
| MS.gene45542.t1 | AT1G51340 | 71.224 | 490 | 131 | 4 | 28 | 507 | 20 | 509 | 0.0 | 657 |
| MS.gene45542.t1 | AT3G08040 | 59.881 | 506 | 186 | 3 | 16 | 506 | 15 | 518 | 0.0 | 561 |
| MS.gene45542.t1 | AT1G51340 | 69.291 | 381 | 107 | 4 | 12 | 382 | 10 | 390 | 6.22e-168 | 480 |
| MS.gene45542.t1 | AT3G08040 | 59.158 | 404 | 154 | 2 | 103 | 506 | 22 | 414 | 2.58e-164 | 472 |
| MS.gene45542.t1 | AT4G38380 | 44.632 | 475 | 239 | 3 | 33 | 507 | 32 | 482 | 4.88e-128 | 382 |
| MS.gene45542.t1 | AT4G38380 | 44.632 | 475 | 239 | 3 | 33 | 507 | 104 | 554 | 1.16e-126 | 381 |
| MS.gene45542.t1 | AT4G38380 | 44.632 | 475 | 239 | 3 | 33 | 507 | 104 | 554 | 1.16e-126 | 381 |
| MS.gene45542.t1 | AT4G38380 | 44.754 | 467 | 234 | 3 | 41 | 507 | 2 | 444 | 1.20e-125 | 374 |
| MS.gene45542.t1 | AT4G38380 | 44.211 | 475 | 231 | 3 | 33 | 507 | 104 | 544 | 3.23e-125 | 377 |
| MS.gene45542.t1 | AT2G38330 | 44.654 | 477 | 230 | 2 | 31 | 507 | 73 | 515 | 5.72e-123 | 370 |
| MS.gene45542.t1 | AT2G21340 | 25.870 | 460 | 272 | 16 | 36 | 480 | 117 | 522 | 3.59e-17 | 84.7 |
| MS.gene45542.t1 | AT4G39030 | 24.788 | 472 | 289 | 16 | 36 | 494 | 100 | 518 | 1.44e-16 | 82.8 |
| MS.gene45542.t1 | AT2G21340 | 25.435 | 460 | 271 | 16 | 36 | 480 | 117 | 519 | 5.72e-16 | 81.3 |
Find 117 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGTGGATTCATTGGAATT+TGG | 0.174098 | 2.1:+6332388 | MS.gene45542:CDS |
| GCTTCGTCAGCGCTATATTT+TGG | 0.205113 | 2.1:+6330189 | MS.gene45542:CDS |
| ACGGCCTTCATTGGCCAATT+AGG | 0.238684 | 2.1:+6329435 | MS.gene45542:CDS |
| ATGCAGATGGGCGTGGTTCT+TGG | 0.286776 | 2.1:+6331660 | MS.gene45542:intron |
| GCTGATGGTCTGGCTGTTGC+CGG | 0.287735 | 2.1:+6331360 | MS.gene45542:CDS |
| TATTTGATGGTGTCAACTTT+GGG | 0.292922 | 2.1:+6331924 | MS.gene45542:CDS |
| TGGTTTCAGGCGATTCTTGC+AGG | 0.293939 | 2.1:+6331459 | MS.gene45542:intron |
| TTCAAGTCTGTCTGCAGGTT+TGG | 0.305191 | 2.1:+6331319 | MS.gene45542:CDS |
| TTGGCACTTGCATTCATTCT+TGG | 0.305585 | 2.1:+6331684 | MS.gene45542:CDS |
| AACATGATAACATACCTAAT+TGG | 0.313690 | 2.1:-6329449 | None:intergenic |
| AATTTCAAGTACTGCATTGC+AGG | 0.318886 | 2.1:-6330455 | None:intergenic |
| TGGTGGATTCATTGGAATTT+GGG | 0.325300 | 2.1:+6332389 | MS.gene45542:CDS |
| TGTTTGGCCTTTGTATTTGA+TGG | 0.334770 | 2.1:+6331911 | MS.gene45542:CDS |
| AAAACCTTTATTGAACTTCA+TGG | 0.337472 | 2.1:+6330257 | MS.gene45542:CDS |
| ACCAATTTGCACTTTCTTCA+AGG | 0.341571 | 2.1:+6329074 | MS.gene45542:CDS |
| ATACAAAGGCCAAACAGTTC+AGG | 0.350521 | 2.1:-6331904 | None:intergenic |
| AACTCTTTGGTTTCAGCATC+CGG | 0.351723 | 2.1:-6329982 | None:intergenic |
| AACTGCTACCCGAGTATTGC+AGG | 0.367216 | 2.1:+6331518 | MS.gene45542:CDS |
| GTCTCTTCTTGCTGATGGTC+TGG | 0.370175 | 2.1:+6331350 | MS.gene45542:CDS |
| TGAAAGCTTTAATGTAGTTA+AGG | 0.371698 | 2.1:+6330134 | MS.gene45542:CDS |
| TCATCTGCTGGTGGATTCAT+TGG | 0.373915 | 2.1:+6332381 | MS.gene45542:CDS |
| GCCCGCTGCAATGGCTTTGA+CGG | 0.379476 | 2.1:+6329386 | MS.gene45542:CDS |
| CTTGCATTCATTCTTGGAAC+AGG | 0.384448 | 2.1:+6331690 | MS.gene45542:CDS |
| ACTCCCATGAAGTTCAATAA+AGG | 0.391036 | 2.1:-6330261 | None:intergenic |
| GTATTTAAATTAGACGATCT+TGG | 0.391627 | 2.1:+6329339 | MS.gene45542:CDS |
| TACATACCAGTGGCATATAA+AGG | 0.392262 | 2.1:-6330557 | None:intergenic |
| CAGAAATAAGCAACGTTGCC+TGG | 0.395145 | 2.1:-6330230 | None:intergenic |
| TCTTCTTTCATTAGCGATGC+AGG | 0.402072 | 2.1:+6330502 | MS.gene45542:CDS |
| CTGTGAGCTTGCGTCGCTTA+AGG | 0.406638 | 2.1:-6329923 | None:intergenic |
| TGGTCTGGCTGTTGCCGGGC+AGG | 0.408507 | 2.1:+6331365 | MS.gene45542:CDS |
| TCCTACACCTCATTAGAGTT+GGG | 0.408785 | 2.1:+6331754 | MS.gene45542:CDS |
| TCTTCATTCTCAGGTTATAG+TGG | 0.409610 | 2.1:+6332326 | MS.gene45542:intron |
| TCCTTGAAGAAAGTGCAAAT+TGG | 0.409766 | 2.1:-6329075 | None:intergenic |
| GTATTTGATGGTGTCAACTT+TGG | 0.411044 | 2.1:+6331923 | MS.gene45542:CDS |
| TGCAGGATTGGAACTGGATC+AGG | 0.411830 | 2.1:+6332576 | MS.gene45542:intron |
| TGCATTTCAAGTCTGTCTGC+AGG | 0.423557 | 2.1:+6331314 | MS.gene45542:CDS |
| CACTCAACCCCTGAACTGTT+TGG | 0.424826 | 2.1:+6331895 | MS.gene45542:CDS |
| TTGGTCGATACGGCCTTCAT+TGG | 0.428017 | 2.1:+6329426 | MS.gene45542:CDS |
| TTTCTGCGGTAAGAACTCTT+TGG | 0.430202 | 2.1:-6329995 | None:intergenic |
| CATTAATGCAGGATTGGAAC+TGG | 0.434368 | 2.1:+6332570 | MS.gene45542:intron |
| AATTGCTTTGCCCGCTGCAA+TGG | 0.438261 | 2.1:+6329377 | MS.gene45542:CDS |
| GCAGTGTCTCTTCTTGCTGA+TGG | 0.438785 | 2.1:+6331345 | MS.gene45542:CDS |
| CGACGCAAGCTCACAGGTAG+AGG | 0.442007 | 2.1:+6329930 | MS.gene45542:CDS |
| GCCGTCAAAGCCATTGCAGC+GGG | 0.444777 | 2.1:-6329387 | None:intergenic |
| ATGAGTCTAAGAGCATTTGC+TGG | 0.445196 | 2.1:+6332429 | MS.gene45542:CDS |
| CTTGGAACAGGATTGCACTT+TGG | 0.450496 | 2.1:+6331702 | MS.gene45542:CDS |
| TACTTGAAATTGAGATCTCT+TGG | 0.450593 | 2.1:+6330467 | MS.gene45542:CDS |
| CAGGACCATGGGAATTCCTT+AGG | 0.451204 | 2.1:+6332595 | MS.gene45542:CDS |
| GGCTGATCCTATAGCATCAT+TGG | 0.454668 | 2.1:+6329407 | MS.gene45542:CDS |
| CTTGGAAGCTGCGACACCTC+CGG | 0.465998 | 2.1:+6329963 | MS.gene45542:CDS |
| AATTGCAGATGTTTGATGCT+TGG | 0.468820 | 2.1:-6330955 | None:intergenic |
| CTGATGGTCTGGCTGTTGCC+GGG | 0.474901 | 2.1:+6331361 | MS.gene45542:CDS |
| TTTAATGTAGTTAAGGATGA+TGG | 0.476777 | 2.1:+6330141 | MS.gene45542:CDS |
| TGCAGGTGCATTTGCTAACA+AGG | 0.477862 | 2.1:+6331476 | MS.gene45542:CDS |
| TACAAAGGCCAAACAGTTCA+GGG | 0.478905 | 2.1:-6331903 | None:intergenic |
| AAACCTTTATTGAACTTCAT+GGG | 0.481789 | 2.1:+6330258 | MS.gene45542:CDS |
| GCACTTTCTTCAAGGATGCT+AGG | 0.484597 | 2.1:+6329082 | MS.gene45542:CDS |
| CCTACTGCAGCAAGCTCCAC+TGG | 0.487433 | 2.1:-6329811 | None:intergenic |
| GTATCGACCAATGATGCTAT+AGG | 0.489373 | 2.1:-6329414 | None:intergenic |
| GTCCTACACCTCATTAGAGT+TGG | 0.498396 | 2.1:+6331753 | MS.gene45542:CDS |
| TGCTAACAAGGACTATGAAA+AGG | 0.500938 | 2.1:+6331488 | MS.gene45542:CDS |
| AGTCTGTCTGCAGGTTTGGT+TGG | 0.501509 | 2.1:+6331323 | MS.gene45542:CDS |
| GCTAGTGCAGTTAGCTCCTA+AGG | 0.501755 | 2.1:-6332611 | None:intergenic |
| CTTGTTTGTTCAAACTCCAC+AGG | 0.509281 | 2.1:-6330918 | None:intergenic |
| GATGGGCGTGGTTCTTGGAT+TGG | 0.512180 | 2.1:+6331665 | MS.gene45542:intron |
| CATACCTAATTGGCCAATGA+AGG | 0.513148 | 2.1:-6329439 | None:intergenic |
| CCTCATTAGAGTTGGGGTCC+CGG | 0.519902 | 2.1:+6331761 | MS.gene45542:CDS |
| CCAGTGGAGCTTGCTGCAGT+AGG | 0.523504 | 2.1:+6329811 | MS.gene45542:CDS |
| AGCTCACAGGTAGAGGAGAA+TGG | 0.528973 | 2.1:+6329937 | MS.gene45542:CDS |
| TGTAGAACACCTGCAATACT+CGG | 0.533112 | 2.1:-6331527 | None:intergenic |
| CTTAAGCGACGCAAGCTCAC+AGG | 0.533775 | 2.1:+6329924 | MS.gene45542:CDS |
| CTTCTTTCATTAGCGATGCA+GGG | 0.537717 | 2.1:+6330503 | MS.gene45542:CDS |
| TGCAGATGTTTGATGCTTGG+AGG | 0.538167 | 2.1:-6330952 | None:intergenic |
| TAATATAATGCAGATGGGCG+TGG | 0.542994 | 2.1:+6331653 | MS.gene45542:intron |
| GGTAGAGGAGAATGGATGCT+TGG | 0.544369 | 2.1:+6329945 | MS.gene45542:CDS |
| TATAGCATCATTGGTCGATA+CGG | 0.544448 | 2.1:+6329416 | MS.gene45542:CDS |
| AAAACTCCTTTATATGCCAC+TGG | 0.548051 | 2.1:+6330551 | MS.gene45542:CDS |
| ACGTTGCCTGGACGAGGCCA+AGG | 0.550365 | 2.1:-6330218 | None:intergenic |
| AGGTATCCTTGGCCTCGTCC+AGG | 0.551223 | 2.1:+6330212 | MS.gene45542:CDS |
| GTATTCCGCATGGGTGTCAA+CGG | 0.551236 | 2.1:+6330697 | MS.gene45542:CDS |
| GAGCATTTGCTGGCTTCTTG+AGG | 0.554417 | 2.1:+6332439 | MS.gene45542:CDS |
| CTCTATTCAATCAAGCATCA+AGG | 0.567403 | 2.1:+6329845 | MS.gene45542:CDS |
| TGCTTGATTGAATAGAGCTA+TGG | 0.567545 | 2.1:-6329839 | None:intergenic |
| GGTAACATTCTGCGTGACAC+TGG | 0.567656 | 2.1:+6331251 | MS.gene45542:CDS |
| GAGATCTCTTGGTGCTCCTG+CGG | 0.568151 | 2.1:+6330478 | MS.gene45542:CDS |
| TGCATATTCAGCCTTCTCCA+TGG | 0.574962 | 2.1:+6331958 | MS.gene45542:CDS |
| TTGGAACTGGATCAGGACCA+TGG | 0.582445 | 2.1:+6332583 | MS.gene45542:CDS |
| TAAGCAACGTTGCCTGGACG+AGG | 0.584099 | 2.1:-6330224 | None:intergenic |
| TGAATCATATCTCACCTGCC+CGG | 0.590246 | 2.1:-6331379 | None:intergenic |
| TGGAACTGGATCAGGACCAT+GGG | 0.597595 | 2.1:+6332584 | MS.gene45542:CDS |
| GAAGTTACATACCATGGAGA+AGG | 0.599442 | 2.1:-6331969 | None:intergenic |
| ACAGACTTGAAATGCAGCCA+TGG | 0.602463 | 2.1:-6331307 | None:intergenic |
| ATTTGATGGTGTCAACTTTG+GGG | 0.602557 | 2.1:+6331925 | MS.gene45542:CDS |
| CCGGGACCCCAACTCTAATG+AGG | 0.604305 | 2.1:-6331761 | None:intergenic |
| TACTTTCAGCTATACTCCTG+TGG | 0.608095 | 2.1:+6330902 | MS.gene45542:CDS |
| TACTCGGGTAGCAGTTGTTG+AGG | 0.609106 | 2.1:-6331511 | None:intergenic |
| TGCATTGCAGGATGTAGCAT+AGG | 0.609472 | 2.1:-6330443 | None:intergenic |
| GAAGTTGTGACACTGACTAG+TGG | 0.610876 | 2.1:-6329880 | None:intergenic |
| GCTAATGAAAGAAGAACCGC+AGG | 0.618157 | 2.1:-6330494 | None:intergenic |
| ATTGGTCTCTACAGGTCCAG+TGG | 0.619428 | 2.1:+6329795 | MS.gene45542:intron |
| GTAGAACACCTGCAATACTC+GGG | 0.620615 | 2.1:-6331526 | None:intergenic |
| AGGATGATGGACGTAAGAGA+AGG | 0.620851 | 2.1:+6330154 | MS.gene45542:CDS |
| AAGTTGTGACACTGACTAGT+GGG | 0.626798 | 2.1:-6329879 | None:intergenic |
| CCCCAACTCTAATGAGGTGT+AGG | 0.629440 | 2.1:-6331755 | None:intergenic |
| AGCCGTCAAAGCCATTGCAG+CGG | 0.630911 | 2.1:-6329388 | None:intergenic |
| ATTATTCATGAGAGTCATTG+CGG | 0.631200 | 2.1:+6331230 | MS.gene45542:CDS |
| ACACCACGGATCAACATCCA+TGG | 0.637699 | 2.1:+6331290 | MS.gene45542:CDS |
| CTGAGATATAACATGTGCAA+TGG | 0.641731 | 2.1:-6330725 | None:intergenic |
| CCTACACCTCATTAGAGTTG+GGG | 0.644035 | 2.1:+6331755 | MS.gene45542:CDS |
| GTTGACACCATCAAATACAA+AGG | 0.646571 | 2.1:-6331918 | None:intergenic |
| TATAGCGCTGACGAAGCTGA+AGG | 0.652574 | 2.1:-6330183 | None:intergenic |
| TCTTTGGTTTCAGCATCCGG+AGG | 0.669170 | 2.1:-6329979 | None:intergenic |
| TAGCTCCTAAGGAATTCCCA+TGG | 0.677278 | 2.1:-6332600 | None:intergenic |
| ACAAAGGCCAAACAGTTCAG+GGG | 0.700393 | 2.1:-6331902 | None:intergenic |
| GCATCATTAGCTGCACACCA+CGG | 0.714665 | 2.1:+6331276 | MS.gene45542:CDS |
| CAGCCATGGATGTTGATCCG+TGG | 0.715332 | 2.1:-6331293 | None:intergenic |
| CTGCACCGTTGACACCCATG+CGG | 0.715966 | 2.1:-6330702 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATGAACTAAAAATATG+AGG | - | chr2.1:6329234-6329253 | None:intergenic | 15.0% |
| !! | AATTATAATATAATGCAGAT+GGG | + | chr2.1:6331648-6331667 | MS.gene45542:intron | 15.0% |
| !! | GTTTAATGATTTAGAAATTT+AGG | + | chr2.1:6329152-6329171 | MS.gene45542:intron | 15.0% |
| !! | TAATTATAATATAATGCAGA+TGG | + | chr2.1:6331647-6331666 | MS.gene45542:intron | 15.0% |
| !! | TATAGTTTAATACAGATTTA+AGG | + | chr2.1:6330782-6330801 | MS.gene45542:intron | 15.0% |
| !! | TTAAAGTTTATACACAAATT+TGG | + | chr2.1:6331105-6331124 | MS.gene45542:intron | 15.0% |
| !!! | ACTTAATTACATTGATTATT+TGG | - | chr2.1:6329727-6329746 | None:intergenic | 15.0% |
| !! | AAAAATATATTGCTAACTAG+AGG | - | chr2.1:6329186-6329205 | None:intergenic | 20.0% |
| !! | AAAATATGAATAGAGCTATA+GGG | + | chr2.1:6329659-6329678 | MS.gene45542:intron | 20.0% |
| !! | AATTTATTCGTGTTCAAATT+TGG | + | chr2.1:6331785-6331804 | MS.gene45542:intron | 20.0% |
| !! | ACGATGATTGAAAAATAATA+TGG | + | chr2.1:6330401-6330420 | MS.gene45542:intron | 20.0% |
| !! | AGAACATGAAATAAAACATT+AGG | - | chr2.1:6332490-6332509 | None:intergenic | 20.0% |
| !!! | ATAATATGGATTATTTGTAC+AGG | + | chr2.1:6330415-6330434 | MS.gene45542:intron | 20.0% |
| !!! | CTAGTTAGCAATATATTTTT+AGG | + | chr2.1:6329186-6329205 | MS.gene45542:intron | 20.0% |
| !!! | TTTCAATGATTCTTTAAGAT+TGG | - | chr2.1:6332066-6332085 | None:intergenic | 20.0% |
| ! | AAAACCTTTATTGAACTTCA+TGG | + | chr2.1:6330257-6330276 | MS.gene45542:CDS | 25.0% |
| ! | AAACCTTTATTGAACTTCAT+GGG | + | chr2.1:6330258-6330277 | MS.gene45542:CDS | 25.0% |
| ! | AACATGATAACATACCTAAT+TGG | - | chr2.1:6329452-6329471 | None:intergenic | 25.0% |
| ! | ATTAAAATATAGACTCACCA+TGG | - | chr2.1:6332038-6332057 | None:intergenic | 25.0% |
| ! | CAAAATCAAATAGAAGCAAA+AGG | - | chr2.1:6330843-6330862 | None:intergenic | 25.0% |
| ! | CACGATAATTGAAAAAATTG+TGG | - | chr2.1:6329133-6329152 | None:intergenic | 25.0% |
| ! | GAAAATATGAATAGAGCTAT+AGG | + | chr2.1:6329658-6329677 | MS.gene45542:intron | 25.0% |
| ! | GATAATTGAAAAAATTGTGG+AGG | - | chr2.1:6329130-6329149 | None:intergenic | 25.0% |
| ! | GTATTTAAATTAGACGATCT+TGG | + | chr2.1:6329339-6329358 | MS.gene45542:CDS | 25.0% |
| ! | GTTTATAGTCCTTGTTAAAA+AGG | - | chr2.1:6331575-6331594 | None:intergenic | 25.0% |
| ! | TTCAAATTAACTGTAAATGC+AGG | + | chr2.1:6330875-6330894 | MS.gene45542:intron | 25.0% |
| ! | TTTAATGTAGTTAAGGATGA+TGG | + | chr2.1:6330141-6330160 | MS.gene45542:CDS | 25.0% |
| ! | TTTCATAATTCCATGTACTT+AGG | + | chr2.1:6329283-6329302 | MS.gene45542:intron | 25.0% |
| ! | TTTGAACACGAATAAATTAC+CGG | - | chr2.1:6331783-6331802 | None:intergenic | 25.0% |
| !! | ATATCTCAGTATGTTTTACT+TGG | + | chr2.1:6330739-6330758 | MS.gene45542:intron | 25.0% |
| !! | TAGTAATCAGGAAATTTTCT+TGG | - | chr2.1:6330078-6330097 | None:intergenic | 25.0% |
| !! | TGAAAGCTTTAATGTAGTTA+AGG | + | chr2.1:6330134-6330153 | MS.gene45542:CDS | 25.0% |
| !! | TTATAAACCCTTACCATTTT+TGG | - | chr2.1:6330992-6331011 | None:intergenic | 25.0% |
| !!! | AAAGAGAGTTTGTTTTCTAT+AGG | + | chr2.1:6329036-6329055 | MS.gene45542:CDS | 25.0% |
| !!! | AACCAAGATGATGTTTTTTT+CGG | - | chr2.1:6331444-6331463 | None:intergenic | 25.0% |
| AAAAACATCATCTTGGTTTC+AGG | + | chr2.1:6331446-6331465 | MS.gene45542:intron | 30.0% | |
| AAAACATTGTAGCAAGAGTT+TGG | - | chr2.1:6332245-6332264 | None:intergenic | 30.0% | |
| AAACCATTTCGTAGACAATA+AGG | - | chr2.1:6331016-6331035 | None:intergenic | 30.0% | |
| AAGAGTTAAACCTAAGTACA+TGG | - | chr2.1:6329296-6329315 | None:intergenic | 30.0% | |
| AATCCTTATTGTCTACGAAA+TGG | + | chr2.1:6331010-6331029 | MS.gene45542:intron | 30.0% | |
| ACATTACGAGACTTACTTAT+AGG | + | chr2.1:6330309-6330328 | MS.gene45542:intron | 30.0% | |
| ACATTCGTATGTTAGTAATC+AGG | - | chr2.1:6330090-6330109 | None:intergenic | 30.0% | |
| AGGAAATTAAGAGACAAGAT+AGG | - | chr2.1:6330823-6330842 | None:intergenic | 30.0% | |
| ATGAAGTTAATGACGATTAG+TGG | + | chr2.1:6332284-6332303 | MS.gene45542:intron | 30.0% | |
| ATGACAATAATGAAATGGGA+AGG | - | chr2.1:6331199-6331218 | None:intergenic | 30.0% | |
| ATTATTCATGAGAGTCATTG+CGG | + | chr2.1:6331230-6331249 | MS.gene45542:CDS | 30.0% | |
| ATTCGTGTTCAAATTTGGAA+AGG | + | chr2.1:6331790-6331809 | MS.gene45542:intron | 30.0% | |
| CGGAATACAAAAATGAAAAG+CGG | - | chr2.1:6330685-6330704 | None:intergenic | 30.0% | |
| CTGCATGACAATAATGAAAT+GGG | - | chr2.1:6331203-6331222 | None:intergenic | 30.0% | |
| GAAAAAATTGTGGAGGAAAT+AGG | - | chr2.1:6329123-6329142 | None:intergenic | 30.0% | |
| GATCAAAGCAGATTAAAACA+TGG | - | chr2.1:6331997-6332016 | None:intergenic | 30.0% | |
| TACTTGAAATTGAGATCTCT+TGG | + | chr2.1:6330467-6330486 | MS.gene45542:CDS | 30.0% | |
| TCAAAATGTTGCAATTGTCT+TGG | - | chr2.1:6332525-6332544 | None:intergenic | 30.0% | |
| TCAATGAACTACATTAATGC+AGG | + | chr2.1:6332559-6332578 | MS.gene45542:intron | 30.0% | |
| TCTTGCTCTACTAATTTGAA+CGG | - | chr2.1:6329553-6329572 | None:intergenic | 30.0% | |
| TTCCGAAAAAAACATCATCT+TGG | + | chr2.1:6331439-6331458 | MS.gene45542:intron | 30.0% | |
| TTGAACACGAATAAATTACC+GGG | - | chr2.1:6331782-6331801 | None:intergenic | 30.0% | |
| ! | TCAGCAGAGATATATTTTCT+GGG | + | chr2.1:6331051-6331070 | MS.gene45542:intron | 30.0% |
| ! | TTCAGCAGAGATATATTTTC+TGG | + | chr2.1:6331050-6331069 | MS.gene45542:intron | 30.0% |
| !! | ATATGTTTGTTGTAATCCAG+TGG | + | chr2.1:6330630-6330649 | MS.gene45542:intron | 30.0% |
| !! | ATTACCGATTTGAACGAAAA+AGG | - | chr2.1:6331164-6331183 | None:intergenic | 30.0% |
| !! | CAACAAGTGTTGGATATTAT+TGG | + | chr2.1:6329777-6329796 | MS.gene45542:intron | 30.0% |
| !! | GTTTGTTTTCTATAGGTGAT+TGG | + | chr2.1:6329043-6329062 | MS.gene45542:CDS | 30.0% |
| !! | TATTTGATGGTGTCAACTTT+GGG | + | chr2.1:6331924-6331943 | MS.gene45542:CDS | 30.0% |
| !! | TTCATTTTTGTATTCCGCAT+GGG | + | chr2.1:6330688-6330707 | MS.gene45542:CDS | 30.0% |
| !! | TTTCATTTTTGTATTCCGCA+TGG | + | chr2.1:6330687-6330706 | MS.gene45542:CDS | 30.0% |
| !!! | CATTATTTTAAGAAGATCGC+TGG | + | chr2.1:6331548-6331567 | MS.gene45542:intron | 30.0% |
| !!! | CTTCTATCCATTTTTTGAGT+CGG | - | chr2.1:6329700-6329719 | None:intergenic | 30.0% |
| AAAACTCCTTTATATGCCAC+TGG | + | chr2.1:6330551-6330570 | MS.gene45542:CDS | 35.0% | |
| AATTGCAGATGTTTGATGCT+TGG | - | chr2.1:6330958-6330977 | None:intergenic | 35.0% | |
| ACCAATTTGCACTTTCTTCA+AGG | + | chr2.1:6329074-6329093 | MS.gene45542:CDS | 35.0% | |
| ACTCCCATGAAGTTCAATAA+AGG | - | chr2.1:6330264-6330283 | None:intergenic | 35.0% | |
| ATGGATGAAGTTACATACCA+TGG | - | chr2.1:6331978-6331997 | None:intergenic | 35.0% | |
| CCATTTCATTATTGTCATGC+AGG | + | chr2.1:6331201-6331220 | MS.gene45542:intron | 35.0% | |
| CCTGCATGACAATAATGAAA+TGG | - | chr2.1:6331204-6331223 | None:intergenic | 35.0% | |
| CGATTTGCCAAAAATGGTAA+GGG | + | chr2.1:6330982-6331001 | MS.gene45542:intron | 35.0% | |
| CTATCAGGAAAGTAGAAGAA+TGG | - | chr2.1:6330025-6330044 | None:intergenic | 35.0% | |
| CTCTATTCAATCAAGCATCA+AGG | + | chr2.1:6329845-6329864 | MS.gene45542:CDS | 35.0% | |
| CTGAGATATAACATGTGCAA+TGG | - | chr2.1:6330728-6330747 | None:intergenic | 35.0% | |
| GAACTACATTAATGCAGGAT+TGG | + | chr2.1:6332564-6332583 | MS.gene45542:intron | 35.0% | |
| GGAGGAAATAGGACAAAAAA+TGG | - | chr2.1:6329112-6329131 | None:intergenic | 35.0% | |
| GGTCGAATCATTAAAGATGT+AGG | - | chr2.1:6330369-6330388 | None:intergenic | 35.0% | |
| GTTGACACCATCAAATACAA+AGG | - | chr2.1:6331921-6331940 | None:intergenic | 35.0% | |
| TACATACCAGTGGCATATAA+AGG | - | chr2.1:6330560-6330579 | None:intergenic | 35.0% | |
| TATAGCATCATTGGTCGATA+CGG | + | chr2.1:6329416-6329435 | MS.gene45542:CDS | 35.0% | |
| TCATGTCATTCTTCATTCTC+AGG | + | chr2.1:6332317-6332336 | MS.gene45542:intron | 35.0% | |
| TCTTCATTCTCAGGTTATAG+TGG | + | chr2.1:6332326-6332345 | MS.gene45542:intron | 35.0% | |
| TGCTAACAAGGACTATGAAA+AGG | + | chr2.1:6331488-6331507 | MS.gene45542:CDS | 35.0% | |
| TGCTTGATTGAATAGAGCTA+TGG | - | chr2.1:6329842-6329861 | None:intergenic | 35.0% | |
| TGTTATAACGCAACAAGTGT+TGG | + | chr2.1:6329767-6329786 | MS.gene45542:intron | 35.0% | |
| TGTTGATCCGACTCAAAAAA+TGG | + | chr2.1:6329690-6329709 | MS.gene45542:intron | 35.0% | |
| TGTTTGTGTTAGCGCTTTAT+AGG | + | chr2.1:6332210-6332229 | MS.gene45542:intron | 35.0% | |
| TTAATGATTCGACCTCGTAT+CGG | + | chr2.1:6330375-6330394 | MS.gene45542:intron | 35.0% | |
| TTCAAAAAGCAATTAGCGAG+CGG | - | chr2.1:6331599-6331618 | None:intergenic | 35.0% | |
| ! | AATACTAGTCTGCAGTAAGA+AGG | - | chr2.1:6329324-6329343 | None:intergenic | 35.0% |
| ! | AATTTCAAGTACTGCATTGC+AGG | - | chr2.1:6330458-6330477 | None:intergenic | 35.0% |
| ! | AGAAGAATGGTACTTTTCTG+CGG | - | chr2.1:6330012-6330031 | None:intergenic | 35.0% |
| ! | CAGCAGAGATATATTTTCTG+GGG | + | chr2.1:6331052-6331071 | MS.gene45542:intron | 35.0% |
| ! | TCCTTGAAGAAAGTGCAAAT+TGG | - | chr2.1:6329078-6329097 | None:intergenic | 35.0% |
| ! | TCGATTTGCCAAAAATGGTA+AGG | + | chr2.1:6330981-6331000 | MS.gene45542:intron | 35.0% |
| ! | TGGATATTATTGGTCTCTAC+AGG | + | chr2.1:6329787-6329806 | MS.gene45542:intron | 35.0% |
| ! | TGTGTTGACAAACTCAGATT+CGG | + | chr2.1:6330107-6330126 | MS.gene45542:intron | 35.0% |
| ! | TGTTTGGCCTTTGTATTTGA+TGG | + | chr2.1:6331911-6331930 | MS.gene45542:CDS | 35.0% |
| !! | ATTTGATGGTGTCAACTTTG+GGG | + | chr2.1:6331925-6331944 | MS.gene45542:CDS | 35.0% |
| !! | CACTCCTTTTTCGTTCAAAT+CGG | + | chr2.1:6331157-6331176 | MS.gene45542:intron | 35.0% |
| !! | GTATTTGATGGTGTCAACTT+TGG | + | chr2.1:6331923-6331942 | MS.gene45542:CDS | 35.0% |
| !! | TGGTGGATTCATTGGAATTT+GGG | + | chr2.1:6332389-6332408 | MS.gene45542:CDS | 35.0% |
| !! | TTCGATCGATTTGCCAAAAA+TGG | + | chr2.1:6330976-6330995 | MS.gene45542:CDS | 35.0% |
| !! | TTTATTTTCAGCCTTCTCCA+TGG | + | chr2.1:6332018-6332037 | MS.gene45542:intron | 35.0% |
| !!! | CTACTTATTTTGTCATCTGC+TGG | + | chr2.1:6332369-6332388 | MS.gene45542:CDS | 35.0% |
| !!! | CTATATTTTGGAGGTATCCT+TGG | + | chr2.1:6330201-6330220 | MS.gene45542:CDS | 35.0% |
| ATACAAAGGCCAAACAGTTC+AGG | - | chr2.1:6331907-6331926 | None:intergenic | 40.0% | |
| ATATAGACTCACCATGGAGA+AGG | - | chr2.1:6332032-6332051 | None:intergenic | 40.0% | |
| CATACCTAATTGGCCAATGA+AGG | - | chr2.1:6329442-6329461 | None:intergenic | 40.0% | |
| CATTAATGCAGGATTGGAAC+TGG | + | chr2.1:6332570-6332589 | MS.gene45542:intron | 40.0% | |
| CTCAAATCTTGTGCATGTGT+TGG | - | chr2.1:6329590-6329609 | None:intergenic | 40.0% | |
| CTTCTTTCATTAGCGATGCA+GGG | + | chr2.1:6330503-6330522 | MS.gene45542:CDS | 40.0% | |
| CTTGCATTCATTCTTGGAAC+AGG | + | chr2.1:6331690-6331709 | MS.gene45542:CDS | 40.0% | |
| CTTGTTTGTTCAAACTCCAC+AGG | - | chr2.1:6330921-6330940 | None:intergenic | 40.0% | |
| GAAGTTACATACCATGGAGA+AGG | - | chr2.1:6331972-6331991 | None:intergenic | 40.0% | |
| TAATATAATGCAGATGGGCG+TGG | + | chr2.1:6331653-6331672 | MS.gene45542:intron | 40.0% | |
| TACAAAGGCCAAACAGTTCA+GGG | - | chr2.1:6331906-6331925 | None:intergenic | 40.0% | |
| TACTTTCAGCTATACTCCTG+TGG | + | chr2.1:6330902-6330921 | MS.gene45542:CDS | 40.0% | |
| TATCCATTCACTTGTGAGAC+AGG | - | chr2.1:6329622-6329641 | None:intergenic | 40.0% | |
| TCCTACACCTCATTAGAGTT+GGG | + | chr2.1:6331754-6331773 | MS.gene45542:CDS | 40.0% | |
| TCTTCTTTCATTAGCGATGC+AGG | + | chr2.1:6330502-6330521 | MS.gene45542:CDS | 40.0% | |
| TGAACGAAAAAGGAGTGACA+TGG | - | chr2.1:6331154-6331173 | None:intergenic | 40.0% | |
| TGTAAGTTCCACTCTTTGAG+AGG | - | chr2.1:6331842-6331861 | None:intergenic | 40.0% | |
| TGTAGAACACCTGCAATACT+CGG | - | chr2.1:6331530-6331549 | None:intergenic | 40.0% | |
| TTGGCACTTGCATTCATTCT+TGG | + | chr2.1:6331684-6331703 | MS.gene45542:CDS | 40.0% | |
| TTTCTGCGGTAAGAACTCTT+TGG | - | chr2.1:6329998-6330017 | None:intergenic | 40.0% | |
| ! | AACTCTTTGGTTTCAGCATC+CGG | - | chr2.1:6329985-6330004 | None:intergenic | 40.0% |
| ! | AAGTTGTGACACTGACTAGT+GGG | - | chr2.1:6329882-6329901 | None:intergenic | 40.0% |
| ! | ATCGCTGGTCCTTTTTAACA+AGG | + | chr2.1:6331563-6331582 | MS.gene45542:intron | 40.0% |
| ! | CAGTGTCACAACTTCTTTTG+TGG | + | chr2.1:6329888-6329907 | MS.gene45542:CDS | 40.0% |
| ! | GTAAGTTCCACTCTTTGAGA+GGG | - | chr2.1:6331841-6331860 | None:intergenic | 40.0% |
| ! | GTATCGACCAATGATGCTAT+AGG | - | chr2.1:6329417-6329436 | None:intergenic | 40.0% |
| ! | TTTTCAACCCTCTCAAAGAG+TGG | + | chr2.1:6331831-6331850 | MS.gene45542:intron | 40.0% |
| !! | ATGAGTCTAAGAGCATTTGC+TGG | + | chr2.1:6332429-6332448 | MS.gene45542:CDS | 40.0% |
| !! | CTGGTGGATTCATTGGAATT+TGG | + | chr2.1:6332388-6332407 | MS.gene45542:CDS | 40.0% |
| !! | GCTATGTCTATCGACTTTCT+TGG | - | chr2.1:6329531-6329550 | None:intergenic | 40.0% |
| !!! | CTTATTTTGTCATCTGCTGG+TGG | + | chr2.1:6332372-6332391 | MS.gene45542:CDS | 40.0% |
| AAGCCTGTCTCACAAGTGAA+TGG | + | chr2.1:6329616-6329635 | MS.gene45542:intron | 45.0% | |
| ACAAAGGCCAAACAGTTCAG+GGG | - | chr2.1:6331905-6331924 | None:intergenic | 45.0% | |
| ACAGACTTGAAATGCAGCCA+TGG | - | chr2.1:6331310-6331329 | None:intergenic | 45.0% | |
| ACGAAAAAGGAGTGACATGG+AGG | - | chr2.1:6331151-6331170 | None:intergenic | 45.0% | |
| CAGAAATAAGCAACGTTGCC+TGG | - | chr2.1:6330233-6330252 | None:intergenic | 45.0% | |
| CCTACACCTCATTAGAGTTG+GGG | + | chr2.1:6331755-6331774 | MS.gene45542:CDS | 45.0% | |
| CTTGGAACAGGATTGCACTT+TGG | + | chr2.1:6331702-6331721 | MS.gene45542:CDS | 45.0% | |
| GCACTTTCTTCAAGGATGCT+AGG | + | chr2.1:6329082-6329101 | MS.gene45542:CDS | 45.0% | |
| GCTAACACAAACACAGACAC+TGG | - | chr2.1:6332203-6332222 | None:intergenic | 45.0% | |
| GCTAATGAAAGAAGAACCGC+AGG | - | chr2.1:6330497-6330516 | None:intergenic | 45.0% | |
| GGCTGATCCTATAGCATCAT+TGG | + | chr2.1:6329407-6329426 | MS.gene45542:CDS | 45.0% | |
| GTAGAACACCTGCAATACTC+GGG | - | chr2.1:6331529-6331548 | None:intergenic | 45.0% | |
| GTCCTACACCTCATTAGAGT+TGG | + | chr2.1:6331753-6331772 | MS.gene45542:CDS | 45.0% | |
| GTTGAGTGAGTGCTACAAAC+TGG | - | chr2.1:6331883-6331902 | None:intergenic | 45.0% | |
| TAGCTCCTAAGGAATTCCCA+TGG | - | chr2.1:6332603-6332622 | None:intergenic | 45.0% | |
| TGAATCATATCTCACCTGCC+CGG | - | chr2.1:6331382-6331401 | None:intergenic | 45.0% | |
| TGCAGATGTTTGATGCTTGG+AGG | - | chr2.1:6330955-6330974 | None:intergenic | 45.0% | |
| TGCATATTCAGCCTTCTCCA+TGG | + | chr2.1:6331958-6331977 | MS.gene45542:CDS | 45.0% | |
| TGCATTGCAGGATGTAGCAT+AGG | - | chr2.1:6330446-6330465 | None:intergenic | 45.0% | |
| TTCAAGTCTGTCTGCAGGTT+TGG | + | chr2.1:6331319-6331338 | MS.gene45542:CDS | 45.0% | |
| ! | CACAACTTCTTTTGTGGCTG+AGG | + | chr2.1:6329894-6329913 | MS.gene45542:CDS | 45.0% |
| ! | GAAGTTGTGACACTGACTAG+TGG | - | chr2.1:6329883-6329902 | None:intergenic | 45.0% |
| ! | GCTTCGTCAGCGCTATATTT+TGG | + | chr2.1:6330189-6330208 | MS.gene45542:CDS | 45.0% |
| ! | GGTTTTCCTGTTGCGAAACA+AGG | - | chr2.1:6330057-6330076 | None:intergenic | 45.0% |
| ! | TGCAGGTGCATTTGCTAACA+AGG | + | chr2.1:6331476-6331495 | MS.gene45542:CDS | 45.0% |
| ! | TGCATTTCAAGTCTGTCTGC+AGG | + | chr2.1:6331314-6331333 | MS.gene45542:CDS | 45.0% |
| !! | AGGATGATGGACGTAAGAGA+AGG | + | chr2.1:6330154-6330173 | MS.gene45542:CDS | 45.0% |
| !! | GTTTGTTGTAATCCAGTGGC+AGG | + | chr2.1:6330634-6330653 | MS.gene45542:intron | 45.0% |
| !! | TCATCTGCTGGTGGATTCAT+TGG | + | chr2.1:6332381-6332400 | MS.gene45542:CDS | 45.0% |
| !! | TCGTCAGCGCTATATTTTGG+AGG | + | chr2.1:6330192-6330211 | MS.gene45542:CDS | 45.0% |
| AATTGCTTTGCCCGCTGCAA+TGG | + | chr2.1:6329377-6329396 | MS.gene45542:CDS | 50.0% | |
| ACAAGGCTTGGCAGACTATC+AGG | - | chr2.1:6330040-6330059 | None:intergenic | 50.0% | |
| ACACCACGGATCAACATCCA+TGG | + | chr2.1:6331290-6331309 | MS.gene45542:CDS | 50.0% | |
| ACGGCCTTCATTGGCCAATT+AGG | + | chr2.1:6329435-6329454 | MS.gene45542:CDS | 50.0% | |
| AGCTCACAGGTAGAGGAGAA+TGG | + | chr2.1:6329937-6329956 | MS.gene45542:CDS | 50.0% | |
| CACTCAACCCCTGAACTGTT+TGG | + | chr2.1:6331895-6331914 | MS.gene45542:CDS | 50.0% | |
| CAGGACCATGGGAATTCCTT+AGG | + | chr2.1:6332595-6332614 | MS.gene45542:CDS | 50.0% | |
| CCCCAACTCTAATGAGGTGT+AGG | - | chr2.1:6331758-6331777 | None:intergenic | 50.0% | |
| GCAGTGTCTCTTCTTGCTGA+TGG | + | chr2.1:6331345-6331364 | MS.gene45542:CDS | 50.0% | |
| GCATCATTAGCTGCACACCA+CGG | + | chr2.1:6331276-6331295 | MS.gene45542:CDS | 50.0% | |
| GGTAACATTCTGCGTGACAC+TGG | + | chr2.1:6331251-6331270 | MS.gene45542:CDS | 50.0% | |
| GGTAGAGGAGAATGGATGCT+TGG | + | chr2.1:6329945-6329964 | MS.gene45542:CDS | 50.0% | |
| GTATTCCGCATGGGTGTCAA+CGG | + | chr2.1:6330697-6330716 | MS.gene45542:CDS | 50.0% | |
| GTCTCTTCTTGCTGATGGTC+TGG | + | chr2.1:6331350-6331369 | MS.gene45542:CDS | 50.0% | |
| TACTCGGGTAGCAGTTGTTG+AGG | - | chr2.1:6331514-6331533 | None:intergenic | 50.0% | |
| TCCTGTTGCGAAACAAGGCT+TGG | - | chr2.1:6330052-6330071 | None:intergenic | 50.0% | |
| TGCAGGATTGGAACTGGATC+AGG | + | chr2.1:6332576-6332595 | MS.gene45542:intron | 50.0% | |
| TGGAACTGGATCAGGACCAT+GGG | + | chr2.1:6332584-6332603 | MS.gene45542:CDS | 50.0% | |
| TGGTTTCAGGCGATTCTTGC+AGG | + | chr2.1:6331459-6331478 | MS.gene45542:intron | 50.0% | |
| TGTCGACGCATACATACCAG+TGG | - | chr2.1:6330570-6330589 | None:intergenic | 50.0% | |
| TTCGTCAAATCTCCTGCCAC+TGG | - | chr2.1:6330649-6330668 | None:intergenic | 50.0% | |
| TTGGAACTGGATCAGGACCA+TGG | + | chr2.1:6332583-6332602 | MS.gene45542:CDS | 50.0% | |
| TTGGTCGATACGGCCTTCAT+TGG | + | chr2.1:6329426-6329445 | MS.gene45542:CDS | 50.0% | |
| ! | AACTGCTACCCGAGTATTGC+AGG | + | chr2.1:6331518-6331537 | MS.gene45542:CDS | 50.0% |
| ! | AATCATCGTGTGCCGATACG+AGG | - | chr2.1:6330390-6330409 | None:intergenic | 50.0% |
| ! | AGTCTGTCTGCAGGTTTGGT+TGG | + | chr2.1:6331323-6331342 | MS.gene45542:CDS | 50.0% |
| ! | ATTGGTCTCTACAGGTCCAG+TGG | + | chr2.1:6329795-6329814 | MS.gene45542:intron | 50.0% |
| ! | TCTTTGGTTTCAGCATCCGG+AGG | - | chr2.1:6329982-6330001 | None:intergenic | 50.0% |
| !! | GAGCATTTGCTGGCTTCTTG+AGG | + | chr2.1:6332439-6332458 | MS.gene45542:CDS | 50.0% |
| !! | TATAGCGCTGACGAAGCTGA+AGG | - | chr2.1:6330186-6330205 | None:intergenic | 50.0% |
| AGCCGTCAAAGCCATTGCAG+CGG | - | chr2.1:6329391-6329410 | None:intergenic | 55.0% | |
| ATGCAGATGGGCGTGGTTCT+TGG | + | chr2.1:6331660-6331679 | MS.gene45542:intron | 55.0% | |
| CAGCCATGGATGTTGATCCG+TGG | - | chr2.1:6331296-6331315 | None:intergenic | 55.0% | |
| CCTCATTAGAGTTGGGGTCC+CGG | + | chr2.1:6331761-6331780 | MS.gene45542:CDS | 55.0% | |
| CTGTGAGCTTGCGTCGCTTA+AGG | - | chr2.1:6329926-6329945 | None:intergenic | 55.0% | |
| CTTAAGCGACGCAAGCTCAC+AGG | + | chr2.1:6329924-6329943 | MS.gene45542:CDS | 55.0% | |
| GATGGGCGTGGTTCTTGGAT+TGG | + | chr2.1:6331665-6331684 | MS.gene45542:intron | 55.0% | |
| TAAGCAACGTTGCCTGGACG+AGG | - | chr2.1:6330227-6330246 | None:intergenic | 55.0% | |
| ! | GCGATGCAGGGAGTTTTTCG+AGG | + | chr2.1:6330515-6330534 | MS.gene45542:CDS | 55.0% |
| !! | GAGATCTCTTGGTGCTCCTG+CGG | + | chr2.1:6330478-6330497 | MS.gene45542:CDS | 55.0% |
| !! | GCCAAGCCTTGTTTCGCAAC+AGG | + | chr2.1:6330048-6330067 | MS.gene45542:intron | 55.0% |
| AGGTATCCTTGGCCTCGTCC+AGG | + | chr2.1:6330212-6330231 | MS.gene45542:CDS | 60.0% | |
| CCGGGACCCCAACTCTAATG+AGG | - | chr2.1:6331764-6331783 | None:intergenic | 60.0% | |
| CCTACTGCAGCAAGCTCCAC+TGG | - | chr2.1:6329814-6329833 | None:intergenic | 60.0% | |
| CGACGCAAGCTCACAGGTAG+AGG | + | chr2.1:6329930-6329949 | MS.gene45542:CDS | 60.0% | |
| CTGATGGTCTGGCTGTTGCC+GGG | + | chr2.1:6331361-6331380 | MS.gene45542:CDS | 60.0% | |
| CTGCACCGTTGACACCCATG+CGG | - | chr2.1:6330705-6330724 | None:intergenic | 60.0% | |
| CTTGGAAGCTGCGACACCTC+CGG | + | chr2.1:6329963-6329982 | MS.gene45542:CDS | 60.0% | |
| GCCGTCAAAGCCATTGCAGC+GGG | - | chr2.1:6329390-6329409 | None:intergenic | 60.0% | |
| GCTGATGGTCTGGCTGTTGC+CGG | + | chr2.1:6331360-6331379 | MS.gene45542:CDS | 60.0% | |
| !! | CCAGTGGAGCTTGCTGCAGT+AGG | + | chr2.1:6329811-6329830 | MS.gene45542:CDS | 60.0% |
| !! | GCCCGCTGCAATGGCTTTGA+CGG | + | chr2.1:6329386-6329405 | MS.gene45542:CDS | 60.0% |
| ACGTTGCCTGGACGAGGCCA+AGG | - | chr2.1:6330221-6330240 | None:intergenic | 65.0% | |
| TGGTCTGGCTGTTGCCGGGC+AGG | + | chr2.1:6331365-6331384 | MS.gene45542:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 6329027 | 6332623 | 6329027 | ID=MS.gene45542 |
| chr2.1 | mRNA | 6329027 | 6332623 | 6329027 | ID=MS.gene45542.t1;Parent=MS.gene45542 |
| chr2.1 | exon | 6329027 | 6329103 | 6329027 | ID=MS.gene45542.t1.exon1;Parent=MS.gene45542.t1 |
| chr2.1 | CDS | 6329027 | 6329103 | 6329027 | ID=cds.MS.gene45542.t1;Parent=MS.gene45542.t1 |
| chr2.1 | exon | 6329335 | 6329456 | 6329335 | ID=MS.gene45542.t1.exon2;Parent=MS.gene45542.t1 |
| chr2.1 | CDS | 6329335 | 6329456 | 6329335 | ID=cds.MS.gene45542.t1;Parent=MS.gene45542.t1 |
| chr2.1 | exon | 6329809 | 6330018 | 6329809 | ID=MS.gene45542.t1.exon3;Parent=MS.gene45542.t1 |
| chr2.1 | CDS | 6329809 | 6330018 | 6329809 | ID=cds.MS.gene45542.t1;Parent=MS.gene45542.t1 |
| chr2.1 | exon | 6330124 | 6330290 | 6330124 | ID=MS.gene45542.t1.exon4;Parent=MS.gene45542.t1 |
| chr2.1 | CDS | 6330124 | 6330290 | 6330124 | ID=cds.MS.gene45542.t1;Parent=MS.gene45542.t1 |
| chr2.1 | exon | 6330437 | 6330572 | 6330437 | ID=MS.gene45542.t1.exon5;Parent=MS.gene45542.t1 |
| chr2.1 | CDS | 6330437 | 6330572 | 6330437 | ID=cds.MS.gene45542.t1;Parent=MS.gene45542.t1 |
| chr2.1 | exon | 6330650 | 6330746 | 6330650 | ID=MS.gene45542.t1.exon6;Parent=MS.gene45542.t1 |
| chr2.1 | CDS | 6330650 | 6330746 | 6330650 | ID=cds.MS.gene45542.t1;Parent=MS.gene45542.t1 |
| chr2.1 | exon | 6330897 | 6330997 | 6330897 | ID=MS.gene45542.t1.exon7;Parent=MS.gene45542.t1 |
| chr2.1 | CDS | 6330897 | 6330997 | 6330897 | ID=cds.MS.gene45542.t1;Parent=MS.gene45542.t1 |
| chr2.1 | exon | 6331223 | 6331386 | 6331223 | ID=MS.gene45542.t1.exon8;Parent=MS.gene45542.t1 |
| chr2.1 | CDS | 6331223 | 6331386 | 6331223 | ID=cds.MS.gene45542.t1;Parent=MS.gene45542.t1 |
| chr2.1 | exon | 6331468 | 6331539 | 6331468 | ID=MS.gene45542.t1.exon9;Parent=MS.gene45542.t1 |
| chr2.1 | CDS | 6331468 | 6331539 | 6331468 | ID=cds.MS.gene45542.t1;Parent=MS.gene45542.t1 |
| chr2.1 | exon | 6331666 | 6331782 | 6331666 | ID=MS.gene45542.t1.exon10;Parent=MS.gene45542.t1 |
| chr2.1 | CDS | 6331666 | 6331782 | 6331666 | ID=cds.MS.gene45542.t1;Parent=MS.gene45542.t1 |
| chr2.1 | exon | 6331884 | 6331979 | 6331884 | ID=MS.gene45542.t1.exon11;Parent=MS.gene45542.t1 |
| chr2.1 | CDS | 6331884 | 6331979 | 6331884 | ID=cds.MS.gene45542.t1;Parent=MS.gene45542.t1 |
| chr2.1 | exon | 6332339 | 6332460 | 6332339 | ID=MS.gene45542.t1.exon12;Parent=MS.gene45542.t1 |
| chr2.1 | CDS | 6332339 | 6332460 | 6332339 | ID=cds.MS.gene45542.t1;Parent=MS.gene45542.t1 |
| chr2.1 | exon | 6332581 | 6332623 | 6332581 | ID=MS.gene45542.t1.exon13;Parent=MS.gene45542.t1 |
| chr2.1 | CDS | 6332581 | 6332623 | 6332581 | ID=cds.MS.gene45542.t1;Parent=MS.gene45542.t1 |
| Gene Sequence |
| Protein sequence |
