Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23909.t1 | XP_003612847.1 | 92.1 | 443 | 35 | 0 | 80 | 522 | 95 | 537 | 2.80E-242 | 847.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23909.t1 | Q9JI90 | 29.0 | 452 | 270 | 12 | 113 | 523 | 7 | 448 | 1.2e-52 | 209.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23909.t1 | G7KDN8 | 92.1 | 443 | 35 | 0 | 80 | 522 | 95 | 537 | 2.0e-242 | 847.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene23909 | 0.830105 | 3.54E-55 | -1.69E-46 |
| MS.gene053963 | MS.gene23909 | 0.809606 | 1.74E-50 | -1.69E-46 |
| MS.gene054892 | MS.gene23909 | 0.810111 | 1.36E-50 | -1.69E-46 |
| MS.gene054893 | MS.gene23909 | 0.806778 | 6.97E-50 | -1.69E-46 |
| MS.gene055147 | MS.gene23909 | 0.806649 | 7.43E-50 | -1.69E-46 |
| MS.gene056605 | MS.gene23909 | 0.800848 | 1.19E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23909.t1 | MTR_5g029700 | 91.954 | 522 | 39 | 2 | 1 | 522 | 19 | 537 | 0.0 | 974 |
| MS.gene23909.t1 | MTR_3g462570 | 30.516 | 213 | 123 | 8 | 324 | 530 | 64 | 257 | 1.49e-16 | 83.2 |
| MS.gene23909.t1 | MTR_3g462590 | 28.507 | 221 | 129 | 10 | 307 | 521 | 97 | 294 | 1.77e-15 | 77.8 |
| MS.gene23909.t1 | MTR_4g068940 | 23.556 | 225 | 121 | 5 | 307 | 512 | 126 | 318 | 6.65e-13 | 71.6 |
| MS.gene23909.t1 | MTR_4g068940 | 23.556 | 225 | 121 | 5 | 307 | 512 | 126 | 318 | 7.31e-13 | 71.6 |
| MS.gene23909.t1 | MTR_4g063815 | 25.118 | 211 | 132 | 9 | 315 | 519 | 63 | 253 | 2.39e-12 | 67.8 |
| MS.gene23909.t1 | MTR_3g463310 | 26.471 | 204 | 122 | 7 | 316 | 511 | 43 | 226 | 3.59e-12 | 66.6 |
| MS.gene23909.t1 | MTR_3g463280 | 28.641 | 206 | 116 | 10 | 316 | 511 | 42 | 226 | 5.40e-12 | 66.6 |
| MS.gene23909.t1 | MTR_2g044290 | 26.111 | 180 | 109 | 5 | 324 | 498 | 98 | 258 | 3.42e-11 | 64.3 |
| MS.gene23909.t1 | MTR_4g063810 | 26.020 | 196 | 120 | 8 | 307 | 496 | 91 | 267 | 7.81e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23909.t1 | AT1G32340 | 57.968 | 433 | 176 | 2 | 91 | 523 | 165 | 591 | 0.0 | 551 |
| MS.gene23909.t1 | AT3G14250 | 26.027 | 219 | 136 | 8 | 307 | 516 | 95 | 296 | 2.43e-16 | 80.5 |
| MS.gene23909.t1 | AT4G34370 | 25.339 | 221 | 135 | 6 | 307 | 519 | 123 | 321 | 1.93e-15 | 79.7 |
| MS.gene23909.t1 | AT3G27710 | 24.000 | 225 | 143 | 5 | 302 | 519 | 116 | 319 | 2.21e-14 | 76.3 |
| MS.gene23909.t1 | AT2G16090 | 21.973 | 223 | 144 | 6 | 309 | 523 | 126 | 326 | 7.03e-12 | 68.6 |
| MS.gene23909.t1 | AT2G16090 | 21.973 | 223 | 144 | 6 | 309 | 523 | 126 | 326 | 7.60e-12 | 68.6 |
| MS.gene23909.t1 | AT2G16090 | 21.973 | 223 | 144 | 6 | 309 | 523 | 126 | 326 | 8.58e-12 | 68.2 |
| MS.gene23909.t1 | AT2G16090 | 21.973 | 223 | 144 | 6 | 309 | 523 | 66 | 266 | 1.11e-11 | 67.8 |
| MS.gene23909.t1 | AT2G16090 | 21.973 | 223 | 144 | 6 | 309 | 523 | 66 | 266 | 1.48e-11 | 67.4 |
| MS.gene23909.t1 | AT2G31760 | 22.172 | 221 | 143 | 7 | 306 | 520 | 120 | 317 | 1.64e-11 | 67.0 |
| MS.gene23909.t1 | AT2G31770 | 23.256 | 215 | 136 | 7 | 306 | 512 | 127 | 320 | 4.07e-11 | 65.9 |
Find 103 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATAATAATGATATTGATTT+TGG | 0.119826 | 5.4:-20139056 | MS.gene23909:CDS |
| AACATTCATGCAATTCTTTA+AGG | 0.130448 | 5.4:+20137514 | None:intergenic |
| TCAAAATTCATCTCGTTTAA+AGG | 0.154772 | 5.4:-20135840 | MS.gene23909:CDS |
| GTTCCAAGTTGGATTTAATA+TGG | 0.215214 | 5.4:-20137749 | MS.gene23909:CDS |
| ACACATAAACATTGATGTTT+TGG | 0.229817 | 5.4:-20137982 | MS.gene23909:CDS |
| AAATTCTTCTCTTTCTCATT+TGG | 0.248104 | 5.4:-20137676 | MS.gene23909:CDS |
| ATCATAATCATCTTCTTCTT+TGG | 0.249868 | 5.4:+20139076 | None:intergenic |
| GCACGCGTGGTTTCGGGAAT+TGG | 0.254382 | 5.4:-20137600 | MS.gene23909:CDS |
| CATTGATTGTGATCTCTTCC+TGG | 0.262345 | 5.4:+20138973 | None:intergenic |
| GTGGACGCACGCGTGGTTTC+GGG | 0.268873 | 5.4:-20137606 | MS.gene23909:CDS |
| TTCTTTGGTCTTGCTTGAAC+TGG | 0.277801 | 5.4:+20139091 | None:intergenic |
| TGTGGACGCACGCGTGGTTT+CGG | 0.286824 | 5.4:-20137607 | MS.gene23909:CDS |
| AGACTTGTGGTTCTAGTATT+GGG | 0.294386 | 5.4:-20135254 | MS.gene23909:CDS |
| CAAAATTCATCTCGTTTAAA+GGG | 0.297476 | 5.4:-20135839 | MS.gene23909:CDS |
| AATTCTTCTCTTTCTCATTT+GGG | 0.297733 | 5.4:-20137675 | MS.gene23909:CDS |
| TTGGTCTTCCTCCTCTATAC+AGG | 0.323512 | 5.4:+20137039 | None:intergenic |
| GAAATCGCCATACCACAAAA+AGG | 0.329741 | 5.4:+20135737 | None:intergenic |
| TTGGTATGAATAATACTAAT+AGG | 0.344849 | 5.4:-20139037 | MS.gene23909:CDS |
| GAGATTAGATTAGGTCCTTA+TGG | 0.346027 | 5.4:-20137642 | MS.gene23909:CDS |
| AATGAAGCTTCAGTTTCTTC+AGG | 0.361096 | 5.4:-20136930 | MS.gene23909:intron |
| GAAACTGAAGCTTCATTTCA+AGG | 0.366934 | 5.4:+20136936 | None:intergenic |
| GAGACTTGTGGTTCTAGTAT+TGG | 0.371074 | 5.4:-20135255 | MS.gene23909:CDS |
| TCTTCAACCGCCGCAGAGTT+AGG | 0.376976 | 5.4:+20139185 | None:intergenic |
| GCATGGTAACCGGACGAATT+CGG | 0.380989 | 5.4:+20137291 | None:intergenic |
| TTTGATGAGGAGATTAGATT+AGG | 0.382386 | 5.4:-20137651 | MS.gene23909:CDS |
| CAGATCCATATGGACATTAC+AGG | 0.386796 | 5.4:-20135631 | MS.gene23909:intron |
| TCAACAACCTCAGGGGAAAC+TGG | 0.397891 | 5.4:+20139161 | None:intergenic |
| TGATTTACAGTTGGGTAGAA+TGG | 0.399214 | 5.4:-20137704 | MS.gene23909:CDS |
| AACGTAGCGGAGTTTCGATT+TGG | 0.416847 | 5.4:+20139235 | None:intergenic |
| TATTTACAATCTCTGTTAAG+TGG | 0.418287 | 5.4:-20137800 | MS.gene23909:CDS |
| TTAACAGAGATTGTAAATAT+AGG | 0.441758 | 5.4:+20137804 | None:intergenic |
| TACAATCTCTGTTAAGTGGC+TGG | 0.446958 | 5.4:-20137796 | MS.gene23909:CDS |
| AGGTGAAGAAACAATAAGTT+CGG | 0.451785 | 5.4:+20139205 | None:intergenic |
| CCATACCTGTAATGTCCATA+TGG | 0.460598 | 5.4:+20135626 | None:intergenic |
| CTGTTGACATCAACAACCTC+AGG | 0.469599 | 5.4:+20139152 | None:intergenic |
| TTTAAGTTTATGTTCCAAGT+TGG | 0.477425 | 5.4:-20137760 | MS.gene23909:CDS |
| TACAGGGTGTTTCACATCTC+GGG | 0.483714 | 5.4:+20137056 | None:intergenic |
| CTTTACATGTATCTGTGTAA+AGG | 0.484010 | 5.4:+20137237 | None:intergenic |
| GCAGGAAGTGATTTACAGTT+GGG | 0.487041 | 5.4:-20137712 | MS.gene23909:CDS |
| TAAAGGTCTGTAAGCATTTG+CGG | 0.496607 | 5.4:+20137254 | None:intergenic |
| AAAATGAGGTGCGGTAATTG+TGG | 0.499022 | 5.4:-20135695 | MS.gene23909:CDS |
| GGCAGGAAGTGATTTACAGT+TGG | 0.502635 | 5.4:-20137713 | MS.gene23909:CDS |
| AATAAACATGTCAAAACAAT+CGG | 0.503126 | 5.4:+20137855 | None:intergenic |
| AATATAGGCGGTTGGTGACT+CGG | 0.504602 | 5.4:+20137819 | None:intergenic |
| ACAACACGATTCACACCATA+AGG | 0.505722 | 5.4:+20137627 | None:intergenic |
| TTCTCATTTGGGATTTGATG+AGG | 0.511092 | 5.4:-20137664 | MS.gene23909:CDS |
| TGCAGGGAACGCCGCCATGT+TGG | 0.511963 | 5.4:-20136974 | MS.gene23909:CDS |
| GGTATGGCGATTTCTCGAAC+TGG | 0.516919 | 5.4:-20135728 | MS.gene23909:CDS |
| TCAATTCCATCAAACATGAA+TGG | 0.521521 | 5.4:-20139299 | None:intergenic |
| ATACAGGGTGTTTCACATCT+CGG | 0.522518 | 5.4:+20137055 | None:intergenic |
| ATTGATTGTGATCTCTTCCT+GGG | 0.522695 | 5.4:+20138974 | None:intergenic |
| CTTGACTCATCAGATCCATA+TGG | 0.530011 | 5.4:-20135641 | MS.gene23909:CDS |
| GTTTGCTATAGTGAATATCC+AGG | 0.532612 | 5.4:-20137489 | MS.gene23909:intron |
| CGACGAGGAATACAAACGTT+GGG | 0.534421 | 5.4:-20137131 | MS.gene23909:CDS |
| TGTCCATATTAAATCCAACT+TGG | 0.537680 | 5.4:+20137746 | None:intergenic |
| ATGTGAAACACCCTGTATAG+AGG | 0.539086 | 5.4:-20137050 | MS.gene23909:CDS |
| AAACTGAAGCTTCATTTCAA+GGG | 0.545570 | 5.4:+20136937 | None:intergenic |
| TCAACAAATTGAATTATCCC+AGG | 0.548612 | 5.4:-20138991 | MS.gene23909:CDS |
| CTCGTTTAAAGGGGAATCAA+AGG | 0.550290 | 5.4:-20135829 | MS.gene23909:CDS |
| CTGGAGGTTGTAACAAAATG+AGG | 0.552755 | 5.4:-20135709 | MS.gene23909:CDS |
| TTCAGCCTTGATACATGGAA+AGG | 0.559295 | 5.4:-20138134 | MS.gene23909:CDS |
| GCAGACCTTTCCATGTATCA+AGG | 0.567121 | 5.4:+20138129 | None:intergenic |
| ATGGACAGAACAACAAGGGC+AGG | 0.569567 | 5.4:-20137730 | MS.gene23909:CDS |
| TTCATTAACAGAGTTAACCT+TGG | 0.570315 | 5.4:+20137941 | None:intergenic |
| TGGTGACTCGGATATGACTT+AGG | 0.571289 | 5.4:+20137831 | None:intergenic |
| AGTCAAGTGCTTTGTTGCAG+AGG | 0.573825 | 5.4:+20135657 | None:intergenic |
| AAAATTCATCTCGTTTAAAG+GGG | 0.576489 | 5.4:-20135838 | MS.gene23909:CDS |
| TGGTCTTCCTCCTCTATACA+GGG | 0.578440 | 5.4:+20137040 | None:intergenic |
| CAACAGGTACCGAATTCGTC+CGG | 0.578448 | 5.4:-20137300 | MS.gene23909:intron |
| TCATGCATGCAATGCCAACA+TGG | 0.596649 | 5.4:+20136960 | None:intergenic |
| CTTTACACAGATACATGTAA+AGG | 0.597124 | 5.4:-20137236 | MS.gene23909:CDS |
| GAACAACACCGTTGATGACG+TGG | 0.598566 | 5.4:-20139114 | MS.gene23909:CDS |
| TGAAATAGGCATTACTGCCA+AGG | 0.598936 | 5.4:-20137958 | MS.gene23909:CDS |
| TGAACTGGCCACGTCATCAA+CGG | 0.599174 | 5.4:+20139106 | None:intergenic |
| GTTTACAAGAGCAATATCAC+AGG | 0.600502 | 5.4:+20135227 | None:intergenic |
| CATGTAAAGGAAGGAAACGT+TGG | 0.602358 | 5.4:-20137223 | MS.gene23909:CDS |
| CATGGCGGCGTTCCCTGCAA+AGG | 0.604043 | 5.4:+20136978 | None:intergenic |
| TGATCAATTGCAGCAAGATG+AGG | 0.606467 | 5.4:-20138952 | MS.gene23909:intron |
| TCGTGTTGTGGACGCACGCG+TGG | 0.607369 | 5.4:-20137613 | MS.gene23909:CDS |
| AGATTGTAAATATAGGCGGT+TGG | 0.611680 | 5.4:+20137811 | None:intergenic |
| TGTTGACATCAACAACCTCA+GGG | 0.616723 | 5.4:+20139153 | None:intergenic |
| ATGGCGATTTCTCGAACTGG+AGG | 0.619538 | 5.4:-20135725 | MS.gene23909:CDS |
| TTCTTCACCTAACTCTGCGG+CGG | 0.619774 | 5.4:-20139192 | MS.gene23909:CDS |
| ATGTCTTGATGCAAAATGCA+AGG | 0.619818 | 5.4:-20137191 | MS.gene23909:CDS |
| ATGTGGAACGTTGAGACTTG+TGG | 0.626025 | 5.4:-20135267 | MS.gene23909:CDS |
| AAACATGTCAAAACAATCGG+TGG | 0.627900 | 5.4:+20137858 | None:intergenic |
| TGCAAGGAGATGATTCCACC+AGG | 0.628043 | 5.4:-20137175 | MS.gene23909:CDS |
| TTATGGTGTGAATCGTGTTG+TGG | 0.628102 | 5.4:-20137625 | MS.gene23909:CDS |
| ACTGGACTAACAACAACATG+TGG | 0.630519 | 5.4:-20135284 | MS.gene23909:CDS |
| AAAACACTTTCTTGGCGACG+AGG | 0.633505 | 5.4:-20137146 | MS.gene23909:CDS |
| ACACAGATACATGTAAAGGA+AGG | 0.633626 | 5.4:-20137232 | MS.gene23909:CDS |
| ACAGAGATTGTAAATATAGG+CGG | 0.637777 | 5.4:+20137807 | None:intergenic |
| GCGACGAGGAATACAAACGT+TGG | 0.641324 | 5.4:-20137132 | MS.gene23909:CDS |
| TGTTTCTTCACCTAACTCTG+CGG | 0.644111 | 5.4:-20139195 | MS.gene23909:CDS |
| GTTGTTGTTGTGATTTGTTG+CGG | 0.647959 | 5.4:+20139264 | None:intergenic |
| TGAAACACCCTGTATAGAGG+AGG | 0.655684 | 5.4:-20137047 | MS.gene23909:CDS |
| GTTCGGATTTGTTAACGTAG+CGG | 0.658547 | 5.4:+20139222 | None:intergenic |
| TGAAGAACCAGTTTCCCCTG+AGG | 0.673121 | 5.4:-20139168 | MS.gene23909:CDS |
| TGCATGCAATGCCAACATGG+CGG | 0.684498 | 5.4:+20136963 | None:intergenic |
| TAATATGGACAGAACAACAA+GGG | 0.698476 | 5.4:-20137734 | MS.gene23909:CDS |
| GGTTGTAACAAAATGAGGTG+CGG | 0.709781 | 5.4:-20135704 | MS.gene23909:CDS |
| TTAATATGGACAGAACAACA+AGG | 0.714842 | 5.4:-20137735 | MS.gene23909:CDS |
| GTTGACATCAACAACCTCAG+GGG | 0.740325 | 5.4:+20139154 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTAAATAAAAAAAATTGG+TGG | + | chr5.4:20137173-20137192 | None:intergenic | 10.0% |
| !!! | TAATTTTTTTAACCTAAAAA+AGG | - | chr5.4:20138607-20138626 | MS.gene23909:intron | 10.0% |
| !!! | GATAATAATGATATTGATTT+TGG | - | chr5.4:20135452-20135471 | MS.gene23909:intron | 15.0% |
| !!! | TCATGTCATATTTTTATTTT+AGG | + | chr5.4:20139148-20139167 | None:intergenic | 15.0% |
| !!! | TTTTAGGTTAAAAAAATTAC+AGG | + | chr5.4:20138606-20138625 | None:intergenic | 15.0% |
| !! | AAAAACAGGTTTCTTAAAAT+TGG | + | chr5.4:20138949-20138968 | None:intergenic | 20.0% |
| !! | AATAAACATGTCAAAACAAT+CGG | + | chr5.4:20136656-20136675 | None:intergenic | 20.0% |
| !! | AATAAGTATAAATGTGTGTT+TGG | + | chr5.4:20138285-20138304 | None:intergenic | 20.0% |
| !! | ATACTACTAATAACATCAAA+AGG | + | chr5.4:20135619-20135638 | None:intergenic | 20.0% |
| !! | ATCCTACATACAAATAAAAA+GGG | + | chr5.4:20138000-20138019 | None:intergenic | 20.0% |
| !! | GTGATATTTGGAAATTTATT+TGG | - | chr5.4:20136247-20136266 | MS.gene23909:intron | 20.0% |
| !! | TACATACCTTTACATTAAAT+TGG | + | chr5.4:20139108-20139127 | None:intergenic | 20.0% |
| !! | TTAACAGAGATTGTAAATAT+AGG | + | chr5.4:20136707-20136726 | None:intergenic | 20.0% |
| !! | TTGGTATGAATAATACTAAT+AGG | - | chr5.4:20135471-20135490 | MS.gene23909:intron | 20.0% |
| !! | TTTCTTAAAATTGGAATGTT+TGG | + | chr5.4:20138940-20138959 | None:intergenic | 20.0% |
| !!! | AAAAGCTAAAAAAGCATTTT+GGG | + | chr5.4:20137506-20137525 | None:intergenic | 20.0% |
| !!! | TTAATTTTCACCAAAAACTT+CGG | - | chr5.4:20138346-20138365 | MS.gene23909:intron | 20.0% |
| !!! | TTCTGTTATTTCAAAGTTTA+TGG | - | chr5.4:20136050-20136069 | MS.gene23909:intron | 20.0% |
| ! | AAAAAAAAAGAGTCACGAAT+AGG | + | chr5.4:20136489-20136508 | None:intergenic | 25.0% |
| ! | AAAATTCATCTCGTTTAAAG+GGG | - | chr5.4:20138670-20138689 | MS.gene23909:intron | 25.0% |
| ! | AAATAAGCTGATAAGAAGAA+TGG | - | chr5.4:20135727-20135746 | MS.gene23909:CDS | 25.0% |
| ! | AAATTCTTCTCTTTCTCATT+TGG | - | chr5.4:20136832-20136851 | MS.gene23909:intron | 25.0% |
| ! | AACATTCATGCAATTCTTTA+AGG | + | chr5.4:20136997-20137016 | None:intergenic | 25.0% |
| ! | AATATTAAGTCAAGCATAGT+GGG | + | chr5.4:20137075-20137094 | None:intergenic | 25.0% |
| ! | AATCAAATTAACTTTGACCA+TGG | - | chr5.4:20137126-20137145 | MS.gene23909:CDS | 25.0% |
| ! | AATGCTAAAAGCTATAGTTT+GGG | + | chr5.4:20138250-20138269 | None:intergenic | 25.0% |
| ! | AATTCTTCTCTTTCTCATTT+GGG | - | chr5.4:20136833-20136852 | MS.gene23909:intron | 25.0% |
| ! | ACATACAAATAAAAAGGGAA+TGG | + | chr5.4:20137995-20138014 | None:intergenic | 25.0% |
| ! | ATCATAATCATCTTCTTCTT+TGG | + | chr5.4:20135435-20135454 | None:intergenic | 25.0% |
| ! | CAAAATTCATCTCGTTTAAA+GGG | - | chr5.4:20138669-20138688 | MS.gene23909:intron | 25.0% |
| ! | CATCCTACATACAAATAAAA+AGG | + | chr5.4:20138001-20138020 | None:intergenic | 25.0% |
| ! | GAGGTAATTATCAATCTAAT+TGG | - | chr5.4:20135575-20135594 | MS.gene23909:intron | 25.0% |
| ! | GATCTTGTTCTAATTAGAAT+AGG | - | chr5.4:20138454-20138473 | MS.gene23909:intron | 25.0% |
| ! | GCAAAACACAATTTATTGAT+TGG | - | chr5.4:20136204-20136223 | MS.gene23909:intron | 25.0% |
| ! | GCGTGTTAATTAAATTAAGA+AGG | - | chr5.4:20135888-20135907 | MS.gene23909:intron | 25.0% |
| ! | GTTTACATATTACAGCAAAT+AGG | + | chr5.4:20137944-20137963 | None:intergenic | 25.0% |
| ! | TATTTACAATCTCTGTTAAG+TGG | - | chr5.4:20136708-20136727 | MS.gene23909:intron | 25.0% |
| ! | TCAAAATTCATCTCGTTTAA+AGG | - | chr5.4:20138668-20138687 | MS.gene23909:intron | 25.0% |
| ! | TCATTAACTGTTATTATACG+AGG | - | chr5.4:20138508-20138527 | MS.gene23909:intron | 25.0% |
| ! | TCGTATAATAACAGTTAATG+AGG | + | chr5.4:20138509-20138528 | None:intergenic | 25.0% |
| ! | TTGGTGAAAATTAATATACG+AGG | + | chr5.4:20138340-20138359 | None:intergenic | 25.0% |
| ! | TTTCCTTAAATGACAAAAAC+AGG | + | chr5.4:20138963-20138982 | None:intergenic | 25.0% |
| !! | AAAAAAGGCTTCAATTTTTC+TGG | - | chr5.4:20138622-20138641 | MS.gene23909:intron | 25.0% |
| !! | AAAAACTTCGGAAATTTTTG+TGG | - | chr5.4:20138358-20138377 | MS.gene23909:intron | 25.0% |
| !! | ACAAAAATTTCCGAAGTTTT+TGG | + | chr5.4:20138359-20138378 | None:intergenic | 25.0% |
| !! | ACACATAAACATTGATGTTT+TGG | - | chr5.4:20136526-20136545 | MS.gene23909:intron | 25.0% |
| !! | CACATAAACATTGATGTTTT+GGG | - | chr5.4:20136527-20136546 | MS.gene23909:intron | 25.0% |
| !! | TATATGACATAGAGGATTTT+TGG | - | chr5.4:20138097-20138116 | MS.gene23909:intron | 25.0% |
| !! | TTTAAGTTTATGTTCCAAGT+TGG | - | chr5.4:20136748-20136767 | MS.gene23909:intron | 25.0% |
| !!! | AAACCATTCATTTTAGTCTT+TGG | + | chr5.4:20139189-20139208 | None:intergenic | 25.0% |
| !!! | AAACCTGTTTTTGTCATTTA+AGG | - | chr5.4:20138957-20138976 | MS.gene23909:CDS | 25.0% |
| !!! | AAGTTATAAGCTGTTTTCAT+AGG | - | chr5.4:20135684-20135703 | MS.gene23909:CDS | 25.0% |
| !!! | ATGGTTTGGATATTTTCAAA+GGG | + | chr5.4:20138207-20138226 | None:intergenic | 25.0% |
| !!! | ATTCTTTAAGGAAGTTTTGA+TGG | + | chr5.4:20136985-20137004 | None:intergenic | 25.0% |
| !!! | CAAAAGCTAAAAAAGCATTT+TGG | + | chr5.4:20137507-20137526 | None:intergenic | 25.0% |
| !!! | GAAAAATTGAAGCCTTTTTT+AGG | + | chr5.4:20138622-20138641 | None:intergenic | 25.0% |
| !!! | TATGGTTTGGATATTTTCAA+AGG | + | chr5.4:20138208-20138227 | None:intergenic | 25.0% |
| !!! | TTCCCTTTTTATTTGTATGT+AGG | - | chr5.4:20137995-20138014 | MS.gene23909:intron | 25.0% |
| !!! | TTGTTGTAGCTTTGTAAAAA+AGG | + | chr5.4:20136953-20136972 | None:intergenic | 25.0% |
| AAAAATGTTTGCATGGTAAC+CGG | + | chr5.4:20137230-20137249 | None:intergenic | 30.0% | |
| AAACTGAAGCTTCATTTCAA+GGG | + | chr5.4:20137574-20137593 | None:intergenic | 30.0% | |
| ACAGAGATTGTAAATATAGG+CGG | + | chr5.4:20136704-20136723 | None:intergenic | 30.0% | |
| ACAGTTATGTTGTTGATGTA+AGG | + | chr5.4:20138431-20138450 | None:intergenic | 30.0% | |
| ACATCAACAACATAACTGTT+TGG | - | chr5.4:20138432-20138451 | MS.gene23909:intron | 30.0% | |
| AGCATATGTTGAAAATAACC+TGG | + | chr5.4:20137040-20137059 | None:intergenic | 30.0% | |
| AGGTGAAGAAACAATAAGTT+CGG | + | chr5.4:20135306-20135325 | None:intergenic | 30.0% | |
| ATATATGTCCAGAAATCCAT+AGG | - | chr5.4:20137607-20137626 | MS.gene23909:CDS | 30.0% | |
| CTTTACACAGATACATGTAA+AGG | - | chr5.4:20137272-20137291 | MS.gene23909:CDS | 30.0% | |
| CTTTACATGTATCTGTGTAA+AGG | + | chr5.4:20137274-20137293 | None:intergenic | 30.0% | |
| GAATATTAAGTCAAGCATAG+TGG | + | chr5.4:20137076-20137095 | None:intergenic | 30.0% | |
| GAATGCTAAAAGCTATAGTT+TGG | + | chr5.4:20138251-20138270 | None:intergenic | 30.0% | |
| GAGTTAATCAAAATGTGCTA+TGG | + | chr5.4:20137749-20137768 | None:intergenic | 30.0% | |
| GTTTGCCAAAACTATGTTAT+TGG | + | chr5.4:20136429-20136448 | None:intergenic | 30.0% | |
| TAATATGGACAGAACAACAA+GGG | - | chr5.4:20136774-20136793 | MS.gene23909:intron | 30.0% | |
| TCAACAAATTGAATTATCCC+AGG | - | chr5.4:20135517-20135536 | MS.gene23909:intron | 30.0% | |
| TCAATGTTTATGTGTATCTG+AGG | + | chr5.4:20136521-20136540 | None:intergenic | 30.0% | |
| TGTCCATATTAAATCCAACT+TGG | + | chr5.4:20136765-20136784 | None:intergenic | 30.0% | |
| TTAATATGGACAGAACAACA+AGG | - | chr5.4:20136773-20136792 | MS.gene23909:intron | 30.0% | |
| TTCATTAACAGAGTTAACCT+TGG | + | chr5.4:20136570-20136589 | None:intergenic | 30.0% | |
| TTGTCGCCAATTTAATGTAA+AGG | - | chr5.4:20139099-20139118 | MS.gene23909:CDS | 30.0% | |
| TTTGATGAGGAGATTAGATT+AGG | - | chr5.4:20136857-20136876 | MS.gene23909:intron | 30.0% | |
| ! | AAAAGCTTTTGGACAAACTA+TGG | + | chr5.4:20138226-20138245 | None:intergenic | 30.0% |
| ! | ATAGCTTTTAGCATTCCAAA+TGG | - | chr5.4:20138255-20138274 | MS.gene23909:intron | 30.0% |
| ! | ATAGTTTGGGAAAAAGCTTT+TGG | + | chr5.4:20138237-20138256 | None:intergenic | 30.0% |
| ! | ATTGGTAATAGAGAGATAGA+TGG | - | chr5.4:20136222-20136241 | MS.gene23909:intron | 30.0% |
| ! | CTATGCCAATAACATAGTTT+TGG | - | chr5.4:20136421-20136440 | MS.gene23909:intron | 30.0% |
| ! | GTTCCAAGTTGGATTTAATA+TGG | - | chr5.4:20136759-20136778 | MS.gene23909:intron | 30.0% |
| ! | TAGCTTTTAGCATTCCAAAT+GGG | - | chr5.4:20138256-20138275 | MS.gene23909:intron | 30.0% |
| ! | TTATGTTTTGCAGTTACTTG+TGG | - | chr5.4:20136325-20136344 | MS.gene23909:intron | 30.0% |
| !! | AACTTTCTTTTTCATCCAAC+AGG | - | chr5.4:20137192-20137211 | MS.gene23909:CDS | 30.0% |
| !! | ATTGATGTTTTGGGTGAAAT+AGG | - | chr5.4:20136536-20136555 | MS.gene23909:intron | 30.0% |
| !!! | ACTACCTAGTTTTGCTATTA+GGG | - | chr5.4:20137786-20137805 | MS.gene23909:CDS | 30.0% |
| !!! | GCTTTAGAAATTCTTTTGCA+TGG | - | chr5.4:20138904-20138923 | MS.gene23909:intron | 30.0% |
| AAACATGTCAAAACAATCGG+TGG | + | chr5.4:20136653-20136672 | None:intergenic | 35.0% | |
| AAATCGCCATACCACAAAAA+GGG | + | chr5.4:20138773-20138792 | None:intergenic | 35.0% | |
| AAGAGCCATAACAACATATG+TGG | - | chr5.4:20136177-20136196 | MS.gene23909:intron | 35.0% | |
| AAGGGAGATTCAAACATGAT+TGG | + | chr5.4:20138189-20138208 | None:intergenic | 35.0% | |
| AATGAAGCTTCAGTTTCTTC+AGG | - | chr5.4:20137578-20137597 | MS.gene23909:CDS | 35.0% | |
| AATTGTCAACCATTTCTCGT+GGG | + | chr5.4:20138997-20139016 | None:intergenic | 35.0% | |
| ACACAGATACATGTAAAGGA+AGG | - | chr5.4:20137276-20137295 | MS.gene23909:CDS | 35.0% | |
| ACATTAAATTGGCGACAACT+AGG | + | chr5.4:20139097-20139116 | None:intergenic | 35.0% | |
| AGATAGATGGACGTGATATT+TGG | - | chr5.4:20136235-20136254 | MS.gene23909:intron | 35.0% | |
| AGATTGTAAATATAGGCGGT+TGG | + | chr5.4:20136700-20136719 | None:intergenic | 35.0% | |
| AGTGAAAGACATAACAACCA+TGG | + | chr5.4:20137146-20137165 | None:intergenic | 35.0% | |
| ATAAAATGAAGCAGCTCCTA+TGG | + | chr5.4:20137626-20137645 | None:intergenic | 35.0% | |
| ATGTCTTGATGCAAAATGCA+AGG | - | chr5.4:20137317-20137336 | MS.gene23909:intron | 35.0% | |
| ATTGATTGTGATCTCTTCCT+GGG | + | chr5.4:20135537-20135556 | None:intergenic | 35.0% | |
| ATTGCCCTAATAGCAAAACT+AGG | + | chr5.4:20137793-20137812 | None:intergenic | 35.0% | |
| ATTTGAAGAATCTGCATGTG+TGG | - | chr5.4:20137855-20137874 | MS.gene23909:CDS | 35.0% | |
| CGGCAAAAAAAATGTTTGCA+TGG | + | chr5.4:20137237-20137256 | None:intergenic | 35.0% | |
| CTACAACGTAATTATGTCTC+CGG | - | chr5.4:20136001-20136020 | MS.gene23909:intron | 35.0% | |
| CTATCTGCTATATGACATAG+AGG | - | chr5.4:20138089-20138108 | MS.gene23909:intron | 35.0% | |
| GAAACTGAAGCTTCATTTCA+AGG | + | chr5.4:20137575-20137594 | None:intergenic | 35.0% | |
| GAGATTAGATTAGGTCCTTA+TGG | - | chr5.4:20136866-20136885 | MS.gene23909:intron | 35.0% | |
| GCTCCAAAGACTAAAATGAA+TGG | - | chr5.4:20139183-20139202 | MS.gene23909:CDS | 35.0% | |
| GGCAAAGATTAAGTTAAGAG+CGG | + | chr5.4:20138159-20138178 | None:intergenic | 35.0% | |
| GTTTACAAGAGCAATATCAC+AGG | + | chr5.4:20139284-20139303 | None:intergenic | 35.0% | |
| GTTTATGTGTATCTGAGGAA+AGG | + | chr5.4:20136516-20136535 | None:intergenic | 35.0% | |
| TAAAGGTCTGTAAGCATTTG+CGG | + | chr5.4:20137257-20137276 | None:intergenic | 35.0% | |
| TAACCAGTGATGTCAAATAG+TGG | - | chr5.4:20137716-20137735 | MS.gene23909:CDS | 35.0% | |
| TACGCAAATAGCAACAACAA+CGG | - | chr5.4:20135963-20135982 | MS.gene23909:intron | 35.0% | |
| TCATATAGCAGATAGTGTTG+CGG | + | chr5.4:20138084-20138103 | None:intergenic | 35.0% | |
| TGATTTACAGTTGGGTAGAA+TGG | - | chr5.4:20136804-20136823 | MS.gene23909:intron | 35.0% | |
| TGCAAGGTTTACATATTGCA+AGG | + | chr5.4:20137966-20137985 | None:intergenic | 35.0% | |
| ! | CTTTTGGACAAACTATGGTT+TGG | + | chr5.4:20138221-20138240 | None:intergenic | 35.0% |
| ! | TAGCTTTTGTAACCTTTGCA+GGG | - | chr5.4:20137518-20137537 | MS.gene23909:CDS | 35.0% |
| ! | TGGCTCTTATTTGTGAAAAG+CGG | + | chr5.4:20136165-20136184 | None:intergenic | 35.0% |
| ! | TTCTCATTTGGGATTTGATG+AGG | - | chr5.4:20136844-20136863 | MS.gene23909:intron | 35.0% |
| !! | AGACTTGTGGTTCTAGTATT+GGG | - | chr5.4:20139254-20139273 | MS.gene23909:CDS | 35.0% |
| !! | ATTTTGACGATCCTATGACA+AGG | + | chr5.4:20138655-20138674 | None:intergenic | 35.0% |
| !! | CATGTATTTGTTGTACTTCC+TGG | + | chr5.4:20139042-20139061 | None:intergenic | 35.0% |
| !! | GTTGTTGTTGTGATTTGTTG+CGG | + | chr5.4:20135247-20135266 | None:intergenic | 35.0% |
| !! | GTTTGCTATAGTGAATATCC+AGG | - | chr5.4:20137019-20137038 | MS.gene23909:CDS | 35.0% |
| !! | TAATTTGATTTGAGCAAGCG+CGG | + | chr5.4:20137116-20137135 | None:intergenic | 35.0% |
| !! | TTAGCTTTTGTAACCTTTGC+AGG | - | chr5.4:20137517-20137536 | MS.gene23909:CDS | 35.0% |
| !! | TTTCTAAAGCCCCTAAAAAC+TGG | + | chr5.4:20137829-20137848 | None:intergenic | 35.0% |
| !!! | AGAAAGTGTTTTAAAAGGCC+TGG | + | chr5.4:20137354-20137373 | None:intergenic | 35.0% |
| !!! | CACTACCTAGTTTTGCTATT+AGG | - | chr5.4:20137785-20137804 | MS.gene23909:CDS | 35.0% |
| !!! | CGCCAAGAAAGTGTTTTAAA+AGG | + | chr5.4:20137359-20137378 | None:intergenic | 35.0% |
| !!! | GGCCTTTTAAAACACTTTCT+TGG | - | chr5.4:20137354-20137373 | MS.gene23909:intron | 35.0% |
| AAAATGAGGTGCGGTAATTG+TGG | - | chr5.4:20138813-20138832 | MS.gene23909:intron | 40.0% | |
| AAGGGAATGGACATATTGCA+AGG | + | chr5.4:20137982-20138001 | None:intergenic | 40.0% | |
| ACAACAACGGTTTATTCACG+AGG | - | chr5.4:20135976-20135995 | MS.gene23909:intron | 40.0% | |
| ACAACACGATTCACACCATA+AGG | + | chr5.4:20136884-20136903 | None:intergenic | 40.0% | |
| ACTGGACTAACAACAACATG+TGG | - | chr5.4:20139224-20139243 | MS.gene23909:CDS | 40.0% | |
| AGCCATAACAACATATGTGG+TGG | - | chr5.4:20136180-20136199 | MS.gene23909:intron | 40.0% | |
| AGTTAATGAGGAAATCCCAC+AGG | + | chr5.4:20138497-20138516 | None:intergenic | 40.0% | |
| ATCTGCATGTGTGGCAAATA+TGG | - | chr5.4:20137864-20137883 | MS.gene23909:CDS | 40.0% | |
| ATGTGAAACACCCTGTATAG+AGG | - | chr5.4:20137458-20137477 | MS.gene23909:intron | 40.0% | |
| CAATTGTCAACCATTTCTCG+TGG | + | chr5.4:20138998-20139017 | None:intergenic | 40.0% | |
| CACAATAAGCTATTCCAAGC+AGG | - | chr5.4:20135791-20135810 | MS.gene23909:CDS | 40.0% | |
| CACGAGAAATGGTTGACAAT+TGG | - | chr5.4:20138996-20139015 | MS.gene23909:CDS | 40.0% | |
| CAGATCCATATGGACATTAC+AGG | - | chr5.4:20138877-20138896 | MS.gene23909:intron | 40.0% | |
| CATATAGCAGATAGTGTTGC+GGG | + | chr5.4:20138083-20138102 | None:intergenic | 40.0% | |
| CATGTAAAGGAAGGAAACGT+TGG | - | chr5.4:20137285-20137304 | MS.gene23909:CDS | 40.0% | |
| CCATACCTGTAATGTCCATA+TGG | + | chr5.4:20138885-20138904 | None:intergenic | 40.0% | |
| CCATATGGACATTACAGGTA+TGG | - | chr5.4:20138882-20138901 | MS.gene23909:intron | 40.0% | |
| CTCCACCACATATGTTGTTA+TGG | + | chr5.4:20136185-20136204 | None:intergenic | 40.0% | |
| CTCGTTTAAAGGGGAATCAA+AGG | - | chr5.4:20138679-20138698 | MS.gene23909:intron | 40.0% | |
| CTGGAGGTTGTAACAAAATG+AGG | - | chr5.4:20138799-20138818 | MS.gene23909:intron | 40.0% | |
| CTTGACTCATCAGATCCATA+TGG | - | chr5.4:20138867-20138886 | MS.gene23909:intron | 40.0% | |
| GAAAAATACCATTGCGCTCA+TGG | - | chr5.4:20136275-20136294 | MS.gene23909:intron | 40.0% | |
| GAAATCGCCATACCACAAAA+AGG | + | chr5.4:20138774-20138793 | None:intergenic | 40.0% | |
| GCAGGAAGTGATTTACAGTT+GGG | - | chr5.4:20136796-20136815 | MS.gene23909:intron | 40.0% | |
| GGTTGTAACAAAATGAGGTG+CGG | - | chr5.4:20138804-20138823 | MS.gene23909:intron | 40.0% | |
| TACAATCTCTGTTAAGTGGC+TGG | - | chr5.4:20136712-20136731 | MS.gene23909:intron | 40.0% | |
| TAGAAGTGATGACATGTGCT+AGG | - | chr5.4:20135855-20135874 | MS.gene23909:intron | 40.0% | |
| TCAAACATGATTGGCATAGC+TGG | + | chr5.4:20138180-20138199 | None:intergenic | 40.0% | |
| TGAAATAGGCATTACTGCCA+AGG | - | chr5.4:20136550-20136569 | MS.gene23909:intron | 40.0% | |
| TGAATTGTACCCACGAGAAA+TGG | - | chr5.4:20138985-20139004 | MS.gene23909:CDS | 40.0% | |
| TGATCAATTGCAGCAAGATG+AGG | - | chr5.4:20135556-20135575 | MS.gene23909:intron | 40.0% | |
| TGTCAAAGTACATGTCTCTG+TGG | + | chr5.4:20138574-20138593 | None:intergenic | 40.0% | |
| TGTGTGTTTGGATTCCCATT+TGG | + | chr5.4:20138273-20138292 | None:intergenic | 40.0% | |
| TGTTGACATCAACAACCTCA+GGG | + | chr5.4:20135358-20135377 | None:intergenic | 40.0% | |
| TGTTTCTTCACCTAACTCTG+CGG | - | chr5.4:20135313-20135332 | MS.gene23909:intron | 40.0% | |
| TTATGGTGTGAATCGTGTTG+TGG | - | chr5.4:20136883-20136902 | MS.gene23909:intron | 40.0% | |
| TTCAGCCTTGATACATGGAA+AGG | - | chr5.4:20136374-20136393 | MS.gene23909:intron | 40.0% | |
| ! | ACGTTTTCAGCCTTGATACA+TGG | - | chr5.4:20136369-20136388 | MS.gene23909:intron | 40.0% |
| ! | ATACAGGGTGTTTCACATCT+CGG | + | chr5.4:20137456-20137475 | None:intergenic | 40.0% |
| ! | CATTGATTGTGATCTCTTCC+TGG | + | chr5.4:20135538-20135557 | None:intergenic | 40.0% |
| ! | TGTTTTGCAGTTACTTGTGG+TGG | - | chr5.4:20136328-20136347 | MS.gene23909:intron | 40.0% |
| !! | AATTTGATTTGAGCAAGCGC+GGG | + | chr5.4:20137115-20137134 | None:intergenic | 40.0% |
| !! | GAGACTTGTGGTTCTAGTAT+TGG | - | chr5.4:20139253-20139272 | MS.gene23909:CDS | 40.0% |
| !! | GTTCGGATTTGTTAACGTAG+CGG | + | chr5.4:20135289-20135308 | None:intergenic | 40.0% |
| !! | TTCTTTGGTCTTGCTTGAAC+TGG | + | chr5.4:20135420-20135439 | None:intergenic | 40.0% |
| !!! | AAGTGTTTTAAAAGGCCTGG+TGG | + | chr5.4:20137351-20137370 | None:intergenic | 40.0% |
| AAAACACTTTCTTGGCGACG+AGG | - | chr5.4:20137362-20137381 | MS.gene23909:intron | 45.0% | |
| AACCTAACTGCTCTGTTCTC+AGG | + | chr5.4:20136030-20136049 | None:intergenic | 45.0% | |
| AAGCAGCTCCTATGGATTTC+TGG | + | chr5.4:20137618-20137637 | None:intergenic | 45.0% | |
| AATCCCACAGGTACAACTAG+TGG | + | chr5.4:20138485-20138504 | None:intergenic | 45.0% | |
| ACATGTCTCTGTGGACATCA+TGG | + | chr5.4:20138565-20138584 | None:intergenic | 45.0% | |
| AGTCATTACCATGAGCGCAA+TGG | + | chr5.4:20136286-20136305 | None:intergenic | 45.0% | |
| ATGTGGAACGTTGAGACTTG+TGG | - | chr5.4:20139241-20139260 | MS.gene23909:CDS | 45.0% | |
| CGACGAGGAATACAAACGTT+GGG | - | chr5.4:20137377-20137396 | MS.gene23909:intron | 45.0% | |
| CTGGATTTCGTCCTTGTCAT+AGG | - | chr5.4:20138641-20138660 | MS.gene23909:intron | 45.0% | |
| CTGTTGACATCAACAACCTC+AGG | + | chr5.4:20135359-20135378 | None:intergenic | 45.0% | |
| GATCCACTAGTTGTACCTGT+GGG | - | chr5.4:20138479-20138498 | MS.gene23909:intron | 45.0% | |
| GCAGACCTTTCCATGTATCA+AGG | + | chr5.4:20136382-20136401 | None:intergenic | 45.0% | |
| GGCAGGAAGTGATTTACAGT+TGG | - | chr5.4:20136795-20136814 | MS.gene23909:intron | 45.0% | |
| GTTGACATCAACAACCTCAG+GGG | + | chr5.4:20135357-20135376 | None:intergenic | 45.0% | |
| TCATGCATGCAATGCCAACA+TGG | + | chr5.4:20137551-20137570 | None:intergenic | 45.0% | |
| TGAAACACCCTGTATAGAGG+AGG | - | chr5.4:20137461-20137480 | MS.gene23909:intron | 45.0% | |
| TGATCCACTAGTTGTACCTG+TGG | - | chr5.4:20138478-20138497 | MS.gene23909:intron | 45.0% | |
| TGGTCTTCCTCCTCTATACA+GGG | + | chr5.4:20137471-20137490 | None:intergenic | 45.0% | |
| ! | AACGTAGCGGAGTTTCGATT+TGG | + | chr5.4:20135276-20135295 | None:intergenic | 45.0% |
| ! | ACCACAAAAAGGGCACAACT+TGG | + | chr5.4:20138763-20138782 | None:intergenic | 45.0% |
| ! | AGTCAAGTGCTTTGTTGCAG+AGG | + | chr5.4:20138854-20138873 | None:intergenic | 45.0% |
| ! | GTCCGCTACTCCAGTTTTTA+GGG | - | chr5.4:20137816-20137835 | MS.gene23909:CDS | 45.0% |
| ! | GTTGTGCCCTTTTTGTGGTA+TGG | - | chr5.4:20138764-20138783 | MS.gene23909:intron | 45.0% |
| ! | TACAGGGTGTTTCACATCTC+GGG | + | chr5.4:20137455-20137474 | None:intergenic | 45.0% |
| ! | TCCAAGTTGTGCCCTTTTTG+TGG | - | chr5.4:20138759-20138778 | MS.gene23909:intron | 45.0% |
| ! | TGGTGACTCGGATATGACTT+AGG | + | chr5.4:20136680-20136699 | None:intergenic | 45.0% |
| ! | TGTCCGCTACTCCAGTTTTT+AGG | - | chr5.4:20137815-20137834 | MS.gene23909:CDS | 45.0% |
| ! | TTGGTCTTCCTCCTCTATAC+AGG | + | chr5.4:20137472-20137491 | None:intergenic | 45.0% |
| !! | AAGAGCGGTGTTATCAGTAG+CGG | + | chr5.4:20138144-20138163 | None:intergenic | 45.0% |
| !! | AATATAGGCGGTTGGTGACT+CGG | + | chr5.4:20136692-20136711 | None:intergenic | 45.0% |
| !! | ATTTGTTGTACTTCCTGGCG+AGG | + | chr5.4:20139037-20139056 | None:intergenic | 45.0% |
| !! | GAAAGGTCTGCGTTGTTTTC+AGG | - | chr5.4:20136391-20136410 | MS.gene23909:intron | 45.0% |
| !! | GTGTTATCAGTAGCGGATTG+CGG | + | chr5.4:20138137-20138156 | None:intergenic | 45.0% |
| !! | TAGCGGATTGCGGAAAATTG+AGG | + | chr5.4:20138127-20138146 | None:intergenic | 45.0% |
| !! | TCCGCTACTCCAGTTTTTAG+GGG | - | chr5.4:20137817-20137836 | MS.gene23909:CDS | 45.0% |
| !!! | ATTTTGGGCACTGAGCATGT+TGG | + | chr5.4:20137491-20137510 | None:intergenic | 45.0% |
| !! | AGTTATTAAATAAAAAAAAT+TGG | + | chr5.4:20137176-20137195 | None:intergenic | 5.0% |
| !!! | TTTTTCTTTTATAAAAAAAA+AGG | + | chr5.4:20137890-20137909 | None:intergenic | 5.0% |
| AGCACGAATAAATCCTCGCC+AGG | - | chr5.4:20139021-20139040 | MS.gene23909:CDS | 50.0% | |
| ATGGACAGAACAACAAGGGC+AGG | - | chr5.4:20136778-20136797 | MS.gene23909:intron | 50.0% | |
| ATGGCGATTTCTCGAACTGG+AGG | - | chr5.4:20138783-20138802 | MS.gene23909:intron | 50.0% | |
| GACTTATTTCAACCGCCACG+TGG | - | chr5.4:20138045-20138064 | MS.gene23909:intron | 50.0% | |
| GAGCAGAGTGGTATGGTACA+TGG | + | chr5.4:20136122-20136141 | None:intergenic | 50.0% | |
| GCATGGTAACCGGACGAATT+CGG | + | chr5.4:20137220-20137239 | None:intergenic | 50.0% | |
| GCCCCTAAAAACTGGAGTAG+CGG | + | chr5.4:20137821-20137840 | None:intergenic | 50.0% | |
| GCGACGAGGAATACAAACGT+TGG | - | chr5.4:20137376-20137395 | MS.gene23909:intron | 50.0% | |
| GCGCCACTATTTGACATCAC+TGG | + | chr5.4:20137722-20137741 | None:intergenic | 50.0% | |
| GCTGAACTCTTTCACCTTCG+TGG | - | chr5.4:20139061-20139080 | MS.gene23909:CDS | 50.0% | |
| GGTATGGCGATTTCTCGAAC+TGG | - | chr5.4:20138780-20138799 | MS.gene23909:intron | 50.0% | |
| GTCCTGAGAACAGAGCAGTT+AGG | - | chr5.4:20136025-20136044 | MS.gene23909:intron | 50.0% | |
| GTGTCAGTGTTAGTCCTGCT+TGG | + | chr5.4:20135808-20135827 | None:intergenic | 50.0% | |
| TCAACAACCTCAGGGGAAAC+TGG | + | chr5.4:20135350-20135369 | None:intergenic | 50.0% | |
| TGAACTGGCCACGTCATCAA+CGG | + | chr5.4:20135405-20135424 | None:intergenic | 50.0% | |
| TGAAGAACCAGTTTCCCCTG+AGG | - | chr5.4:20135340-20135359 | MS.gene23909:intron | 50.0% | |
| TGCAAGGAGATGATTCCACC+AGG | - | chr5.4:20137333-20137352 | MS.gene23909:intron | 50.0% | |
| TGCATGCAATGCCAACATGG+CGG | + | chr5.4:20137548-20137567 | None:intergenic | 50.0% | |
| TTCTTCACCTAACTCTGCGG+CGG | - | chr5.4:20135316-20135335 | MS.gene23909:intron | 50.0% | |
| !! | CAACAGGTACCGAATTCGTC+CGG | - | chr5.4:20137208-20137227 | MS.gene23909:CDS | 50.0% |
| !! | GAACAACACCGTTGATGACG+TGG | - | chr5.4:20135394-20135413 | MS.gene23909:intron | 50.0% |
| CGGACGAATTCGGTACCTGT+TGG | + | chr5.4:20137210-20137229 | None:intergenic | 55.0% | |
| CTGCTCTGTTCTCAGGACAC+CGG | + | chr5.4:20136023-20136042 | None:intergenic | 55.0% | |
| TAGGACAAGCTGAGCCACGA+AGG | + | chr5.4:20139078-20139097 | None:intergenic | 55.0% | |
| TCTTCAACCGCCGCAGAGTT+AGG | + | chr5.4:20135326-20135345 | None:intergenic | 55.0% | |
| TGAATAGCGAAGCCACGTGG+CGG | + | chr5.4:20138060-20138079 | None:intergenic | 55.0% | |
| CGCAGTGGAGCAGAGTGGTA+TGG | + | chr5.4:20136129-20136148 | None:intergenic | 60.0% | |
| GCACGCGTGGTTTCGGGAAT+TGG | - | chr5.4:20136908-20136927 | MS.gene23909:intron | 60.0% | |
| GGGTGAATAGCGAAGCCACG+TGG | + | chr5.4:20138063-20138082 | None:intergenic | 60.0% | |
| TAGAGCGCAGTGGAGCAGAG+TGG | + | chr5.4:20136134-20136153 | None:intergenic | 60.0% | |
| TGTGGACGCACGCGTGGTTT+CGG | - | chr5.4:20136901-20136920 | MS.gene23909:intron | 60.0% | |
| CATGGCGGCGTTCCCTGCAA+AGG | + | chr5.4:20137533-20137552 | None:intergenic | 65.0% | |
| GGACAGACGCTAGAGCGCAG+TGG | + | chr5.4:20136144-20136163 | None:intergenic | 65.0% | |
| GTGGACGCACGCGTGGTTTC+GGG | - | chr5.4:20136902-20136921 | MS.gene23909:intron | 65.0% | |
| TCGTGTTGTGGACGCACGCG+TGG | - | chr5.4:20136895-20136914 | MS.gene23909:intron | 65.0% | |
| TGCAGGGAACGCCGCCATGT+TGG | - | chr5.4:20137534-20137553 | MS.gene23909:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 20135224 | 20139306 | 20135224 | ID=MS.gene23909 |
| chr5.4 | mRNA | 20135224 | 20139306 | 20135224 | ID=MS.gene23909.t1;Parent=MS.gene23909 |
| chr5.4 | exon | 20138953 | 20139306 | 20138953 | ID=MS.gene23909.t1.exon1;Parent=MS.gene23909.t1 |
| chr5.4 | CDS | 20138953 | 20139306 | 20138953 | ID=cds.MS.gene23909.t1;Parent=MS.gene23909.t1 |
| chr5.4 | exon | 20138118 | 20138192 | 20138118 | ID=MS.gene23909.t1.exon2;Parent=MS.gene23909.t1 |
| chr5.4 | CDS | 20138118 | 20138192 | 20138118 | ID=cds.MS.gene23909.t1;Parent=MS.gene23909.t1 |
| chr5.4 | exon | 20137490 | 20138006 | 20137490 | ID=MS.gene23909.t1.exon3;Parent=MS.gene23909.t1 |
| chr5.4 | CDS | 20137490 | 20138006 | 20137490 | ID=cds.MS.gene23909.t1;Parent=MS.gene23909.t1 |
| chr5.4 | exon | 20136931 | 20137316 | 20136931 | ID=MS.gene23909.t1.exon4;Parent=MS.gene23909.t1 |
| chr5.4 | CDS | 20136931 | 20137316 | 20136931 | ID=cds.MS.gene23909.t1;Parent=MS.gene23909.t1 |
| chr5.4 | exon | 20135632 | 20135867 | 20135632 | ID=MS.gene23909.t1.exon5;Parent=MS.gene23909.t1 |
| chr5.4 | CDS | 20135632 | 20135867 | 20135632 | ID=cds.MS.gene23909.t1;Parent=MS.gene23909.t1 |
| chr5.4 | exon | 20135224 | 20135308 | 20135224 | ID=MS.gene23909.t1.exon6;Parent=MS.gene23909.t1 |
| chr5.4 | CDS | 20135224 | 20135308 | 20135224 | ID=cds.MS.gene23909.t1;Parent=MS.gene23909.t1 |
| Gene Sequence |
| Protein sequence |
