Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24041.t1 | XP_013468357.1 | 98.8 | 502 | 6 | 0 | 1 | 502 | 1 | 502 | 1.10E-301 | 1045 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24041.t1 | A0A072VK79 | 98.8 | 502 | 6 | 0 | 1 | 502 | 1 | 502 | 7.9e-302 | 1045.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050654 | MS.gene24041 | 0.801057 | 1.08E-48 | -1.69E-46 |
| MS.gene050941 | MS.gene24041 | 0.826946 | 2.05E-54 | -1.69E-46 |
| MS.gene051122 | MS.gene24041 | 0.813362 | 2.66E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24041.t1 | MTR_1g069055 | 98.805 | 502 | 6 | 0 | 1 | 502 | 1 | 502 | 0.0 | 1027 |
| MS.gene24041.t1 | MTR_1g069065 | 77.907 | 516 | 82 | 8 | 12 | 502 | 1 | 509 | 0.0 | 787 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24041.t1 | AT2G37570 | 75.794 | 504 | 99 | 11 | 12 | 502 | 1 | 494 | 0.0 | 740 |
| MS.gene24041.t1 | AT5G02480 | 64.591 | 514 | 144 | 15 | 1 | 487 | 1 | 503 | 0.0 | 636 |
| MS.gene24041.t1 | AT3G12570 | 65.594 | 497 | 150 | 11 | 1 | 488 | 1 | 485 | 0.0 | 631 |
| MS.gene24041.t1 | AT3G12570 | 65.594 | 497 | 150 | 11 | 1 | 488 | 1 | 485 | 0.0 | 631 |
| MS.gene24041.t1 | AT3G12570 | 65.594 | 497 | 150 | 11 | 1 | 488 | 1 | 485 | 0.0 | 631 |
| MS.gene24041.t1 | AT3G12570 | 65.594 | 497 | 150 | 11 | 1 | 488 | 1 | 485 | 0.0 | 631 |
| MS.gene24041.t1 | AT2G37570 | 77.933 | 358 | 67 | 5 | 150 | 502 | 1 | 351 | 0.0 | 549 |
Find 133 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGATCCTTGTGATATTT+TGG | 0.133966 | 1.3:-48321521 | MS.gene24041:CDS |
| ATTCTTCATCATTCCCATTA+AGG | 0.195571 | 1.3:+48320750 | None:intergenic |
| ATCTGATCGGATTCCGGATT+TGG | 0.201855 | 1.3:-48320705 | MS.gene24041:CDS |
| GATGACAGCAATGGTGTTTC+GGG | 0.210690 | 1.3:-48321328 | MS.gene24041:CDS |
| GAGCATTTCTTCACCGCTTT+CGG | 0.286327 | 1.3:+48321445 | None:intergenic |
| AAGAAGCTCCTCAATGAATC+TGG | 0.311143 | 1.3:-48320854 | MS.gene24041:CDS |
| CGAGGCGTGTTGATAGCATT+TGG | 0.312491 | 1.3:-48321423 | MS.gene24041:CDS |
| CGATATCAATTTACCCCTTT+CGG | 0.323332 | 1.3:-48321560 | MS.gene24041:CDS |
| AGCTTCTTTGAGTGAGGAAT+TGG | 0.323904 | 1.3:+48320869 | None:intergenic |
| GGATGACAGCAATGGTGTTT+CGG | 0.325073 | 1.3:-48321329 | MS.gene24041:CDS |
| GAGGCGTGTTGATAGCATTT+GGG | 0.329733 | 1.3:-48321422 | MS.gene24041:CDS |
| TCCTCCATCTGATCGGATTC+CGG | 0.340719 | 1.3:-48320711 | MS.gene24041:CDS |
| GCTTCAATATTGGCATCTTC+AGG | 0.342424 | 1.3:+48320356 | None:intergenic |
| TCCTCAGAGCACTGCCCTCC+TGG | 0.349557 | 1.3:-48320416 | MS.gene24041:CDS |
| GGAATTGGAGCACTCTTGAT+TGG | 0.366866 | 1.3:+48320884 | None:intergenic |
| GAGAGGCCGGAGAATGCTTT+GGG | 0.374341 | 1.3:-48321226 | MS.gene24041:CDS |
| CGAAAGGGGTAAATTGATAT+CGG | 0.383055 | 1.3:+48321561 | None:intergenic |
| GTCTGCCTTCGTCCTAATCT+TGG | 0.385991 | 1.3:-48320254 | MS.gene24041:CDS |
| GGAGAGGCCGGAGAATGCTT+TGG | 0.404473 | 1.3:-48321227 | MS.gene24041:CDS |
| CCGAAGTCGCTTGCTTCGGC+CGG | 0.412685 | 1.3:+48320959 | None:intergenic |
| TTCCTAGTGTCAAAGTTACT+TGG | 0.423216 | 1.3:-48320541 | MS.gene24041:CDS |
| CTAATCTTTCAAGTCTTGAC+AGG | 0.426639 | 1.3:-48321036 | MS.gene24041:CDS |
| AGTCGAAGGCTAAAGTTACT+AGG | 0.430161 | 1.3:-48321351 | MS.gene24041:CDS |
| TCTCACTTGTTGTCTCTCAA+TGG | 0.432740 | 1.3:-48321689 | MS.gene24041:CDS |
| AGGATCAGTGCTTGAGATCA+TGG | 0.440557 | 1.3:-48320318 | MS.gene24041:CDS |
| ATCATAGTAAGCTTCAATAT+TGG | 0.441176 | 1.3:+48320346 | None:intergenic |
| CTAGGGTGCATTTCCAAATC+CGG | 0.444005 | 1.3:+48320692 | None:intergenic |
| CCCTTTCGGTGCCGCAGCCG+TGG | 0.445719 | 1.3:-48321546 | MS.gene24041:CDS |
| TCAGATCCAGGACGAAGTTT+AGG | 0.445753 | 1.3:+48320293 | None:intergenic |
| GGATGCAAAGGAAGCAGTAC+AGG | 0.445854 | 1.3:-48321108 | MS.gene24041:CDS |
| TCTCACTCATGGTATCATAA+AGG | 0.449857 | 1.3:-48320510 | MS.gene24041:CDS |
| TTGATAGCATTTGGGGTGCT+TGG | 0.452574 | 1.3:-48321414 | MS.gene24041:CDS |
| TGTTTCGGGGTTTGATAAAA+CGG | 0.459919 | 1.3:-48321314 | MS.gene24041:CDS |
| CCACGGCTGCGGCACCGAAA+GGG | 0.460746 | 1.3:+48321546 | None:intergenic |
| CTGTCAAGACTTGAAAGATT+AGG | 0.468404 | 1.3:+48321037 | None:intergenic |
| TGAGCCGAAGTCGCTTGCTT+CGG | 0.472282 | 1.3:+48320955 | None:intergenic |
| TCAAGCTCAAAATCTGTGTT+CGG | 0.478027 | 1.3:+48320920 | None:intergenic |
| AATATTGAAGCTTACTATGA+TGG | 0.483238 | 1.3:-48320344 | MS.gene24041:CDS |
| AGATTTGAATTTCATAATCC+CGG | 0.485916 | 1.3:-48320978 | MS.gene24041:CDS |
| CCGGCCGAAGCAAGCGACTT+CGG | 0.486024 | 1.3:-48320959 | MS.gene24041:CDS |
| TCCTAATCTTGGTGGCAACC+TGG | 0.487040 | 1.3:-48320243 | MS.gene24041:CDS |
| TCCAGGTTGCCACCAAGATT+AGG | 0.488112 | 1.3:+48320242 | None:intergenic |
| AAGCAAGCGACTTCGGCTCA+TGG | 0.488234 | 1.3:-48320952 | MS.gene24041:CDS |
| GCACTCTTGATTGGAGGAGG+TGG | 0.489975 | 1.3:+48320893 | None:intergenic |
| CCCCTATCAGTAGCAAGAAA+AGG | 0.490878 | 1.3:-48320784 | MS.gene24041:CDS |
| CGAAGTCGCTTGCTTCGGCC+GGG | 0.491525 | 1.3:+48320960 | None:intergenic |
| TTCAACCAGTGTTGTTCACT+AGG | 0.493147 | 1.3:+48320674 | None:intergenic |
| ATGATCTCAAGCACTGATCC+TGG | 0.497389 | 1.3:+48320320 | None:intergenic |
| GGATTATGAAATTCAAATCT+CGG | 0.507468 | 1.3:+48320981 | None:intergenic |
| TCCACGGCTGCGGCACCGAA+AGG | 0.508880 | 1.3:+48321545 | None:intergenic |
| AATTTATCAAGAGAAATGAT+AGG | 0.515148 | 1.3:-48320460 | MS.gene24041:CDS |
| TGCCTTCGTCCTAATCTTGG+TGG | 0.517512 | 1.3:-48320251 | MS.gene24041:CDS |
| CTGTTAATCCTCCATCTGAT+CGG | 0.518035 | 1.3:-48320718 | MS.gene24041:CDS |
| CTAGTGTCAAAGTTACTTGG+AGG | 0.520079 | 1.3:-48320538 | MS.gene24041:CDS |
| AGATTTAGAGATGAATAGAC+AGG | 0.522611 | 1.3:-48321602 | MS.gene24041:CDS |
| GATGTTGGTCTTGGTACTCA+AGG | 0.523677 | 1.3:-48321499 | MS.gene24041:CDS |
| TCCATTGACAAAAGTGTTGA+AGG | 0.524772 | 1.3:+48321652 | None:intergenic |
| ACTTCATGCTCTTCAGATCC+AGG | 0.524848 | 1.3:+48320281 | None:intergenic |
| ATGGTGCCTAAACTTCGTCC+TGG | 0.529802 | 1.3:-48320299 | MS.gene24041:CDS |
| GAAAGGGGTAAATTGATATC+GGG | 0.534951 | 1.3:+48321562 | None:intergenic |
| AGAAGCTCCTCAATGAATCT+GGG | 0.536327 | 1.3:-48320853 | MS.gene24041:CDS |
| GTTTCCTTTCAGTGTTGACA+AGG | 0.536419 | 1.3:-48321149 | MS.gene24041:CDS |
| ATTTCGCGAACAAATTCTCC+AGG | 0.539440 | 1.3:+48320398 | None:intergenic |
| CTCCAAGTAACTTTGACACT+AGG | 0.539756 | 1.3:+48320539 | None:intergenic |
| ATTGGAGCACTCTTGATTGG+AGG | 0.540765 | 1.3:+48320887 | None:intergenic |
| TTGTCAACACTGAAAGGAAA+CGG | 0.540825 | 1.3:+48321151 | None:intergenic |
| ACAGGGATGAGCAGAAGAAG+TGG | 0.546941 | 1.3:-48321018 | MS.gene24041:CDS |
| GTCGAAGGCTAAAGTTACTA+GGG | 0.549025 | 1.3:-48321350 | MS.gene24041:CDS |
| CACGGCTGCGGCACCGAAAG+GGG | 0.553443 | 1.3:+48321547 | None:intergenic |
| GGAGCACTCTTGATTGGAGG+AGG | 0.554830 | 1.3:+48320890 | None:intergenic |
| TTGAGGAGCTTCTTTGAGTG+AGG | 0.556306 | 1.3:+48320863 | None:intergenic |
| AATCTTGGTGGCAACCTGGA+TGG | 0.556381 | 1.3:-48320239 | MS.gene24041:CDS |
| ATCTTCCCCAAAGCATTCTC+CGG | 0.557166 | 1.3:+48321220 | None:intergenic |
| TCAGGAATACGAGTTAAAAG+AGG | 0.557588 | 1.3:+48320374 | None:intergenic |
| ACATGAGATCATTACCATCC+AGG | 0.560171 | 1.3:+48320225 | None:intergenic |
| ACACTAGGAAGATCCACAAA+AGG | 0.561453 | 1.3:+48320554 | None:intergenic |
| GGAGGGCAGTGCTCTGAGGA+TGG | 0.561491 | 1.3:+48320419 | None:intergenic |
| TTCGATCTCATAGGATGCAA+AGG | 0.561754 | 1.3:-48321120 | MS.gene24041:CDS |
| AAATCCGGAATCCGATCAGA+TGG | 0.563017 | 1.3:+48320707 | None:intergenic |
| GGATCAGAATTCCACGGCTG+CGG | 0.563668 | 1.3:+48321535 | None:intergenic |
| AAACCCTTGTCAACACTGAA+AGG | 0.565278 | 1.3:+48321145 | None:intergenic |
| CAGGAATACGAGTTAAAAGA+GGG | 0.571303 | 1.3:+48320375 | None:intergenic |
| TTTGCTTAACCTTCCGAAAG+CGG | 0.572823 | 1.3:-48321458 | MS.gene24041:CDS |
| ATTTCTTCACCGCTTTCGGA+AGG | 0.577148 | 1.3:+48321449 | None:intergenic |
| CGCGAACAAATTCTCCAGGA+GGG | 0.578586 | 1.3:+48320402 | None:intergenic |
| TCAACCAGTGTTGTTCACTA+GGG | 0.580882 | 1.3:+48320675 | None:intergenic |
| AAGGAAACGGACGTTCCCCT+TGG | 0.581022 | 1.3:+48321164 | None:intergenic |
| AATTCAGCCCAGATTCATTG+AGG | 0.581944 | 1.3:+48320846 | None:intergenic |
| GAATGATGAAGAATGTTACT+TGG | 0.584179 | 1.3:-48320741 | MS.gene24041:CDS |
| AGGCGTGTTGATAGCATTTG+GGG | 0.585611 | 1.3:-48321421 | MS.gene24041:CDS |
| TCAAATCCTCAGTGTCTGCA+TGG | 0.586490 | 1.3:-48321079 | MS.gene24041:CDS |
| ACAATTTATGAGGATGAGCA+AGG | 0.589192 | 1.3:-48320599 | MS.gene24041:CDS |
| TGGAGGAATACTCTCACTCA+TGG | 0.595793 | 1.3:-48320521 | MS.gene24041:CDS |
| TGAACGGACATTCTCGCCAA+GGG | 0.598697 | 1.3:-48321180 | MS.gene24041:CDS |
| TCATATGCCTAACGGTGATG+CGG | 0.608788 | 1.3:-48320816 | MS.gene24041:CDS |
| GATTAGGACGAAGGCAGACA+CGG | 0.610183 | 1.3:+48320258 | None:intergenic |
| TTGTCTACTCATATGCCTAA+CGG | 0.610882 | 1.3:-48320824 | MS.gene24041:CDS |
| AAGTCAGCCGCATCACCGTT+AGG | 0.613743 | 1.3:+48320809 | None:intergenic |
| GATGCAAAGGAAGCAGTACA+GGG | 0.614610 | 1.3:-48321107 | MS.gene24041:CDS |
| AAGAAGTGGATGGAACTCAC+TGG | 0.615287 | 1.3:-48321004 | MS.gene24041:CDS |
| CTTTGGGGAAGATGCAGCTG+AGG | 0.615425 | 1.3:-48321210 | MS.gene24041:CDS |
| GATGAAGAATGTCTGTGGAC+CGG | 0.615475 | 1.3:-48320636 | MS.gene24041:CDS |
| GGATGAGCAGAAGAAGTGGA+TGG | 0.618142 | 1.3:-48321014 | MS.gene24041:CDS |
| TTTCCTTTCAGTGTTGACAA+GGG | 0.621299 | 1.3:-48321148 | MS.gene24041:CDS |
| CCATTGACAAAAGTGTTGAA+GGG | 0.623640 | 1.3:+48321653 | None:intergenic |
| TCCAGGAGGGCAGTGCTCTG+AGG | 0.623691 | 1.3:+48320415 | None:intergenic |
| ATTTGGAAAACATGTACATG+TGG | 0.624344 | 1.3:-48321258 | MS.gene24041:CDS |
| ATGACAGCAATGGTGTTTCG+GGG | 0.628591 | 1.3:-48321327 | MS.gene24041:CDS |
| GAAGCTTACTATGATGGACC+AGG | 0.634791 | 1.3:-48320338 | MS.gene24041:CDS |
| ATGAACGGACATTCTCGCCA+AGG | 0.639384 | 1.3:-48321181 | MS.gene24041:CDS |
| GTTGGTCTTGGTACTCAAGG+TGG | 0.640587 | 1.3:-48321496 | MS.gene24041:CDS |
| TATCAGTAGCAAGAAAAGGA+AGG | 0.643198 | 1.3:-48320780 | MS.gene24041:CDS |
| TGCCACCAAGATTAGGACGA+AGG | 0.643544 | 1.3:+48320249 | None:intergenic |
| TGAAGAGGTAATTCAATGGG+TGG | 0.644069 | 1.3:-48321718 | None:intergenic |
| TAATCTTTCAAGTCTTGACA+GGG | 0.648340 | 1.3:-48321035 | MS.gene24041:CDS |
| AGTGTTGCTTGAAAAGTCGA+AGG | 0.649833 | 1.3:-48321365 | MS.gene24041:CDS |
| TCCGGAATCCGATCAGATGG+AGG | 0.649849 | 1.3:+48320710 | None:intergenic |
| GTTACTAGGGATGACAGCAA+TGG | 0.662440 | 1.3:-48321337 | MS.gene24041:CDS |
| TCACAAGGATCAGAATTCCA+CGG | 0.663000 | 1.3:+48321529 | None:intergenic |
| CCAACATCCAAAATATCACA+AGG | 0.665335 | 1.3:+48321514 | None:intergenic |
| TGCACCCTAGTGAACAACAC+TGG | 0.665394 | 1.3:-48320679 | MS.gene24041:CDS |
| AGGGGTAAATTGATATCGGG+CGG | 0.670799 | 1.3:+48321565 | None:intergenic |
| TCGCGAACAAATTCTCCAGG+AGG | 0.671962 | 1.3:+48320401 | None:intergenic |
| AGAGGCCGGAGAATGCTTTG+GGG | 0.673562 | 1.3:-48321225 | MS.gene24041:CDS |
| GAACGGACATTCTCGCCAAG+GGG | 0.681600 | 1.3:-48321179 | MS.gene24041:CDS |
| CAAGCGACTTCGGCTCATGG+AGG | 0.693168 | 1.3:-48320949 | MS.gene24041:CDS |
| TTTGGAAAACATGTACATGT+GGG | 0.696963 | 1.3:-48321257 | MS.gene24041:CDS |
| AAGCGGTGAAGAAATGCTCG+AGG | 0.699893 | 1.3:-48321441 | MS.gene24041:CDS |
| CAGCTGAGGAGTTACATGAA+CGG | 0.706577 | 1.3:-48321196 | MS.gene24041:CDS |
| ATGCAAAGGAAGCAGTACAG+GGG | 0.725658 | 1.3:-48321106 | MS.gene24041:CDS |
| TCAATACCATGCAGACACTG+AGG | 0.729936 | 1.3:+48321073 | None:intergenic |
| TTGACAAAAGTGTTGAAGGG+TGG | 0.732305 | 1.3:+48321656 | None:intergenic |
| GGGGTGATGAAGAATGTCTG+TGG | 0.757818 | 1.3:-48320641 | MS.gene24041:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTATCAAGAGAAATGAT+AGG | - | chr1.3:48321460-48321479 | MS.gene24041:CDS | 20.0% |
| !!! | TCTGAATAATGATGTTTTTA+TGG | - | chr1.3:48320630-48320649 | MS.gene24041:CDS | 20.0% |
| ! | AATATTGAAGCTTACTATGA+TGG | - | chr1.3:48321576-48321595 | MS.gene24041:CDS | 25.0% |
| ! | AGATTTGAATTTCATAATCC+CGG | - | chr1.3:48320942-48320961 | MS.gene24041:CDS | 25.0% |
| ! | ATCATAGTAAGCTTCAATAT+TGG | + | chr1.3:48321577-48321596 | None:intergenic | 25.0% |
| ! | GGATTATGAAATTCAAATCT+CGG | + | chr1.3:48320942-48320961 | None:intergenic | 25.0% |
| AGATTTAGAGATGAATAGAC+AGG | - | chr1.3:48320318-48320337 | MS.gene24041:CDS | 30.0% | |
| AGCTGCAAAAACAATTTATG+AGG | - | chr1.3:48321311-48321330 | MS.gene24041:CDS | 30.0% | |
| ATTCTTCATCATTCCCATTA+AGG | + | chr1.3:48321173-48321192 | None:intergenic | 30.0% | |
| ATTTGGAAAACATGTACATG+TGG | - | chr1.3:48320662-48320681 | MS.gene24041:CDS | 30.0% | |
| GAATGATGAAGAATGTTACT+TGG | - | chr1.3:48321179-48321198 | MS.gene24041:CDS | 30.0% | |
| TTTGGAAAACATGTACATGT+GGG | - | chr1.3:48320663-48320682 | MS.gene24041:CDS | 30.0% | |
| ! | TAATCTTTCAAGTCTTGACA+GGG | - | chr1.3:48320885-48320904 | MS.gene24041:CDS | 30.0% |
| ! | TTCTGATCCTTGTGATATTT+TGG | - | chr1.3:48320399-48320418 | MS.gene24041:CDS | 30.0% |
| ! | TTTTATGGTTCAGCATGATT+TGG | - | chr1.3:48320645-48320664 | MS.gene24041:CDS | 30.0% |
| ACAATTTATGAGGATGAGCA+AGG | - | chr1.3:48321321-48321340 | MS.gene24041:CDS | 35.0% | |
| CAGGAATACGAGTTAAAAGA+GGG | + | chr1.3:48321548-48321567 | None:intergenic | 35.0% | |
| CCAACATCCAAAATATCACA+AGG | + | chr1.3:48320409-48320428 | None:intergenic | 35.0% | |
| CGAAAGGGGTAAATTGATAT+CGG | + | chr1.3:48320362-48320381 | None:intergenic | 35.0% | |
| CGATATCAATTTACCCCTTT+CGG | - | chr1.3:48320360-48320379 | MS.gene24041:CDS | 35.0% | |
| CTGTCAAGACTTGAAAGATT+AGG | + | chr1.3:48320886-48320905 | None:intergenic | 35.0% | |
| GAAAGGGGTAAATTGATATC+GGG | + | chr1.3:48320361-48320380 | None:intergenic | 35.0% | |
| TATCAGTAGCAAGAAAAGGA+AGG | - | chr1.3:48321140-48321159 | MS.gene24041:CDS | 35.0% | |
| TCAAGCTCAAAATCTGTGTT+CGG | + | chr1.3:48321003-48321022 | None:intergenic | 35.0% | |
| TCAGGAATACGAGTTAAAAG+AGG | + | chr1.3:48321549-48321568 | None:intergenic | 35.0% | |
| TCTCACTCATGGTATCATAA+AGG | - | chr1.3:48321410-48321429 | MS.gene24041:CDS | 35.0% | |
| TGTTTCGGGGTTTGATAAAA+CGG | - | chr1.3:48320606-48320625 | MS.gene24041:CDS | 35.0% | |
| TTCCTAGTGTCAAAGTTACT+TGG | - | chr1.3:48321379-48321398 | MS.gene24041:CDS | 35.0% | |
| TTGTCAACACTGAAAGGAAA+CGG | + | chr1.3:48320772-48320791 | None:intergenic | 35.0% | |
| TTGTCTACTCATATGCCTAA+CGG | - | chr1.3:48321096-48321115 | MS.gene24041:CDS | 35.0% | |
| ! | CATTATCAGTTTGCCTTTTG+TGG | - | chr1.3:48321353-48321372 | MS.gene24041:CDS | 35.0% |
| ! | CTAATCTTTCAAGTCTTGAC+AGG | - | chr1.3:48320884-48320903 | MS.gene24041:CDS | 35.0% |
| ! | TCCTTTTCTTGCTACTGATA+GGG | + | chr1.3:48321140-48321159 | None:intergenic | 35.0% |
| ! | TTCCTTTTCTTGCTACTGAT+AGG | + | chr1.3:48321141-48321160 | None:intergenic | 35.0% |
| !! | ACTGGTTGAATGATTTTAGC+GGG | - | chr1.3:48321259-48321278 | MS.gene24041:CDS | 35.0% |
| !! | AGGAAGGACTTTTTCCTTAA+TGG | - | chr1.3:48321156-48321175 | MS.gene24041:CDS | 35.0% |
| !! | CACTGGTTGAATGATTTTAG+CGG | - | chr1.3:48321258-48321277 | MS.gene24041:CDS | 35.0% |
| !! | CCATTGACAAAAGTGTTGAA+GGG | + | chr1.3:48320270-48320289 | None:intergenic | 35.0% |
| !! | CCTTGTGATATTTTGGATGT+TGG | - | chr1.3:48320406-48320425 | MS.gene24041:CDS | 35.0% |
| !! | GATATTTTGGATGTTGGTCT+TGG | - | chr1.3:48320412-48320431 | MS.gene24041:CDS | 35.0% |
| !! | GGAAGGACTTTTTCCTTAAT+GGG | - | chr1.3:48321157-48321176 | MS.gene24041:CDS | 35.0% |
| !! | TCCATTGACAAAAGTGTTGA+AGG | + | chr1.3:48320271-48320290 | None:intergenic | 35.0% |
| !! | TTTCCTTTCAGTGTTGACAA+GGG | - | chr1.3:48320772-48320791 | MS.gene24041:CDS | 35.0% |
| AAACCCTTGTCAACACTGAA+AGG | + | chr1.3:48320778-48320797 | None:intergenic | 40.0% | |
| AAGAAGCTCCTCAATGAATC+TGG | - | chr1.3:48321066-48321085 | MS.gene24041:CDS | 40.0% | |
| AATTCAGCCCAGATTCATTG+AGG | + | chr1.3:48321077-48321096 | None:intergenic | 40.0% | |
| ACACTAGGAAGATCCACAAA+AGG | + | chr1.3:48321369-48321388 | None:intergenic | 40.0% | |
| ACATGAGATCATTACCATCC+AGG | + | chr1.3:48321698-48321717 | None:intergenic | 40.0% | |
| AGAAGCTCCTCAATGAATCT+GGG | - | chr1.3:48321067-48321086 | MS.gene24041:CDS | 40.0% | |
| AGCTTCTTTGAGTGAGGAAT+TGG | + | chr1.3:48321054-48321073 | None:intergenic | 40.0% | |
| AGTCGAAGGCTAAAGTTACT+AGG | - | chr1.3:48320569-48320588 | MS.gene24041:CDS | 40.0% | |
| ATTTCGCGAACAAATTCTCC+AGG | + | chr1.3:48321525-48321544 | None:intergenic | 40.0% | |
| CTAGTGTCAAAGTTACTTGG+AGG | - | chr1.3:48321382-48321401 | MS.gene24041:CDS | 40.0% | |
| CTCCAAGTAACTTTGACACT+AGG | + | chr1.3:48321384-48321403 | None:intergenic | 40.0% | |
| CTGTTAATCCTCCATCTGAT+CGG | - | chr1.3:48321202-48321221 | MS.gene24041:CDS | 40.0% | |
| GCTTCAATATTGGCATCTTC+AGG | + | chr1.3:48321567-48321586 | None:intergenic | 40.0% | |
| GTCGAAGGCTAAAGTTACTA+GGG | - | chr1.3:48320570-48320589 | MS.gene24041:CDS | 40.0% | |
| TCACAAGGATCAGAATTCCA+CGG | + | chr1.3:48320394-48320413 | None:intergenic | 40.0% | |
| TTCGATCTCATAGGATGCAA+AGG | - | chr1.3:48320800-48320819 | MS.gene24041:CDS | 40.0% | |
| TTTGCTTAACCTTCCGAAAG+CGG | - | chr1.3:48320462-48320481 | MS.gene24041:CDS | 40.0% | |
| ! | CATGTACATGTGGGTTTTCA+AGG | - | chr1.3:48320672-48320691 | MS.gene24041:CDS | 40.0% |
| ! | CCCTTCAACACTTTTGTCAA+TGG | - | chr1.3:48320267-48320286 | MS.gene24041:CDS | 40.0% |
| ! | CCTTTTCTTGCTACTGATAG+GGG | + | chr1.3:48321139-48321158 | None:intergenic | 40.0% |
| ! | TCAACCAGTGTTGTTCACTA+GGG | + | chr1.3:48321248-48321267 | None:intergenic | 40.0% |
| ! | TTCAACCAGTGTTGTTCACT+AGG | + | chr1.3:48321249-48321268 | None:intergenic | 40.0% |
| !! | AGTGTTGCTTGAAAAGTCGA+AGG | - | chr1.3:48320555-48320574 | MS.gene24041:CDS | 40.0% |
| !! | CTGGTTGAATGATTTTAGCG+GGG | - | chr1.3:48321260-48321279 | MS.gene24041:CDS | 40.0% |
| !! | CTTTTGTCAATGGACTCAAG+TGG | - | chr1.3:48320277-48320296 | MS.gene24041:CDS | 40.0% |
| !! | GTTTCCTTTCAGTGTTGACA+AGG | - | chr1.3:48320771-48320790 | MS.gene24041:CDS | 40.0% |
| !! | TCTCACTTGTTGTCTCTCAA+TGG | - | chr1.3:48320231-48320250 | MS.gene24041:CDS | 40.0% |
| !! | TTCGACTTTTCAAGCAACAC+TGG | + | chr1.3:48320556-48320575 | None:intergenic | 40.0% |
| !! | TTGACAAAAGTGTTGAAGGG+TGG | + | chr1.3:48320267-48320286 | None:intergenic | 40.0% |
| !!! | AGGGTTTTGTTCGATCTCAT+AGG | - | chr1.3:48320791-48320810 | MS.gene24041:CDS | 40.0% |
| !!! | ATTGTTTTTGCAGCTGTAGC+CGG | + | chr1.3:48321306-48321325 | None:intergenic | 40.0% |
| AAATCCGGAATCCGATCAGA+TGG | + | chr1.3:48321216-48321235 | None:intergenic | 45.0% | |
| AAGAAGTGGATGGAACTCAC+TGG | - | chr1.3:48320916-48320935 | MS.gene24041:CDS | 45.0% | |
| ACTTCATGCTCTTCAGATCC+AGG | + | chr1.3:48321642-48321661 | None:intergenic | 45.0% | |
| AGGATCAGTGCTTGAGATCA+TGG | - | chr1.3:48321602-48321621 | MS.gene24041:CDS | 45.0% | |
| AGGGGTAAATTGATATCGGG+CGG | + | chr1.3:48320358-48320377 | None:intergenic | 45.0% | |
| ATCTGATCGGATTCCGGATT+TGG | - | chr1.3:48321215-48321234 | MS.gene24041:CDS | 45.0% | |
| ATGACAGCAATGGTGTTTCG+GGG | - | chr1.3:48320593-48320612 | MS.gene24041:CDS | 45.0% | |
| ATGCAAAGGAAGCAGTACAG+GGG | - | chr1.3:48320814-48320833 | MS.gene24041:CDS | 45.0% | |
| ATTTCTTCACCGCTTTCGGA+AGG | + | chr1.3:48320474-48320493 | None:intergenic | 45.0% | |
| CAGCTGAGGAGTTACATGAA+CGG | - | chr1.3:48320724-48320743 | MS.gene24041:CDS | 45.0% | |
| CCCCTATCAGTAGCAAGAAA+AGG | - | chr1.3:48321136-48321155 | MS.gene24041:CDS | 45.0% | |
| CTAGGGTGCATTTCCAAATC+CGG | + | chr1.3:48321231-48321250 | None:intergenic | 45.0% | |
| GAGCATTTCTTCACCGCTTT+CGG | + | chr1.3:48320478-48320497 | None:intergenic | 45.0% | |
| GATGAAGAATGTCTGTGGAC+CGG | - | chr1.3:48321284-48321303 | MS.gene24041:CDS | 45.0% | |
| GATGACAGCAATGGTGTTTC+GGG | - | chr1.3:48320592-48320611 | MS.gene24041:CDS | 45.0% | |
| GATGCAAAGGAAGCAGTACA+GGG | - | chr1.3:48320813-48320832 | MS.gene24041:CDS | 45.0% | |
| GGATGACAGCAATGGTGTTT+CGG | - | chr1.3:48320591-48320610 | MS.gene24041:CDS | 45.0% | |
| GTTACTAGGGATGACAGCAA+TGG | - | chr1.3:48320583-48320602 | MS.gene24041:CDS | 45.0% | |
| TCAAATCCTCAGTGTCTGCA+TGG | - | chr1.3:48320841-48320860 | MS.gene24041:CDS | 45.0% | |
| TCAATACCATGCAGACACTG+AGG | + | chr1.3:48320850-48320869 | None:intergenic | 45.0% | |
| TCAGATCCAGGACGAAGTTT+AGG | + | chr1.3:48321630-48321649 | None:intergenic | 45.0% | |
| TCATATGCCTAACGGTGATG+CGG | - | chr1.3:48321104-48321123 | MS.gene24041:CDS | 45.0% | |
| TGGAGGAATACTCTCACTCA+TGG | - | chr1.3:48321399-48321418 | MS.gene24041:CDS | 45.0% | |
| TTGAGGAGCTTCTTTGAGTG+AGG | + | chr1.3:48321060-48321079 | None:intergenic | 45.0% | |
| ! | ATCTTCCCCAAAGCATTCTC+CGG | + | chr1.3:48320703-48320722 | None:intergenic | 45.0% |
| ! | ATTGGAGCACTCTTGATTGG+AGG | + | chr1.3:48321036-48321055 | None:intergenic | 45.0% |
| ! | GGAATTGGAGCACTCTTGAT+TGG | + | chr1.3:48321039-48321058 | None:intergenic | 45.0% |
| ! | TTGATAGCATTTGGGGTGCT+TGG | - | chr1.3:48320506-48320525 | MS.gene24041:CDS | 45.0% |
| !! | ACATGTGGGTTTTCAAGGAG+AGG | - | chr1.3:48320677-48320696 | MS.gene24041:CDS | 45.0% |
| !! | AGGCGTGTTGATAGCATTTG+GGG | - | chr1.3:48320499-48320518 | MS.gene24041:CDS | 45.0% |
| !! | ATGATCTCAAGCACTGATCC+TGG | + | chr1.3:48321603-48321622 | None:intergenic | 45.0% |
| !! | GAAGCTTACTATGATGGACC+AGG | - | chr1.3:48321582-48321601 | MS.gene24041:CDS | 45.0% |
| !! | GAGGCGTGTTGATAGCATTT+GGG | - | chr1.3:48320498-48320517 | MS.gene24041:CDS | 45.0% |
| !! | GATGTTGGTCTTGGTACTCA+AGG | - | chr1.3:48320421-48320440 | MS.gene24041:CDS | 45.0% |
| !! | GGGGTGCTTGGTTTTTCTTT+AGG | - | chr1.3:48320518-48320537 | MS.gene24041:CDS | 45.0% |
| AAGCGGTGAAGAAATGCTCG+AGG | - | chr1.3:48320479-48320498 | MS.gene24041:CDS | 50.0% | |
| ACAGGGATGAGCAGAAGAAG+TGG | - | chr1.3:48320902-48320921 | MS.gene24041:CDS | 50.0% | |
| ATGAACGGACATTCTCGCCA+AGG | - | chr1.3:48320739-48320758 | MS.gene24041:CDS | 50.0% | |
| ATGGTGCCTAAACTTCGTCC+TGG | - | chr1.3:48321621-48321640 | MS.gene24041:CDS | 50.0% | |
| CGCGAACAAATTCTCCAGGA+GGG | + | chr1.3:48321521-48321540 | None:intergenic | 50.0% | |
| GATTAGGACGAAGGCAGACA+CGG | + | chr1.3:48321665-48321684 | None:intergenic | 50.0% | |
| GGATGAGCAGAAGAAGTGGA+TGG | - | chr1.3:48320906-48320925 | MS.gene24041:CDS | 50.0% | |
| GGATGCAAAGGAAGCAGTAC+AGG | - | chr1.3:48320812-48320831 | MS.gene24041:CDS | 50.0% | |
| GGGGTGATGAAGAATGTCTG+TGG | - | chr1.3:48321279-48321298 | MS.gene24041:CDS | 50.0% | |
| GTCTGCCTTCGTCCTAATCT+TGG | - | chr1.3:48321666-48321685 | MS.gene24041:CDS | 50.0% | |
| TCCAGGTTGCCACCAAGATT+AGG | + | chr1.3:48321681-48321700 | None:intergenic | 50.0% | |
| TCCTCCATCTGATCGGATTC+CGG | - | chr1.3:48321209-48321228 | MS.gene24041:CDS | 50.0% | |
| TCGCGAACAAATTCTCCAGG+AGG | + | chr1.3:48321522-48321541 | None:intergenic | 50.0% | |
| TGAACGGACATTCTCGCCAA+GGG | - | chr1.3:48320740-48320759 | MS.gene24041:CDS | 50.0% | |
| TGCACCCTAGTGAACAACAC+TGG | - | chr1.3:48321241-48321260 | MS.gene24041:CDS | 50.0% | |
| TGCCACCAAGATTAGGACGA+AGG | + | chr1.3:48321674-48321693 | None:intergenic | 50.0% | |
| TGCCTTCGTCCTAATCTTGG+TGG | - | chr1.3:48321669-48321688 | MS.gene24041:CDS | 50.0% | |
| ! | AATCTTGGTGGCAACCTGGA+TGG | - | chr1.3:48321681-48321700 | MS.gene24041:CDS | 50.0% |
| ! | TCCTAATCTTGGTGGCAACC+TGG | - | chr1.3:48321677-48321696 | MS.gene24041:CDS | 50.0% |
| !! | CGAGGCGTGTTGATAGCATT+TGG | - | chr1.3:48320497-48320516 | MS.gene24041:CDS | 50.0% |
| !! | GTTGGTCTTGGTACTCAAGG+TGG | - | chr1.3:48320424-48320443 | MS.gene24041:CDS | 50.0% |
| AAGCAAGCGACTTCGGCTCA+TGG | - | chr1.3:48320968-48320987 | MS.gene24041:CDS | 55.0% | |
| AAGGAAACGGACGTTCCCCT+TGG | + | chr1.3:48320759-48320778 | None:intergenic | 55.0% | |
| AAGTCAGCCGCATCACCGTT+AGG | + | chr1.3:48321114-48321133 | None:intergenic | 55.0% | |
| AGAGGCCGGAGAATGCTTTG+GGG | - | chr1.3:48320695-48320714 | MS.gene24041:CDS | 55.0% | |
| GAACGGACATTCTCGCCAAG+GGG | - | chr1.3:48320741-48320760 | MS.gene24041:CDS | 55.0% | |
| GAGAGGCCGGAGAATGCTTT+GGG | - | chr1.3:48320694-48320713 | MS.gene24041:CDS | 55.0% | |
| GCACTCTTGATTGGAGGAGG+TGG | + | chr1.3:48321030-48321049 | None:intergenic | 55.0% | |
| GGATCAGAATTCCACGGCTG+CGG | + | chr1.3:48320388-48320407 | None:intergenic | 55.0% | |
| TCCGGAATCCGATCAGATGG+AGG | + | chr1.3:48321213-48321232 | None:intergenic | 55.0% | |
| TGAGCCGAAGTCGCTTGCTT+CGG | + | chr1.3:48320968-48320987 | None:intergenic | 55.0% | |
| ! | CTTTGGGGAAGATGCAGCTG+AGG | - | chr1.3:48320710-48320729 | MS.gene24041:CDS | 55.0% |
| ! | GGAGCACTCTTGATTGGAGG+AGG | + | chr1.3:48321033-48321052 | None:intergenic | 55.0% |
| !! | GTGGGTTTTCAAGGAGAGGC+CGG | - | chr1.3:48320681-48320700 | MS.gene24041:CDS | 55.0% |
| CAAGCGACTTCGGCTCATGG+AGG | - | chr1.3:48320971-48320990 | MS.gene24041:CDS | 60.0% | |
| GGAGAGGCCGGAGAATGCTT+TGG | - | chr1.3:48320693-48320712 | MS.gene24041:CDS | 60.0% | |
| CCGAAGTCGCTTGCTTCGGC+CGG | + | chr1.3:48320964-48320983 | None:intergenic | 65.0% | |
| CCGGCCGAAGCAAGCGACTT+CGG | - | chr1.3:48320961-48320980 | MS.gene24041:CDS | 65.0% | |
| CGAAGTCGCTTGCTTCGGCC+GGG | + | chr1.3:48320963-48320982 | None:intergenic | 65.0% | |
| TCCAGGAGGGCAGTGCTCTG+AGG | + | chr1.3:48321508-48321527 | None:intergenic | 65.0% | |
| !! | GGAGGGCAGTGCTCTGAGGA+TGG | + | chr1.3:48321504-48321523 | None:intergenic | 65.0% |
| !! | TCCTCAGAGCACTGCCCTCC+TGG | - | chr1.3:48321504-48321523 | MS.gene24041:CDS | 65.0% |
| ! | CACGGCTGCGGCACCGAAAG+GGG | + | chr1.3:48320376-48320395 | None:intergenic | 70.0% |
| ! | CCACGGCTGCGGCACCGAAA+GGG | + | chr1.3:48320377-48320396 | None:intergenic | 70.0% |
| ! | TCCACGGCTGCGGCACCGAA+AGG | + | chr1.3:48320378-48320397 | None:intergenic | 70.0% |
| !! | CCCTTTCGGTGCCGCAGCCG+TGG | - | chr1.3:48320374-48320393 | MS.gene24041:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 48320217 | 48321725 | 48320217 | ID=MS.gene24041 |
| chr1.3 | mRNA | 48320217 | 48321725 | 48320217 | ID=MS.gene24041.t1;Parent=MS.gene24041 |
| chr1.3 | exon | 48320217 | 48321725 | 48320217 | ID=MS.gene24041.t1.exon1;Parent=MS.gene24041.t1 |
| chr1.3 | CDS | 48320217 | 48321725 | 48320217 | ID=cds.MS.gene24041.t1;Parent=MS.gene24041.t1 |
| Gene Sequence |
| Protein sequence |
