Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24048.t1 | XP_013468353.1 | 90.9 | 473 | 41 | 1 | 1 | 471 | 1 | 473 | 8.10E-238 | 832.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24048.t1 | F4KCE9 | 24.9 | 562 | 304 | 16 | 21 | 471 | 14 | 568 | 3.9e-23 | 110.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24048.t1 | A0A072VWG5 | 90.9 | 473 | 41 | 1 | 1 | 471 | 1 | 473 | 5.8e-238 | 832.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene24048.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049190 | MS.gene24048 | 0.825327 | 4.98E-54 | -1.69E-46 |
| MS.gene051719 | MS.gene24048 | 0.800671 | 1.29E-48 | -1.69E-46 |
| MS.gene051720 | MS.gene24048 | 0.813053 | 3.11E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene24048 | 0.80697 | 6.35E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene24048 | 0.822924 | 1.83E-53 | -1.69E-46 |
| MS.gene058998 | MS.gene24048 | 0.896759 | 2.71E-76 | -1.69E-46 |
| MS.gene059625 | MS.gene24048 | 0.803409 | 3.54E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24048.t1 | MTR_1g069015 | 90.909 | 473 | 41 | 1 | 1 | 471 | 1 | 473 | 0.0 | 872 |
| MS.gene24048.t1 | MTR_1g069020 | 67.347 | 343 | 100 | 3 | 129 | 471 | 246 | 576 | 2.31e-143 | 424 |
| MS.gene24048.t1 | MTR_1g069020 | 59.146 | 328 | 118 | 4 | 22 | 344 | 26 | 342 | 1.36e-121 | 368 |
| MS.gene24048.t1 | MTR_7g039520 | 35.714 | 140 | 80 | 5 | 1 | 137 | 1 | 133 | 5.36e-18 | 85.5 |
| MS.gene24048.t1 | MTR_5g040080 | 35.714 | 140 | 80 | 5 | 1 | 137 | 1 | 133 | 5.78e-18 | 85.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24048.t1 | AT5G02520 | 42.308 | 130 | 69 | 4 | 21 | 146 | 14 | 141 | 5.79e-28 | 117 |
| MS.gene24048.t1 | AT5G02520 | 42.308 | 130 | 69 | 4 | 21 | 146 | 14 | 141 | 7.42e-28 | 117 |
| MS.gene24048.t1 | AT5G02520 | 42.748 | 131 | 68 | 5 | 21 | 146 | 14 | 142 | 4.15e-27 | 115 |
| MS.gene24048.t1 | AT1G58210 | 42.391 | 92 | 51 | 1 | 24 | 115 | 64 | 153 | 8.41e-17 | 80.9 |
Find 113 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACCATCAGATGATATTTC+TGG | 0.152483 | 1.3:+48249396 | None:intergenic |
| TTCTACCTCGCTTAGAGTTT+TGG | 0.216024 | 1.3:-48248481 | MS.gene24048:CDS |
| CTCTGTTTCTCCAGAGTCAT+TGG | 0.218790 | 1.3:-48248737 | MS.gene24048:CDS |
| CGGTAACAGGCTGTTTCTTC+TGG | 0.249872 | 1.3:+48249091 | None:intergenic |
| GATTAACAGGGCAGAGATTT+AGG | 0.252160 | 1.3:-48247900 | MS.gene24048:intron |
| TCAAACACCTATTTATAATA+TGG | 0.307116 | 1.3:-48248453 | MS.gene24048:intron |
| GAGGTTGTTATAAGAGAAAA+AGG | 0.309998 | 1.3:-48248882 | MS.gene24048:CDS |
| TGTCAAGAAATCTTGTTTGA+TGG | 0.311615 | 1.3:-48249835 | MS.gene24048:intron |
| CGGAAGCAGCAGCCTGCATC+TGG | 0.314800 | 1.3:-48249522 | MS.gene24048:CDS |
| TCACATACCATATTATAAAT+AGG | 0.323614 | 1.3:+48248446 | None:intergenic |
| TCTTTATCTGGATGTGTTGC+CGG | 0.325220 | 1.3:+48249063 | None:intergenic |
| TGATTCGGCCAATGCTATTC+CGG | 0.331513 | 1.3:-48249875 | MS.gene24048:CDS |
| GAGCAGCGCACGCTGGAAAA+TGG | 0.336004 | 1.3:-48250140 | MS.gene24048:CDS |
| AGAGCATAGCTTTCCCAGTT+TGG | 0.337878 | 1.3:+48249931 | None:intergenic |
| GGAATAGTAAACACATTGTC+TGG | 0.341105 | 1.3:-48248961 | MS.gene24048:CDS |
| GTGGAGATCTGGTCTTTATC+TGG | 0.363337 | 1.3:+48249051 | None:intergenic |
| AGTGGGGTTGATGTTACTTA+TGG | 0.365193 | 1.3:-48249597 | MS.gene24048:CDS |
| AAAGTTTAACATTATGCAAC+CGG | 0.379110 | 1.3:+48249115 | None:intergenic |
| CAGAAGAAACAGCCTGTTAC+CGG | 0.399407 | 1.3:-48249090 | MS.gene24048:CDS |
| AACCCCACTCATCTCCTTTG+AGG | 0.416310 | 1.3:+48249611 | None:intergenic |
| GGTGTTGCCTGACGAGGCCC+TGG | 0.428575 | 1.3:-48249673 | MS.gene24048:CDS |
| GGGCAGAGATTTAGGCATAA+TGG | 0.434677 | 1.3:-48247892 | MS.gene24048:CDS |
| TCTGTTTCTCCAGAGTCATT+GGG | 0.438436 | 1.3:-48248736 | MS.gene24048:CDS |
| CAATCTCCCGTGGTCTTATC+CGG | 0.440181 | 1.3:+48249231 | None:intergenic |
| TCCTACTTCTTTGGTATCAC+CGG | 0.443039 | 1.3:-48249250 | MS.gene24048:CDS |
| GGCATTCCTCGAAGATGAAC+GGG | 0.446700 | 1.3:-48249202 | MS.gene24048:CDS |
| GGTGAGGTCAATGTTGTTCA+TGG | 0.450542 | 1.3:-48249162 | MS.gene24048:CDS |
| TCTAGGTTACTTTATACGAT+TGG | 0.451256 | 1.3:-48251352 | MS.gene24048:intron |
| TTCTTGTAGTTTCCGACGAA+CGG | 0.452239 | 1.3:-48251457 | MS.gene24048:intron |
| GACACCCATTCAGTCACAAA+AGG | 0.454994 | 1.3:-48248983 | MS.gene24048:CDS |
| GTTGCCGGATCTCCGGTAAC+AGG | 0.455494 | 1.3:+48249078 | None:intergenic |
| ACATGTCCCGTTCATCTTCG+AGG | 0.466823 | 1.3:+48249196 | None:intergenic |
| AGGCTGGTAAGGTGGAGATC+TGG | 0.472582 | 1.3:+48249040 | None:intergenic |
| GATCTCCACCTTACCAGCCT+TGG | 0.478185 | 1.3:-48249037 | MS.gene24048:CDS |
| ACAGCCTGTTACCGGAGATC+CGG | 0.478659 | 1.3:-48249082 | MS.gene24048:CDS |
| GACCACGGGAGATTGCAATA+AGG | 0.479142 | 1.3:-48249223 | MS.gene24048:CDS |
| TGGATGTGTTGCCGGATCTC+CGG | 0.481700 | 1.3:+48249071 | None:intergenic |
| AGGTTACTTTATACGATTGG+TGG | 0.484584 | 1.3:-48251349 | MS.gene24048:CDS |
| ATCTGAAGCTGATATTGATT+CGG | 0.486466 | 1.3:-48249890 | MS.gene24048:CDS |
| GCTCTAGAATGCACCGGAGA+AGG | 0.500619 | 1.3:-48249913 | MS.gene24048:CDS |
| AAATTTCATTCCTACTTCGT+TGG | 0.500725 | 1.3:-48249694 | MS.gene24048:CDS |
| GAAGAAATGGTTGCAGTTGG+AGG | 0.503417 | 1.3:+48251495 | None:intergenic |
| GGAAACCGTTTAGCCATCTC+TGG | 0.503556 | 1.3:-48251308 | MS.gene24048:CDS |
| GTCAATGTTGTTCATGGTAG+TGG | 0.510692 | 1.3:-48249156 | MS.gene24048:CDS |
| AGAAGTGGAAACTCGTGATT+CGG | 0.511753 | 1.3:-48249454 | MS.gene24048:CDS |
| CTGTAAAATCTCCACAAGGA+AGG | 0.520970 | 1.3:-48248801 | MS.gene24048:CDS |
| TTGGAAGAAATGGTTGCAGT+TGG | 0.521784 | 1.3:+48251492 | None:intergenic |
| TGGTATATATGTTATCACTA+GGG | 0.526872 | 1.3:-48250174 | MS.gene24048:CDS |
| CTACGATGACCTCCAGATGC+AGG | 0.528905 | 1.3:+48249510 | None:intergenic |
| ACACCCATTCAGTCACAAAA+GGG | 0.532185 | 1.3:-48248982 | MS.gene24048:CDS |
| GTTGATGTTACTTATGGTAG+TGG | 0.532246 | 1.3:-48249591 | MS.gene24048:CDS |
| AATGGTTGCAGTTGGAGGAG+TGG | 0.532867 | 1.3:+48251500 | None:intergenic |
| GGAAAATGCAAGAAACCATT+CGG | 0.536222 | 1.3:-48249651 | MS.gene24048:CDS |
| AGATGCCAGAGATGGCTAAA+CGG | 0.536792 | 1.3:+48251303 | None:intergenic |
| AAAAGAATGCAAAGCCTCAA+AGG | 0.537351 | 1.3:-48249625 | MS.gene24048:CDS |
| TGTAAAATCTCCACAAGGAA+GGG | 0.537405 | 1.3:-48248800 | MS.gene24048:CDS |
| CAAATTGCAGATACACTATC+CGG | 0.539970 | 1.3:+48249856 | None:intergenic |
| TACACTATCCGGAATAGCAT+TGG | 0.541623 | 1.3:+48249867 | None:intergenic |
| AACATTAATAGCACGTAACC+TGG | 0.544388 | 1.3:+48249551 | None:intergenic |
| ATATACCATCGGCAGTCTCA+AGG | 0.545294 | 1.3:+48250189 | None:intergenic |
| GAGCTCTACCTCAACAGAAG+TGG | 0.545818 | 1.3:-48249469 | MS.gene24048:CDS |
| AGTAAACACATTGTCTGGGC+AGG | 0.549663 | 1.3:-48248956 | MS.gene24048:CDS |
| TTCGTTGGTGTTGCCTGACG+AGG | 0.551013 | 1.3:-48249679 | MS.gene24048:CDS |
| ATGTTGTTCATGGTAGTGGC+AGG | 0.553357 | 1.3:-48249152 | MS.gene24048:CDS |
| ATCAGCTTCAGATCCTTCTC+CGG | 0.554639 | 1.3:+48249900 | None:intergenic |
| ATGGTATATATGTTATCACT+AGG | 0.556691 | 1.3:-48250175 | MS.gene24048:CDS |
| ACTGCAACCATTTCTTCCAA+TGG | 0.556744 | 1.3:-48251489 | MS.gene24048:CDS |
| TCGTCGGAAACTACAAGAAG+TGG | 0.558977 | 1.3:+48251461 | None:intergenic |
| GCGAAAATAGACATGGTACC+AGG | 0.560344 | 1.3:-48249569 | MS.gene24048:CDS |
| AAGCCTCAAAGGAGATGAGT+GGG | 0.564158 | 1.3:-48249614 | MS.gene24048:CDS |
| GCATAGCTTTCCCAGTTTGG+AGG | 0.565501 | 1.3:+48249934 | None:intergenic |
| AAGCAGCAGCCTGCATCTGG+AGG | 0.566088 | 1.3:-48249519 | MS.gene24048:CDS |
| GCAGGAATAGACGTAGTGCC+CGG | 0.566956 | 1.3:-48249134 | MS.gene24048:CDS |
| TCAGGCAACACCAACGAAGT+AGG | 0.568738 | 1.3:+48249684 | None:intergenic |
| GGAAAAGAGTGATGGAGGAC+TGG | 0.572017 | 1.3:-48249016 | MS.gene24048:CDS |
| AGGCATTCCTCGAAGATGAA+CGG | 0.572872 | 1.3:-48249203 | MS.gene24048:CDS |
| TCCGGTGATACCAAAGAAGT+AGG | 0.573504 | 1.3:+48249249 | None:intergenic |
| GGATACAAGTCACTCGAACA+AGG | 0.576987 | 1.3:-48248779 | MS.gene24048:CDS |
| ACGAGTTTCCACTTCTGTTG+AGG | 0.577453 | 1.3:+48249461 | None:intergenic |
| CATGAACGAGCAGCGCACGC+TGG | 0.579334 | 1.3:-48250147 | MS.gene24048:CDS |
| GGTATATATGTTATCACTAG+GGG | 0.588021 | 1.3:-48250173 | MS.gene24048:CDS |
| CATCCAGAAATATCATCTGA+TGG | 0.590199 | 1.3:-48249399 | MS.gene24048:intron |
| AGCTATGCTCTAGAATGCAC+CGG | 0.591217 | 1.3:-48249919 | MS.gene24048:CDS |
| ACGGGACATGTCAATTAAGA+CGG | 0.591957 | 1.3:-48249184 | MS.gene24048:CDS |
| CGGGACATGTCAATTAAGAC+GGG | 0.595490 | 1.3:-48249183 | MS.gene24048:CDS |
| CGTCGGAAACTACAAGAAGT+GGG | 0.597461 | 1.3:+48251462 | None:intergenic |
| TGACTTGTATCCCTTCCTTG+TGG | 0.599408 | 1.3:+48248790 | None:intergenic |
| TCTGGAAGAGATGCCAGAGA+TGG | 0.599841 | 1.3:+48251295 | None:intergenic |
| TGCCTTATTGCAATCTCCCG+TGG | 0.601695 | 1.3:+48249221 | None:intergenic |
| GTGAGTAAACAACCGTTCGT+CGG | 0.603870 | 1.3:+48251445 | None:intergenic |
| TATACCATCGGCAGTCTCAA+GGG | 0.605137 | 1.3:+48250190 | None:intergenic |
| GAATAGTAAACACATTGTCT+GGG | 0.607705 | 1.3:-48248960 | MS.gene24048:CDS |
| CCAGCCTTGGAAAAGAGTGA+TGG | 0.608271 | 1.3:-48249024 | MS.gene24048:CDS |
| GATACAAGTCACTCGAACAA+GGG | 0.609110 | 1.3:-48248778 | MS.gene24048:CDS |
| ACAGTTGAAACAGAAGCAGT+TGG | 0.619629 | 1.3:-48248856 | MS.gene24048:CDS |
| CTGCATCTGGAGGTCATCGT+AGG | 0.620919 | 1.3:-48249509 | MS.gene24048:CDS |
| GCCTTGGAAAAGAGTGATGG+AGG | 0.621071 | 1.3:-48249021 | MS.gene24048:CDS |
| AGTGATAACATATATACCAT+CGG | 0.622033 | 1.3:+48250178 | None:intergenic |
| GTATCACCGGATAAGACCAC+GGG | 0.626364 | 1.3:-48249237 | MS.gene24048:CDS |
| GTGTTGCCTGACGAGGCCCT+GGG | 0.635492 | 1.3:-48249672 | MS.gene24048:CDS |
| TGGCTCGTTAAATCATCTCA+AGG | 0.637214 | 1.3:-48251329 | MS.gene24048:CDS |
| CATGTCAATTAAGACGGGTG+AGG | 0.637260 | 1.3:-48249178 | MS.gene24048:CDS |
| GTCGGAAACTACAAGAAGTG+GGG | 0.648342 | 1.3:+48251463 | None:intergenic |
| AAAGCCTCAAAGGAGATGAG+TGG | 0.652543 | 1.3:-48249615 | MS.gene24048:CDS |
| AAGTTTAACATTATGCAACC+GGG | 0.654972 | 1.3:+48249116 | None:intergenic |
| CAATGACTCTGGAGAAACAG+AGG | 0.661940 | 1.3:+48248738 | None:intergenic |
| GTGCTATTAATGTTTGTCAG+CGG | 0.670687 | 1.3:-48249542 | MS.gene24048:CDS |
| GGTATCACCGGATAAGACCA+CGG | 0.680385 | 1.3:-48249238 | MS.gene24048:CDS |
| TCGGAAACTACAAGAAGTGG+GGG | 0.686416 | 1.3:+48251464 | None:intergenic |
| TCTTCTGTAAAATCTCCACA+AGG | 0.702540 | 1.3:-48248805 | MS.gene24048:CDS |
| GGTAGTGGCGAAAATAGACA+TGG | 0.702887 | 1.3:-48249576 | MS.gene24048:CDS |
| TTGCGCCAAAACTCTAAGCG+AGG | 0.703796 | 1.3:+48248476 | None:intergenic |
| AGCCTCAAAGGAGATGAGTG+GGG | 0.721063 | 1.3:-48249613 | MS.gene24048:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAATTTGCA+AGG | + | chr1.3:48248602-48248621 | None:intergenic | 10.0% |
| !! | ATAAAAAAAATATTTGTAGA+AGG | + | chr1.3:48248573-48248592 | None:intergenic | 10.0% |
| !! | ATTATTAAAACAAAACAATA+AGG | + | chr1.3:48248634-48248653 | None:intergenic | 10.0% |
| !!! | ATTTCAAAGAATTTTTTATA+TGG | - | chr1.3:48249433-48249452 | MS.gene24048:CDS | 10.0% |
| !! | AATAAATCCTAGATATAAAA+TGG | + | chr1.3:48251033-48251052 | None:intergenic | 15.0% |
| !!! | TAAAATTATCATTTTTGAGT+CGG | - | chr1.3:48248353-48248372 | MS.gene24048:intron | 15.0% |
| !! | AAAAAGAAAAATTGTTAAGC+AGG | + | chr1.3:48248469-48248488 | None:intergenic | 20.0% |
| !! | ATACTTTATGTTGTAAATCA+GGG | - | chr1.3:48249124-48249143 | MS.gene24048:CDS | 20.0% |
| !! | ATATACAAAAATGCTAACAA+TGG | + | chr1.3:48250827-48250846 | None:intergenic | 20.0% |
| !! | ATGCATATGATATCTAATAA+TGG | + | chr1.3:48251009-48251028 | None:intergenic | 20.0% |
| !! | TCAAACACCTATTTATAATA+TGG | - | chr1.3:48250941-48250960 | MS.gene24048:intron | 20.0% |
| !! | TCACATACCATATTATAAAT+AGG | + | chr1.3:48250951-48250970 | None:intergenic | 20.0% |
| !!! | ACAATCTATAATCTTTTAAC+TGG | - | chr1.3:48251094-48251113 | MS.gene24048:intron | 20.0% |
| !!! | ACATCATATCTTTTGATAAT+AGG | + | chr1.3:48249179-48249198 | None:intergenic | 20.0% |
| !!! | ATTGTTAGCATTTTTGTATA+TGG | - | chr1.3:48250826-48250845 | MS.gene24048:intron | 20.0% |
| !!! | ATTTATTTTCTCTTTAAGGT+GGG | - | chr1.3:48251046-48251065 | MS.gene24048:intron | 20.0% |
| !!! | GGTTTAATATTTTTTCTCTT+AGG | + | chr1.3:48250565-48250584 | None:intergenic | 20.0% |
| !!! | TAGGATTTATTTTCTCTTTA+AGG | - | chr1.3:48251042-48251061 | MS.gene24048:intron | 20.0% |
| !!! | TTTTAAGTTAGATGAAAACT+TGG | - | chr1.3:48248272-48248291 | MS.gene24048:intron | 20.0% |
| ! | AAACTCAACGTCATAAAATA+AGG | + | chr1.3:48249363-48249382 | None:intergenic | 25.0% |
| ! | AAAGAATAGAGTGAAGTAAA+TGG | + | chr1.3:48250864-48250883 | None:intergenic | 25.0% |
| ! | AAAGTTTAACATTATGCAAC+CGG | + | chr1.3:48250282-48250301 | None:intergenic | 25.0% |
| ! | AAATCTGTTCATATTGAAGT+TGG | + | chr1.3:48248733-48248752 | None:intergenic | 25.0% |
| ! | ACAAATGGTTTATGATTAAC+AGG | - | chr1.3:48251481-48251500 | MS.gene24048:CDS | 25.0% |
| ! | ACTAGCATTTATACATGAAA+AGG | + | chr1.3:48249013-48249032 | None:intergenic | 25.0% |
| ! | AGGACTAAAATGAATATTAG+AGG | - | chr1.3:48248705-48248724 | MS.gene24048:intron | 25.0% |
| ! | AGGTTGTTATAAGAGAAAAA+GGG | - | chr1.3:48250513-48250532 | MS.gene24048:intron | 25.0% |
| ! | AGTGATAACATATATACCAT+CGG | + | chr1.3:48249219-48249238 | None:intergenic | 25.0% |
| ! | ATAAAGCTTCAATATGCAAA+CGG | - | chr1.3:48248513-48248532 | MS.gene24048:intron | 25.0% |
| ! | ATGGTATATATGTTATCACT+AGG | - | chr1.3:48249219-48249238 | MS.gene24048:CDS | 25.0% |
| ! | CAAATGGTTTATGATTAACA+GGG | - | chr1.3:48251482-48251501 | MS.gene24048:CDS | 25.0% |
| ! | CATACTTTATGTTGTAAATC+AGG | - | chr1.3:48249123-48249142 | MS.gene24048:CDS | 25.0% |
| ! | GCAAGAGAGATAATTAATTA+GGG | - | chr1.3:48251440-48251459 | MS.gene24048:intron | 25.0% |
| ! | GGACTAAAATGAATATTAGA+GGG | - | chr1.3:48248706-48248725 | MS.gene24048:intron | 25.0% |
| ! | TCACTCTATTCTTTATGTTT+GGG | - | chr1.3:48250870-48250889 | MS.gene24048:intron | 25.0% |
| ! | TCATAAACCATTTGTATGTT+CGG | + | chr1.3:48251476-48251495 | None:intergenic | 25.0% |
| ! | TGATAGAGATAAGAATAAGA+AGG | + | chr1.3:48247993-48248012 | None:intergenic | 25.0% |
| ! | TGCAAGAGAGATAATTAATT+AGG | - | chr1.3:48251439-48251458 | MS.gene24048:intron | 25.0% |
| ! | TGGTATATATGTTATCACTA+GGG | - | chr1.3:48249220-48249239 | MS.gene24048:CDS | 25.0% |
| ! | TTCACTCTATTCTTTATGTT+TGG | - | chr1.3:48250869-48250888 | MS.gene24048:intron | 25.0% |
| ! | TTGAAATCTAACCATAAAGT+AGG | + | chr1.3:48249420-48249439 | None:intergenic | 25.0% |
| !! | ATGCATACCATTTTATATCT+AGG | - | chr1.3:48251023-48251042 | MS.gene24048:intron | 25.0% |
| !! | TATTTTACCATTGTCAAACA+TGG | + | chr1.3:48248496-48248515 | None:intergenic | 25.0% |
| !! | TCTTTTATATCACCTTTTAG+AGG | - | chr1.3:48251174-48251193 | MS.gene24048:intron | 25.0% |
| !! | TTTTTATCAGAACTATCATG+TGG | - | chr1.3:48251258-48251277 | MS.gene24048:intron | 25.0% |
| !!! | ATATCTTTTGATAATAGGAG+TGG | + | chr1.3:48249174-48249193 | None:intergenic | 25.0% |
| !!! | GATTTATTTTCTCTTTAAGG+TGG | - | chr1.3:48251045-48251064 | MS.gene24048:intron | 25.0% |
| !!! | TGTTTTTTTTGCCTACTTTA+TGG | - | chr1.3:48249406-48249425 | MS.gene24048:CDS | 25.0% |
| !!! | TTATGTTTGGGTTATTTTGT+AGG | - | chr1.3:48250882-48250901 | MS.gene24048:intron | 25.0% |
| !!! | TTGTTTGATGGTAAGTATTT+TGG | - | chr1.3:48249571-48249590 | MS.gene24048:CDS | 25.0% |
| !!! | TTTTTTACAGACATGTAACA+AGG | + | chr1.3:48251346-48251365 | None:intergenic | 25.0% |
| !!! | TTTTTTACCATGTTTGACAA+TGG | - | chr1.3:48248486-48248505 | MS.gene24048:CDS | 25.0% |
| !!! | TTTTTTTCCTTTTCCTTTCT+AGG | - | chr1.3:48248025-48248044 | MS.gene24048:intron | 25.0% |
| AAAAATGCTAACAATGGCAT+TGG | + | chr1.3:48250821-48250840 | None:intergenic | 30.0% | |
| AAAATGCTAACAATGGCATT+GGG | + | chr1.3:48250820-48250839 | None:intergenic | 30.0% | |
| AAAGTAACCTAGAAAGGAAA+AGG | + | chr1.3:48248035-48248054 | None:intergenic | 30.0% | |
| AAATTTCATTCCTACTTCGT+TGG | - | chr1.3:48249700-48249719 | MS.gene24048:CDS | 30.0% | |
| AAGGTTAGAGAGAATTAGTT+AGG | + | chr1.3:48251327-48251346 | None:intergenic | 30.0% | |
| AAGTTTAACATTATGCAACC+GGG | + | chr1.3:48250281-48250300 | None:intergenic | 30.0% | |
| ACATGTCTGTAAAAAATGAG+CGG | - | chr1.3:48251350-48251369 | MS.gene24048:CDS | 30.0% | |
| AGGCAATTAAAGTGAATAAG+TGG | + | chr1.3:48248449-48248468 | None:intergenic | 30.0% | |
| ATTACAACCGAACATACAAA+TGG | - | chr1.3:48251466-48251485 | MS.gene24048:CDS | 30.0% | |
| CAATCATTGTCAATTCATGA+AGG | - | chr1.3:48250711-48250730 | MS.gene24048:intron | 30.0% | |
| CTCTCAATTACTATCATAAG+AGG | - | chr1.3:48249078-48249097 | MS.gene24048:CDS | 30.0% | |
| CTTCATGAATTGACAATGAT+TGG | + | chr1.3:48250713-48250732 | None:intergenic | 30.0% | |
| GAATAGTAAACACATTGTCT+GGG | - | chr1.3:48250434-48250453 | MS.gene24048:intron | 30.0% | |
| GAGATTATAGAAATTCAGGA+AGG | - | chr1.3:48251147-48251166 | MS.gene24048:intron | 30.0% | |
| GAGGTTGTTATAAGAGAAAA+AGG | - | chr1.3:48250512-48250531 | MS.gene24048:intron | 30.0% | |
| GGTATATATGTTATCACTAG+GGG | - | chr1.3:48249221-48249240 | MS.gene24048:CDS | 30.0% | |
| TAGCTCATGTCTAAATTGTT+AGG | - | chr1.3:48248177-48248196 | MS.gene24048:intron | 30.0% | |
| TCGTATAAAGTAACCTAGAA+AGG | + | chr1.3:48248041-48248060 | None:intergenic | 30.0% | |
| TTACCATCAGATGATATTTC+TGG | + | chr1.3:48250001-48250020 | None:intergenic | 30.0% | |
| ! | ATCTGAAGCTGATATTGATT+CGG | - | chr1.3:48249504-48249523 | MS.gene24048:CDS | 30.0% |
| ! | CAATATGAACAGATTTTGCA+AGG | - | chr1.3:48248737-48248756 | MS.gene24048:CDS | 30.0% |
| ! | TCTAGGTTACTTTATACGAT+TGG | - | chr1.3:48248042-48248061 | MS.gene24048:intron | 30.0% |
| ! | TGTCAAGAAATCTTGTTTGA+TGG | - | chr1.3:48249559-48249578 | MS.gene24048:CDS | 30.0% |
| !! | AATTTAGCACCGTTTGATTT+TGG | + | chr1.3:48248784-48248803 | None:intergenic | 30.0% |
| !! | GTCAAAACATTTCTAAGACA+TGG | + | chr1.3:48249620-48249639 | None:intergenic | 30.0% |
| !!! | GTAGAGCTCTGTTTTTTATT+TGG | + | chr1.3:48249914-48249933 | None:intergenic | 30.0% |
| !!! | TGAAAAAGTTTTGGGAATTC+TGG | + | chr1.3:48250482-48250501 | None:intergenic | 30.0% |
| !!! | TTGGTTTTAATTGTTGTTGC+AGG | - | chr1.3:48249671-48249690 | MS.gene24048:CDS | 30.0% |
| AAAAGAATGCAAAGCCTCAA+AGG | - | chr1.3:48249769-48249788 | MS.gene24048:intron | 35.0% | |
| AACATTAATAGCACGTAACC+TGG | + | chr1.3:48249846-48249865 | None:intergenic | 35.0% | |
| AAGGTGGGTAAGATAAACAA+AGG | - | chr1.3:48251061-48251080 | MS.gene24048:intron | 35.0% | |
| AAGTGAAAACCCTTACTTTC+TGG | + | chr1.3:48248120-48248139 | None:intergenic | 35.0% | |
| AAGTGAATAAGTGGAGAATC+CGG | + | chr1.3:48248440-48248459 | None:intergenic | 35.0% | |
| AATAAGAAGGATGAGAGTGA+AGG | + | chr1.3:48247980-48247999 | None:intergenic | 35.0% | |
| AATATATACCAGCCCAATGA+TGG | + | chr1.3:48251207-48251226 | None:intergenic | 35.0% | |
| ACAATGCATTGCAATATGCA+GGG | - | chr1.3:48248399-48248418 | MS.gene24048:intron | 35.0% | |
| ACTAACAGTTAGCAGTTTGT+TGG | - | chr1.3:48248932-48248951 | MS.gene24048:CDS | 35.0% | |
| AGGTGGGTAAGATAAACAAA+GGG | - | chr1.3:48251062-48251081 | MS.gene24048:intron | 35.0% | |
| AGTCTCGATATATAAGTCGT+TGG | - | chr1.3:48249652-48249671 | MS.gene24048:CDS | 35.0% | |
| ATAAGAAGGATGAGAGTGAA+GGG | + | chr1.3:48247979-48247998 | None:intergenic | 35.0% | |
| ATAAGTGTCAATGTCTTTCG+TGG | - | chr1.3:48249300-48249319 | MS.gene24048:intron | 35.0% | |
| CAAATTGCAGATACACTATC+CGG | + | chr1.3:48249541-48249560 | None:intergenic | 35.0% | |
| CACTTATTACAACAAACCTG+AGG | + | chr1.3:48249287-48249306 | None:intergenic | 35.0% | |
| CATCCAGAAATATCATCTGA+TGG | - | chr1.3:48249995-48250014 | MS.gene24048:intron | 35.0% | |
| CATGAATGACAATTCATGAG+AGG | + | chr1.3:48250780-48250799 | None:intergenic | 35.0% | |
| CCTGAATTTCTATAATCTCG+CGG | + | chr1.3:48251146-48251165 | None:intergenic | 35.0% | |
| GATATCTAATAATGGCAGCT+GGG | + | chr1.3:48251001-48251020 | None:intergenic | 35.0% | |
| GATTTGTGTCTCTCAAAAGA+AGG | - | chr1.3:48248685-48248704 | MS.gene24048:intron | 35.0% | |
| GGAAAATGCAAGAAACCATT+CGG | - | chr1.3:48249743-48249762 | MS.gene24048:intron | 35.0% | |
| GGAATAGTAAACACATTGTC+TGG | - | chr1.3:48250433-48250452 | MS.gene24048:intron | 35.0% | |
| GGTCTCAAAAAATCAAGATC+TGG | - | chr1.3:48250679-48250698 | MS.gene24048:intron | 35.0% | |
| GTTAGATGAAAACTTGGCTT+AGG | - | chr1.3:48248278-48248297 | MS.gene24048:intron | 35.0% | |
| TCTTCTGTAAAATCTCCACA+AGG | - | chr1.3:48250589-48250608 | MS.gene24048:intron | 35.0% | |
| TGATATCTAATAATGGCAGC+TGG | + | chr1.3:48251002-48251021 | None:intergenic | 35.0% | |
| TGTAAAATCTCCACAAGGAA+GGG | - | chr1.3:48250594-48250613 | MS.gene24048:intron | 35.0% | |
| ! | AGGTTACTTTATACGATTGG+TGG | - | chr1.3:48248045-48248064 | MS.gene24048:intron | 35.0% |
| ! | AGTCTTCGCTGAAAAAGTTT+TGG | + | chr1.3:48250491-48250510 | None:intergenic | 35.0% |
| ! | ATATGGTTTTCCTCCAAACT+GGG | - | chr1.3:48249450-48249469 | MS.gene24048:CDS | 35.0% |
| ! | ATTCCCTTTTGTGACTGAAT+GGG | + | chr1.3:48250418-48250437 | None:intergenic | 35.0% |
| ! | GAAGTCTTTTCCTACTTCTT+TGG | - | chr1.3:48250135-48250154 | MS.gene24048:CDS | 35.0% |
| ! | GTCTTCGCTGAAAAAGTTTT+GGG | + | chr1.3:48250490-48250509 | None:intergenic | 35.0% |
| ! | GTGCTATTAATGTTTGTCAG+CGG | - | chr1.3:48249852-48249871 | MS.gene24048:CDS | 35.0% |
| ! | GTTGATGTTACTTATGGTAG+TGG | - | chr1.3:48249803-48249822 | MS.gene24048:intron | 35.0% |
| ! | TATATGGTTTTCCTCCAAAC+TGG | - | chr1.3:48249449-48249468 | MS.gene24048:CDS | 35.0% |
| ! | TATTCCCTTTTGTGACTGAA+TGG | + | chr1.3:48250419-48250438 | None:intergenic | 35.0% |
| ! | TGGAGATTTTACAGAAGATG+CGG | + | chr1.3:48250587-48250606 | None:intergenic | 35.0% |
| ! | TTGCATTCTTTTGTACCGAA+TGG | + | chr1.3:48249761-48249780 | None:intergenic | 35.0% |
| ! | TTTAATTGTTGTTGCAGGTG+AGG | - | chr1.3:48249676-48249695 | MS.gene24048:CDS | 35.0% |
| !! | GTTTGGGTTATTTTGTAGGA+AGG | - | chr1.3:48250886-48250905 | MS.gene24048:intron | 35.0% |
| !!! | AAAACTTTTTCAGCGAAGAC+TGG | - | chr1.3:48250490-48250509 | MS.gene24048:intron | 35.0% |
| ACACCCATTCAGTCACAAAA+GGG | - | chr1.3:48250412-48250431 | MS.gene24048:intron | 40.0% | |
| ACAGTTGAAACAGAAGCAGT+TGG | - | chr1.3:48250538-48250557 | MS.gene24048:intron | 40.0% | |
| ACGGGACATGTCAATTAAGA+CGG | - | chr1.3:48250210-48250229 | MS.gene24048:CDS | 40.0% | |
| ACTGCAACCATTTCTTCCAA+TGG | - | chr1.3:48247905-48247924 | MS.gene24048:intron | 40.0% | |
| AGAAGTGGAAACTCGTGATT+CGG | - | chr1.3:48249940-48249959 | MS.gene24048:CDS | 40.0% | |
| AGTGAATAAGTGGAGAATCC+GGG | + | chr1.3:48248439-48248458 | None:intergenic | 40.0% | |
| AGTTTGAGTGCTAACTGTGA+TGG | - | chr1.3:48249378-48249397 | MS.gene24048:intron | 40.0% | |
| CAAACTCTTGATATCTGCTG+CGG | + | chr1.3:48248542-48248561 | None:intergenic | 40.0% | |
| CAATGCATTGCAATATGCAG+GGG | - | chr1.3:48248400-48248419 | MS.gene24048:intron | 40.0% | |
| CCGCGAGATTATAGAAATTC+AGG | - | chr1.3:48251143-48251162 | MS.gene24048:intron | 40.0% | |
| CTGTAAAATCTCCACAAGGA+AGG | - | chr1.3:48250593-48250612 | MS.gene24048:intron | 40.0% | |
| GACAATGCATTGCAATATGC+AGG | - | chr1.3:48248398-48248417 | MS.gene24048:intron | 40.0% | |
| GATACAAGTCACTCGAACAA+GGG | - | chr1.3:48250616-48250635 | MS.gene24048:intron | 40.0% | |
| GATTAACAGGGCAGAGATTT+AGG | - | chr1.3:48251494-48251513 | MS.gene24048:CDS | 40.0% | |
| GCATCTCTTCCAGAAAGTAA+GGG | - | chr1.3:48248108-48248127 | MS.gene24048:intron | 40.0% | |
| GTCAATGTTGTTCATGGTAG+TGG | - | chr1.3:48250238-48250257 | MS.gene24048:CDS | 40.0% | |
| GTTAGGTTAGAGTTCCAACT+AGG | - | chr1.3:48248194-48248213 | MS.gene24048:intron | 40.0% | |
| TAAGAAGGATGAGAGTGAAG+GGG | + | chr1.3:48247978-48247997 | None:intergenic | 40.0% | |
| TACACTATCCGGAATAGCAT+TGG | + | chr1.3:48249530-48249549 | None:intergenic | 40.0% | |
| TCCTACTTCTTTGGTATCAC+CGG | - | chr1.3:48250144-48250163 | MS.gene24048:CDS | 40.0% | |
| TCTTTATCTGGATGTGTTGC+CGG | + | chr1.3:48250334-48250353 | None:intergenic | 40.0% | |
| TGAGCATAACTCACTTGGTA+GGG | - | chr1.3:48248376-48248395 | MS.gene24048:intron | 40.0% | |
| TGGCTCGTTAAATCATCTCA+AGG | - | chr1.3:48248065-48248084 | MS.gene24048:intron | 40.0% | |
| TTCTTGTAGTTTCCGACGAA+CGG | - | chr1.3:48247937-48247956 | MS.gene24048:intron | 40.0% | |
| TTGGAAGAAATGGTTGCAGT+TGG | + | chr1.3:48247905-48247924 | None:intergenic | 40.0% | |
| TTGTGACACTTCAGCAGAAA+TGG | - | chr1.3:48248907-48248926 | MS.gene24048:CDS | 40.0% | |
| ! | ATGGTTTCTTGCATTTTCCC+AGG | + | chr1.3:48249742-48249761 | None:intergenic | 40.0% |
| ! | CAAACGGTGCTAAATTTGCA+AGG | - | chr1.3:48248788-48248807 | MS.gene24048:CDS | 40.0% |
| ! | CTTTTTACATTTGACCACCC+AGG | - | chr1.3:48251119-48251138 | MS.gene24048:intron | 40.0% |
| ! | GGAGATTTTACAGAAGATGC+GGG | + | chr1.3:48250586-48250605 | None:intergenic | 40.0% |
| ! | TCTGTTTCTCCAGAGTCATT+GGG | - | chr1.3:48250658-48250677 | MS.gene24048:intron | 40.0% |
| ! | TGGTTTCTTGCATTTTCCCA+GGG | + | chr1.3:48249741-48249760 | None:intergenic | 40.0% |
| ! | TTCTACCTCGCTTAGAGTTT+TGG | - | chr1.3:48250913-48250932 | MS.gene24048:intron | 40.0% |
| !! | AGTGGGGTTGATGTTACTTA+TGG | - | chr1.3:48249797-48249816 | MS.gene24048:intron | 40.0% |
| !! | GGAAAATGGTTTTACTCCTC+AGG | - | chr1.3:48249268-48249287 | MS.gene24048:CDS | 40.0% |
| !! | TGGGTTATTTTGTAGGAAGG+TGG | - | chr1.3:48250889-48250908 | MS.gene24048:intron | 40.0% |
| !!! | TTTTTGAGACCCAATGACTC+TGG | + | chr1.3:48250670-48250689 | None:intergenic | 40.0% |
| AAAGCCTCAAAGGAGATGAG+TGG | - | chr1.3:48249779-48249798 | MS.gene24048:intron | 45.0% | |
| AAGCCTCAAAGGAGATGAGT+GGG | - | chr1.3:48249780-48249799 | MS.gene24048:intron | 45.0% | |
| ACGAGTTTCCACTTCTGTTG+AGG | + | chr1.3:48249936-48249955 | None:intergenic | 45.0% | |
| AGAGCATAGCTTTCCCAGTT+TGG | + | chr1.3:48249466-48249485 | None:intergenic | 45.0% | |
| AGAGGCTCTTCACCATCATT+GGG | - | chr1.3:48251192-48251211 | MS.gene24048:intron | 45.0% | |
| AGATGCCAGAGATGGCTAAA+CGG | + | chr1.3:48248094-48248113 | None:intergenic | 45.0% | |
| AGGCATTCCTCGAAGATGAA+CGG | - | chr1.3:48250191-48250210 | MS.gene24048:CDS | 45.0% | |
| AGTAAACACATTGTCTGGGC+AGG | - | chr1.3:48250438-48250457 | MS.gene24048:intron | 45.0% | |
| ATATACCATCGGCAGTCTCA+AGG | + | chr1.3:48249208-48249227 | None:intergenic | 45.0% | |
| ATCAGCTTCAGATCCTTCTC+CGG | + | chr1.3:48249497-48249516 | None:intergenic | 45.0% | |
| ATGCTGAGTTAGTGGTGACA+AGG | + | chr1.3:48248888-48248907 | None:intergenic | 45.0% | |
| CAGAAGAAACAGCCTGTTAC+CGG | - | chr1.3:48250304-48250323 | MS.gene24048:intron | 45.0% | |
| CATGTCAATTAAGACGGGTG+AGG | - | chr1.3:48250216-48250235 | MS.gene24048:CDS | 45.0% | |
| CGCCAAGTGCCAAAATCAAA+CGG | - | chr1.3:48248772-48248791 | MS.gene24048:CDS | 45.0% | |
| CGGGACATGTCAATTAAGAC+GGG | - | chr1.3:48250211-48250230 | MS.gene24048:CDS | 45.0% | |
| CGTCGGAAACTACAAGAAGT+GGG | + | chr1.3:48247935-48247954 | None:intergenic | 45.0% | |
| GAAGAAATGGTTGCAGTTGG+AGG | + | chr1.3:48247902-48247921 | None:intergenic | 45.0% | |
| GACACCCATTCAGTCACAAA+AGG | - | chr1.3:48250411-48250430 | MS.gene24048:intron | 45.0% | |
| GATGGTGAAGAGCCTCTAAA+AGG | + | chr1.3:48251189-48251208 | None:intergenic | 45.0% | |
| GCGAAAATAGACATGGTACC+AGG | - | chr1.3:48249825-48249844 | MS.gene24048:intron | 45.0% | |
| GGATACAAGTCACTCGAACA+AGG | - | chr1.3:48250615-48250634 | MS.gene24048:intron | 45.0% | |
| GGCATCTCTTCCAGAAAGTA+AGG | - | chr1.3:48248107-48248126 | MS.gene24048:intron | 45.0% | |
| GGGCAGAGATTTAGGCATAA+TGG | - | chr1.3:48251502-48251521 | MS.gene24048:CDS | 45.0% | |
| GGTGAGGTCAATGTTGTTCA+TGG | - | chr1.3:48250232-48250251 | MS.gene24048:CDS | 45.0% | |
| GTCGGAAACTACAAGAAGTG+GGG | + | chr1.3:48247934-48247953 | None:intergenic | 45.0% | |
| GTGAATAAGTGGAGAATCCG+GGG | + | chr1.3:48248438-48248457 | None:intergenic | 45.0% | |
| GTGAGCATAACTCACTTGGT+AGG | - | chr1.3:48248375-48248394 | MS.gene24048:intron | 45.0% | |
| GTGAGTAAACAACCGTTCGT+CGG | + | chr1.3:48247952-48247971 | None:intergenic | 45.0% | |
| GTGTCAATGTCTTTCGTGGT+TGG | - | chr1.3:48249304-48249323 | MS.gene24048:intron | 45.0% | |
| GTGTCACAATGCTGAGTTAG+TGG | + | chr1.3:48248896-48248915 | None:intergenic | 45.0% | |
| TAGAGGCTCTTCACCATCAT+TGG | - | chr1.3:48251191-48251210 | MS.gene24048:intron | 45.0% | |
| TATACCATCGGCAGTCTCAA+GGG | + | chr1.3:48249207-48249226 | None:intergenic | 45.0% | |
| TCCGGTGATACCAAAGAAGT+AGG | + | chr1.3:48250148-48250167 | None:intergenic | 45.0% | |
| TCGGAAACTACAAGAAGTGG+GGG | + | chr1.3:48247933-48247952 | None:intergenic | 45.0% | |
| TCGTCGGAAACTACAAGAAG+TGG | + | chr1.3:48247936-48247955 | None:intergenic | 45.0% | |
| TGCTGAGTTAGTGGTGACAA+GGG | + | chr1.3:48248887-48248906 | None:intergenic | 45.0% | |
| TTCTATAATCTCGCGGTCCT+GGG | + | chr1.3:48251139-48251158 | None:intergenic | 45.0% | |
| TTTCTATAATCTCGCGGTCC+TGG | + | chr1.3:48251140-48251159 | None:intergenic | 45.0% | |
| ! | ACTCTTTTCCAAGGCTGGTA+AGG | + | chr1.3:48250368-48250387 | None:intergenic | 45.0% |
| ! | CAATGACTCTGGAGAAACAG+AGG | + | chr1.3:48250659-48250678 | None:intergenic | 45.0% |
| ! | CTCTGTTTCTCCAGAGTCAT+TGG | - | chr1.3:48250657-48250676 | MS.gene24048:intron | 45.0% |
| ! | GGTAGTGGCGAAAATAGACA+TGG | - | chr1.3:48249818-48249837 | MS.gene24048:intron | 45.0% |
| ! | GTGGAGATCTGGTCTTTATC+TGG | + | chr1.3:48250346-48250365 | None:intergenic | 45.0% |
| ! | TCCTCCATCACTCTTTTCCA+AGG | + | chr1.3:48250377-48250396 | None:intergenic | 45.0% |
| ! | TGACTTGTATCCCTTCCTTG+TGG | + | chr1.3:48250607-48250626 | None:intergenic | 45.0% |
| ! | TGATTCGGCCAATGCTATTC+CGG | - | chr1.3:48249519-48249538 | MS.gene24048:CDS | 45.0% |
| !! | AGCTATGCTCTAGAATGCAC+CGG | - | chr1.3:48249475-48249494 | MS.gene24048:CDS | 45.0% |
| !! | ATGTTGTTCATGGTAGTGGC+AGG | - | chr1.3:48250242-48250261 | MS.gene24048:CDS | 45.0% |
| !! | CACCGTTTGATTTTGGCACT+TGG | + | chr1.3:48248777-48248796 | None:intergenic | 45.0% |
| !!! | ACTTTTTCAGCGAAGACTGG+AGG | - | chr1.3:48250493-48250512 | MS.gene24048:intron | 45.0% |
| !! | AAAAATTAAAAATAAATTAC+AGG | - | chr1.3:48248814-48248833 | MS.gene24048:CDS | 5.0% |
| !! | AAAATTAAAAATAAATTACA+GGG | - | chr1.3:48248815-48248834 | MS.gene24048:CDS | 5.0% |
| !!! | ATTTTTTTTTTTTTTACTTT+TGG | - | chr1.3:48248607-48248626 | MS.gene24048:intron | 5.0% |
| AAACTCGCACACACACTGTG+AGG | + | chr1.3:48248221-48248240 | None:intergenic | 50.0% | |
| AACCCCACTCATCTCCTTTG+AGG | + | chr1.3:48249786-48249805 | None:intergenic | 50.0% | |
| AATGGTTGCAGTTGGAGGAG+TGG | + | chr1.3:48247897-48247916 | None:intergenic | 50.0% | |
| ACACACTGTGAGGTCCTAGT+TGG | + | chr1.3:48248211-48248230 | None:intergenic | 50.0% | |
| ACATGTCCCGTTCATCTTCG+AGG | + | chr1.3:48250201-48250220 | None:intergenic | 50.0% | |
| AGCCTCAAAGGAGATGAGTG+GGG | - | chr1.3:48249781-48249800 | MS.gene24048:intron | 50.0% | |
| CCAGCCTTGGAAAAGAGTGA+TGG | - | chr1.3:48250370-48250389 | MS.gene24048:intron | 50.0% | |
| GACCACGGGAGATTGCAATA+AGG | - | chr1.3:48250171-48250190 | MS.gene24048:CDS | 50.0% | |
| GAGCTCTACCTCAACAGAAG+TGG | - | chr1.3:48249925-48249944 | MS.gene24048:CDS | 50.0% | |
| GCATAGCTTTCCCAGTTTGG+AGG | + | chr1.3:48249463-48249482 | None:intergenic | 50.0% | |
| GCCTTGGAAAAGAGTGATGG+AGG | - | chr1.3:48250373-48250392 | MS.gene24048:intron | 50.0% | |
| GGAAACCGTTTAGCCATCTC+TGG | - | chr1.3:48248086-48248105 | MS.gene24048:intron | 50.0% | |
| GGCATTCCTCGAAGATGAAC+GGG | - | chr1.3:48250192-48250211 | MS.gene24048:CDS | 50.0% | |
| GGTATCACCGGATAAGACCA+CGG | - | chr1.3:48250156-48250175 | MS.gene24048:CDS | 50.0% | |
| GTATCACCGGATAAGACCAC+GGG | - | chr1.3:48250157-48250176 | MS.gene24048:CDS | 50.0% | |
| GTCGGTGAGCATAACTCACT+TGG | - | chr1.3:48248371-48248390 | MS.gene24048:intron | 50.0% | |
| TCAGGCAACACCAACGAAGT+AGG | + | chr1.3:48249713-48249732 | None:intergenic | 50.0% | |
| TCTGGAAGAGATGCCAGAGA+TGG | + | chr1.3:48248102-48248121 | None:intergenic | 50.0% | |
| TTGCGCCAAAACTCTAAGCG+AGG | + | chr1.3:48250921-48250940 | None:intergenic | 50.0% | |
| ! | CCATCACTCTTTTCCAAGGC+TGG | + | chr1.3:48250373-48250392 | None:intergenic | 50.0% |
| ! | CTTTTCCAAGGCTGGTAAGG+TGG | + | chr1.3:48250365-48250384 | None:intergenic | 50.0% |
| ! | GGAAAAGAGTGATGGAGGAC+TGG | - | chr1.3:48250378-48250397 | MS.gene24048:intron | 50.0% |
| ! | TGCCTTATTGCAATCTCCCG+TGG | + | chr1.3:48250176-48250195 | None:intergenic | 50.0% |
| ! | TGGCATTGGGTGAGAAGTGT+TGG | + | chr1.3:48250807-48250826 | None:intergenic | 50.0% |
| ! | TTTTCCCTTGAGACTGCCGA+TGG | - | chr1.3:48249200-48249219 | MS.gene24048:CDS | 50.0% |
| !! | CAATCTCCCGTGGTCTTATC+CGG | + | chr1.3:48250166-48250185 | None:intergenic | 50.0% |
| !! | CGGTAACAGGCTGTTTCTTC+TGG | + | chr1.3:48250306-48250325 | None:intergenic | 50.0% |
| ACAGCCTGTTACCGGAGATC+CGG | - | chr1.3:48250312-48250331 | MS.gene24048:intron | 55.0% | |
| AGGCTGGTAAGGTGGAGATC+TGG | + | chr1.3:48250357-48250376 | None:intergenic | 55.0% | |
| CTACGATGACCTCCAGATGC+AGG | + | chr1.3:48249887-48249906 | None:intergenic | 55.0% | |
| CTGCATCTGGAGGTCATCGT+AGG | - | chr1.3:48249885-48249904 | MS.gene24048:CDS | 55.0% | |
| GATCTCCACCTTACCAGCCT+TGG | - | chr1.3:48250357-48250376 | MS.gene24048:intron | 55.0% | |
| GCAGGAATAGACGTAGTGCC+CGG | - | chr1.3:48250260-48250279 | MS.gene24048:intron | 55.0% | |
| GCTCTTCACCATCATTGGGC+TGG | - | chr1.3:48251196-48251215 | MS.gene24048:intron | 55.0% | |
| TATAATCTCGCGGTCCTGGG+TGG | + | chr1.3:48251136-48251155 | None:intergenic | 55.0% | |
| TGGATGTGTTGCCGGATCTC+CGG | + | chr1.3:48250326-48250345 | None:intergenic | 55.0% | |
| !! | ACAAGAAGTGGGGGTGCCAT+TGG | + | chr1.3:48247924-48247943 | None:intergenic | 55.0% |
| !! | GCTCTAGAATGCACCGGAGA+AGG | - | chr1.3:48249481-48249500 | MS.gene24048:CDS | 55.0% |
| !! | GGGGGTGCCATTGGAAGAAA+TGG | + | chr1.3:48247915-48247934 | None:intergenic | 55.0% |
| !! | TTCGTTGGTGTTGCCTGACG+AGG | - | chr1.3:48249715-48249734 | MS.gene24048:intron | 55.0% |
| AAGCAGCAGCCTGCATCTGG+AGG | - | chr1.3:48249875-48249894 | MS.gene24048:CDS | 60.0% | |
| AGGGGCTGAGATTCGAACCC+CGG | - | chr1.3:48248418-48248437 | MS.gene24048:intron | 60.0% | |
| GAGCAGCGCACGCTGGAAAA+TGG | - | chr1.3:48249254-48249273 | MS.gene24048:CDS | 60.0% | |
| GTTGCCGGATCTCCGGTAAC+AGG | + | chr1.3:48250319-48250338 | None:intergenic | 60.0% | |
| ! | CATTTTCCCAGGGCCTCGTC+AGG | + | chr1.3:48249731-48249750 | None:intergenic | 60.0% |
| CATGAACGAGCAGCGCACGC+TGG | - | chr1.3:48249247-48249266 | MS.gene24048:CDS | 65.0% | |
| CGGAAGCAGCAGCCTGCATC+TGG | - | chr1.3:48249872-48249891 | MS.gene24048:CDS | 65.0% | |
| GTGTTGCCTGACGAGGCCCT+GGG | - | chr1.3:48249722-48249741 | MS.gene24048:intron | 65.0% | |
| ! | GGTGTTGCCTGACGAGGCCC+TGG | - | chr1.3:48249721-48249740 | MS.gene24048:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 48247884 | 48251532 | 48247884 | ID=MS.gene24048 |
| chr1.3 | mRNA | 48247884 | 48251532 | 48247884 | ID=MS.gene24048.t1;Parent=MS.gene24048 |
| chr1.3 | exon | 48251458 | 48251532 | 48251458 | ID=MS.gene24048.t1.exon1;Parent=MS.gene24048.t1 |
| chr1.3 | CDS | 48251458 | 48251532 | 48251458 | ID=cds.MS.gene24048.t1;Parent=MS.gene24048.t1 |
| chr1.3 | exon | 48251293 | 48251369 | 48251293 | ID=MS.gene24048.t1.exon2;Parent=MS.gene24048.t1 |
| chr1.3 | CDS | 48251293 | 48251369 | 48251293 | ID=cds.MS.gene24048.t1;Parent=MS.gene24048.t1 |
| chr1.3 | exon | 48250127 | 48250271 | 48250127 | ID=MS.gene24048.t1.exon3;Parent=MS.gene24048.t1 |
| chr1.3 | CDS | 48250127 | 48250271 | 48250127 | ID=cds.MS.gene24048.t1;Parent=MS.gene24048.t1 |
| chr1.3 | exon | 48249836 | 48249983 | 48249836 | ID=MS.gene24048.t1.exon4;Parent=MS.gene24048.t1 |
| chr1.3 | CDS | 48249836 | 48249983 | 48249836 | ID=cds.MS.gene24048.t1;Parent=MS.gene24048.t1 |
| chr1.3 | exon | 48249400 | 48249723 | 48249400 | ID=MS.gene24048.t1.exon5;Parent=MS.gene24048.t1 |
| chr1.3 | CDS | 48249400 | 48249723 | 48249400 | ID=cds.MS.gene24048.t1;Parent=MS.gene24048.t1 |
| chr1.3 | exon | 48248716 | 48249288 | 48248716 | ID=MS.gene24048.t1.exon6;Parent=MS.gene24048.t1 |
| chr1.3 | CDS | 48248716 | 48249288 | 48248716 | ID=cds.MS.gene24048.t1;Parent=MS.gene24048.t1 |
| chr1.3 | exon | 48248454 | 48248512 | 48248454 | ID=MS.gene24048.t1.exon7;Parent=MS.gene24048.t1 |
| chr1.3 | CDS | 48248454 | 48248512 | 48248454 | ID=cds.MS.gene24048.t1;Parent=MS.gene24048.t1 |
| chr1.3 | exon | 48247884 | 48247913 | 48247884 | ID=MS.gene24048.t1.exon8;Parent=MS.gene24048.t1 |
| chr1.3 | CDS | 48247884 | 48247913 | 48247884 | ID=cds.MS.gene24048.t1;Parent=MS.gene24048.t1 |
| Gene Sequence |
| Protein sequence |
