Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24086.t1 | PNY12007.1 | 86.8 | 379 | 46 | 1 | 1 | 375 | 1 | 379 | 2.30E-195 | 691.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24086.t1 | Q8LAH7 | 65.4 | 370 | 122 | 3 | 9 | 376 | 5 | 370 | 1.5e-142 | 507.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24086.t1 | A0A2K3P9Q7 | 86.8 | 379 | 46 | 1 | 1 | 375 | 1 | 379 | 1.7e-195 | 691.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050605 | MS.gene24086 | 0.802421 | 5.66E-49 | -1.69E-46 |
| MS.gene050750 | MS.gene24086 | 0.805651 | 1.20E-49 | -1.69E-46 |
| MS.gene050953 | MS.gene24086 | 0.807206 | 5.66E-50 | -1.69E-46 |
| MS.gene051368 | MS.gene24086 | 0.814763 | 1.31E-51 | -1.69E-46 |
| MS.gene052333 | MS.gene24086 | 0.844341 | 8.03E-59 | -1.69E-46 |
| MS.gene054405 | MS.gene24086 | 0.808551 | 2.93E-50 | -1.69E-46 |
| MS.gene055367 | MS.gene24086 | 0.828321 | 9.59E-55 | -1.69E-46 |
| MS.gene055701 | MS.gene24086 | 0.858014 | 1.10E-62 | -1.69E-46 |
| MS.gene05595 | MS.gene24086 | 0.800006 | 1.76E-48 | -1.69E-46 |
| MS.gene057156 | MS.gene24086 | -0.804157 | 2.47E-49 | -1.69E-46 |
| MS.gene059609 | MS.gene24086 | 0.826272 | 2.97E-54 | -1.69E-46 |
| MS.gene060011 | MS.gene24086 | 0.817475 | 3.23E-52 | -1.69E-46 |
| MS.gene061114 | MS.gene24086 | -0.816451 | 5.49E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24086.t1 | MTR_3g115600 | 75.946 | 370 | 83 | 3 | 7 | 376 | 1 | 364 | 0.0 | 591 |
| MS.gene24086.t1 | MTR_5g006800 | 67.213 | 366 | 118 | 2 | 10 | 375 | 6 | 369 | 0.0 | 525 |
| MS.gene24086.t1 | MTR_5g006710 | 66.942 | 363 | 112 | 4 | 13 | 375 | 9 | 363 | 0.0 | 506 |
| MS.gene24086.t1 | MTR_5g006750 | 65.110 | 364 | 123 | 3 | 14 | 375 | 10 | 371 | 1.58e-178 | 501 |
| MS.gene24086.t1 | MTR_5g006780 | 66.209 | 364 | 119 | 3 | 14 | 375 | 10 | 371 | 2.41e-177 | 498 |
| MS.gene24086.t1 | MTR_5g006740 | 65.470 | 362 | 123 | 2 | 14 | 375 | 6 | 365 | 4.10e-177 | 497 |
| MS.gene24086.t1 | MTR_5g006670 | 65.746 | 362 | 116 | 4 | 14 | 375 | 6 | 359 | 2.15e-176 | 495 |
| MS.gene24086.t1 | MTR_5g008040 | 60.916 | 371 | 140 | 3 | 4 | 374 | 5 | 370 | 2.64e-168 | 475 |
| MS.gene24086.t1 | MTR_5g006740 | 62.431 | 362 | 117 | 3 | 14 | 375 | 6 | 348 | 6.92e-162 | 457 |
| MS.gene24086.t1 | MTR_5g006720 | 57.068 | 382 | 122 | 4 | 5 | 375 | 2 | 352 | 1.84e-151 | 431 |
| MS.gene24086.t1 | MTR_4g125470 | 52.022 | 371 | 165 | 4 | 16 | 374 | 19 | 388 | 6.00e-135 | 391 |
| MS.gene24086.t1 | MTR_5g006730 | 75.926 | 108 | 26 | 0 | 14 | 121 | 10 | 117 | 1.77e-55 | 179 |
| MS.gene24086.t1 | MTR_3g096570 | 64.557 | 79 | 24 | 2 | 175 | 252 | 3 | 78 | 3.98e-26 | 105 |
| MS.gene24086.t1 | MTR_3g096562 | 58.333 | 84 | 32 | 1 | 169 | 252 | 162 | 242 | 5.53e-25 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24086.t1 | AT1G76690 | 64.171 | 374 | 128 | 3 | 6 | 377 | 4 | 373 | 0.0 | 508 |
| MS.gene24086.t1 | AT1G76680 | 65.229 | 371 | 123 | 3 | 9 | 377 | 5 | 371 | 0.0 | 508 |
| MS.gene24086.t1 | AT1G76680 | 61.111 | 396 | 123 | 4 | 9 | 377 | 5 | 396 | 2.54e-175 | 494 |
| MS.gene24086.t1 | AT1G09400 | 64.134 | 329 | 107 | 3 | 22 | 348 | 1 | 320 | 1.21e-156 | 443 |
| MS.gene24086.t1 | AT1G09400 | 65.056 | 269 | 83 | 3 | 82 | 348 | 2 | 261 | 1.55e-127 | 367 |
| MS.gene24086.t1 | AT2G06050 | 48.819 | 381 | 178 | 5 | 10 | 374 | 6 | 385 | 1.21e-125 | 367 |
| MS.gene24086.t1 | AT2G06050 | 48.819 | 381 | 178 | 5 | 10 | 374 | 6 | 385 | 1.21e-125 | 367 |
| MS.gene24086.t1 | AT2G06050 | 48.819 | 381 | 178 | 5 | 10 | 374 | 6 | 385 | 1.21e-125 | 367 |
| MS.gene24086.t1 | AT1G17990 | 58.781 | 279 | 102 | 4 | 8 | 285 | 1 | 267 | 4.28e-119 | 346 |
| MS.gene24086.t1 | AT1G18020 | 58.781 | 279 | 102 | 4 | 8 | 285 | 1 | 267 | 4.28e-119 | 346 |
| MS.gene24086.t1 | AT1G17990 | 56.272 | 279 | 101 | 5 | 8 | 285 | 1 | 259 | 1.43e-110 | 324 |
Find 107 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAGATAGTACTAGTTATTT+TGG | 0.113729 | 1.2:-57327 | None:intergenic |
| GTCCAAATGCCAGGCGTATT+TGG | 0.175163 | 1.2:-56325 | None:intergenic |
| ATACACACACGTACCATATT+TGG | 0.213055 | 1.2:-56443 | None:intergenic |
| CCTTTGAACACCTTCCTAAT+AGG | 0.291774 | 1.2:-57091 | None:intergenic |
| AATGGTCCTTGATGCCTATT+AGG | 0.301603 | 1.2:+57077 | MS.gene24086:CDS |
| GCTGCTGATCTAGTGGCTTA+TGG | 0.307172 | 1.2:+57175 | MS.gene24086:CDS |
| GGCTGAATCATTGAATCAAT+TGG | 0.309770 | 1.2:+56988 | MS.gene24086:CDS |
| AAAGGGACATTTATTGTTGC+TGG | 0.324243 | 1.2:+57109 | MS.gene24086:CDS |
| GACAGGATCATGCGTATAAA+AGG | 0.327954 | 1.2:-57278 | None:intergenic |
| GGATTTCATTTGTGCTTAAT+CGG | 0.331257 | 1.2:-56670 | None:intergenic |
| ACTAAGGGTGGCTTCTTGAT+TGG | 0.336328 | 1.2:+55952 | MS.gene24086:CDS |
| GGCTTGTTTGTGCATGATAT+TGG | 0.338072 | 1.2:-56590 | None:intergenic |
| GTGCGCCAAGTTCATGAAAA+AGG | 0.339105 | 1.2:+56379 | MS.gene24086:CDS |
| CTAAGGGTGGCTTCTTGATT+GGG | 0.342918 | 1.2:+55953 | MS.gene24086:CDS |
| TCCAAATGCCAGGCGTATTT+GGG | 0.350536 | 1.2:-56324 | None:intergenic |
| TATGACCTTGATCGCGTTAA+CGG | 0.364577 | 1.2:-55880 | None:intergenic |
| TTAAAGTTTCCCATCTTGTA+TGG | 0.364982 | 1.2:-55720 | None:intergenic |
| GACTCTGATCCTCAAGTATT+GGG | 0.377448 | 1.2:+56956 | MS.gene24086:CDS |
| CCATCTTGTATGGGGTGAGC+AGG | 0.381597 | 1.2:-55710 | None:intergenic |
| ACCCAAATACGCCTGGCATT+TGG | 0.384553 | 1.2:+56323 | MS.gene24086:CDS |
| TTGTTGCTGGAGGTTATGAT+AGG | 0.394121 | 1.2:+57122 | MS.gene24086:CDS |
| ATTAGCTGCAGCAGGATCAT+TGG | 0.397402 | 1.2:-56630 | None:intergenic |
| TTAAATTGTGTAACCATCCT+TGG | 0.400376 | 1.2:-57037 | None:intergenic |
| TCATGAACTTGGCGCACAAT+TGG | 0.406981 | 1.2:-56373 | None:intergenic |
| ACCATATTTGGATACTCTTC+CGG | 0.408173 | 1.2:-56431 | None:intergenic |
| GATATTGGAGGTTTACCTTC+AGG | 0.416474 | 1.2:-56575 | None:intergenic |
| TTCTTGATTGGGGAAGCATC+TGG | 0.424746 | 1.2:+55964 | MS.gene24086:CDS |
| GTATAAAAGGTAGTTGGATC+AGG | 0.427027 | 1.2:-57265 | None:intergenic |
| CTTGCTTGATCAATTTCTAA+AGG | 0.427817 | 1.2:+56781 | MS.gene24086:CDS |
| AACGACAGAGATGACGAGTA+TGG | 0.432506 | 1.2:+56812 | MS.gene24086:CDS |
| GCCGGAAGAGTATCCAAATA+TGG | 0.433682 | 1.2:+56430 | MS.gene24086:CDS |
| TATACGCATGATCCTGTCCT+TGG | 0.445992 | 1.2:+57283 | MS.gene24086:CDS |
| AATAGGCATCAAGGACCATT+TGG | 0.455116 | 1.2:-57074 | None:intergenic |
| TGGCATTTGGACAAGGGAAC+AGG | 0.464254 | 1.2:+56336 | MS.gene24086:CDS |
| CATCTTGTATGGGGTGAGCA+GGG | 0.471532 | 1.2:-55709 | None:intergenic |
| TTATTCTCAAAGATCAACTA+AGG | 0.473661 | 1.2:+55936 | MS.gene24086:CDS |
| GCTGAATCATTGAATCAATT+GGG | 0.474970 | 1.2:+56989 | MS.gene24086:CDS |
| AGAGATAGAAGGATGACTAA+AGG | 0.476048 | 1.2:+55654 | None:intergenic |
| GCAAGAAATGCCATGGAAGC+AGG | 0.479264 | 1.2:+56722 | MS.gene24086:CDS |
| GTAGAGATACATGGAGCTAA+TGG | 0.479754 | 1.2:+56755 | MS.gene24086:CDS |
| GTGCTTAATCGGCGAGGAGG+TGG | 0.494140 | 1.2:-56659 | None:intergenic |
| TTGGACAAGGGAACAGGTAG+AGG | 0.495054 | 1.2:+56342 | MS.gene24086:CDS |
| TAAAGTTTCCCATCTTGTAT+GGG | 0.501559 | 1.2:-55719 | None:intergenic |
| TATGATAGGAGTGAAGGAAA+TGG | 0.503378 | 1.2:+57136 | MS.gene24086:CDS |
| AGACTCTGATCCTCAAGTAT+TGG | 0.505390 | 1.2:+56955 | MS.gene24086:CDS |
| TCCATCAAAACCTGCTTCCA+TGG | 0.506298 | 1.2:-56732 | None:intergenic |
| TCAAGTATTGGGTATTTACA+TGG | 0.517434 | 1.2:+56967 | MS.gene24086:CDS |
| CCTGCTCACCCCATACAAGA+TGG | 0.518048 | 1.2:+55710 | MS.gene24086:CDS |
| TGTTCCCTTGTCCAAATGCC+AGG | 0.522788 | 1.2:-56334 | None:intergenic |
| GGATATTGATTAGCTGCAGC+AGG | 0.526559 | 1.2:-56638 | None:intergenic |
| CTTCCCACTTCGAGTGGTGA+AGG | 0.529500 | 1.2:+56859 | MS.gene24086:CDS |
| TTGGAGGTTTACCTTCAGGC+TGG | 0.534090 | 1.2:-56571 | None:intergenic |
| CCTATTAGGAAGGTGTTCAA+AGG | 0.534129 | 1.2:+57091 | MS.gene24086:CDS |
| TTAATACGACAGGATAGTGT+TGG | 0.537539 | 1.2:+55855 | MS.gene24086:intron |
| CACCTTCCTAATAGGCATCA+AGG | 0.537835 | 1.2:-57083 | None:intergenic |
| TTGGAGATATCTTTCTGAAG+AGG | 0.538385 | 1.2:-56611 | None:intergenic |
| TTGTTTGTGCATGATATTGG+AGG | 0.543879 | 1.2:-56587 | None:intergenic |
| CTATTAGGAAGGTGTTCAAA+GGG | 0.545620 | 1.2:+57092 | MS.gene24086:CDS |
| TCATGCGTATAAAAGGTAGT+TGG | 0.551693 | 1.2:-57271 | None:intergenic |
| AAAAGGTACCCAAATACGCC+TGG | 0.553805 | 1.2:+56316 | MS.gene24086:intron |
| ATCTTGTATGGGGTGAGCAG+GGG | 0.554437 | 1.2:-55708 | None:intergenic |
| TTTGATGGAGTAGAGATACA+TGG | 0.555461 | 1.2:+56746 | MS.gene24086:CDS |
| ATACGCCTGGCATTTGGACA+AGG | 0.556441 | 1.2:+56329 | MS.gene24086:CDS |
| TTCTGTCAACTTTGGCACGC+CGG | 0.558422 | 1.2:+56412 | MS.gene24086:CDS |
| ATGTGGTGCTGCTGATCTAG+TGG | 0.559206 | 1.2:+57168 | MS.gene24086:CDS |
| ACAAGTGTGACACCACCAAA+TGG | 0.560123 | 1.2:+57059 | MS.gene24086:CDS |
| TGGCGCCGTTAACGCGATCA+AGG | 0.570814 | 1.2:+55875 | MS.gene24086:CDS |
| GATGACTAAAGGAGAAGTAA+TGG | 0.579090 | 1.2:+55665 | None:intergenic |
| TAAGGGTGGCTTCTTGATTG+GGG | 0.580264 | 1.2:+55954 | MS.gene24086:CDS |
| GTCCTTGATGCCTATTAGGA+AGG | 0.582773 | 1.2:+57081 | MS.gene24086:CDS |
| ATGGATAATCACTATATCCA+AGG | 0.584629 | 1.2:-57300 | None:intergenic |
| TAATCACTATATCCAAGGAC+AGG | 0.584850 | 1.2:-57295 | None:intergenic |
| CTGCTCACCCCATACAAGAT+GGG | 0.585227 | 1.2:+55711 | MS.gene24086:CDS |
| AAAGTTTCCCATCTTGTATG+GGG | 0.586684 | 1.2:-55718 | None:intergenic |
| GAAACTTTAATCTATCTCAC+AGG | 0.587121 | 1.2:+55733 | MS.gene24086:CDS |
| AATTGCTGCAAGAAATGCCA+TGG | 0.589036 | 1.2:+56715 | MS.gene24086:CDS |
| AAAGGAGAAGTAATGGTCGA+TGG | 0.589838 | 1.2:+55672 | MS.gene24086:CDS |
| GGAGGTTATGATAGGAGTGA+AGG | 0.591271 | 1.2:+57130 | MS.gene24086:CDS |
| TCTCAAAGATCAACTAAGGG+TGG | 0.594762 | 1.2:+55940 | MS.gene24086:CDS |
| TTGTCGCTTCCCACTTCGAG+TGG | 0.596275 | 1.2:+56853 | MS.gene24086:CDS |
| ACTGCCTTCACCACTCGAAG+TGG | 0.598555 | 1.2:-56863 | None:intergenic |
| TGAAGTCATTGACAAGCATG+TGG | 0.600270 | 1.2:-56691 | None:intergenic |
| GGGACATTTATTGTTGCTGG+AGG | 0.600926 | 1.2:+57112 | MS.gene24086:CDS |
| AAGGCAGTAGCTGATGAGAT+CGG | 0.601265 | 1.2:+56878 | MS.gene24086:CDS |
| AGGCATCAAGGACCATTTGG+TGG | 0.602094 | 1.2:-57071 | None:intergenic |
| TGATGAGATCGGAGCTGACA+AGG | 0.615859 | 1.2:+56889 | MS.gene24086:CDS |
| TATAAAAGGTAGTTGGATCA+GGG | 0.616334 | 1.2:-57264 | None:intergenic |
| CAAGGGAACAGGTAGAGGCA+TGG | 0.618836 | 1.2:+56347 | MS.gene24086:CDS |
| TCATATGATTGAGCCAAGGA+TGG | 0.619695 | 1.2:+57024 | MS.gene24086:CDS |
| GGTGTGTCTAACACAGCACA+AGG | 0.629575 | 1.2:+55985 | MS.gene24086:CDS |
| TACGCCTGGCATTTGGACAA+GGG | 0.635846 | 1.2:+56330 | MS.gene24086:CDS |
| ATGTAAATACCCAATACTTG+AGG | 0.640485 | 1.2:-56965 | None:intergenic |
| TTTGTGCTTAATCGGCGAGG+AGG | 0.648362 | 1.2:-56662 | None:intergenic |
| TATTCTCAAAGATCAACTAA+GGG | 0.648427 | 1.2:+55937 | MS.gene24086:CDS |
| GATGTAGTATACCAGCCTGA+AGG | 0.656347 | 1.2:+56560 | MS.gene24086:intron |
| AAAAGGTAGTTGGATCAGGG+TGG | 0.658195 | 1.2:-57261 | None:intergenic |
| CTGCCTTCACCACTCGAAGT+GGG | 0.659608 | 1.2:-56862 | None:intergenic |
| GAGATCGGAGCTGACAAGGT+TGG | 0.665946 | 1.2:+56893 | MS.gene24086:CDS |
| TCATTTGTGCTTAATCGGCG+AGG | 0.670046 | 1.2:-56665 | None:intergenic |
| CAATCATTATAATCAGCGAA+AGG | 0.671533 | 1.2:-56929 | None:intergenic |
| GAATAATATGAAACAGCATG+AGG | 0.679009 | 1.2:-55919 | None:intergenic |
| GACAGAGATGACGAGTATGG+AGG | 0.692429 | 1.2:+56815 | MS.gene24086:CDS |
| TAAAAGATTTGAACTCAACG+TGG | 0.709690 | 1.2:+57228 | MS.gene24086:CDS |
| GAGCTGACAAGGTTGGTGTG+AGG | 0.727383 | 1.2:+56900 | MS.gene24086:CDS |
| ACTGTCATATGATTGAGCCA+AGG | 0.734502 | 1.2:+57020 | MS.gene24086:CDS |
| GGAAATGGTGCTATAGCATG+TGG | 0.744862 | 1.2:+57151 | MS.gene24086:CDS |
| GTGTGTCTAACACAGCACAA+GGG | 0.755183 | 1.2:+55986 | MS.gene24086:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATGATTAATAAAATTAC+CGG | - | chr1.2:56076-56095 | None:intergenic | 10.0% |
| !! | TAATAATATACACATATAAT+TGG | + | chr1.2:56538-56557 | MS.gene24086:intron | 10.0% |
| !! | AATTTATAAATTAATTCGAC+CGG | + | chr1.2:56054-56073 | MS.gene24086:intron | 15.0% |
| !!! | TTAATTTAATTTAATACGAC+AGG | + | chr1.2:55845-55864 | MS.gene24086:intron | 15.0% |
| !! | ATGAAATAAAATCCTTGTAA+TGG | - | chr1.2:56476-56495 | None:intergenic | 20.0% |
| !! | TGAAATAAAATCCTTGTAAT+GGG | - | chr1.2:56475-56494 | None:intergenic | 20.0% |
| !! | TTGATGAGTGAAAAAATTAA+TGG | + | chr1.2:56207-56226 | MS.gene24086:intron | 20.0% |
| ! | AAACAACGCCAAAATTAATT+GGG | + | chr1.2:56172-56191 | MS.gene24086:intron | 25.0% |
| ! | AACATGGATGATCAAATAAA+AGG | + | chr1.2:56299-56318 | MS.gene24086:intron | 25.0% |
| ! | TATTCTCAAAGATCAACTAA+GGG | + | chr1.2:55937-55956 | MS.gene24086:CDS | 25.0% |
| ! | TGTATATTTATCCCATTACA+AGG | + | chr1.2:56461-56480 | MS.gene24086:intron | 25.0% |
| ! | TTATTCTCAAAGATCAACTA+AGG | + | chr1.2:55936-55955 | MS.gene24086:CDS | 25.0% |
| !! | AAAATTAATGGAGCAGATTT+TGG | + | chr1.2:56219-56238 | MS.gene24086:intron | 25.0% |
| !!! | ATTTTTTCACTCATCAACAA+TGG | - | chr1.2:56204-56223 | None:intergenic | 25.0% |
| !!! | GTGTGTGTTTTTTTTCTTTT+TGG | + | chr1.2:55797-55816 | MS.gene24086:intron | 25.0% |
| ATGGATAATCACTATATCCA+AGG | - | chr1.2:57303-57322 | None:intergenic | 30.0% | |
| ATGTAAATACCCAATACTTG+AGG | - | chr1.2:56968-56987 | None:intergenic | 30.0% | |
| CAAACAACGCCAAAATTAAT+TGG | + | chr1.2:56171-56190 | MS.gene24086:intron | 30.0% | |
| CAATCATTATAATCAGCGAA+AGG | - | chr1.2:56932-56951 | None:intergenic | 30.0% | |
| CCAAAGTTGACAGAAAAATA+TGG | - | chr1.2:56407-56426 | None:intergenic | 30.0% | |
| CTTGCTTGATCAATTTCTAA+AGG | + | chr1.2:56781-56800 | MS.gene24086:CDS | 30.0% | |
| GAAACTTTAATCTATCTCAC+AGG | + | chr1.2:55733-55752 | MS.gene24086:CDS | 30.0% | |
| GAATAATATGAAACAGCATG+AGG | - | chr1.2:55922-55941 | None:intergenic | 30.0% | |
| GCTGAATCATTGAATCAATT+GGG | + | chr1.2:56989-57008 | MS.gene24086:CDS | 30.0% | |
| GGATTTCATTTGTGCTTAAT+CGG | - | chr1.2:56673-56692 | None:intergenic | 30.0% | |
| TAAAAGATTTGAACTCAACG+TGG | + | chr1.2:57228-57247 | MS.gene24086:CDS | 30.0% | |
| TAAAGTTTCCCATCTTGTAT+GGG | - | chr1.2:55722-55741 | None:intergenic | 30.0% | |
| TATAAAAGGTAGTTGGATCA+GGG | - | chr1.2:57267-57286 | None:intergenic | 30.0% | |
| TTAAAGTTTCCCATCTTGTA+TGG | - | chr1.2:55723-55742 | None:intergenic | 30.0% | |
| TTAAATTGTGTAACCATCCT+TGG | - | chr1.2:57040-57059 | None:intergenic | 30.0% | |
| ! | ACGTTGAGTTCAAATCTTTT+AGG | - | chr1.2:57229-57248 | None:intergenic | 30.0% |
| ! | CCATATTTTTCTGTCAACTT+TGG | + | chr1.2:56404-56423 | MS.gene24086:CDS | 30.0% |
| ! | GGAATTTGCCCAATTAATTT+TGG | - | chr1.2:56183-56202 | None:intergenic | 30.0% |
| !! | CAATTAATTTTGGCGTTGTT+TGG | - | chr1.2:56173-56192 | None:intergenic | 30.0% |
| !! | TCAAATCTTTTAGGAAGATC+TGG | - | chr1.2:57220-57239 | None:intergenic | 30.0% |
| !! | TCAAGTATTGGGTATTTACA+TGG | + | chr1.2:56967-56986 | MS.gene24086:CDS | 30.0% |
| !!! | ACGAGAATGCTTTTTTAACA+TGG | + | chr1.2:56283-56302 | MS.gene24086:intron | 30.0% |
| AAAGGGACATTTATTGTTGC+TGG | + | chr1.2:57109-57128 | MS.gene24086:CDS | 35.0% | |
| AAAGTTTCCCATCTTGTATG+GGG | - | chr1.2:55721-55740 | None:intergenic | 35.0% | |
| ACCATATTTGGATACTCTTC+CGG | - | chr1.2:56434-56453 | None:intergenic | 35.0% | |
| ATACACACACGTACCATATT+TGG | - | chr1.2:56446-56465 | None:intergenic | 35.0% | |
| GGCTGAATCATTGAATCAAT+TGG | + | chr1.2:56988-57007 | MS.gene24086:CDS | 35.0% | |
| GTATAAAAGGTAGTTGGATC+AGG | - | chr1.2:57268-57287 | None:intergenic | 35.0% | |
| TAATCACTATATCCAAGGAC+AGG | - | chr1.2:57298-57317 | None:intergenic | 35.0% | |
| TATGATAGGAGTGAAGGAAA+TGG | + | chr1.2:57136-57155 | MS.gene24086:CDS | 35.0% | |
| TCATGCGTATAAAAGGTAGT+TGG | - | chr1.2:57274-57293 | None:intergenic | 35.0% | |
| TTAATACGACAGGATAGTGT+TGG | + | chr1.2:55855-55874 | MS.gene24086:intron | 35.0% | |
| TTGTTTGTGCATGATATTGG+AGG | - | chr1.2:56590-56609 | None:intergenic | 35.0% | |
| TTTGATGGAGTAGAGATACA+TGG | + | chr1.2:56746-56765 | MS.gene24086:CDS | 35.0% | |
| ! | TTGGAGATATCTTTCTGAAG+AGG | - | chr1.2:56614-56633 | None:intergenic | 35.0% |
| !! | CTATTAGGAAGGTGTTCAAA+GGG | + | chr1.2:57092-57111 | MS.gene24086:CDS | 35.0% |
| AAAGGAGAAGTAATGGTCGA+TGG | + | chr1.2:55672-55691 | MS.gene24086:CDS | 40.0% | |
| AATAGGCATCAAGGACCATT+TGG | - | chr1.2:57077-57096 | None:intergenic | 40.0% | |
| AATGGTCCTTGATGCCTATT+AGG | + | chr1.2:57077-57096 | MS.gene24086:CDS | 40.0% | |
| AATTGCTGCAAGAAATGCCA+TGG | + | chr1.2:56715-56734 | MS.gene24086:CDS | 40.0% | |
| ACTGTCATATGATTGAGCCA+AGG | + | chr1.2:57020-57039 | MS.gene24086:CDS | 40.0% | |
| AGACTCTGATCCTCAAGTAT+TGG | + | chr1.2:56955-56974 | MS.gene24086:CDS | 40.0% | |
| CCTTTGAACACCTTCCTAAT+AGG | - | chr1.2:57094-57113 | None:intergenic | 40.0% | |
| GACAGGATCATGCGTATAAA+AGG | - | chr1.2:57281-57300 | None:intergenic | 40.0% | |
| GACTCTGATCCTCAAGTATT+GGG | + | chr1.2:56956-56975 | MS.gene24086:CDS | 40.0% | |
| GATATTGGAGGTTTACCTTC+AGG | - | chr1.2:56578-56597 | None:intergenic | 40.0% | |
| GTAGAGATACATGGAGCTAA+TGG | + | chr1.2:56755-56774 | MS.gene24086:CDS | 40.0% | |
| TATGACCTTGATCGCGTTAA+CGG | - | chr1.2:55883-55902 | None:intergenic | 40.0% | |
| TCATATGATTGAGCCAAGGA+TGG | + | chr1.2:57024-57043 | MS.gene24086:CDS | 40.0% | |
| TCTCAAAGATCAACTAAGGG+TGG | + | chr1.2:55940-55959 | MS.gene24086:CDS | 40.0% | |
| TGAAGTCATTGACAAGCATG+TGG | - | chr1.2:56694-56713 | None:intergenic | 40.0% | |
| TTGTTGCTGGAGGTTATGAT+AGG | + | chr1.2:57122-57141 | MS.gene24086:CDS | 40.0% | |
| ! | GGCTTGTTTGTGCATGATAT+TGG | - | chr1.2:56593-56612 | None:intergenic | 40.0% |
| !! | CCTATTAGGAAGGTGTTCAA+AGG | + | chr1.2:57091-57110 | MS.gene24086:CDS | 40.0% |
| !! | TGGCTCCTTTTTCATGAACT+TGG | - | chr1.2:56387-56406 | None:intergenic | 40.0% |
| AAAAGGTAGTTGGATCAGGG+TGG | - | chr1.2:57264-57283 | None:intergenic | 45.0% | |
| AACGACAGAGATGACGAGTA+TGG | + | chr1.2:56812-56831 | MS.gene24086:CDS | 45.0% | |
| AAGGCAGTAGCTGATGAGAT+CGG | + | chr1.2:56878-56897 | MS.gene24086:CDS | 45.0% | |
| ACAAGTGTGACACCACCAAA+TGG | + | chr1.2:57059-57078 | MS.gene24086:CDS | 45.0% | |
| ACTAAGGGTGGCTTCTTGAT+TGG | + | chr1.2:55952-55971 | MS.gene24086:CDS | 45.0% | |
| ATTAGCTGCAGCAGGATCAT+TGG | - | chr1.2:56633-56652 | None:intergenic | 45.0% | |
| CACCTTCCTAATAGGCATCA+AGG | - | chr1.2:57086-57105 | None:intergenic | 45.0% | |
| CTAAGGGTGGCTTCTTGATT+GGG | + | chr1.2:55953-55972 | MS.gene24086:CDS | 45.0% | |
| GATGTAGTATACCAGCCTGA+AGG | + | chr1.2:56560-56579 | MS.gene24086:intron | 45.0% | |
| GGAGGTTATGATAGGAGTGA+AGG | + | chr1.2:57130-57149 | MS.gene24086:CDS | 45.0% | |
| GGGACATTTATTGTTGCTGG+AGG | + | chr1.2:57112-57131 | MS.gene24086:CDS | 45.0% | |
| GTCCTTGATGCCTATTAGGA+AGG | + | chr1.2:57081-57100 | MS.gene24086:CDS | 45.0% | |
| GTGCGCCAAGTTCATGAAAA+AGG | + | chr1.2:56379-56398 | MS.gene24086:CDS | 45.0% | |
| GTGTGTCTAACACAGCACAA+GGG | + | chr1.2:55986-56005 | MS.gene24086:CDS | 45.0% | |
| TAAGGGTGGCTTCTTGATTG+GGG | + | chr1.2:55954-55973 | MS.gene24086:CDS | 45.0% | |
| TATACGCATGATCCTGTCCT+TGG | + | chr1.2:57283-57302 | MS.gene24086:CDS | 45.0% | |
| TCATGAACTTGGCGCACAAT+TGG | - | chr1.2:56376-56395 | None:intergenic | 45.0% | |
| TCATTTGTGCTTAATCGGCG+AGG | - | chr1.2:56668-56687 | None:intergenic | 45.0% | |
| TCCAAATGCCAGGCGTATTT+GGG | - | chr1.2:56327-56346 | None:intergenic | 45.0% | |
| TCCATCAAAACCTGCTTCCA+TGG | - | chr1.2:56735-56754 | None:intergenic | 45.0% | |
| ! | GGATATTGATTAGCTGCAGC+AGG | - | chr1.2:56641-56660 | None:intergenic | 45.0% |
| ! | GGCTTATGGACGTCTCTTTT+TGG | + | chr1.2:57189-57208 | MS.gene24086:CDS | 45.0% |
| !! | AAAAGGTACCCAAATACGCC+TGG | + | chr1.2:56316-56335 | MS.gene24086:intron | 45.0% |
| !! | GCCGGAAGAGTATCCAAATA+TGG | + | chr1.2:56430-56449 | MS.gene24086:CDS | 45.0% |
| !! | GGAAATGGTGCTATAGCATG+TGG | + | chr1.2:57151-57170 | MS.gene24086:CDS | 45.0% |
| !! | TTCTTGATTGGGGAAGCATC+TGG | + | chr1.2:55964-55983 | MS.gene24086:CDS | 45.0% |
| ACCCAAATACGCCTGGCATT+TGG | + | chr1.2:56323-56342 | MS.gene24086:CDS | 50.0% | |
| AGGCATCAAGGACCATTTGG+TGG | - | chr1.2:57074-57093 | None:intergenic | 50.0% | |
| ATACGCCTGGCATTTGGACA+AGG | + | chr1.2:56329-56348 | MS.gene24086:CDS | 50.0% | |
| ATCTTGTATGGGGTGAGCAG+GGG | - | chr1.2:55711-55730 | None:intergenic | 50.0% | |
| CATCTTGTATGGGGTGAGCA+GGG | - | chr1.2:55712-55731 | None:intergenic | 50.0% | |
| CTGCTCACCCCATACAAGAT+GGG | + | chr1.2:55711-55730 | MS.gene24086:CDS | 50.0% | |
| GACAGAGATGACGAGTATGG+AGG | + | chr1.2:56815-56834 | MS.gene24086:CDS | 50.0% | |
| GCAAGAAATGCCATGGAAGC+AGG | + | chr1.2:56722-56741 | MS.gene24086:CDS | 50.0% | |
| GCTGCTGATCTAGTGGCTTA+TGG | + | chr1.2:57175-57194 | MS.gene24086:CDS | 50.0% | |
| GGTGTGTCTAACACAGCACA+AGG | + | chr1.2:55985-56004 | MS.gene24086:CDS | 50.0% | |
| GTCCAAATGCCAGGCGTATT+TGG | - | chr1.2:56328-56347 | None:intergenic | 50.0% | |
| TACGCCTGGCATTTGGACAA+GGG | + | chr1.2:56330-56349 | MS.gene24086:CDS | 50.0% | |
| TGATGAGATCGGAGCTGACA+AGG | + | chr1.2:56889-56908 | MS.gene24086:CDS | 50.0% | |
| TGGCATTTGGACAAGGGAAC+AGG | + | chr1.2:56336-56355 | MS.gene24086:CDS | 50.0% | |
| TGTTCCCTTGTCCAAATGCC+AGG | - | chr1.2:56337-56356 | None:intergenic | 50.0% | |
| TTCTGTCAACTTTGGCACGC+CGG | + | chr1.2:56412-56431 | MS.gene24086:CDS | 50.0% | |
| TTGGACAAGGGAACAGGTAG+AGG | + | chr1.2:56342-56361 | MS.gene24086:CDS | 50.0% | |
| TTGGAGGTTTACCTTCAGGC+TGG | - | chr1.2:56574-56593 | None:intergenic | 50.0% | |
| TTTGTGCTTAATCGGCGAGG+AGG | - | chr1.2:56665-56684 | None:intergenic | 50.0% | |
| !! | ATGTGGTGCTGCTGATCTAG+TGG | + | chr1.2:57168-57187 | MS.gene24086:CDS | 50.0% |
| !! | GCCATGGAAGCAGGTTTTGA+TGG | + | chr1.2:56731-56750 | MS.gene24086:CDS | 50.0% |
| ACTGCCTTCACCACTCGAAG+TGG | - | chr1.2:56866-56885 | None:intergenic | 55.0% | |
| CAAGGGAACAGGTAGAGGCA+TGG | + | chr1.2:56347-56366 | MS.gene24086:CDS | 55.0% | |
| CCATCTTGTATGGGGTGAGC+AGG | - | chr1.2:55713-55732 | None:intergenic | 55.0% | |
| CCTGCTCACCCCATACAAGA+TGG | + | chr1.2:55710-55729 | MS.gene24086:CDS | 55.0% | |
| CTGCCTTCACCACTCGAAGT+GGG | - | chr1.2:56865-56884 | None:intergenic | 55.0% | |
| CTTCCCACTTCGAGTGGTGA+AGG | + | chr1.2:56859-56878 | MS.gene24086:CDS | 55.0% | |
| GAGATCGGAGCTGACAAGGT+TGG | + | chr1.2:56893-56912 | MS.gene24086:CDS | 55.0% | |
| ! | TTGTCGCTTCCCACTTCGAG+TGG | + | chr1.2:56853-56872 | MS.gene24086:CDS | 55.0% |
| !! | GAGCTGACAAGGTTGGTGTG+AGG | + | chr1.2:56900-56919 | MS.gene24086:CDS | 55.0% |
| GTGCTTAATCGGCGAGGAGG+TGG | - | chr1.2:56662-56681 | None:intergenic | 60.0% | |
| TGGCGCCGTTAACGCGATCA+AGG | + | chr1.2:55875-55894 | MS.gene24086:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 55666 | 57339 | 55666 | ID=MS.gene24086 |
| chr1.2 | mRNA | 55666 | 57339 | 55666 | ID=MS.gene24086.t1;Parent=MS.gene24086 |
| chr1.2 | exon | 55666 | 55754 | 55666 | ID=MS.gene24086.t1.exon1;Parent=MS.gene24086.t1 |
| chr1.2 | CDS | 55666 | 55754 | 55666 | ID=cds.MS.gene24086.t1;Parent=MS.gene24086.t1 |
| chr1.2 | exon | 55867 | 56007 | 55867 | ID=MS.gene24086.t1.exon2;Parent=MS.gene24086.t1 |
| chr1.2 | CDS | 55867 | 56007 | 55867 | ID=cds.MS.gene24086.t1;Parent=MS.gene24086.t1 |
| chr1.2 | exon | 56321 | 56451 | 56321 | ID=MS.gene24086.t1.exon3;Parent=MS.gene24086.t1 |
| chr1.2 | CDS | 56321 | 56451 | 56321 | ID=cds.MS.gene24086.t1;Parent=MS.gene24086.t1 |
| chr1.2 | exon | 56567 | 57339 | 56567 | ID=MS.gene24086.t1.exon4;Parent=MS.gene24086.t1 |
| chr1.2 | CDS | 56567 | 57339 | 56567 | ID=cds.MS.gene24086.t1;Parent=MS.gene24086.t1 |
| Gene Sequence |
| Protein sequence |
