AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24179

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24179.t1 MTR_1g024025 96.524 863 27 2 1 863 1 860 0.0 1741
MS.gene24179.t1 MTR_1g024025 78.947 361 23 2 503 863 958 1265 0.0 561
MS.gene24179.t1 MTR_1g024025 59.218 179 31 5 220 389 846 991 3.07e-40 161
MS.gene24179.t1 MTR_4g124900 73.178 343 89 3 35 376 15 355 5.45e-168 517
MS.gene24179.t1 MTR_4g124900 39.171 217 121 4 634 849 856 1062 1.12e-33 140
MS.gene24179.t1 MTR_2g018690 67.847 367 114 3 35 398 15 380 6.12e-168 511
MS.gene24179.t1 MTR_4g124900 73.178 343 89 3 35 376 15 355 7.00e-168 517
MS.gene24179.t1 MTR_4g124900 39.171 217 121 4 634 849 879 1085 1.25e-33 140
MS.gene24179.t1 MTR_5g076270 68.120 367 113 3 35 398 16 381 7.03e-168 509
MS.gene24179.t1 MTR_5g076270 33.484 221 103 5 645 862 641 820 9.45e-26 114
MS.gene24179.t1 MTR_3g064050 68.219 365 112 3 37 398 20 383 4.65e-167 507
MS.gene24179.t1 MTR_3g064050 42.763 152 84 2 712 862 679 828 3.96e-27 119
MS.gene24179.t1 MTR_2g043250 70.845 343 97 3 35 376 15 355 2.74e-162 502
MS.gene24179.t1 MTR_2g043250 60.952 105 41 0 745 849 974 1078 1.16e-32 137
MS.gene24179.t1 MTR_8g079492 66.757 367 117 4 35 398 15 379 1.11e-160 492
MS.gene24179.t1 MTR_8g079492 50.806 124 61 0 739 862 763 886 9.61e-31 130
MS.gene24179.t1 MTR_8g079492 66.757 367 117 4 35 398 15 379 1.17e-160 492
MS.gene24179.t1 MTR_8g079492 50.806 124 61 0 739 862 764 887 9.96e-31 130
MS.gene24179.t1 MTR_8g101360 68.343 338 106 1 40 376 28 365 2.95e-150 470
MS.gene24179.t1 MTR_8g101360 45.283 159 77 4 696 849 923 1076 9.04e-34 140
MS.gene24179.t1 MTR_8g079492 67.114 298 94 3 104 398 1 297 3.53e-127 402
MS.gene24179.t1 MTR_8g079492 50.806 124 61 0 739 862 681 804 7.58e-31 130
MS.gene24179.t1 MTR_8g100050 53.846 338 153 3 40 376 56 391 5.81e-119 378
MS.gene24179.t1 MTR_2g005240 53.846 338 154 2 39 376 19 354 1.20e-118 375
MS.gene24179.t1 MTR_2g005240 48.387 93 44 3 756 846 546 636 9.82e-18 88.6
MS.gene24179.t1 MTR_8g100050 53.687 339 154 3 39 376 55 391 5.46e-118 378
MS.gene24179.t1 MTR_8g100050 42.857 91 50 2 757 846 710 799 5.36e-15 80.1
MS.gene24179.t1 MTR_2g093740 52.137 351 153 6 43 381 56 403 4.74e-112 358
MS.gene24179.t1 MTR_2g093740 52.137 351 153 6 43 381 56 403 2.02e-111 358
MS.gene24179.t1 MTR_2g093740 47.143 70 35 2 757 825 682 750 4.04e-14 77.0
MS.gene24179.t1 MTR_8g027440 51.009 347 165 4 31 376 16 358 2.15e-111 356
MS.gene24179.t1 MTR_8g027440 41.593 113 57 4 747 855 545 652 1.47e-15 81.6
MS.gene24179.t1 MTR_2g093740 52.137 351 153 6 43 381 56 403 4.49e-111 359
MS.gene24179.t1 MTR_2g093740 42.308 104 58 2 757 859 682 784 5.58e-18 89.7
MS.gene24179.t1 MTR_2g093740 50.275 364 153 7 43 381 56 416 2.27e-108 349
MS.gene24179.t1 MTR_2g093740 50.275 364 153 7 43 381 56 416 1.39e-107 348
MS.gene24179.t1 MTR_2g093740 47.143 70 35 2 757 825 695 763 4.38e-14 77.0
MS.gene24179.t1 MTR_2g093740 50.275 364 153 7 43 381 56 416 1.97e-107 350
MS.gene24179.t1 MTR_2g093740 42.308 104 58 2 757 859 695 797 5.90e-18 89.4
MS.gene24179.t1 MTR_2g014770 50.867 346 147 6 43 376 53 387 1.72e-105 338
MS.gene24179.t1 MTR_4g060460 51.156 346 154 7 43 376 54 396 3.70e-105 343
MS.gene24179.t1 MTR_4g060460 45.055 91 48 2 757 846 658 747 3.19e-18 90.1
MS.gene24179.t1 MTR_4g060460 49.857 349 154 6 43 376 54 396 3.71e-105 343
MS.gene24179.t1 MTR_4g060460 45.055 91 48 2 757 846 663 752 2.89e-18 90.5
MS.gene24179.t1 MTR_2g014770 50.867 346 147 6 43 376 53 387 1.10e-104 338
MS.gene24179.t1 MTR_4g021580 50.877 342 153 7 41 376 17 349 7.06e-104 335
MS.gene24179.t1 MTR_4g088210 47.721 373 157 8 43 393 38 394 8.74e-104 337
MS.gene24179.t1 MTR_4g088210 47.721 373 157 8 43 393 38 394 1.54e-103 337
MS.gene24179.t1 MTR_4g021580 50.877 342 153 7 41 376 17 349 1.60e-103 335
MS.gene24179.t1 MTR_4g021580 41.441 111 59 4 750 859 550 655 1.51e-15 81.6
MS.gene24179.t1 MTR_7g062540 47.384 344 174 5 35 376 6 344 2.51e-100 327
MS.gene24179.t1 MTR_7g062540 42.857 91 49 2 757 846 570 658 1.69e-14 78.2
MS.gene24179.t1 MTR_2g093740 54.032 248 112 2 135 381 27 273 2.37e-83 280
MS.gene24179.t1 MTR_2g093740 47.143 70 35 2 757 825 552 620 3.08e-14 77.0
MS.gene24179.t1 MTR_2g093740 54.032 248 112 2 135 381 27 273 3.95e-83 281
MS.gene24179.t1 MTR_2g093740 42.308 104 58 2 757 859 552 654 3.86e-18 89.7
MS.gene24179.t1 MTR_2g094570 41.005 378 176 8 38 376 6 375 8.51e-80 271
MS.gene24179.t1 MTR_2g093740 51.341 261 112 3 135 381 27 286 1.01e-79 270
MS.gene24179.t1 MTR_2g093740 47.143 70 35 2 757 825 565 633 3.52e-14 77.0
MS.gene24179.t1 MTR_2g094570 41.005 378 176 8 38 376 6 375 1.26e-79 272
MS.gene24179.t1 MTR_2g093740 51.341 261 112 3 135 381 27 286 1.48e-79 271
MS.gene24179.t1 MTR_2g093740 42.308 104 58 2 757 859 565 667 4.38e-18 89.7
MS.gene24179.t1 MTR_2g094570 41.005 378 176 8 38 376 62 431 4.07e-79 272
MS.gene24179.t1 MTR_1g064430 37.984 387 187 6 36 376 20 399 4.65e-79 270
MS.gene24179.t1 MTR_1g064430 37.984 387 187 6 36 376 33 412 6.09e-79 270
MS.gene24179.t1 MTR_4g058930 40.625 384 171 8 40 376 9 382 7.69e-78 266
MS.gene24179.t1 MTR_4g058930 40.625 384 171 8 40 376 9 382 2.00e-77 266
MS.gene24179.t1 MTR_1g094960 38.442 398 195 10 38 394 14 402 5.50e-77 263
MS.gene24179.t1 MTR_7g101280 35.437 412 191 10 36 385 24 422 1.07e-70 246
MS.gene24179.t1 MTR_0041s0110 35.437 412 191 10 36 385 24 422 1.07e-70 246
MS.gene24179.t1 MTR_7g101275 38.050 318 177 6 52 361 1 306 1.57e-66 228
MS.gene24179.t1 MTR_3g073420 36.951 387 200 7 39 387 15 395 2.27e-66 233
MS.gene24179.t1 MTR_8g446900 41.751 297 159 7 84 376 2 288 5.62e-66 225
MS.gene24179.t1 MTR_0041s0120 34.835 333 179 8 52 361 1 318 2.34e-58 206
MS.gene24179.t1 MTR_5g061220 33.176 425 229 14 38 426 14 419 3.51e-57 205
MS.gene24179.t1 MTR_5g040880 32.494 437 244 15 37 457 5 406 6.86e-56 202
MS.gene24179.t1 MTR_5g082140 34.037 379 212 13 38 394 7 369 3.51e-53 192
MS.gene24179.t1 MTR_1g058210 32.153 367 221 10 38 394 7 355 2.15e-49 181
MS.gene24179.t1 MTR_2g024430 35.328 351 180 14 43 376 20 340 1.35e-47 177
MS.gene24179.t1 MTR_3g064050 62.329 146 54 1 254 398 1 146 9.93e-47 177
MS.gene24179.t1 MTR_3g064050 42.763 152 84 2 712 862 442 591 2.26e-27 118
MS.gene24179.t1 MTR_2g006270 33.628 339 205 10 43 376 13 336 8.77e-44 165
MS.gene24179.t1 MTR_2g006380 30.636 346 207 12 40 376 17 338 4.22e-41 157
MS.gene24179.t1 MTR_5g040740 32.622 328 186 11 40 355 9 313 1.97e-40 154
MS.gene24179.t1 MTR_5g060630 31.658 398 212 16 38 396 7 383 1.29e-38 151
MS.gene24179.t1 MTR_5g460740 31.658 398 212 16 38 396 7 383 1.29e-38 151
MS.gene24179.t1 MTR_5g032260 51.656 151 64 2 247 397 30 171 9.98e-38 146
MS.gene24179.t1 MTR_5g074840 47.059 187 63 4 125 307 7 161 3.85e-36 134
MS.gene24179.t1 MTR_5g060780 29.107 347 216 10 40 376 9 335 6.92e-33 132
MS.gene24179.t1 MTR_5g460920 29.226 349 213 12 40 376 9 335 1.26e-32 131
MS.gene24179.t1 MTR_5g061890 29.107 347 216 10 40 376 9 335 4.47e-32 129
MS.gene24179.t1 MTR_5g062970 35.000 200 121 4 39 235 34 227 4.58e-32 125
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24179.t1 AT1G19850 59.508 894 282 22 19 862 32 895 0.0 968
MS.gene24179.t1 AT1G19850 59.508 894 282 22 19 862 21 884 0.0 967
MS.gene24179.t1 AT1G30330 67.925 371 115 3 31 398 11 380 5.94e-168 512
MS.gene24179.t1 AT1G30330 51.667 120 58 0 737 856 774 893 4.83e-31 131
MS.gene24179.t1 AT1G30330 67.655 371 116 3 31 398 13 382 4.43e-167 509
MS.gene24179.t1 AT1G30330 51.667 120 58 0 737 856 776 895 4.52e-31 131
MS.gene24179.t1 AT1G30330 67.655 371 116 3 31 398 13 382 4.43e-167 509
MS.gene24179.t1 AT1G30330 51.667 120 58 0 737 856 776 895 4.52e-31 131
MS.gene24179.t1 AT1G19220 68.633 373 109 5 35 403 15 383 3.44e-166 512
MS.gene24179.t1 AT1G19220 43.976 166 85 4 687 849 890 1050 6.12e-32 134
MS.gene24179.t1 AT5G37020 66.846 371 118 4 31 398 11 379 2.51e-165 500
MS.gene24179.t1 AT5G37020 53.623 69 32 0 757 825 705 773 8.54e-18 89.0
MS.gene24179.t1 AT5G37020 66.846 371 118 4 31 398 11 379 8.86e-165 500
MS.gene24179.t1 AT5G37020 51.613 93 45 0 757 849 705 797 2.30e-24 110
MS.gene24179.t1 AT5G20730 70.554 343 98 3 35 376 16 356 7.73e-159 495
MS.gene24179.t1 AT5G20730 59.406 101 41 0 749 849 1029 1129 1.95e-31 133
MS.gene24179.t1 AT5G20730 70.349 344 98 4 35 376 16 357 1.90e-157 491
MS.gene24179.t1 AT5G20730 59.406 101 41 0 749 849 1030 1130 1.85e-31 133
MS.gene24179.t1 AT5G20730 70.349 344 98 4 35 376 16 357 5.26e-157 490
MS.gene24179.t1 AT5G20730 59.406 101 41 0 749 849 1030 1130 2.06e-31 133
MS.gene24179.t1 AT5G62000 56.140 342 141 4 39 376 57 393 9.13e-123 392
MS.gene24179.t1 AT5G62000 37.931 145 79 4 706 845 683 821 2.43e-18 90.9
MS.gene24179.t1 AT5G62000 56.140 342 141 4 39 376 57 393 9.13e-123 392
MS.gene24179.t1 AT5G62000 37.931 145 79 4 706 845 683 821 2.43e-18 90.9
MS.gene24179.t1 AT5G62000 56.140 342 141 4 39 376 57 393 9.13e-123 392
MS.gene24179.t1 AT5G62000 37.931 145 79 4 706 845 683 821 2.43e-18 90.9
MS.gene24179.t1 AT5G62000 56.140 342 141 4 39 376 57 393 9.13e-123 392
MS.gene24179.t1 AT5G62000 37.931 145 79 4 706 845 683 821 2.43e-18 90.9
MS.gene24179.t1 AT5G62000 56.140 342 141 4 39 376 57 393 1.18e-122 391
MS.gene24179.t1 AT5G62000 35.838 173 88 6 706 861 683 849 1.02e-18 92.0
MS.gene24179.t1 AT5G37020 65.614 285 94 3 117 398 1 284 5.19e-118 375
MS.gene24179.t1 AT5G37020 51.613 93 45 0 757 849 610 702 1.41e-24 110
MS.gene24179.t1 AT1G59750 53.216 342 150 4 39 376 18 353 1.99e-115 367
MS.gene24179.t1 AT1G59750 48.039 102 49 3 756 855 541 640 6.15e-19 92.4
MS.gene24179.t1 AT1G59750 53.216 342 150 4 39 376 18 353 1.99e-115 367
MS.gene24179.t1 AT1G59750 48.039 102 49 3 756 855 541 640 6.15e-19 92.4
MS.gene24179.t1 AT1G59750 53.216 342 150 4 39 376 18 353 2.08e-115 366
MS.gene24179.t1 AT1G59750 48.039 102 49 3 756 855 536 635 6.64e-19 92.4
MS.gene24179.t1 AT1G59750 53.216 342 150 4 39 376 18 353 2.08e-115 366
MS.gene24179.t1 AT1G59750 48.039 102 49 3 756 855 538 637 6.55e-19 92.4
MS.gene24179.t1 AT2G46530 51.429 350 162 6 40 386 18 362 2.87e-111 353
MS.gene24179.t1 AT2G46530 40.000 95 54 2 757 850 490 582 2.01e-14 77.8
MS.gene24179.t1 AT2G46530 52.367 338 155 5 40 376 39 371 4.46e-111 353
MS.gene24179.t1 AT2G46530 40.000 95 54 2 757 850 511 603 2.46e-14 77.4
MS.gene24179.t1 AT3G61830 52.212 339 154 6 40 376 22 354 9.57e-110 350
MS.gene24179.t1 AT3G61830 46.739 92 44 3 757 846 489 577 8.62e-15 79.0
MS.gene24179.t1 AT5G60450 50.838 358 161 7 35 381 33 386 3.16e-108 350
MS.gene24179.t1 AT5G60450 38.835 103 61 2 757 858 641 742 1.87e-16 84.7
MS.gene24179.t1 AT4G23980 52.326 344 147 6 40 376 9 342 1.59e-107 345
MS.gene24179.t1 AT4G23980 46.154 91 46 2 757 846 521 609 2.24e-15 80.9
MS.gene24179.t1 AT4G23980 52.326 344 147 6 40 376 9 342 1.70e-107 345
MS.gene24179.t1 AT4G23980 46.154 91 46 2 757 846 523 611 2.29e-15 80.9
MS.gene24179.t1 AT5G60450 51.275 353 157 7 40 381 62 410 1.92e-107 349
MS.gene24179.t1 AT5G60450 38.835 103 61 2 757 858 665 766 2.09e-16 84.3
MS.gene24179.t1 AT2G33860 49.284 349 158 4 43 381 54 393 2.89e-103 333
MS.gene24179.t1 AT3G61830 51.623 308 141 6 71 376 2 303 2.32e-94 307
MS.gene24179.t1 AT3G61830 46.739 92 44 3 757 846 438 526 6.74e-15 79.0
MS.gene24179.t1 AT1G34410 44.737 342 181 5 35 376 19 352 3.02e-93 306
MS.gene24179.t1 AT1G34410 40.909 88 49 2 757 843 511 596 4.76e-12 70.1
MS.gene24179.t1 AT1G35540 43.860 342 184 6 35 376 19 352 5.92e-91 300
MS.gene24179.t1 AT1G35540 40.000 90 51 2 757 845 510 597 2.02e-12 71.2
MS.gene24179.t1 AT1G35240 43.567 342 185 5 35 376 19 352 6.35e-90 296
MS.gene24179.t1 AT1G35240 42.045 88 48 2 757 843 497 582 2.97e-12 70.9
MS.gene24179.t1 AT1G35520 44.611 334 177 6 43 376 27 352 2.92e-88 292
MS.gene24179.t1 AT1G35520 40.741 81 45 2 757 836 511 589 2.78e-11 67.8
MS.gene24179.t1 AT1G34310 43.567 342 185 6 35 376 19 352 2.06e-87 290
MS.gene24179.t1 AT1G34310 39.506 81 46 2 757 836 511 589 6.58e-11 66.6
MS.gene24179.t1 AT1G34390 44.737 342 179 7 35 376 19 350 1.69e-85 285
MS.gene24179.t1 AT1G34170 41.071 336 188 6 43 376 25 352 3.42e-80 268
MS.gene24179.t1 AT2G46530 50.545 275 128 6 116 386 5 275 2.09e-78 263
MS.gene24179.t1 AT2G46530 40.000 95 54 2 757 850 403 495 1.12e-14 78.2
MS.gene24179.t1 AT2G33860 54.661 236 106 1 146 381 2 236 5.41e-78 260
MS.gene24179.t1 AT2G28350 38.760 387 179 8 38 376 5 381 1.66e-77 265
MS.gene24179.t1 AT2G28350 38.760 387 179 8 38 376 5 381 2.39e-77 265
MS.gene24179.t1 AT4G30080 39.043 397 188 11 35 389 11 395 4.94e-77 264
MS.gene24179.t1 AT1G34170 38.988 336 169 5 43 376 25 326 4.54e-74 251
MS.gene24179.t1 AT1G34170 38.988 336 169 5 43 376 25 326 2.94e-73 250
MS.gene24179.t1 AT1G77850 36.074 377 192 9 37 376 13 377 1.11e-59 214
MS.gene24179.t1 AT1G77850 36.170 376 191 9 38 376 14 377 1.58e-59 214
MS.gene24179.t1 AT1G43950 44.076 211 111 5 35 245 19 222 1.40e-47 169

Find 174 sgRNAs with CRISPR-Local

Find 313 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACAATGAATGCATATTTA+AGG 0.124934 1.2:-1235502 None:intergenic
CTTCTTATTCTGCAGATATA+TGG 0.173372 1.2:+1234764 MS.gene24179:intron
GCCGTTGCAATCCGGATATT+TGG 0.177793 1.2:+1235120 MS.gene24179:CDS
AAATACAGAAAATCTGTTTA+TGG 0.194457 1.2:+1234595 MS.gene24179:CDS
GGAAAGATGAAAAGGCTTTC+TGG 0.205659 1.2:-1235073 None:intergenic
CATAATTATCCCACACTTCT+TGG 0.212825 1.2:-1235908 None:intergenic
AGACATTAAATTCAGAATTA+TGG 0.240617 1.2:+1232549 MS.gene24179:CDS
TTTATTAAAGTACCTGAAAA+TGG 0.241577 1.2:+1235258 MS.gene24179:CDS
TTTGATTATGATATGTTAAT+TGG 0.247549 1.2:-1235665 None:intergenic
TTAGAACCAGGCCACCTTAA+AGG 0.260988 1.2:-1234816 None:intergenic
TGCATATTTAAGGTATTATT+AGG 0.267223 1.2:-1235492 None:intergenic
AGCAAAATAGGGTTAGTGTT+TGG 0.311735 1.2:+1235038 MS.gene24179:CDS
GCAAAATAGGGTTAGTGTTT+GGG 0.321539 1.2:+1235039 MS.gene24179:CDS
TTGTTGCATGATAGGTAAAA+AGG 0.323540 1.2:-1235376 None:intergenic
CACCCTCAAGATTGCATGAT+TGG 0.327864 1.2:+1236095 MS.gene24179:CDS
CGCGCAATTGAATGCATGTT+TGG 0.329869 1.2:+1236483 MS.gene24179:CDS
TTCTAAGTGGCGAAATATTC+AGG 0.333372 1.2:+1234833 MS.gene24179:CDS
CTGAATGACACAAAAGGTTC+TGG 0.338918 1.2:+1236519 MS.gene24179:CDS
TGCTTGTTGGAGATGATCCT+TGG 0.341166 1.2:+1236580 MS.gene24179:CDS
GTCTGTTTGTCGGCTCAAAA+AGG 0.342912 1.2:+1233991 MS.gene24179:CDS
TTCTTATTCTGCAGATATAT+GGG 0.354261 1.2:+1234765 MS.gene24179:intron
TGAGCAAAAGTCGTCGAAAA+TGG 0.355292 1.2:-1236051 None:intergenic
GGTGTGGTGATAAGCAAAAT+AGG 0.358353 1.2:+1235026 MS.gene24179:CDS
CCGTTGCAATCCGGATATTT+GGG 0.363692 1.2:+1235121 MS.gene24179:CDS
GATGGAAGACTAGGGTAGTT+TGG 0.373410 1.2:-1232872 None:intergenic
GCATAATCTTGTTGCATGAT+AGG 0.375254 1.2:-1235384 None:intergenic
AATACAGAAAATCTGTTTAT+GGG 0.375476 1.2:+1234596 MS.gene24179:CDS
CTGTCAGCTGGCATGAGATT+TGG 0.393698 1.2:+1234625 MS.gene24179:CDS
GCTGTTTACAATAGAAGAAT+CGG 0.393941 1.2:-1235799 None:intergenic
TCTTGCAAGGGAACTCTTGT+AGG 0.393966 1.2:-1235408 None:intergenic
GTGTTTCCGGTATCTGAGTT+TGG 0.395238 1.2:+1233198 MS.gene24179:CDS
TTGTAAATAAACAGGCTGAA+TGG 0.397672 1.2:+1234993 MS.gene24179:intron
GAGAGTGATGTTCTGCTTGT+TGG 0.399148 1.2:+1236567 MS.gene24179:CDS
CACACTTCTTGGTTCATTGA+AGG 0.399760 1.2:-1235897 None:intergenic
ACTGGAAAAGTTGCAGCCTT+TGG 0.399839 1.2:+1235536 MS.gene24179:CDS
TTCTGCAGAATAATAACTCT+TGG 0.402436 1.2:+1236249 MS.gene24179:CDS
GTGCTTGAAAGGTGAACTTT+CGG 0.411398 1.2:-1235459 None:intergenic
GTTAAAGAGATGAGTGAAGA+AGG 0.411917 1.2:+1236798 MS.gene24179:CDS
ATTGTTGAAAAGTGACCAAC+TGG 0.412014 1.2:+1235518 MS.gene24179:CDS
CATGGCTTCCTTAGAAGAAA+AGG 0.416918 1.2:+1232323 None:intergenic
TGTAAATAAACAGGCTGAAT+GGG 0.419597 1.2:+1234994 MS.gene24179:intron
TCAGTGATGTCGATCCTTTA+AGG 0.425306 1.2:+1234802 MS.gene24179:CDS
ATGTTACCTTTGTGTAGGTT+CGG 0.426676 1.2:-1236292 None:intergenic
GCTTGTTGGAGATGATCCTT+GGG 0.428210 1.2:+1236581 MS.gene24179:CDS
GATGTTTGAGACCGAGGAAT+CGG 0.432905 1.2:+1234651 MS.gene24179:CDS
GTCGATCCTTTAAGGTGGCC+TGG 0.437670 1.2:+1234810 MS.gene24179:CDS
GAACAACAAGTTCTTGAGTT+GGG 0.438497 1.2:-1233444 None:intergenic
CTTGTGTCATTGCCTCAAGT+GGG 0.444777 1.2:+1232590 MS.gene24179:CDS
AAGAAACTTACCCAAATATC+CGG 0.446011 1.2:-1235131 None:intergenic
CTAAAACGGCCGTTGCAATC+CGG 0.447348 1.2:+1235112 MS.gene24179:CDS
CTTTGACTTCAAGCCTAAAA+CGG 0.447527 1.2:+1235098 MS.gene24179:CDS
CTCATCTCTTTAACTTCTGA+AGG 0.449266 1.2:-1236789 None:intergenic
GATCTTGTGTAGGGAATTTG+TGG 0.451328 1.2:+1236737 MS.gene24179:intron
CGCAATTGCGAGTTGGTGTA+AGG 0.454613 1.2:+1234317 MS.gene24179:CDS
TTGTTGCAGCTTTCAAAAGA+AGG 0.463095 1.2:-1235618 None:intergenic
AGATATATGGGTACAATTGT+AGG 0.463723 1.2:+1234777 MS.gene24179:intron
CAACATTGAAAAGGTGAATA+CGG 0.469291 1.2:+1235638 MS.gene24179:CDS
AAAAGTGTTGGAGGAGTTGT+TGG 0.469435 1.2:+1232348 MS.gene24179:CDS
GAATTATGGCATGCTTGTGC+TGG 0.470225 1.2:+1232563 MS.gene24179:CDS
TCAAAGAAGGAAAGATGAAA+AGG 0.471141 1.2:-1235081 None:intergenic
TTTAGTCCAAACTCAGATAC+CGG 0.471165 1.2:-1233204 None:intergenic
TTTAGGCTTGAAGTCAAAGA+AGG 0.471500 1.2:-1235094 None:intergenic
CATTGACACAAATTTCACTT+TGG 0.474844 1.2:-1235974 None:intergenic
CCTGTTCACTATGTCCTTGA+GGG 0.475837 1.2:-1232631 None:intergenic
TATGGGACTCAGCTGTCAGC+TGG 0.478185 1.2:+1234613 MS.gene24179:CDS
GGATTATCTATTGCCTGTGT+GGG 0.483423 1.2:-1235438 None:intergenic
TCTTGTGTCATTGCCTCAAG+TGG 0.485817 1.2:+1232589 MS.gene24179:CDS
CCCTCAAGGACATAGTGAAC+AGG 0.486634 1.2:+1232631 MS.gene24179:CDS
TAATATTGTGAGTACCACTA+TGG 0.487510 1.2:+1236007 MS.gene24179:CDS
AAGAGACATCTTCTCACAAC+GGG 0.488034 1.2:+1233963 MS.gene24179:CDS
AGCTTACAGAATTCAGTGGT+TGG 0.493036 1.2:-1233066 None:intergenic
GAAGAAAAGGCTAAAAGTGT+TGG 0.493255 1.2:+1232336 MS.gene24179:CDS
ACCTTTGTGTAGGTTCGGAT+TGG 0.493613 1.2:-1236287 None:intergenic
GAAAAGGCTAAAAGTGTTGG+AGG 0.498865 1.2:+1232339 MS.gene24179:CDS
ATGTTTGAGACCGAGGAATC+GGG 0.501076 1.2:+1234652 MS.gene24179:CDS
AGAGTTGTCTCGCAGAGAAA+AGG 0.502279 1.2:-1236183 None:intergenic
CAGGCTGAATGGGATGAGCC+AGG 0.504340 1.2:+1235004 MS.gene24179:intron
ATCTTGTGTAGGGAATTTGT+GGG 0.505590 1.2:+1236738 MS.gene24179:intron
ACGGGTTGGAGTCTGTTTGT+CGG 0.506748 1.2:+1233981 MS.gene24179:CDS
GTGTGGTGATAAGCAAAATA+GGG 0.509449 1.2:+1235027 MS.gene24179:CDS
GGAAAAGCTATTTCCTCCAT+TGG 0.511058 1.2:+1233320 MS.gene24179:CDS
AACAACAAGTTCTTGAGTTG+GGG 0.511857 1.2:-1233443 None:intergenic
CTGTTTACAATAGAAGAATC+GGG 0.516285 1.2:-1235798 None:intergenic
CGGATTATCTATTGCCTGTG+TGG 0.517878 1.2:-1235439 None:intergenic
TGCCAATCATGCAATCTTGA+GGG 0.521840 1.2:-1236097 None:intergenic
TGTGTCATTGCCTCAAGTGG+GGG 0.524294 1.2:+1232592 MS.gene24179:CDS
TTAAAGAGATGAGTGAAGAA+GGG 0.524881 1.2:+1236799 MS.gene24179:CDS
AAAATGGTGCTTGAAGTAGA+AGG 0.525218 1.2:-1236035 None:intergenic
CGAACAACAAGTTCTTGAGT+TGG 0.526064 1.2:-1233445 None:intergenic
CCGAGGAATCGGGTAAGCGC+AGG 0.529760 1.2:+1234662 MS.gene24179:CDS
GAGATTTGCATGATAATACA+TGG 0.533645 1.2:+1233467 MS.gene24179:CDS
TGGTTCATTGAAGGTATCGA+TGG 0.533686 1.2:-1235888 None:intergenic
GTTGTGAGAAGATGTCTCTT+CGG 0.535802 1.2:-1233960 None:intergenic
AACTTAAGTTCTAGTCAAGA+TGG 0.540183 1.2:+1236119 MS.gene24179:CDS
CCATTGTTGTTGATCACCTG+TGG 0.540797 1.2:-1235351 None:intergenic
GAATGGGATGAGCCAGGGTG+TGG 0.543031 1.2:+1235010 MS.gene24179:CDS
ATAAAGGGTCTTCGTATCAA+AGG 0.543398 1.2:-1235240 None:intergenic
TTCGGTTCCACGCAGAGCTG+CGG 0.543545 1.2:+1233299 MS.gene24179:CDS
CCTGCGCTTACCCGATTCCT+CGG 0.545092 1.2:-1234662 None:intergenic
TTGTGTCATTGCCTCAAGTG+GGG 0.545165 1.2:+1232591 MS.gene24179:CDS
AAGCTGCAACAACATTGAAA+AGG 0.553431 1.2:+1235629 MS.gene24179:CDS
TGTGGGCTTCATATCTTGCA+AGG 0.556322 1.2:-1235421 None:intergenic
TGGTATGATGTTTGAGACCG+AGG 0.557923 1.2:+1234645 MS.gene24179:CDS
CTCAGCTAGACGTAGACGAA+TGG 0.558757 1.2:+1235829 MS.gene24179:CDS
GTATGCTTTCTGTGCTTGAA+AGG 0.560815 1.2:-1235470 None:intergenic
ACCTGTTCACTATGTCCTTG+AGG 0.562382 1.2:-1232632 None:intergenic
TTCAATGAACCAAGAAGTGT+GGG 0.563061 1.2:+1235899 MS.gene24179:CDS
TCAGCAGAAAGTACTGATGA+TGG 0.564399 1.2:-1234367 None:intergenic
AACAACTGAGATGGAAGACT+AGG 0.565825 1.2:-1232881 None:intergenic
TAGCAGAGGTAATCTGAGAC+TGG 0.565964 1.2:-1236142 None:intergenic
TGAGGCTGCTGCATAGTCCA+TGG 0.569758 1.2:-1235729 None:intergenic
GACATCTTCTCACAACGGGT+TGG 0.570794 1.2:+1233967 MS.gene24179:CDS
ATCGATGGATTCACTGCTTG+AGG 0.571921 1.2:-1235873 None:intergenic
AAATAATGTTACCTTTGTGT+AGG 0.573136 1.2:-1236297 None:intergenic
CCCAAATATCCGGATTGCAA+CGG 0.573209 1.2:-1235121 None:intergenic
TTGCCAATCATGCAATCTTG+AGG 0.575646 1.2:-1236098 None:intergenic
TACTCGCTCATACTAGTCCA+TGG 0.577099 1.2:+1235712 MS.gene24179:CDS
CTTGTCTATTACTTCCCTCA+AGG 0.578102 1.2:+1232617 MS.gene24179:CDS
GGATTGTAGAAAATCGTGAA+TGG 0.579311 1.2:-1234445 None:intergenic
AATTGAATGCATGTTTGGAC+TGG 0.580066 1.2:+1236488 MS.gene24179:CDS
TGTTGCAGCTTTCAAAAGAA+GGG 0.580770 1.2:-1235617 None:intergenic
CTAAACAGTGGAGCATTGCA+AGG 0.581354 1.2:+1236831 MS.gene24179:CDS
CTTCAATGAACCAAGAAGTG+TGG 0.584734 1.2:+1235898 MS.gene24179:CDS
ATGACACAAAAGGTTCTGGA+TGG 0.585015 1.2:+1236523 MS.gene24179:CDS
TAAGGTGGCCTGGTTCTAAG+TGG 0.586460 1.2:+1234820 MS.gene24179:CDS
ATATTTCGCCACTTAGAACC+AGG 0.586883 1.2:-1234828 None:intergenic
GGACTAGTATGAGCGAGTAA+TGG 0.586998 1.2:-1235708 None:intergenic
CTATATAGCCTTACCAATGG+AGG 0.589175 1.2:-1233333 None:intergenic
ACCTGAAAATGGAGGAACAA+TGG 0.589787 1.2:+1235269 MS.gene24179:CDS
GGGTAAGAAACTTACTCCCA+AGG 0.591071 1.2:-1236597 None:intergenic
ACTTGACACAACAACTGAGA+TGG 0.591159 1.2:-1232890 None:intergenic
GTGTCATTGCCTCAAGTGGG+GGG 0.591608 1.2:+1232593 MS.gene24179:CDS
AGTGTTGGAGGAGTTGTTGG+TGG 0.597797 1.2:+1232351 MS.gene24179:CDS
ATATAGCTTACAGAATTCAG+TGG 0.600450 1.2:-1233070 None:intergenic
CTGTGATGCAGAAAATGAGT+GGG 0.602871 1.2:+1235215 MS.gene24179:intron
AGGCTGAATGGGATGAGCCA+GGG 0.604797 1.2:+1235005 MS.gene24179:intron
ATTAAAGTACCTGAAAATGG+AGG 0.606817 1.2:+1235261 MS.gene24179:CDS
TTACAATAGAAGAATCGGGT+TGG 0.607155 1.2:-1235794 None:intergenic
GAGAAGTCGCAATTGCGAGT+TGG 0.609632 1.2:+1234310 MS.gene24179:CDS
TACTTTCATCAAAATCAACA+TGG 0.627269 1.2:-1236223 None:intergenic
GCAAGATATGAAGCCCACAC+AGG 0.629616 1.2:+1235425 MS.gene24179:CDS
TGGACCATGTCAATCAGTTG+AGG 0.629987 1.2:-1235774 None:intergenic
GGTCTGCTGAATGACACAAA+AGG 0.630277 1.2:+1236513 MS.gene24179:CDS
AAAGAAATGCAAGAACATTG+TGG 0.633626 1.2:+1232405 MS.gene24179:CDS
AGTGGAATAACAAAATCTGA+AGG 0.634060 1.2:-1234568 None:intergenic
GTGGGCTTCATATCTTGCAA+GGG 0.637703 1.2:-1235420 None:intergenic
CATTCGTCTACGTCTAGCTG+AGG 0.639369 1.2:-1235828 None:intergenic
ACAACTGAGATGGAAGACTA+GGG 0.639765 1.2:-1232880 None:intergenic
ACTTGAGGCAATGACACAAG+AGG 0.641095 1.2:-1232587 None:intergenic
TAATTCAAAATTAGAATCCG+AGG 0.641209 1.2:+1235569 MS.gene24179:CDS
CGACTCAGCTAGACTAGCAG+AGG 0.642522 1.2:-1236156 None:intergenic
CCACAGGTGATCAACAACAA+TGG 0.657687 1.2:+1235351 MS.gene24179:CDS
GACATTGATGATTCTAACTG+AGG 0.657820 1.2:-1235747 None:intergenic
GCTAGTGATACTAGCACACA+TGG 0.660819 1.2:+1233270 MS.gene24179:CDS
TCTCTGCGAGACAACTCTGG+TGG 0.660933 1.2:+1236188 MS.gene24179:CDS
AGTAGAAGGATCAACCATAG+TGG 0.662515 1.2:-1236021 None:intergenic
CTTGAGGCAATGACACAAGA+GGG 0.667127 1.2:-1232586 None:intergenic
GGGATGAAGCTTCTAAACAG+TGG 0.667863 1.2:+1236819 MS.gene24179:CDS
CAAACATGCATTCAATTGCG+CGG 0.668814 1.2:-1236482 None:intergenic
GAATGCATGTTTGGACTGGA+CGG 0.670392 1.2:+1236492 MS.gene24179:CDS
ACAACAAGTTCTTGAGTTGG+GGG 0.675973 1.2:-1233442 None:intergenic
ACATCCTCAACTGATTGACA+TGG 0.679013 1.2:+1235770 MS.gene24179:CDS
TCTTGTGTAGGGAATTTGTG+GGG 0.680812 1.2:+1236739 MS.gene24179:intron
GTGATGTCGATCCTTTAAGG+TGG 0.692501 1.2:+1234805 MS.gene24179:CDS
AGGGTAGTTTGGAATCTGTG+AGG 0.694049 1.2:-1232861 None:intergenic
TCTGCTGATAGCATGCACAT+TGG 0.695779 1.2:+1234382 MS.gene24179:CDS
GAAGAGACATCTTCTCACAA+CGG 0.703536 1.2:+1233962 MS.gene24179:CDS
GTGATAATATTCGTATACAG+CGG 0.703562 1.2:-1236767 None:intergenic
TCTGTGATGCAGAAAATGAG+TGG 0.714141 1.2:+1235214 MS.gene24179:intron
ACCAATCCGAACCTACACAA+AGG 0.719172 1.2:+1236286 MS.gene24179:CDS
CATATGATCAGATAACACCT+CGG 0.722778 1.2:-1235586 None:intergenic
ACATTTCGACATATCTACCG+AGG 0.754798 1.2:+1233490 MS.gene24179:CDS
TGTGATGCAGAAAATGAGTG+GGG 0.755513 1.2:+1235216 MS.gene24179:intron
AGTGATACTAGCACACATGG+TGG 0.770082 1.2:+1233273 MS.gene24179:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAGTTTTAATATCTAAAA+AGG - chr1.2:1236704-1236723 None:intergenic 10.0%
!!! AAAGTTTTAATATCTAAAAA+GGG - chr1.2:1236703-1236722 None:intergenic 10.0%
!! AAATTTCTTTGTAAATAAAC+AGG + chr1.2:1234985-1235004 MS.gene24179:intron 15.0%
!! TATCAAAACATACAATTTAA+GGG - chr1.2:1233001-1233020 None:intergenic 15.0%
!! TTATCAAAACATACAATTTA+AGG - chr1.2:1233002-1233021 None:intergenic 15.0%
!! TTTGATTATGATATGTTAAT+TGG - chr1.2:1235668-1235687 None:intergenic 15.0%
!!! AATATAATGGTTTTCAATAT+TGG + chr1.2:1234182-1234201 MS.gene24179:intron 15.0%
!!! ATATAATGGTTTTCAATATT+GGG + chr1.2:1234183-1234202 MS.gene24179:intron 15.0%
!!! ATTACTATTGTTATGTTTTA+TGG + chr1.2:1232457-1232476 MS.gene24179:intron 15.0%
!!! TAAGTTTAATAGTCTTATTT+TGG + chr1.2:1236651-1236670 MS.gene24179:intron 15.0%
!! AAAATATTATATGTCAAGTG+AGG - chr1.2:1234494-1234513 None:intergenic 20.0%
!! AAATACAGAAAATCTGTTTA+TGG + chr1.2:1234595-1234614 MS.gene24179:CDS 20.0%
!! AAATGTAGGAAAAAAATGTA+AGG - chr1.2:1233926-1233945 None:intergenic 20.0%
!! AAGTGAGGTATAAAATATTT+AGG - chr1.2:1234479-1234498 None:intergenic 20.0%
!! AATACAGAAAATCTGTTTAT+GGG + chr1.2:1234596-1234615 MS.gene24179:CDS 20.0%
!! AGACATTAAATTCAGAATTA+TGG + chr1.2:1232549-1232568 MS.gene24179:CDS 20.0%
!! AGTTATGTAAAGATGATTAT+TGG - chr1.2:1234254-1234273 None:intergenic 20.0%
!! ATCAAAACATACAATTTAAG+GGG - chr1.2:1233000-1233019 None:intergenic 20.0%
!! CAACTATATTACTAAGATTA+AGG - chr1.2:1234957-1234976 None:intergenic 20.0%
!! CTTAATCTTAGTAATATAGT+TGG + chr1.2:1234955-1234974 MS.gene24179:intron 20.0%
!! GTTATACTTATAAGTTTCTT+TGG + chr1.2:1232730-1232749 MS.gene24179:intron 20.0%
!! TAAATAGGAATGAATATTTG+TGG + chr1.2:1233732-1233751 MS.gene24179:intron 20.0%
!! TAGTAATTAAGAAAAAGAGA+AGG - chr1.2:1232444-1232463 None:intergenic 20.0%
!! TATACAAGATTGAAACAAAT+TGG - chr1.2:1236355-1236374 None:intergenic 20.0%
!! TTTCAAATTATTATCAATGC+CGG + chr1.2:1233638-1233657 MS.gene24179:intron 20.0%
!! TTTCAATATTGGGAAAATTA+TGG + chr1.2:1234193-1234212 MS.gene24179:intron 20.0%
!!! AAATTGTATGTTTTGATAAC+AGG + chr1.2:1233003-1233022 MS.gene24179:intron 20.0%
!!! AATATTTTTAGATCTAATCG+TGG + chr1.2:1234506-1234525 MS.gene24179:intron 20.0%
!!! AATTTTGAAGGTTAAGATAA+AGG - chr1.2:1233874-1233893 None:intergenic 20.0%
!!! AGTTGTACTAATTTTTGTTT+AGG + chr1.2:1232518-1232537 MS.gene24179:intron 20.0%
!!! ATAAACAGATTTTCTGTATT+TGG - chr1.2:1234596-1234615 None:intergenic 20.0%
!!! ATGTAAAGAATTTTAACTTG+AGG + chr1.2:1235928-1235947 MS.gene24179:CDS 20.0%
!!! ATTGGTTTGGTAAAATAAAT+AGG + chr1.2:1233717-1233736 MS.gene24179:intron 20.0%
!!! ATTTTCAGGTACTTTAATAA+AGG - chr1.2:1235259-1235278 None:intergenic 20.0%
!!! ATTTTCCATTAATTTGTGTT+AGG + chr1.2:1233167-1233186 MS.gene24179:intron 20.0%
!!! GCATTGATAATAATTTGAAA+AGG - chr1.2:1233638-1233657 None:intergenic 20.0%
!!! GGATTCTAATTTTGAATTAT+CGG - chr1.2:1235568-1235587 None:intergenic 20.0%
!!! GTTGTACTAATTTTTGTTTA+GGG + chr1.2:1232519-1232538 MS.gene24179:intron 20.0%
!!! TAATTTTGAATTATCGGTTT+TGG - chr1.2:1235562-1235581 None:intergenic 20.0%
!!! TCTTTTATGACTAATTTTGA+AGG - chr1.2:1233886-1233905 None:intergenic 20.0%
!!! TGCATATTTAAGGTATTATT+AGG - chr1.2:1235495-1235514 None:intergenic 20.0%
!!! TGTAAAGAATTTTAACTTGA+GGG + chr1.2:1235929-1235948 MS.gene24179:CDS 20.0%
!!! TTGTACTAATTTTTGTTTAG+GGG + chr1.2:1232520-1232539 MS.gene24179:intron 20.0%
!!! TTTATTAAAGTACCTGAAAA+TGG + chr1.2:1235258-1235277 MS.gene24179:CDS 20.0%
!!! TTTTCAGGTACTTTAATAAA+GGG - chr1.2:1235258-1235277 None:intergenic 20.0%
!!! TTTTTCCTAACACAAATTAA+TGG - chr1.2:1233175-1233194 None:intergenic 20.0%
! AAAACACACTAATCAAATGA+GGG - chr1.2:1233399-1233418 None:intergenic 25.0%
! AAATAATGTTACCTTTGTGT+AGG - chr1.2:1236300-1236319 None:intergenic 25.0%
! CAACAATGAATGCATATTTA+AGG - chr1.2:1235505-1235524 None:intergenic 25.0%
! CTATAAAACATACTCTATGT+TGG + chr1.2:1234930-1234949 MS.gene24179:intron 25.0%
! TAATGGTAGATCTTAATAAC+CGG - chr1.2:1234879-1234898 None:intergenic 25.0%
! TAATTCAAAATTAGAATCCG+AGG + chr1.2:1235569-1235588 MS.gene24179:CDS 25.0%
! TACTTTCATCAAAATCAACA+TGG - chr1.2:1236226-1236245 None:intergenic 25.0%
! TTCAATCTTGTATATCATGA+TGG + chr1.2:1236361-1236380 MS.gene24179:intron 25.0%
! TTCTTATTCTGCAGATATAT+GGG + chr1.2:1234765-1234784 MS.gene24179:intron 25.0%
! TTTCCTTTATCTTATTGCTT+GGG + chr1.2:1233837-1233856 MS.gene24179:intron 25.0%
! TTTGTACATCTGAATGTTAT+TGG + chr1.2:1233122-1233141 MS.gene24179:intron 25.0%
!! TTGATCACTAGTAGTAATTT+TGG + chr1.2:1235190-1235209 MS.gene24179:intron 25.0%
!! TTTTCCTACATTTTTCATGT+AGG + chr1.2:1233933-1233952 MS.gene24179:intron 25.0%
!!! AAGTACAAGACATTTTGATA+AGG - chr1.2:1235172-1235191 None:intergenic 25.0%
!!! AGATTCTAGTTTCTATTGAA+TGG + chr1.2:1232766-1232785 MS.gene24179:intron 25.0%
!!! TTATGGTTTCTTAGTTTTCT+TGG + chr1.2:1232474-1232493 MS.gene24179:intron 25.0%
AAAACAGTTCAGAAGAATTC+AGG - chr1.2:1234694-1234713 None:intergenic 30.0%
AAACCCAAGCAATAAGATAA+AGG - chr1.2:1233843-1233862 None:intergenic 30.0%
AAAGAAATGCAAGAACATTG+TGG + chr1.2:1232405-1232424 MS.gene24179:CDS 30.0%
AAGAAACTTACCCAAATATC+CGG - chr1.2:1235134-1235153 None:intergenic 30.0%
AATGGTAGATCTTAATAACC+GGG - chr1.2:1234878-1234897 None:intergenic 30.0%
AGATATATGGGTACAATTGT+AGG + chr1.2:1234777-1234796 MS.gene24179:intron 30.0%
AGTGGAATAACAAAATCTGA+AGG - chr1.2:1234571-1234590 None:intergenic 30.0%
ATATAGCTTACAGAATTCAG+TGG - chr1.2:1233073-1233092 None:intergenic 30.0%
ATCAAACATTACACGAAAGA+AGG - chr1.2:1236621-1236640 None:intergenic 30.0%
ATTGAATGTAACACATGTGT+CGG - chr1.2:1233606-1233625 None:intergenic 30.0%
CAAAACACACTAATCAAATG+AGG - chr1.2:1233400-1233419 None:intergenic 30.0%
CAACATTGAAAAGGTGAATA+CGG + chr1.2:1235638-1235657 MS.gene24179:CDS 30.0%
CATTGACACAAATTTCACTT+TGG - chr1.2:1235977-1235996 None:intergenic 30.0%
CTCTGTTGTTATCTGAATAT+AGG + chr1.2:1234097-1234116 MS.gene24179:intron 30.0%
CTGTTTACAATAGAAGAATC+GGG - chr1.2:1235801-1235820 None:intergenic 30.0%
CTTCTTATTCTGCAGATATA+TGG + chr1.2:1234764-1234783 MS.gene24179:intron 30.0%
GAGATTTGCATGATAATACA+TGG + chr1.2:1233467-1233486 MS.gene24179:CDS 30.0%
GATGAAACCATACAATTAGT+CGG - chr1.2:1234902-1234921 None:intergenic 30.0%
GCTGTTTACAATAGAAGAAT+CGG - chr1.2:1235802-1235821 None:intergenic 30.0%
GTCGATACATTGCAATATAA+TGG + chr1.2:1234169-1234188 MS.gene24179:intron 30.0%
GTGATAATATTCGTATACAG+CGG - chr1.2:1236770-1236789 None:intergenic 30.0%
GTTTCCTTTATCTTATTGCT+TGG + chr1.2:1233836-1233855 MS.gene24179:intron 30.0%
TAAAATATTTAGGCACACCT+TGG - chr1.2:1234469-1234488 None:intergenic 30.0%
TAATATTGTGAGTACCACTA+TGG + chr1.2:1236007-1236026 MS.gene24179:CDS 30.0%
TCAAACATTACACGAAAGAA+GGG - chr1.2:1236620-1236639 None:intergenic 30.0%
TCAAAGAAGGAAAGATGAAA+AGG - chr1.2:1235084-1235103 None:intergenic 30.0%
TCTTGAGTGTATTATTTGCA+GGG + chr1.2:1234540-1234559 MS.gene24179:intron 30.0%
TGTAAATAAACAGGCTGAAT+GGG + chr1.2:1234994-1235013 MS.gene24179:intron 30.0%
TTAAAGAGATGAGTGAAGAA+GGG + chr1.2:1236799-1236818 MS.gene24179:CDS 30.0%
TTCTGCAGAATAATAACTCT+TGG + chr1.2:1236249-1236268 MS.gene24179:CDS 30.0%
TTCTTGAGTGTATTATTTGC+AGG + chr1.2:1234539-1234558 MS.gene24179:intron 30.0%
TTGTAAATAAACAGGCTGAA+TGG + chr1.2:1234993-1235012 MS.gene24179:intron 30.0%
TTGTTGCATGATAGGTAAAA+AGG - chr1.2:1235379-1235398 None:intergenic 30.0%
TTTACCAAACCAATAGACAA+GGG - chr1.2:1233711-1233730 None:intergenic 30.0%
! AACTTAAGTTCTAGTCAAGA+TGG + chr1.2:1236119-1236138 MS.gene24179:CDS 30.0%
! ACACCATTAATCTAAAGTGT+AGG - chr1.2:1233551-1233570 None:intergenic 30.0%
! ACATCTTCATCATGTTTTCT+TGG - chr1.2:1235323-1235342 None:intergenic 30.0%
! ATGTTTTCTTGGTAGAGATT+TGG - chr1.2:1235312-1235331 None:intergenic 30.0%
! ATTAAAGTACCTGAAAATGG+AGG + chr1.2:1235261-1235280 MS.gene24179:CDS 30.0%
! CTCATTTGATTAGTGTGTTT+TGG + chr1.2:1233398-1233417 MS.gene24179:intron 30.0%
! GAAGATGTTTTATAAACCAC+AGG + chr1.2:1235335-1235354 MS.gene24179:CDS 30.0%
! GTTTGTGTTTTGTCCTTTTA+AGG + chr1.2:1232811-1232830 MS.gene24179:intron 30.0%
! GTTTTTCTGCAAAACTTTGA+CGG + chr1.2:1233248-1233267 MS.gene24179:CDS 30.0%
! TTTTACCAAACCAATAGACA+AGG - chr1.2:1233712-1233731 None:intergenic 30.0%
!! ACAAGACATTTTGATAAGGT+GGG - chr1.2:1235168-1235187 None:intergenic 30.0%
!! ACTTTTAGCCTTTTCTTCTA+AGG - chr1.2:1232334-1232353 None:intergenic 30.0%
!! TACAAGACATTTTGATAAGG+TGG - chr1.2:1235169-1235188 None:intergenic 30.0%
!! TTAGGAAAAAGAAGTGTTTC+CGG + chr1.2:1233185-1233204 MS.gene24179:intron 30.0%
!!! ATGGATTTTGACTTTGGTTT+TGG - chr1.2:1235692-1235711 None:intergenic 30.0%
!!! GATTAGTGTGTTTTGGTTTT+AGG + chr1.2:1233405-1233424 MS.gene24179:intron 30.0%
!!! TTCAGATTTTGTTATTCCAC+TGG + chr1.2:1234570-1234589 MS.gene24179:CDS 30.0%
AAAATGGTGCTTGAAGTAGA+AGG - chr1.2:1236038-1236057 None:intergenic 35.0%
AAGCTGCAACAACATTGAAA+AGG + chr1.2:1235629-1235648 MS.gene24179:CDS 35.0%
AATTGAATGCATGTTTGGAC+TGG + chr1.2:1236488-1236507 MS.gene24179:CDS 35.0%
ACAATGTTGTGATCTTGTGT+AGG + chr1.2:1236727-1236746 MS.gene24179:intron 35.0%
ACCATACAATTAGTCGGTAA+TGG - chr1.2:1234896-1234915 None:intergenic 35.0%
ATAAAGGGTCTTCGTATCAA+AGG - chr1.2:1235243-1235262 None:intergenic 35.0%
ATCTTGTGTAGGGAATTTGT+GGG + chr1.2:1236738-1236757 MS.gene24179:intron 35.0%
ATGGTAGATCTTAATAACCG+GGG - chr1.2:1234877-1234896 None:intergenic 35.0%
ATGTTACCTTTGTGTAGGTT+CGG - chr1.2:1236295-1236314 None:intergenic 35.0%
ATTGTTGAAAAGTGACCAAC+TGG + chr1.2:1235518-1235537 MS.gene24179:CDS 35.0%
CAATGTTGTGATCTTGTGTA+GGG + chr1.2:1236728-1236747 MS.gene24179:intron 35.0%
CATAATTATCCCACACTTCT+TGG - chr1.2:1235911-1235930 None:intergenic 35.0%
CATATGATCAGATAACACCT+CGG - chr1.2:1235589-1235608 None:intergenic 35.0%
CTGACCTACATGAAAAATGT+AGG - chr1.2:1233940-1233959 None:intergenic 35.0%
CTTTAGATTAATGGTGTGTC+CGG + chr1.2:1233554-1233573 MS.gene24179:intron 35.0%
GAACAACAAGTTCTTGAGTT+GGG - chr1.2:1233447-1233466 None:intergenic 35.0%
GATGGTATTTATTGTGTCTG+TGG + chr1.2:1236379-1236398 MS.gene24179:intron 35.0%
GCACCTACACTTTAGATTAA+TGG + chr1.2:1233545-1233564 MS.gene24179:intron 35.0%
GCATAATCTTGTTGCATGAT+AGG - chr1.2:1235387-1235406 None:intergenic 35.0%
GCTGCAAGTTATTATTGCTT+GGG + chr1.2:1233806-1233825 MS.gene24179:intron 35.0%
GGAATGAATATTTGTGGTTG+TGG + chr1.2:1233738-1233757 MS.gene24179:intron 35.0%
GGATTGTAGAAAATCGTGAA+TGG - chr1.2:1234448-1234467 None:intergenic 35.0%
GTGTGGTGATAAGCAAAATA+GGG + chr1.2:1235027-1235046 MS.gene24179:CDS 35.0%
GTTAAAGAGATGAGTGAAGA+AGG + chr1.2:1236798-1236817 MS.gene24179:CDS 35.0%
TAAGGCTATATAGCACTAGT+TGG + chr1.2:1233343-1233362 MS.gene24179:intron 35.0%
TAGACAAGGGTAGAAAACTA+TGG - chr1.2:1233698-1233717 None:intergenic 35.0%
TATTCAGGTAGGATAAGTTC+TGG + chr1.2:1234848-1234867 MS.gene24179:intron 35.0%
TCTTGTACAGCCATAAAAGA+GGG - chr1.2:1233375-1233394 None:intergenic 35.0%
TGAAATGCAACAGCAAAAAG+TGG - chr1.2:1232960-1232979 None:intergenic 35.0%
TGCATCATTATCATTCCTCT+TGG + chr1.2:1233784-1233803 MS.gene24179:intron 35.0%
TGTATGATACGTGTCAGAAT+CGG + chr1.2:1233577-1233596 MS.gene24179:intron 35.0%
TGTTGCAGCTTTCAAAAGAA+GGG - chr1.2:1235620-1235639 None:intergenic 35.0%
TTACAATAGAAGAATCGGGT+TGG - chr1.2:1235797-1235816 None:intergenic 35.0%
TTCTAAGTGGCGAAATATTC+AGG + chr1.2:1234833-1234852 MS.gene24179:CDS 35.0%
TTCTTGTACAGCCATAAAAG+AGG - chr1.2:1233376-1233395 None:intergenic 35.0%
TTGAATGGTTGAAACATGTG+TGG + chr1.2:1232781-1232800 MS.gene24179:intron 35.0%
TTGTTGCAGCTTTCAAAAGA+AGG - chr1.2:1235621-1235640 None:intergenic 35.0%
TTTAGGCTTGAAGTCAAAGA+AGG - chr1.2:1235097-1235116 None:intergenic 35.0%
TTTAGTCCAAACTCAGATAC+CGG - chr1.2:1233207-1233226 None:intergenic 35.0%
! AACAACAAGTTCTTGAGTTG+GGG - chr1.2:1233446-1233465 None:intergenic 35.0%
! AATAATAACTTGCAGCCAAG+AGG - chr1.2:1233802-1233821 None:intergenic 35.0%
! ACCATTACCGACTAATTGTA+TGG + chr1.2:1234892-1234911 MS.gene24179:intron 35.0%
! AGCAAAATAGGGTTAGTGTT+TGG + chr1.2:1235038-1235057 MS.gene24179:CDS 35.0%
! AGTTTTCTACCCTTGTCTAT+TGG + chr1.2:1233699-1233718 MS.gene24179:intron 35.0%
! CTCATCTCTTTAACTTCTGA+AGG - chr1.2:1236792-1236811 None:intergenic 35.0%
! CTTTGACTTCAAGCCTAAAA+CGG + chr1.2:1235098-1235117 MS.gene24179:CDS 35.0%
! GAAGAAAAGGCTAAAAGTGT+TGG + chr1.2:1232336-1232355 MS.gene24179:CDS 35.0%
! GACATTGATGATTCTAACTG+AGG - chr1.2:1235750-1235769 None:intergenic 35.0%
! GCAAAATAGGGTTAGTGTTT+GGG + chr1.2:1235039-1235058 MS.gene24179:CDS 35.0%
! GCGATTCTGTTCTTTTTATC+AGG + chr1.2:1234024-1234043 MS.gene24179:CDS 35.0%
! GTGATGTGTCATTGTTACAA+GGG + chr1.2:1234285-1234304 MS.gene24179:intron 35.0%
! GTTTTGCAGAAAAACTCAGT+TGG - chr1.2:1233243-1233262 None:intergenic 35.0%
! TAATCTAAAGTGTAGGTGCT+AGG - chr1.2:1233544-1233563 None:intergenic 35.0%
! TCACGATTTTCTACAATCCA+AGG + chr1.2:1234449-1234468 MS.gene24179:CDS 35.0%
! TGTGATGTGTCATTGTTACA+AGG + chr1.2:1234284-1234303 MS.gene24179:intron 35.0%
! TTCAATGAACCAAGAAGTGT+GGG + chr1.2:1235899-1235918 MS.gene24179:CDS 35.0%
!!! CGAGTAATGGATTTTGACTT+TGG - chr1.2:1235698-1235717 None:intergenic 35.0%
AACAACTGAGATGGAAGACT+AGG - chr1.2:1232884-1232903 None:intergenic 40.0%
AAGAGACATCTTCTCACAAC+GGG + chr1.2:1233963-1233982 MS.gene24179:CDS 40.0%
AAGTGGCGAAATATTCAGGT+AGG + chr1.2:1234837-1234856 MS.gene24179:intron 40.0%
ACAACTGAGATGGAAGACTA+GGG - chr1.2:1232883-1232902 None:intergenic 40.0%
ACATCCTCAACTGATTGACA+TGG + chr1.2:1235770-1235789 MS.gene24179:CDS 40.0%
ACATTTCGACATATCTACCG+AGG + chr1.2:1233490-1233509 MS.gene24179:CDS 40.0%
ACCTGAAAATGGAGGAACAA+TGG + chr1.2:1235269-1235288 MS.gene24179:CDS 40.0%
ACTTGACACAACAACTGAGA+TGG - chr1.2:1232893-1232912 None:intergenic 40.0%
AGCTTACAGAATTCAGTGGT+TGG - chr1.2:1233069-1233088 None:intergenic 40.0%
AGTAGAAGGATCAACCATAG+TGG - chr1.2:1236024-1236043 None:intergenic 40.0%
ATATTTCGCCACTTAGAACC+AGG - chr1.2:1234831-1234850 None:intergenic 40.0%
CAAACATGCATTCAATTGCG+CGG - chr1.2:1236485-1236504 None:intergenic 40.0%
CACACTTCTTGGTTCATTGA+AGG - chr1.2:1235900-1235919 None:intergenic 40.0%
CGAACAACAAGTTCTTGAGT+TGG - chr1.2:1233448-1233467 None:intergenic 40.0%
CTGAATGACACAAAAGGTTC+TGG + chr1.2:1236519-1236538 MS.gene24179:CDS 40.0%
CTGTGATGCAGAAAATGAGT+GGG + chr1.2:1235215-1235234 MS.gene24179:intron 40.0%
CTTCAATGAACCAAGAAGTG+TGG + chr1.2:1235898-1235917 MS.gene24179:CDS 40.0%
CTTGTCTATTACTTCCCTCA+AGG + chr1.2:1232617-1232636 MS.gene24179:CDS 40.0%
GAAGAGACATCTTCTCACAA+CGG + chr1.2:1233962-1233981 MS.gene24179:CDS 40.0%
GATCTTGTGTAGGGAATTTG+TGG + chr1.2:1236737-1236756 MS.gene24179:intron 40.0%
GGAAAGATGAAAAGGCTTTC+TGG - chr1.2:1235076-1235095 None:intergenic 40.0%
GGATTATCTATTGCCTGTGT+GGG - chr1.2:1235441-1235460 None:intergenic 40.0%
GGCTGCAAGTTATTATTGCT+TGG + chr1.2:1233805-1233824 MS.gene24179:intron 40.0%
GGTGTGGTGATAAGCAAAAT+AGG + chr1.2:1235026-1235045 MS.gene24179:CDS 40.0%
GTAGAAGCTGCAACCTTAAA+AGG - chr1.2:1232827-1232846 None:intergenic 40.0%
GTATGCTTTCTGTGCTTGAA+AGG - chr1.2:1235473-1235492 None:intergenic 40.0%
GTGCTTGAAAGGTGAACTTT+CGG - chr1.2:1235462-1235481 None:intergenic 40.0%
GTTGTGAGAAGATGTCTCTT+CGG - chr1.2:1233963-1233982 None:intergenic 40.0%
TCAGTGATGTCGATCCTTTA+AGG + chr1.2:1234802-1234821 MS.gene24179:CDS 40.0%
TCTGTGATGCAGAAAATGAG+TGG + chr1.2:1235214-1235233 MS.gene24179:intron 40.0%
TCTTGTGTAGGGAATTTGTG+GGG + chr1.2:1236739-1236758 MS.gene24179:intron 40.0%
TGAGCAAAAGTCGTCGAAAA+TGG - chr1.2:1236054-1236073 None:intergenic 40.0%
TGCCAATCATGCAATCTTGA+GGG - chr1.2:1236100-1236119 None:intergenic 40.0%
TGTAAGGATCTAACTCGATC+AGG - chr1.2:1233910-1233929 None:intergenic 40.0%
TGTGATGCAGAAAATGAGTG+GGG + chr1.2:1235216-1235235 MS.gene24179:intron 40.0%
TTCTGACACGTATCATACAC+CGG - chr1.2:1233576-1233595 None:intergenic 40.0%
TTGCCAATCATGCAATCTTG+AGG - chr1.2:1236101-1236120 None:intergenic 40.0%
! AGCTATTTCCTCCATTGGTA+AGG + chr1.2:1233325-1233344 MS.gene24179:intron 40.0%
! CTATATAGCCTTACCAATGG+AGG - chr1.2:1233336-1233355 None:intergenic 40.0%
! GATTTTCTGTATTTGGCCAG+TGG - chr1.2:1234589-1234608 None:intergenic 40.0%
! GGAAAAGCTATTTCCTCCAT+TGG + chr1.2:1233320-1233339 MS.gene24179:CDS 40.0%
! GTGCTATATAGCCTTACCAA+TGG - chr1.2:1233339-1233358 None:intergenic 40.0%
! TCCATTGTTCCTCCATTTTC+AGG - chr1.2:1235273-1235292 None:intergenic 40.0%
! TCTACCCTTGTCTATTGGTT+TGG + chr1.2:1233704-1233723 MS.gene24179:intron 40.0%
!! AAAAGTGTTGGAGGAGTTGT+TGG + chr1.2:1232348-1232367 MS.gene24179:CDS 40.0%
!! ACAACAAGTTCTTGAGTTGG+GGG - chr1.2:1233445-1233464 None:intergenic 40.0%
!! ATGACACAAAAGGTTCTGGA+TGG + chr1.2:1236523-1236542 MS.gene24179:CDS 40.0%
!! GAAAAGGCTAAAAGTGTTGG+AGG + chr1.2:1232339-1232358 MS.gene24179:CDS 40.0%
!! GTTTTGATAACAGGCTGACA+AGG + chr1.2:1233012-1233031 MS.gene24179:intron 40.0%
!! TCAGCAGAAAGTACTGATGA+TGG - chr1.2:1234370-1234389 None:intergenic 40.0%
!! TGGTTCATTGAAGGTATCGA+TGG - chr1.2:1235891-1235910 None:intergenic 40.0%
!!! GAATTATCGGTTTTGGCCAA+AGG - chr1.2:1235555-1235574 None:intergenic 40.0%
ACCAATCCGAACCTACACAA+AGG + chr1.2:1236286-1236305 MS.gene24179:CDS 45.0%
ACCTGTTCACTATGTCCTTG+AGG - chr1.2:1232635-1232654 None:intergenic 45.0%
ACCTTTGTGTAGGTTCGGAT+TGG - chr1.2:1236290-1236309 None:intergenic 45.0%
ACGAACACCACACATGAAAC+CGG - chr1.2:1233660-1233679 None:intergenic 45.0%
ACTGGAAAAGTTGCAGCCTT+TGG + chr1.2:1235536-1235555 MS.gene24179:CDS 45.0%
ACTTGAGGCAATGACACAAG+AGG - chr1.2:1232590-1232609 None:intergenic 45.0%
AGAGTTGTCTCGCAGAGAAA+AGG - chr1.2:1236186-1236205 None:intergenic 45.0%
AGTGATACTAGCACACATGG+TGG + chr1.2:1233273-1233292 MS.gene24179:CDS 45.0%
CACCCTCAAGATTGCATGAT+TGG + chr1.2:1236095-1236114 MS.gene24179:CDS 45.0%
CCACAGGTGATCAACAACAA+TGG + chr1.2:1235351-1235370 MS.gene24179:CDS 45.0%
CCCAAATATCCGGATTGCAA+CGG - chr1.2:1235124-1235143 None:intergenic 45.0%
CCGTTGCAATCCGGATATTT+GGG + chr1.2:1235121-1235140 MS.gene24179:CDS 45.0%
CCTGTTCACTATGTCCTTGA+GGG - chr1.2:1232634-1232653 None:intergenic 45.0%
CGCGCAATTGAATGCATGTT+TGG + chr1.2:1236483-1236502 MS.gene24179:CDS 45.0%
CGGATTATCTATTGCCTGTG+TGG - chr1.2:1235442-1235461 None:intergenic 45.0%
CTTGAGGCAATGACACAAGA+GGG - chr1.2:1232589-1232608 None:intergenic 45.0%
GAATTATGGCATGCTTGTGC+TGG + chr1.2:1232563-1232582 MS.gene24179:CDS 45.0%
GAGAGTGATGTTCTGCTTGT+TGG + chr1.2:1236567-1236586 MS.gene24179:CDS 45.0%
GATGGAAGACTAGGGTAGTT+TGG - chr1.2:1232875-1232894 None:intergenic 45.0%
GCTAGTGATACTAGCACACA+TGG + chr1.2:1233270-1233289 MS.gene24179:CDS 45.0%
GGCTCAAAAAGGCTTAAAGC+AGG + chr1.2:1234002-1234021 MS.gene24179:CDS 45.0%
GGGATGAAGCTTCTAAACAG+TGG + chr1.2:1236819-1236838 MS.gene24179:CDS 45.0%
GGGTAAGAAACTTACTCCCA+AGG - chr1.2:1236600-1236619 None:intergenic 45.0%
GGTCTGCTGAATGACACAAA+AGG + chr1.2:1236513-1236532 MS.gene24179:CDS 45.0%
GTGCAAAAAGCAGGTTCTGT+AGG + chr1.2:1236414-1236433 MS.gene24179:CDS 45.0%
GTGGGCTTCATATCTTGCAA+GGG - chr1.2:1235423-1235442 None:intergenic 45.0%
GTGTTTCCGGTATCTGAGTT+TGG + chr1.2:1233198-1233217 MS.gene24179:CDS 45.0%
TACTCGCTCATACTAGTCCA+TGG + chr1.2:1235712-1235731 MS.gene24179:CDS 45.0%
TCTGCTGATAGCATGCACAT+TGG + chr1.2:1234382-1234401 MS.gene24179:CDS 45.0%
TCTTGCAAGGGAACTCTTGT+AGG - chr1.2:1235411-1235430 None:intergenic 45.0%
TGCAGAAAAGATCCTCACCT+CGG - chr1.2:1233510-1233529 None:intergenic 45.0%
TGGACCATGTCAATCAGTTG+AGG - chr1.2:1235777-1235796 None:intergenic 45.0%
TGTGGGCTTCATATCTTGCA+AGG - chr1.2:1235424-1235443 None:intergenic 45.0%
TTAGAACCAGGCCACCTTAA+AGG - chr1.2:1234819-1234838 None:intergenic 45.0%
! AAGGCTGCAACTTTTCCAGT+TGG - chr1.2:1235536-1235555 None:intergenic 45.0%
! AGGATAAGTTCTGGTAACCC+CGG + chr1.2:1234857-1234876 MS.gene24179:intron 45.0%
! AGGGTAGTTTGGAATCTGTG+AGG - chr1.2:1232864-1232883 None:intergenic 45.0%
! ATCGATGGATTCACTGCTTG+AGG - chr1.2:1235876-1235895 None:intergenic 45.0%
! ATGTTTGAGACCGAGGAATC+GGG + chr1.2:1234652-1234671 MS.gene24179:CDS 45.0%
! CCATTGTTGTTGATCACCTG+TGG - chr1.2:1235354-1235373 None:intergenic 45.0%
! CGACGACTTTTGCTCAATGA+AGG + chr1.2:1236058-1236077 MS.gene24179:CDS 45.0%
! CTTGTGTCATTGCCTCAAGT+GGG + chr1.2:1232590-1232609 MS.gene24179:CDS 45.0%
! GAATGCATGTTTGGACTGGA+CGG + chr1.2:1236492-1236511 MS.gene24179:CDS 45.0%
! GATGTTTGAGACCGAGGAAT+CGG + chr1.2:1234651-1234670 MS.gene24179:CDS 45.0%
! GCTTGTTGGAGATGATCCTT+GGG + chr1.2:1236581-1236600 MS.gene24179:CDS 45.0%
! GGACTAGTATGAGCGAGTAA+TGG - chr1.2:1235711-1235730 None:intergenic 45.0%
! GTGATGTCGATCCTTTAAGG+TGG + chr1.2:1234805-1234824 MS.gene24179:CDS 45.0%
! TAGCACACATGGTGGCTTTT+CGG + chr1.2:1233281-1233300 MS.gene24179:CDS 45.0%
! TAGCAGAGGTAATCTGAGAC+TGG - chr1.2:1236145-1236164 None:intergenic 45.0%
! TCTTGTGTCATTGCCTCAAG+TGG + chr1.2:1232589-1232608 MS.gene24179:CDS 45.0%
! TGCTTGTTGGAGATGATCCT+TGG + chr1.2:1236580-1236599 MS.gene24179:CDS 45.0%
! TGGTATGATGTTTGAGACCG+AGG + chr1.2:1234645-1234664 MS.gene24179:CDS 45.0%
! TTGGTTGCGTCCCTCTTTTA+TGG + chr1.2:1233362-1233381 MS.gene24179:intron 45.0%
! TTGTGTCATTGCCTCAAGTG+GGG + chr1.2:1232591-1232610 MS.gene24179:CDS 45.0%
! TTTTCTCTGCGAGACAACTC+TGG + chr1.2:1236185-1236204 MS.gene24179:CDS 45.0%
! TTTTGCTTATCACCACACCC+TGG - chr1.2:1235025-1235044 None:intergenic 45.0%
!! ATCAATGCCGGTTTCATGTG+TGG + chr1.2:1233650-1233669 MS.gene24179:intron 45.0%
!! CTAAACAGTGGAGCATTGCA+AGG + chr1.2:1236831-1236850 MS.gene24179:CDS 45.0%
!! GTCTGTTTGTCGGCTCAAAA+AGG + chr1.2:1233991-1234010 MS.gene24179:CDS 45.0%
CATTCGTCTACGTCTAGCTG+AGG - chr1.2:1235831-1235850 None:intergenic 50.0%
CCCTCAAGGACATAGTGAAC+AGG + chr1.2:1232631-1232650 MS.gene24179:CDS 50.0%
CTAAAACGGCCGTTGCAATC+CGG + chr1.2:1235112-1235131 MS.gene24179:CDS 50.0%
CTCAGCTAGACGTAGACGAA+TGG + chr1.2:1235829-1235848 MS.gene24179:CDS 50.0%
CTGTCAGCTGGCATGAGATT+TGG + chr1.2:1234625-1234644 MS.gene24179:CDS 50.0%
GACATCTTCTCACAACGGGT+TGG + chr1.2:1233967-1233986 MS.gene24179:CDS 50.0%
GAGAAGTCGCAATTGCGAGT+TGG + chr1.2:1234310-1234329 MS.gene24179:CDS 50.0%
GCAAGATATGAAGCCCACAC+AGG + chr1.2:1235425-1235444 MS.gene24179:CDS 50.0%
GCCGTTGCAATCCGGATATT+TGG + chr1.2:1235120-1235139 MS.gene24179:CDS 50.0%
GTGTGACAGGTGCAAAAAGC+AGG + chr1.2:1236405-1236424 MS.gene24179:intron 50.0%
TCGACATATCTACCGAGGTG+AGG + chr1.2:1233495-1233514 MS.gene24179:intron 50.0%
! AGTGTTGGAGGAGTTGTTGG+TGG + chr1.2:1232351-1232370 MS.gene24179:CDS 50.0%
! TGTGTCATTGCCTCAAGTGG+GGG + chr1.2:1232592-1232611 MS.gene24179:CDS 50.0%
!! ACGGGTTGGAGTCTGTTTGT+CGG + chr1.2:1233981-1234000 MS.gene24179:CDS 50.0%
!! CGCAATTGCGAGTTGGTGTA+AGG + chr1.2:1234317-1234336 MS.gene24179:CDS 50.0%
!! TAAGGTGGCCTGGTTCTAAG+TGG + chr1.2:1234820-1234839 MS.gene24179:CDS 50.0%
AGGCTGAATGGGATGAGCCA+GGG + chr1.2:1235005-1235024 MS.gene24179:intron 55.0%
CGACTCAGCTAGACTAGCAG+AGG - chr1.2:1236159-1236178 None:intergenic 55.0%
GTGTCTGTGGTGTGTGTGAC+AGG + chr1.2:1236392-1236411 MS.gene24179:intron 55.0%
TAGACAAGACCCCCCACTTG+AGG - chr1.2:1232605-1232624 None:intergenic 55.0%
TATGGGACTCAGCTGTCAGC+TGG + chr1.2:1234613-1234632 MS.gene24179:CDS 55.0%
TCTCTGCGAGACAACTCTGG+TGG + chr1.2:1236188-1236207 MS.gene24179:CDS 55.0%
TGAGGCTGCTGCATAGTCCA+TGG - chr1.2:1235732-1235751 None:intergenic 55.0%
! GTGTCATTGCCTCAAGTGGG+GGG + chr1.2:1232593-1232612 MS.gene24179:CDS 55.0%
!! CGGATTGCAACGGCCGTTTT+AGG - chr1.2:1235114-1235133 None:intergenic 55.0%
!! GTCGATCCTTTAAGGTGGCC+TGG + chr1.2:1234810-1234829 MS.gene24179:CDS 55.0%
CAGGCTGAATGGGATGAGCC+AGG + chr1.2:1235004-1235023 MS.gene24179:intron 60.0%
CCTGCGCTTACCCGATTCCT+CGG - chr1.2:1234665-1234684 None:intergenic 60.0%
GAATGGGATGAGCCAGGGTG+TGG + chr1.2:1235010-1235029 MS.gene24179:CDS 60.0%
TTCGGTTCCACGCAGAGCTG+CGG + chr1.2:1233299-1233318 MS.gene24179:CDS 60.0%
! AGCTTTTCCGCAGCTCTGCG+TGG - chr1.2:1233309-1233328 None:intergenic 60.0%
CCGAGGAATCGGGTAAGCGC+AGG + chr1.2:1234662-1234681 MS.gene24179:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 1232324 1236866 1232324 ID=MS.gene24179
chr1.2 mRNA 1232324 1236866 1232324 ID=MS.gene24179.t1;Parent=MS.gene24179
chr1.2 exon 1232324 1232426 1232324 ID=MS.gene24179.t1.exon1;Parent=MS.gene24179.t1
chr1.2 CDS 1232324 1232426 1232324 ID=cds.MS.gene24179.t1;Parent=MS.gene24179.t1
chr1.2 exon 1232540 1232652 1232540 ID=MS.gene24179.t1.exon2;Parent=MS.gene24179.t1
chr1.2 CDS 1232540 1232652 1232540 ID=cds.MS.gene24179.t1;Parent=MS.gene24179.t1
chr1.2 exon 1232833 1232931 1232833 ID=MS.gene24179.t1.exon3;Parent=MS.gene24179.t1
chr1.2 CDS 1232833 1232931 1232833 ID=cds.MS.gene24179.t1;Parent=MS.gene24179.t1
chr1.2 exon 1233025 1233081 1233025 ID=MS.gene24179.t1.exon4;Parent=MS.gene24179.t1
chr1.2 CDS 1233025 1233081 1233025 ID=cds.MS.gene24179.t1;Parent=MS.gene24179.t1
chr1.2 exon 1233189 1233341 1233189 ID=MS.gene24179.t1.exon5;Parent=MS.gene24179.t1
chr1.2 CDS 1233189 1233341 1233189 ID=cds.MS.gene24179.t1;Parent=MS.gene24179.t1
chr1.2 exon 1233427 1233511 1233427 ID=MS.gene24179.t1.exon6;Parent=MS.gene24179.t1
chr1.2 CDS 1233427 1233511 1233427 ID=cds.MS.gene24179.t1;Parent=MS.gene24179.t1
chr1.2 exon 1233955 1234045 1233955 ID=MS.gene24179.t1.exon7;Parent=MS.gene24179.t1
chr1.2 CDS 1233955 1234045 1233955 ID=cds.MS.gene24179.t1;Parent=MS.gene24179.t1
chr1.2 exon 1234306 1234470 1234306 ID=MS.gene24179.t1.exon8;Parent=MS.gene24179.t1
chr1.2 CDS 1234306 1234470 1234306 ID=cds.MS.gene24179.t1;Parent=MS.gene24179.t1
chr1.2 exon 1234561 1234683 1234561 ID=MS.gene24179.t1.exon9;Parent=MS.gene24179.t1
chr1.2 CDS 1234561 1234683 1234561 ID=cds.MS.gene24179.t1;Parent=MS.gene24179.t1
chr1.2 exon 1234779 1234854 1234779 ID=MS.gene24179.t1.exon10;Parent=MS.gene24179.t1
chr1.2 CDS 1234779 1234854 1234779 ID=cds.MS.gene24179.t1;Parent=MS.gene24179.t1
chr1.2 exon 1235007 1235142 1235007 ID=MS.gene24179.t1.exon11;Parent=MS.gene24179.t1
chr1.2 CDS 1235007 1235142 1235007 ID=cds.MS.gene24179.t1;Parent=MS.gene24179.t1
chr1.2 exon 1235226 1236307 1235226 ID=MS.gene24179.t1.exon12;Parent=MS.gene24179.t1
chr1.2 CDS 1235226 1236307 1235226 ID=cds.MS.gene24179.t1;Parent=MS.gene24179.t1
chr1.2 exon 1236414 1236604 1236414 ID=MS.gene24179.t1.exon13;Parent=MS.gene24179.t1
chr1.2 CDS 1236414 1236604 1236414 ID=cds.MS.gene24179.t1;Parent=MS.gene24179.t1
chr1.2 exon 1236749 1236866 1236749 ID=MS.gene24179.t1.exon14;Parent=MS.gene24179.t1
chr1.2 CDS 1236749 1236866 1236749 ID=cds.MS.gene24179.t1;Parent=MS.gene24179.t1
Gene Sequence

>MS.gene24179

ATGGCTTCCTTAGAAGAAAAGGCTAAAAGTGTTGGAGGAGTTGTTGGTGGTCAAACTCTTGTTGCTGAAATGAAGTTGCTCAAAGAAATGCAAGAACATTGTGGTAAGTTCATGTTTCCTTCTCTTTTTCTTAATTACTATTGTTATGTTTTATGGTTTCTTAGTTTTCTTGGTAAATGATTTGATTCATATTTAGTTGTACTAATTTTTGTTTAGGGGTTAGAAAGACATTAAATTCAGAATTATGGCATGCTTGTGCTGGCCCTCTTGTGTCATTGCCTCAAGTGGGGGGTCTTGTCTATTACTTCCCTCAAGGACATAGTGAACAGGTAACATTCAAACTCAAGAATCTCTTTTTTATGTTTTAACATTTTTAAGTGCTAATTCATTCATTGCTTATGTTAGTGTTATACTTATAAGTTTCTTTGGTTTAGAATTAGCAAGATTCTAGTTTCTATTGAATGGTTGAAACATGTGTGGAATTTTTGTTTGTGTTTTGTCCTTTTAAGGTTGCAGCTTCTACTAGAAGAATAGCTACCTCACAGATTCCAAACTACCCTAGTCTTCCATCTCAGTTGTTGTGTCAAGTACAAAATGTCACACTACATGTGAGTAGTGTTCTCTCTTGATTTACCACTTTTTGCTGTTGCATTTCAACTTCAAATTATCATAACCCCTTAAATTGTATGTTTTGATAACAGGCTGACAAGGAGACAGATGAAATCTATGCTCAAATGACTCTCCAACCACTGAATTCTGTAAGCTATATGAAGTAGTTCTAGAATTATTGTTGTTGTTTTTGTACATCTGAATGTTATTGGCTATGATTATTTTTGATGTATTATTTTCCATTAATTTGTGTTAGGAAAAAGAAGTGTTTCCGGTATCTGAGTTTGGACTAAACAAAAGTAAACATCCAACTGAGTTTTTCTGCAAAACTTTGACGGCTAGTGATACTAGCACACATGGTGGCTTTTCGGTTCCACGCAGAGCTGCGGAAAAGCTATTTCCTCCATTGGTAAGGCTATATAGCACTAGTTGGTTGCGTCCCTCTTTTATGGCTGTACAAGAACCCTCATTTGATTAGTGTGTTTTGGTTTTAGGATTACACAATTCAACCCCCAACTCAAGAACTTGTTGTTCGAGATTTGCATGATAATACATGGACATTTCGACATATCTACCGAGGTGAGGATCTTTTCTGCATCTATGTAGCACCTAGCACCTACACTTTAGATTAATGGTGTGTCCGGTGTATGATACGTGTCAGAATCGGTCACCGACACATGTGTTACATTCAATTTTTTTTCTCCTTTTCAAATTATTATCAATGCCGGTTTCATGTGTGGTGTTCGTATCTGTGTTAATGCTCCATAGTTTTCTACCCTTGTCTATTGGTTTGGTAAAATAAATAGGAATGAATATTTGTGGTTGTGGATTACATATTGTATTATTTTAACTGCATCATTATCATTCCTCTTGGCTGCAAGTTATTATTGCTTGGGTTTCAATGTTTCCTTTATCTTATTGCTTGGGTTTCAATGTTTCCTTTATCTTAACCTTCAAAATTAGTCATAAAAGAGCCTGATCGAGTTAGATCCTTACATTTTTTTCCTACATTTTTCATGTAGGTCAGCCGAAGAGACATCTTCTCACAACGGGTTGGAGTCTGTTTGTCGGCTCAAAAAGGCTTAAAGCAGGCGATTCTGTTCTTTTTATCAGGTAAATTTTGTTTGCTTTATTTTTGTCGACTAGCTACAACATGATATGAAACTCTGTTGTTATCTGAATATAGGAAGAATAACTAGTTTGTAGAACAAAGTCTGCATAATTTTTCTAATTAGAGTCGATACATTGCAATATAATGGTTTTCAATATTGGGAAAATTATGGAATTCAGATTAGCAACTTATTATTTTAAATTCTGACCAATAATCATCTTTACATAACTTAATACTAAGTGTGATGTGTCATTGTTACAAGGGATGAGAAGTCGCAATTGCGAGTTGGTGTAAGGCGTGCTAATCGTCAACAGACAACACTGCCATCATCAGTACTTTCTGCTGATAGCATGCACATTGGTGTGCTTGCTGCTGCAGCTCATGCTGCTGCTAATCGAAGTCCATTCACGATTTTCTACAATCCAAGGTGTGCCTAAATATTTTATACCTCACTTGACATATAATATTTTTAGATCTAATCGTGGTACTAATTTCTTCTTGAGTGTATTATTTGCAGGGCATGTCCTTCAGATTTTGTTATTCCACTGGCCAAATACAGAAAATCTGTTTATGGGACTCAGCTGTCAGCTGGCATGAGATTTGGTATGATGTTTGAGACCGAGGAATCGGGTAAGCGCAGGTAATTTCCTGAATTCTTCTGAACTGTTTTCTGTGATATGTGCAAATTCTTGAACTAACAAGAATAGTTGATATATATTTCTTCTTATTCTGCAGATATATGGGTACAATTGTAGGTATCAGTGATGTCGATCCTTTAAGGTGGCCTGGTTCTAAGTGGCGAAATATTCAGGTAGGATAAGTTCTGGTAACCCCGGTTATTAAGATCTACCATTACCGACTAATTGTATGGTTTCATCTAATATTTCTATAAAACATACTCTATGTTGGACCTTAATCTTAGTAATATAGTTGGCTTAAGTAAATTTCTTTGTAAATAAACAGGCTGAATGGGATGAGCCAGGGTGTGGTGATAAGCAAAATAGGGTTAGTGTTTGGGAGATCGAGACTCCAGAAAGCCTTTTCATCTTTCCTTCTTTGACTTCAAGCCTAAAACGGCCGTTGCAATCCGGATATTTGGGTAAGTTTCTTAATTCTCTATTCCCACCTTATCAAAATGTCTTGTACTTGATCACTAGTAGTAATTTTGGTTCTGTGATGCAGAAAATGAGTGGGGACCTTTGATACGAAGACCCTTTATTAAAGTACCTGAAAATGGAGGAACAATGGAGCTCTCAAACTCGATGCCAAATCTCTACCAAGAAAACATGATGAAGATGTTTTATAAACCACAGGTGATCAACAACAATGGAGCCTTTTTACCTATCATGCAACAAGATTATGCTCCTACAAGAGTTCCCTTGCAAGATATGAAGCCCACACAGGCAATAGATAATCCGAAAGTTCACCTTTCAAGCACAGAAAGCATACCTAATAATACCTTAAATATGCATTCATTGTTGAAAAGTGACCAACTGGAAAAGTTGCAGCCTTTGGCCAAAACCGATAATTCAAAATTAGAATCCGAGGTGTTATCTGATCATATGTTTGACTTCCCTTCTTTTGAAAGCTGCAACAACATTGAAAAGGTGAATACGGTAAACCAATTAACATATCATAATCAAAACCAAAACCAAAGTCAAAATCCATTACTCGCTCATACTAGTCCATGGACTATGCAGCAGCCTCAGTTAGAATCATCAATGTCACATCCTCAACTGATTGACATGGTCCAACCCGATTCTTCTATTGTAAACAGCATGCTTCCTCAGCTAGACGTAGACGAATGGATGATGTATTCTTCTTGTCAGCCTCAAGCAGTGAATCCATCGATACCTTCAATGAACCAAGAAGTGTGGGATAATTATGTAAAGAATTTTAACTTGAGGGATCTTTCAGCTGAAAGCAATAACCAAAGTGAAATTTGTGTCAATGTTGATGCTAGTAATATTGTGAGTACCACTATGGTTGATCCTTCTACTTCAAGCACCATTTTCGACGACTTTTGCTCAATGAAGGATAAAGATTTTCAGCACCCTCAAGATTGCATGATTGGCAACTTAAGTTCTAGTCAAGATGGCCAGTCTCAGATTACCTCTGCTAGTCTAGCTGAGTCGCACGCCTTTTCTCTGCGAGACAACTCTGGTGGTACTTCTTCAAGCCATGTTGATTTTGATGAAAGTAGCTTTCTGCAGAATAATAACTCTTGGAAGCAAGTAGCTGCACCAATCCGAACCTACACAAAGGTAACATTATTTCTGTAATGTTGGCATGAATGTTATTGTTTTTTCCAATTTGTTTCAATCTTGTATATCATGATGGTATTTATTGTGTCTGTGGTGTGTGTGACAGGTGCAAAAAGCAGGTTCTGTAGGAAGATCAATTGATGTGACTACTTTCAAGAACTATGAAGAGTTGATCCGCGCAATTGAATGCATGTTTGGACTGGACGGTCTGCTGAATGACACAAAAGGTTCTGGATGGAAATTAGTATATGTAGATTATGAGAGTGATGTTCTGCTTGTTGGAGATGATCCTTGGGAGTAAGTTTCTTACCCTTCTTTCGTGTAATGTTTGATCTTTGACACTTAAGTTTAATAGTCTTATTTTGGTTGCATTTTTTCAGACAAAAAAAAGACCCTTTTTAGATATTAAAACTTTTGTAACAATGTTGTGATCTTGTGTAGGGAATTTGTGGGGTGTGTCCGCTGTATACGAATATTATCACCTTCAGAAGTTAAAGAGATGAGTGAAGAAGGGATGAAGCTTCTAAACAGTGGAGCATTGCAAGGAATCAATGTGTGA
Protein sequence

>MS.gene24179.t1

MASLEEKAKSVGGVVGGQTLVAEMKLLKEMQEHCGVRKTLNSELWHACAGPLVSLPQVGGLVYYFPQGHSEQVAASTRRIATSQIPNYPSLPSQLLCQVQNVTLHADKETDEIYAQMTLQPLNSEKEVFPVSEFGLNKSKHPTEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLKAGDSVLFIRDEKSQLRVGVRRANRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSDFVIPLAKYRKSVYGTQLSAGMRFGMMFETEESGKRRYMGTIVGISDVDPLRWPGSKWRNIQAEWDEPGCGDKQNRVSVWEIETPESLFIFPSLTSSLKRPLQSGYLENEWGPLIRRPFIKVPENGGTMELSNSMPNLYQENMMKMFYKPQVINNNGAFLPIMQQDYAPTRVPLQDMKPTQAIDNPKVHLSSTESIPNNTLNMHSLLKSDQLEKLQPLAKTDNSKLESEVLSDHMFDFPSFESCNNIEKVNTVNQLTYHNQNQNQSQNPLLAHTSPWTMQQPQLESSMSHPQLIDMVQPDSSIVNSMLPQLDVDEWMMYSSCQPQAVNPSIPSMNQEVWDNYVKNFNLRDLSAESNNQSEICVNVDASNIVSTTMVDPSTSSTIFDDFCSMKDKDFQHPQDCMIGNLSSSQDGQSQITSASLAESHAFSLRDNSGGTSSSHVDFDESSFLQNNNSWKQVAAPIRTYTKVQKAGSVGRSIDVTTFKNYEELIRAIECMFGLDGLLNDTKGSGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPSEVKEMSEEGMKLLNSGALQGINV