AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24195

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24195.t1 MTR_1g023660 98.235 340 5 1 1 339 1 340 0.0 699
MS.gene24195.t1 MTR_8g099780 50.000 348 126 10 2 339 3 312 5.49e-104 308
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24195.t1 AT5G42520 64.804 358 91 15 1 339 1 342 1.63e-149 424
MS.gene24195.t1 AT5G42520 63.687 358 91 15 1 339 1 338 2.96e-145 414
MS.gene24195.t1 AT5G42520 62.199 291 85 11 65 339 1 282 3.52e-116 338
MS.gene24195.t1 AT2G21240 48.830 342 115 7 5 339 8 296 4.97e-100 297
MS.gene24195.t1 AT2G21240 48.830 342 115 7 5 339 8 296 4.97e-100 297
MS.gene24195.t1 AT4G38910 44.970 338 121 7 5 339 8 283 1.22e-92 278
MS.gene24195.t1 AT4G38910 44.937 316 112 6 24 339 5 258 2.33e-86 261
MS.gene24195.t1 AT2G35550 55.932 118 52 0 222 339 109 226 1.06e-45 155
MS.gene24195.t1 AT2G35550 55.932 118 52 0 222 339 109 226 1.06e-45 155
MS.gene24195.t1 AT2G35550 55.932 118 52 0 222 339 109 226 1.06e-45 155
MS.gene24195.t1 AT2G35550 55.932 118 52 0 222 339 154 271 1.44e-45 156
MS.gene24195.t1 AT1G68120 57.009 107 46 0 233 339 163 269 7.61e-44 152
MS.gene24195.t1 AT2G01930 56.364 110 48 0 230 339 174 283 1.27e-43 152
MS.gene24195.t1 AT2G01930 56.364 110 48 0 230 339 174 283 1.27e-43 152
MS.gene24195.t1 AT1G14685 55.455 110 49 0 230 339 170 279 1.36e-42 149
MS.gene24195.t1 AT1G14685 55.455 110 49 0 230 339 170 279 1.36e-42 149
MS.gene24195.t1 AT1G14685 55.455 110 49 0 230 339 170 279 1.36e-42 149
MS.gene24195.t1 AT1G14685 55.455 110 49 0 230 339 170 279 1.36e-42 149

Find 87 sgRNAs with CRISPR-Local

Find 109 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTGGCCCAATGGTCTTTA+AGG 0.149233 1.2:+1439870 None:intergenic
GGTAAACCATTTGCCTAATA+TGG 0.151975 1.2:-1440461 MS.gene24195:CDS
CCATTCAAGCTCTTTGTTGT+TGG 0.281988 1.2:+1440243 None:intergenic
TTGCTGTACAACCACTTTAT+CGG 0.289810 1.2:-1440023 MS.gene24195:CDS
TCTGGCCCTCTCCGAGAAAA+AGG 0.299212 1.2:-1440686 MS.gene24195:CDS
AGTAGTGAGGAAATGATAAA+TGG 0.302982 1.2:-1440217 MS.gene24195:CDS
GATTGACATAATTTGCTTCA+TGG 0.306231 1.2:+1440744 None:intergenic
CTGATGGACGATCGTGAAAA+TGG 0.307285 1.2:-1440969 MS.gene24195:CDS
CTTACTTTCCTTTGGTCGTT+TGG 0.335012 1.2:+1440345 None:intergenic
TAAGAAGAATCACCCATATT+AGG 0.336214 1.2:+1440448 None:intergenic
CAATGGTCTTTAAGGTCAAC+CGG 0.380775 1.2:+1439878 None:intergenic
TTTCCCAACCTCTGAAGAAA+TGG 0.384675 1.2:+1440381 None:intergenic
GAATCAGACTTACTTTCCTT+TGG 0.398078 1.2:+1440337 None:intergenic
CCAACAACAAAGAGCTTGAA+TGG 0.401945 1.2:-1440243 MS.gene24195:CDS
GGCCAGATTTCTTTCTTGAA+TGG 0.411936 1.2:+1440702 None:intergenic
GGAACGGAATAATGCACTTA+TGG 0.418242 1.2:-1440611 MS.gene24195:CDS
CGAGAAAATGCTTTGGCCAA+TGG 0.428561 1.2:-1440556 MS.gene24195:CDS
GTATCGATTTGTACCATGTT+TGG 0.434696 1.2:+1439853 None:intergenic
TTCCCAACCTCTGAAGAAAT+GGG 0.437141 1.2:+1440382 None:intergenic
AGGTTTCCAATCAGCCTTTG+AGG 0.441798 1.2:+1440165 None:intergenic
TATACATCACCTTCCGCAAC+AGG 0.447735 1.2:-1440482 MS.gene24195:CDS
AATCACCCATATTAGGCAAA+TGG 0.448313 1.2:+1440455 None:intergenic
TTGTACCATGTTTGGCCCAA+TGG 0.454297 1.2:+1439861 None:intergenic
TAGCAGCCTCAAAGGCTGAT+TGG 0.454649 1.2:-1440171 MS.gene24195:CDS
AATATGGGTGATTCTTCTTA+CGG 0.455899 1.2:-1440445 MS.gene24195:CDS
AGATCAATATAAATCTGCTC+AGG 0.457509 1.2:-1440934 MS.gene24195:CDS
TTCTGAGACAGTGCTACAAA+TGG 0.466001 1.2:-1440069 MS.gene24195:CDS
GTACAAGAGCATGCTGGTGC+TGG 0.473862 1.2:+1440097 None:intergenic
GCACCAGCATGCTCTTGTAC+TGG 0.474798 1.2:-1440094 MS.gene24195:CDS
AACAAAAGGCATGCTCGAAT+AGG 0.478414 1.2:-1439977 MS.gene24195:CDS
CGGTTGACCTTAAAGACCAT+TGG 0.478594 1.2:-1439877 MS.gene24195:CDS
TCTGAGACAGTGCTACAAAT+GGG 0.478630 1.2:-1440068 MS.gene24195:CDS
GTAAACCATTTGCCTAATAT+GGG 0.479892 1.2:-1440460 MS.gene24195:CDS
CAGTGCTACAAATGGGGTAA+TGG 0.484703 1.2:-1440061 MS.gene24195:CDS
TCAGTTTCGAGAAAATGCTT+TGG 0.485734 1.2:-1440563 MS.gene24195:CDS
AGCCATTCAAGAAAGAAATC+TGG 0.489436 1.2:-1440704 MS.gene24195:CDS
CCCCGTGAGATTTGACATCC+TGG 0.492305 1.2:+1440514 None:intergenic
TGATTGGAAACCTCAGGACT+TGG 0.494236 1.2:-1440155 MS.gene24195:CDS
GGCAAATGGTTTACCTGTTG+CGG 0.495581 1.2:+1440469 None:intergenic
TTCCAGCTGTGCCCAACAAA+AGG 0.495805 1.2:-1439991 MS.gene24195:CDS
GAAGCAAATTATGTCAATCA+TGG 0.497300 1.2:-1440740 MS.gene24195:CDS
CTTAGCCGGCTTGCAGCTGA+AGG 0.500276 1.2:-1439917 MS.gene24195:CDS
TTGAATCATCGTATGCAACT+TGG 0.503216 1.2:+1440125 None:intergenic
GACATAATTTGCTTCATGGA+AGG 0.504898 1.2:+1440748 None:intergenic
ATATAAATCTGCTCAGGGAC+AGG 0.509112 1.2:-1440928 MS.gene24195:intron
CTTTCAATAAACTACTTAGC+CGG 0.514461 1.2:-1439931 MS.gene24195:CDS
TTGTTGGGCACAGCTGGAAG+TGG 0.517836 1.2:+1439995 None:intergenic
GGTATGTCATCATGCCCTCC+AGG 0.518820 1.2:-1440532 MS.gene24195:CDS
GGTTGACCTTAAAGACCATT+GGG 0.521688 1.2:-1439876 MS.gene24195:CDS
TTTGGTCGTTTGGCACGCCT+AGG 0.528022 1.2:+1440355 None:intergenic
CAAGCAGTTAGCAGCCTCAA+AGG 0.533010 1.2:-1440179 MS.gene24195:CDS
AAAGGCTGATTGGAAACCTC+AGG 0.538629 1.2:-1440161 MS.gene24195:CDS
CAATTGCAGTATCTCGCTGC+AGG 0.542654 1.2:+1440635 None:intergenic
ACAAATGGGGTAATGGAGGT+TGG 0.545815 1.2:-1440054 MS.gene24195:CDS
ATCTAGAAAAGTCAAGAAAG+AGG 0.546447 1.2:-1440293 MS.gene24195:CDS
TCCAGGATGTCAAATCTCAC+GGG 0.552910 1.2:-1440515 MS.gene24195:CDS
CTCCAGGATGTCAAATCTCA+CGG 0.563255 1.2:-1440516 MS.gene24195:CDS
GCATGATGACATACCACCAT+TGG 0.567052 1.2:+1440540 None:intergenic
GGTCGTTTGGCACGCCTAGG+TGG 0.570239 1.2:+1440358 None:intergenic
TGGTTCAATGCCAAGTCCTG+AGG 0.592965 1.2:+1440145 None:intergenic
AGAGCATGCTGGTGCTGGCA+TGG 0.596415 1.2:+1440102 None:intergenic
CCCAACCTCTGAAGAAATGG+GGG 0.597363 1.2:+1440384 None:intergenic
GCTTGAATGGAAGAGTAGTG+AGG 0.599481 1.2:-1440230 MS.gene24195:CDS
CATGCCCTTCAGCTGCAAGC+CGG 0.601437 1.2:+1439912 None:intergenic
AAAAGGCATGCTCGAATAGG+TGG 0.604503 1.2:-1439974 MS.gene24195:CDS
AAAGACCATTGGGCCAAACA+TGG 0.604624 1.2:-1439866 MS.gene24195:CDS
AAGTGGATATACCGATAAAG+TGG 0.604637 1.2:+1440012 None:intergenic
TCTAGAAAAGTCAAGAAAGA+GGG 0.605111 1.2:-1440292 MS.gene24195:CDS
AATGGTTTACCTGTTGCGGA+AGG 0.606017 1.2:+1440473 None:intergenic
GAGATACTGCAATTGCGGAA+CGG 0.606489 1.2:-1440627 MS.gene24195:CDS
TGCTACAAATGGGGTAATGG+AGG 0.606890 1.2:-1440058 MS.gene24195:CDS
TCCCAACCTCTGAAGAAATG+GGG 0.610433 1.2:+1440383 None:intergenic
GATCAATATAAATCTGCTCA+GGG 0.611740 1.2:-1440933 MS.gene24195:CDS
GCAGCGAGATACTGCAATTG+CGG 0.613903 1.2:-1440632 MS.gene24195:CDS
GAAAATGCTTTGGCCAATGG+TGG 0.615877 1.2:-1440553 MS.gene24195:CDS
TAGGCGTGCCAAACGACCAA+AGG 0.616901 1.2:-1440353 MS.gene24195:CDS
CAGAGGTTGGGAAACCACCT+AGG 0.616912 1.2:-1440372 MS.gene24195:CDS
AGCACTTGCAGAACGTGACA+TGG 0.620297 1.2:-1440662 MS.gene24195:CDS
TGGACGATCGTGAAAATGGA+AGG 0.626784 1.2:-1440965 MS.gene24195:CDS
TTAGCCGGCTTGCAGCTGAA+GGG 0.630246 1.2:-1439916 MS.gene24195:CDS
CTGAGACAGTGCTACAAATG+GGG 0.642920 1.2:-1440067 MS.gene24195:CDS
AGGGCATGATCTCTCACACC+CGG 0.643910 1.2:-1439897 MS.gene24195:CDS
ACACCAGTACAAGAGCATGC+TGG 0.644328 1.2:+1440091 None:intergenic
GTGAGATTTGACATCCTGGA+GGG 0.655568 1.2:+1440518 None:intergenic
CCAGGATGTCAAATCTCACG+GGG 0.670697 1.2:-1440514 MS.gene24195:CDS
AATGGTCTTTAAGGTCAACC+GGG 0.672212 1.2:+1439879 None:intergenic
CGTGAGATTTGACATCCTGG+AGG 0.739694 1.2:+1440517 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCTTGACTTTTCTAGATTT+TGG + chr1.2:1440509-1440528 None:intergenic 25.0%
!!! TTAAATTTATTTCTGAGCAG+AGG + chr1.2:1439915-1439934 None:intergenic 25.0%
AATATGGGTGATTCTTCTTA+CGG - chr1.2:1440359-1440378 MS.gene24195:CDS 30.0%
AGATCAATATAAATCTGCTC+AGG - chr1.2:1439870-1439889 MS.gene24195:CDS 30.0%
AGTAGTGAGGAAATGATAAA+TGG - chr1.2:1440587-1440606 MS.gene24195:CDS 30.0%
ATCTAGAAAAGTCAAGAAAG+AGG - chr1.2:1440511-1440530 MS.gene24195:CDS 30.0%
CTTTCAATAAACTACTTAGC+CGG - chr1.2:1440873-1440892 MS.gene24195:intron 30.0%
GAAGCAAATTATGTCAATCA+TGG - chr1.2:1440064-1440083 MS.gene24195:CDS 30.0%
GATCAATATAAATCTGCTCA+GGG - chr1.2:1439871-1439890 MS.gene24195:CDS 30.0%
GTAAACCATTTGCCTAATAT+GGG - chr1.2:1440344-1440363 MS.gene24195:CDS 30.0%
TAAGAAGAATCACCCATATT+AGG + chr1.2:1440359-1440378 None:intergenic 30.0%
TCTAGAAAAGTCAAGAAAGA+GGG - chr1.2:1440512-1440531 MS.gene24195:CDS 30.0%
!! GATTGACATAATTTGCTTCA+TGG + chr1.2:1440063-1440082 None:intergenic 30.0%
!! TCTAAAAATTGCTTTTGCAG+TGG - chr1.2:1440009-1440028 MS.gene24195:CDS 30.0%
AAGTGGATATACCGATAAAG+TGG + chr1.2:1440795-1440814 None:intergenic 35.0%
AATCACCCATATTAGGCAAA+TGG + chr1.2:1440352-1440371 None:intergenic 35.0%
AGCCATTCAAGAAAGAAATC+TGG - chr1.2:1440100-1440119 MS.gene24195:CDS 35.0%
ATAGGTGGTAGAAAAATGAG+TGG - chr1.2:1440845-1440864 MS.gene24195:intron 35.0%
GAATCAGACTTACTTTCCTT+TGG + chr1.2:1440470-1440489 None:intergenic 35.0%
GCTGCATATAAGCCTTAAAA+GGG - chr1.2:1439965-1439984 MS.gene24195:CDS 35.0%
GGTAAACCATTTGCCTAATA+TGG - chr1.2:1440343-1440362 MS.gene24195:CDS 35.0%
TCAGTTTCGAGAAAATGCTT+TGG - chr1.2:1440241-1440260 MS.gene24195:CDS 35.0%
TGCTGCATATAAGCCTTAAA+AGG - chr1.2:1439964-1439983 MS.gene24195:CDS 35.0%
TTGAATCATCGTATGCAACT+TGG + chr1.2:1440682-1440701 None:intergenic 35.0%
TTGCTGTACAACCACTTTAT+CGG - chr1.2:1440781-1440800 MS.gene24195:intron 35.0%
! AAGCATTTTCTCGAAACTGA+AGG + chr1.2:1440241-1440260 None:intergenic 35.0%
! AGCATTTTCTCGAAACTGAA+GGG + chr1.2:1440240-1440259 None:intergenic 35.0%
!! GACATAATTTGCTTCATGGA+AGG + chr1.2:1440059-1440078 None:intergenic 35.0%
!! GTATCGATTTGTACCATGTT+TGG + chr1.2:1440954-1440973 None:intergenic 35.0%
!!! GATTTTGGAGTCTTCTTGTT+AGG + chr1.2:1440494-1440513 None:intergenic 35.0%
ATATAAATCTGCTCAGGGAC+AGG - chr1.2:1439876-1439895 MS.gene24195:CDS 40.0%
CCAACAACAAAGAGCTTGAA+TGG - chr1.2:1440561-1440580 MS.gene24195:CDS 40.0%
CTTACTTTCCTTTGGTCGTT+TGG + chr1.2:1440462-1440481 None:intergenic 40.0%
GGAACGGAATAATGCACTTA+TGG - chr1.2:1440193-1440212 MS.gene24195:CDS 40.0%
GGCCAGATTTCTTTCTTGAA+TGG + chr1.2:1440105-1440124 None:intergenic 40.0%
GGTTGACCTTAAAGACCATT+GGG - chr1.2:1440928-1440947 MS.gene24195:intron 40.0%
! AACAAAAGGCATGCTCGAAT+AGG - chr1.2:1440827-1440846 MS.gene24195:intron 40.0%
! ATTCGAGCATGCCTTTTGTT+GGG + chr1.2:1440827-1440846 None:intergenic 40.0%
! CCATTCAAGCTCTTTGTTGT+TGG + chr1.2:1440564-1440583 None:intergenic 40.0%
! TATTCGAGCATGCCTTTTGT+TGG + chr1.2:1440828-1440847 None:intergenic 40.0%
! TCTGAGACAGTGCTACAAAT+GGG - chr1.2:1440736-1440755 MS.gene24195:CDS 40.0%
! TTCCCAACCTCTGAAGAAAT+GGG + chr1.2:1440425-1440444 None:intergenic 40.0%
! TTTCCCAACCTCTGAAGAAA+TGG + chr1.2:1440426-1440445 None:intergenic 40.0%
!! AATGGTCTTTAAGGTCAACC+GGG + chr1.2:1440928-1440947 None:intergenic 40.0%
!! CAATGGTCTTTAAGGTCAAC+CGG + chr1.2:1440929-1440948 None:intergenic 40.0%
!! TTCTGAGACAGTGCTACAAA+TGG - chr1.2:1440735-1440754 MS.gene24195:CDS 40.0%
!!! GTAGAGAAAGCACCCTTTTA+AGG + chr1.2:1439980-1439999 None:intergenic 40.0%
AAAGACCATTGGGCCAAACA+TGG - chr1.2:1440938-1440957 MS.gene24195:CDS 45.0%
AAAGGCTGATTGGAAACCTC+AGG - chr1.2:1440643-1440662 MS.gene24195:CDS 45.0%
AATGGTTTACCTGTTGCGGA+AGG + chr1.2:1440334-1440353 None:intergenic 45.0%
AGGTTTCCAATCAGCCTTTG+AGG + chr1.2:1440642-1440661 None:intergenic 45.0%
CAGTGCTACAAATGGGGTAA+TGG - chr1.2:1440743-1440762 MS.gene24195:CDS 45.0%
CGAGAAAATGCTTTGGCCAA+TGG - chr1.2:1440248-1440267 MS.gene24195:CDS 45.0%
CGGTTGACCTTAAAGACCAT+TGG - chr1.2:1440927-1440946 MS.gene24195:intron 45.0%
CTCCAGGATGTCAAATCTCA+CGG - chr1.2:1440288-1440307 MS.gene24195:CDS 45.0%
CTGAGACAGTGCTACAAATG+GGG - chr1.2:1440737-1440756 MS.gene24195:CDS 45.0%
GAAAATGCTTTGGCCAATGG+TGG - chr1.2:1440251-1440270 MS.gene24195:CDS 45.0%
GAGATACTGCAATTGCGGAA+CGG - chr1.2:1440177-1440196 MS.gene24195:CDS 45.0%
GCATGATGACATACCACCAT+TGG + chr1.2:1440267-1440286 None:intergenic 45.0%
GCTTGAATGGAAGAGTAGTG+AGG - chr1.2:1440574-1440593 MS.gene24195:CDS 45.0%
GGCAAATGGTTTACCTGTTG+CGG + chr1.2:1440338-1440357 None:intergenic 45.0%
GTGAGATTTGACATCCTGGA+GGG + chr1.2:1440289-1440308 None:intergenic 45.0%
GTTTGGCCCAATGGTCTTTA+AGG + chr1.2:1440937-1440956 None:intergenic 45.0%
TATACATCACCTTCCGCAAC+AGG - chr1.2:1440322-1440341 MS.gene24195:CDS 45.0%
TCCAGGATGTCAAATCTCAC+GGG - chr1.2:1440289-1440308 MS.gene24195:CDS 45.0%
TGATTGGAAACCTCAGGACT+TGG - chr1.2:1440649-1440668 MS.gene24195:CDS 45.0%
TGGACGATCGTGAAAATGGA+AGG - chr1.2:1439839-1439858 MS.gene24195:CDS 45.0%
TTGTACCATGTTTGGCCCAA+TGG + chr1.2:1440946-1440965 None:intergenic 45.0%
! AAAAGGCATGCTCGAATAGG+TGG - chr1.2:1440830-1440849 MS.gene24195:intron 45.0%
! TCCCAACCTCTGAAGAAATG+GGG + chr1.2:1440424-1440443 None:intergenic 45.0%
! TGCTACAAATGGGGTAATGG+AGG - chr1.2:1440746-1440765 MS.gene24195:CDS 45.0%
!! ACAAATGGGGTAATGGAGGT+TGG - chr1.2:1440750-1440769 MS.gene24195:CDS 45.0%
!! TGCAAGTGCTGCCTTTTTCT+CGG + chr1.2:1440132-1440151 None:intergenic 45.0%
AGCACTTGCAGAACGTGACA+TGG - chr1.2:1440142-1440161 MS.gene24195:CDS 50.0%
CAAGCAGTTAGCAGCCTCAA+AGG - chr1.2:1440625-1440644 MS.gene24195:CDS 50.0%
CAATTGCAGTATCTCGCTGC+AGG + chr1.2:1440172-1440191 None:intergenic 50.0%
CCAGGATGTCAAATCTCACG+GGG - chr1.2:1440290-1440309 MS.gene24195:CDS 50.0%
CCCCCATTTCTTCAGAGGTT+GGG - chr1.2:1440420-1440439 MS.gene24195:CDS 50.0%
CGTGAGATTTGACATCCTGG+AGG + chr1.2:1440290-1440309 None:intergenic 50.0%
GCAGCGAGATACTGCAATTG+CGG - chr1.2:1440172-1440191 MS.gene24195:CDS 50.0%
TAGCAGCCTCAAAGGCTGAT+TGG - chr1.2:1440633-1440652 MS.gene24195:CDS 50.0%
TGGTTCAATGCCAAGTCCTG+AGG + chr1.2:1440662-1440681 None:intergenic 50.0%
TTCCAGCTGTGCCCAACAAA+AGG - chr1.2:1440813-1440832 MS.gene24195:intron 50.0%
! ACACCAGTACAAGAGCATGC+TGG + chr1.2:1440716-1440735 None:intergenic 50.0%
! CCCAACCTCTGAAGAAATGG+GGG + chr1.2:1440423-1440442 None:intergenic 50.0%
! TGCTGCCTTTTTCTCGGAGA+GGG + chr1.2:1440126-1440145 None:intergenic 50.0%
AGCAGCCCCCATTTCTTCAG+AGG - chr1.2:1440415-1440434 MS.gene24195:CDS 55.0%
AGGGCATGATCTCTCACACC+CGG - chr1.2:1440907-1440926 MS.gene24195:intron 55.0%
CAGAGGTTGGGAAACCACCT+AGG - chr1.2:1440432-1440451 MS.gene24195:CDS 55.0%
CCCCGTGAGATTTGACATCC+TGG + chr1.2:1440293-1440312 None:intergenic 55.0%
CTGAAGAAATGGGGGCTGCT+GGG + chr1.2:1440415-1440434 None:intergenic 55.0%
GCACCAGCATGCTCTTGTAC+TGG - chr1.2:1440710-1440729 MS.gene24195:CDS 55.0%
GCCCCCATTTCTTCAGAGGT+TGG - chr1.2:1440419-1440438 MS.gene24195:CDS 55.0%
GGTATGTCATCATGCCCTCC+AGG - chr1.2:1440272-1440291 MS.gene24195:CDS 55.0%
TAGGCGTGCCAAACGACCAA+AGG - chr1.2:1440451-1440470 MS.gene24195:CDS 55.0%
TCTGAAGAAATGGGGGCTGC+TGG + chr1.2:1440416-1440435 None:intergenic 55.0%
TCTGGCCCTCTCCGAGAAAA+AGG - chr1.2:1440118-1440137 MS.gene24195:CDS 55.0%
TTGTTGGGCACAGCTGGAAG+TGG + chr1.2:1440812-1440831 None:intergenic 55.0%
TTTGGTCGTTTGGCACGCCT+AGG + chr1.2:1440452-1440471 None:intergenic 55.0%
! GTACAAGAGCATGCTGGTGC+TGG + chr1.2:1440710-1440729 None:intergenic 55.0%
! GTGCTGCCTTTTTCTCGGAG+AGG + chr1.2:1440127-1440146 None:intergenic 55.0%
! TGCCTTTTGTTGGGCACAGC+TGG + chr1.2:1440818-1440837 None:intergenic 55.0%
!! TTAGCCGGCTTGCAGCTGAA+GGG - chr1.2:1440888-1440907 MS.gene24195:intron 55.0%
AAGAAATGGGGGCTGCTGGG+AGG + chr1.2:1440412-1440431 None:intergenic 60.0%
AGAAATGGGGGCTGCTGGGA+GGG + chr1.2:1440411-1440430 None:intergenic 60.0%
CATGCCCTTCAGCTGCAAGC+CGG + chr1.2:1440895-1440914 None:intergenic 60.0%
!! AGAGCATGCTGGTGCTGGCA+TGG + chr1.2:1440705-1440724 None:intergenic 60.0%
!! CTTAGCCGGCTTGCAGCTGA+AGG - chr1.2:1440887-1440906 MS.gene24195:intron 60.0%
GGTCGTTTGGCACGCCTAGG+TGG + chr1.2:1440449-1440468 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 1439838 1440988 1439838 ID=MS.gene24195
chr1.2 mRNA 1439838 1440988 1439838 ID=MS.gene24195.t1;Parent=MS.gene24195
chr1.2 exon 1440929 1440988 1440929 ID=MS.gene24195.t1.exon1;Parent=MS.gene24195.t1
chr1.2 CDS 1440929 1440988 1440929 ID=cds.MS.gene24195.t1;Parent=MS.gene24195.t1
chr1.2 exon 1439838 1440797 1439838 ID=MS.gene24195.t1.exon2;Parent=MS.gene24195.t1
chr1.2 CDS 1439838 1440797 1439838 ID=cds.MS.gene24195.t1;Parent=MS.gene24195.t1
Gene Sequence

>MS.gene24195

ATGGACGATCGTGAAAATGGAAGGCACAAAGCAGATCAATATAAATCTGCTCAGGGACAGGTATATGAAACACGCCTCTGCTCAGAAATAAATTTAAGTTTGCATGAACATAACAGTTGTTAAAAGTGCTGCATATAAGCCTTAAAAGGGTGCTTTCTCTACTAATATTCTTCTAAAAATTGCTTTTGCAGTGGTTAATGCAACAGCATCATCAGCATCCTTCCATGAAGCAAATTATGTCAATCATGGCTGAACGAGATGCAGCCATTCAAGAAAGAAATCTGGCCCTCTCCGAGAAAAAGGCAGCACTTGCAGAACGTGACATGGCATTCCTGCAGCGAGATACTGCAATTGCGGAACGGAATAATGCACTTATGGAAAGAGATAATGCGATAGCAACCCTTCAGTTTCGAGAAAATGCTTTGGCCAATGGTGGTATGTCATCATGCCCTCCAGGATGTCAAATCTCACGGGGAGTTAAGCATATACATCACCTTCCGCAACAGGTAAACCATTTGCCTAATATGGGTGATTCTTCTTACGGCACACGTGAGTTGCACACAACTGATGCCCTCCCAGCAGCCCCCATTTCTTCAGAGGTTGGGAAACCACCTAGGCGTGCCAAACGACCAAAGGAAAGTAAGTCTGATTCACCTAACAAGAAGACTCCAAAATCTAGAAAAGTCAAGAAAGAGGGTGATGATTTAAACAAGACAATGTTTGCCAACAACAAAGAGCTTGAATGGAAGAGTAGTGAGGAAATGATAAATGGAGATGATGATCTTAACAAGCAGTTAGCAGCCTCAAAGGCTGATTGGAAACCTCAGGACTTGGCATTGAACCAAGTTGCATACGATGATTCAACCATGCCAGCACCAGCATGCTCTTGTACTGGTGTTCTGAGACAGTGCTACAAATGGGGTAATGGAGGTTGGCAATCTGCTTGCTGTACAACCACTTTATCGGTATATCCACTTCCAGCTGTGCCCAACAAAAGGCATGCTCGAATAGGTGGTAGAAAAATGAGTGGAAGTGCTTTCAATAAACTACTTAGCCGGCTTGCAGCTGAAGGGCATGATCTCTCACACCCGGTTGACCTTAAAGACCATTGGGCCAAACATGGTACAAATCGATACATCACAATAAAGTAG
Protein sequence

>MS.gene24195.t1

MDDRENGRHKADQYKSAQGQWLMQQHHQHPSMKQIMSIMAERDAAIQERNLALSEKKAALAERDMAFLQRDTAIAERNNALMERDNAIATLQFRENALANGGMSSCPPGCQISRGVKHIHHLPQQVNHLPNMGDSSYGTRELHTTDALPAAPISSEVGKPPRRAKRPKESKSDSPNKKTPKSRKVKKEGDDLNKTMFANNKELEWKSSEEMINGDDDLNKQLAASKADWKPQDLALNQVAYDDSTMPAPACSCTGVLRQCYKWGNGGWQSACCTTTLSVYPLPAVPNKRHARIGGRKMSGSAFNKLLSRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK