AlfalfaGEDB | MS.gene24195

M. sativa cultivar XinJiangDaYe / MS.gene24195

KEGG: -
GO: -
PFAM: PF06217.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24195.t1	XP_003589387.1	98.2	340	5	1	1	339	1	340	1.30E-160	575.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24195.t1	Q8L999	65.9	358	87	15	1	339	1	342	8.8e-86	318.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24195.t1	G7I6G1	98.2	340	5	1	1	339	1	340	9.1e-161	575.9

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene24195.t1	TF	BBR-BPC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene000525	MS.gene24195	PPI
MS.gene24195	MS.gene030481	PPI
MS.gene79458	MS.gene24195	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24195.t1	MTR_1g023660	98.235	340	5	1	1	339	1	340	0.0	699
MS.gene24195.t1	MTR_8g099780	50.000	348	126	10	2	339	3	312	5.49e-104	308

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24195.t1	AT5G42520	64.804	358	91	15	1	339	1	342	1.63e-149	424
MS.gene24195.t1	AT5G42520	63.687	358	91	15	1	339	1	338	2.96e-145	414
MS.gene24195.t1	AT5G42520	62.199	291	85	11	65	339	1	282	3.52e-116	338
MS.gene24195.t1	AT2G21240	48.830	342	115	7	5	339	8	296	4.97e-100	297
MS.gene24195.t1	AT2G21240	48.830	342	115	7	5	339	8	296	4.97e-100	297
MS.gene24195.t1	AT4G38910	44.970	338	121	7	5	339	8	283	1.22e-92	278
MS.gene24195.t1	AT4G38910	44.937	316	112	6	24	339	5	258	2.33e-86	261
MS.gene24195.t1	AT2G35550	55.932	118	52	0	222	339	109	226	1.06e-45	155
MS.gene24195.t1	AT2G35550	55.932	118	52	0	222	339	109	226	1.06e-45	155
MS.gene24195.t1	AT2G35550	55.932	118	52	0	222	339	109	226	1.06e-45	155

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Find 87 sgRNAs with CRISPR-Local

Find 109 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGCATGCTCGAATAGG+TGG	0.604503	1.2:-1439974	MS.gene24195:CDS
AAAGACCATTGGGCCAAACA+TGG	0.604624	1.2:-1439866	MS.gene24195:CDS
AAAGGCTGATTGGAAACCTC+AGG	0.538629	1.2:-1440161	MS.gene24195:CDS
AACAAAAGGCATGCTCGAAT+AGG	0.478414	1.2:-1439977	MS.gene24195:CDS
AAGTGGATATACCGATAAAG+TGG	0.604637	1.2:+1440012	None:intergenic
AATATGGGTGATTCTTCTTA+CGG	0.455899	1.2:-1440445	MS.gene24195:CDS
AATCACCCATATTAGGCAAA+TGG	0.448313	1.2:+1440455	None:intergenic
AATGGTCTTTAAGGTCAACC+GGG	0.672212	1.2:+1439879	None:intergenic
AATGGTTTACCTGTTGCGGA+AGG	0.606017	1.2:+1440473	None:intergenic
ACAAATGGGGTAATGGAGGT+TGG	0.545815	1.2:-1440054	MS.gene24195:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATATGGGTGATTCTTCTTA+CGG	-	chr1.2:1440359-1440378	MS.gene24195:CDS	30.0%
AGATCAATATAAATCTGCTC+AGG	-	chr1.2:1439870-1439889	MS.gene24195:CDS	30.0%
AGTAGTGAGGAAATGATAAA+TGG	-	chr1.2:1440587-1440606	MS.gene24195:CDS	30.0%
ATCTAGAAAAGTCAAGAAAG+AGG	-	chr1.2:1440511-1440530	MS.gene24195:CDS	30.0%
CTTTCAATAAACTACTTAGC+CGG	-	chr1.2:1440873-1440892	MS.gene24195:intron	30.0%
GAAGCAAATTATGTCAATCA+TGG	-	chr1.2:1440064-1440083	MS.gene24195:CDS	30.0%
GATCAATATAAATCTGCTCA+GGG	-	chr1.2:1439871-1439890	MS.gene24195:CDS	30.0%
GTAAACCATTTGCCTAATAT+GGG	-	chr1.2:1440344-1440363	MS.gene24195:CDS	30.0%
TAAGAAGAATCACCCATATT+AGG	+	chr1.2:1440359-1440378	None:intergenic	30.0%
TCTAGAAAAGTCAAGAAAGA+GGG	-	chr1.2:1440512-1440531	MS.gene24195:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	1439838	1440988	1439838	ID=MS.gene24195
chr1.2	mRNA	1439838	1440988	1439838	ID=MS.gene24195.t1;Parent=MS.gene24195
chr1.2	exon	1440929	1440988	1440929	ID=MS.gene24195.t1.exon1;Parent=MS.gene24195.t1
chr1.2	CDS	1440929	1440988	1440929	ID=cds.MS.gene24195.t1;Parent=MS.gene24195.t1
chr1.2	exon	1439838	1440797	1439838	ID=MS.gene24195.t1.exon2;Parent=MS.gene24195.t1
chr1.2	CDS	1439838	1440797	1439838	ID=cds.MS.gene24195.t1;Parent=MS.gene24195.t1

Gene Sequence

>MS.gene24195

ATGGACGATCGTGAAAATGGAAGGCACAAAGCAGATCAATATAAATCTGCTCAGGGACAGGTATATGAAACACGCCTCTGCTCAGAAATAAATTTAAGTTTGCATGAACATAACAGTTGTTAAAAGTGCTGCATATAAGCCTTAAAAGGGTGCTTTCTCTACTAATATTCTTCTAAAAATTGCTTTTGCAGTGGTTAATGCAACAGCATCATCAGCATCCTTCCATGAAGCAAATTATGTCAATCATGGCTGAACGAGATGCAGCCATTCAAGAAAGAAATCTGGCCCTCTCCGAGAAAAAGGCAGCACTTGCAGAACGTGACATGGCATTCCTGCAGCGAGATACTGCAATTGCGGAACGGAATAATGCACTTATGGAAAGAGATAATGCGATAGCAACCCTTCAGTTTCGAGAAAATGCTTTGGCCAATGGTGGTATGTCATCATGCCCTCCAGGATGTCAAATCTCACGGGGAGTTAAGCATATACATCACCTTCCGCAACAGGTAAACCATTTGCCTAATATGGGTGATTCTTCTTACGGCACACGTGAGTTGCACACAACTGATGCCCTCCCAGCAGCCCCCATTTCTTCAGAGGTTGGGAAACCACCTAGGCGTGCCAAACGACCAAAGGAAAGTAAGTCTGATTCACCTAACAAGAAGACTCCAAAATCTAGAAAAGTCAAGAAAGAGGGTGATGATTTAAACAAGACAATGTTTGCCAACAACAAAGAGCTTGAATGGAAGAGTAGTGAGGAAATGATAAATGGAGATGATGATCTTAACAAGCAGTTAGCAGCCTCAAAGGCTGATTGGAAACCTCAGGACTTGGCATTGAACCAAGTTGCATACGATGATTCAACCATGCCAGCACCAGCATGCTCTTGTACTGGTGTTCTGAGACAGTGCTACAAATGGGGTAATGGAGGTTGGCAATCTGCTTGCTGTACAACCACTTTATCGGTATATCCACTTCCAGCTGTGCCCAACAAAAGGCATGCTCGAATAGGTGGTAGAAAAATGAGTGGAAGTGCTTTCAATAAACTACTTAGCCGGCTTGCAGCTGAAGGGCATGATCTCTCACACCCGGTTGACCTTAAAGACCATTGGGCCAAACATGGTACAAATCGATACATCACAATAAAGTAG

Protein sequence

>MS.gene24195.t1

MDDRENGRHKADQYKSAQGQWLMQQHHQHPSMKQIMSIMAERDAAIQERNLALSEKKAALAERDMAFLQRDTAIAERNNALMERDNAIATLQFRENALANGGMSSCPPGCQISRGVKHIHHLPQQVNHLPNMGDSSYGTRELHTTDALPAAPISSEVGKPPRRAKRPKESKSDSPNKKTPKSRKVKKEGDDLNKTMFANNKELEWKSSEEMINGDDDLNKQLAASKADWKPQDLALNQVAYDDSTMPAPACSCTGVLRQCYKWGNGGWQSACCTTTLSVYPLPAVPNKRHARIGGRKMSGSAFNKLLSRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK