Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000525.t1 | XP_003630555.2 | 99.4 | 312 | 2 | 0 | 1 | 312 | 1 | 312 | 6.40E-151 | 543.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000525.t1 | Q8S8C6 | 60.2 | 314 | 105 | 5 | 1 | 312 | 1 | 296 | 1.9e-74 | 280.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000525.t1 | G7LI34 | 99.4 | 312 | 2 | 0 | 1 | 312 | 1 | 312 | 4.6e-151 | 543.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene000525.t1 | TF | BBR-BPC |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene000525 | MS.gene24195 | PPI |
| MS.gene000525 | MS.gene63981 | PPI |
| MS.gene000525 | MS.gene27035 | PPI |
| MS.gene000525 | MS.gene64186 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000525.t1 | MTR_8g099780 | 99.359 | 312 | 2 | 0 | 1 | 312 | 1 | 312 | 0.0 | 653 |
| MS.gene000525.t1 | MTR_1g023660 | 49.425 | 348 | 129 | 11 | 3 | 312 | 2 | 340 | 1.12e-105 | 312 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000525.t1 | AT2G21240 | 58.280 | 314 | 111 | 5 | 1 | 312 | 1 | 296 | 1.46e-127 | 366 |
| MS.gene000525.t1 | AT2G21240 | 58.280 | 314 | 111 | 5 | 1 | 312 | 1 | 296 | 1.46e-127 | 366 |
| MS.gene000525.t1 | AT4G38910 | 54.808 | 312 | 112 | 6 | 1 | 312 | 1 | 283 | 1.60e-114 | 332 |
| MS.gene000525.t1 | AT4G38910 | 56.228 | 281 | 96 | 5 | 33 | 312 | 4 | 258 | 2.83e-104 | 305 |
| MS.gene000525.t1 | AT5G42520 | 47.899 | 357 | 122 | 11 | 1 | 312 | 1 | 338 | 1.76e-90 | 273 |
| MS.gene000525.t1 | AT5G42520 | 47.899 | 357 | 126 | 12 | 1 | 312 | 1 | 342 | 2.79e-90 | 273 |
| MS.gene000525.t1 | AT5G42520 | 49.291 | 282 | 98 | 8 | 76 | 312 | 1 | 282 | 8.23e-77 | 236 |
| MS.gene000525.t1 | AT2G35550 | 45.806 | 155 | 77 | 1 | 165 | 312 | 72 | 226 | 1.55e-45 | 154 |
| MS.gene000525.t1 | AT2G35550 | 45.806 | 155 | 77 | 1 | 165 | 312 | 72 | 226 | 1.55e-45 | 154 |
| MS.gene000525.t1 | AT2G35550 | 45.806 | 155 | 77 | 1 | 165 | 312 | 72 | 226 | 1.55e-45 | 154 |
| MS.gene000525.t1 | AT2G35550 | 45.806 | 155 | 77 | 1 | 165 | 312 | 117 | 271 | 2.43e-45 | 155 |
| MS.gene000525.t1 | AT1G14685 | 52.137 | 117 | 56 | 0 | 196 | 312 | 163 | 279 | 3.34e-44 | 152 |
| MS.gene000525.t1 | AT1G14685 | 52.137 | 117 | 56 | 0 | 196 | 312 | 163 | 279 | 3.34e-44 | 152 |
| MS.gene000525.t1 | AT1G14685 | 52.137 | 117 | 56 | 0 | 196 | 312 | 163 | 279 | 3.34e-44 | 152 |
| MS.gene000525.t1 | AT1G14685 | 52.137 | 117 | 56 | 0 | 196 | 312 | 163 | 279 | 3.34e-44 | 152 |
| MS.gene000525.t1 | AT1G68120 | 55.769 | 104 | 46 | 0 | 209 | 312 | 166 | 269 | 1.15e-41 | 145 |
| MS.gene000525.t1 | AT2G01930 | 52.336 | 107 | 51 | 0 | 206 | 312 | 177 | 283 | 6.65e-41 | 144 |
| MS.gene000525.t1 | AT2G01930 | 52.336 | 107 | 51 | 0 | 206 | 312 | 177 | 283 | 6.65e-41 | 144 |
Find 86 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTACCAAAATAAAGAAAA+TGG | 0.208626 | 4.3:-6930230 | MS.gene000525:CDS |
| CTTCTGTCATGTTGGATATA+TGG | 0.216505 | 4.3:+6930371 | None:intergenic |
| ATCTATACCATTGGATCTTA+AGG | 0.242442 | 4.3:-6929888 | MS.gene000525:CDS |
| TCAGAAGTTATAACAGTAAC+TGG | 0.272157 | 4.3:+6930307 | None:intergenic |
| CATTGGATCTTAAGGATTAC+TGG | 0.283657 | 4.3:-6929880 | MS.gene000525:CDS |
| TTTGTTCCTTTATTTGATGC+TGG | 0.301136 | 4.3:+6930674 | None:intergenic |
| ACTCCAGTACACGTGCAAAC+TGG | 0.357093 | 4.3:+6930094 | None:intergenic |
| TTGTTCCTTTATTTGATGCT+GGG | 0.361945 | 4.3:+6930675 | None:intergenic |
| AAATGGGCGAGGATTTAAAT+AGG | 0.362648 | 4.3:-6930213 | MS.gene000525:CDS |
| GTAACGATTTGTTCCATGTC+TGG | 0.409057 | 4.3:+6929856 | None:intergenic |
| GTCCCAGTTTGCACGTGTAC+TGG | 0.410401 | 4.3:-6930097 | MS.gene000525:CDS |
| CGTTGAATTCCACCATTGAA+TGG | 0.413813 | 4.3:+6930424 | None:intergenic |
| CAGTACTATTCCGACTTTGA+AGG | 0.424329 | 4.3:+6930455 | None:intergenic |
| ATGCGAGCATGGCGCTTGTT+CGG | 0.428637 | 4.3:+6929983 | None:intergenic |
| TGCCTGCCTTTCAGCCATAA+TGG | 0.435049 | 4.3:+6930621 | None:intergenic |
| ACCACGACAGTGCTACAAAT+GGG | 0.437083 | 4.3:-6930071 | MS.gene000525:CDS |
| AAGCGCCATGCTCGCATTGG+AGG | 0.439433 | 4.3:-6929977 | MS.gene000525:CDS |
| GGATCCCCAGCATCAAATAA+AGG | 0.448615 | 4.3:-6930680 | MS.gene000525:CDS |
| GGATAATGCTCTACTGGAAC+GGG | 0.450868 | 4.3:-6930494 | MS.gene000525:CDS |
| CTCCAGTACACGTGCAAACT+GGG | 0.457013 | 4.3:+6930095 | None:intergenic |
| ACTGGCAACTTTCCATTCAA+TGG | 0.459914 | 4.3:-6930436 | MS.gene000525:CDS |
| ATCTGAAAAGAATGAAGCCC+TGG | 0.461756 | 4.3:-6930566 | MS.gene000525:CDS |
| GACAAAGATCAAATCTGAAT+GGG | 0.471460 | 4.3:-6930173 | MS.gene000525:CDS |
| GTGCTTCATCCCTCTGCCGA+AGG | 0.475401 | 4.3:+6930527 | None:intergenic |
| CAAATCTGAATGGGATAGGC+AGG | 0.475987 | 4.3:-6930164 | MS.gene000525:CDS |
| GTCCATTATGGCTGAAAGGC+AGG | 0.476045 | 4.3:-6930623 | MS.gene000525:CDS |
| CCATGATTTATCTATACCAT+TGG | 0.476445 | 4.3:-6929897 | MS.gene000525:CDS |
| GGACAAAGATCAAATCTGAA+TGG | 0.478623 | 4.3:-6930174 | MS.gene000525:CDS |
| TGGATATATGGTTTGAAGAA+TGG | 0.483617 | 4.3:+6930383 | None:intergenic |
| AACAAGCGCCATGCTCGCAT+TGG | 0.488361 | 4.3:-6929980 | MS.gene000525:CDS |
| TCCGCCCTCCAATGCGAGCA+TGG | 0.489587 | 4.3:+6929972 | None:intergenic |
| CCTACCAAAATAAAGAAAAT+GGG | 0.492634 | 4.3:-6930229 | MS.gene000525:CDS |
| TGAAGAATGGTGCATCCGCT+TGG | 0.493558 | 4.3:+6930396 | None:intergenic |
| TACCACGACAGTGCTACAAA+TGG | 0.496139 | 4.3:-6930072 | MS.gene000525:CDS |
| AATAGGAAGGCTTATTCTGA+AGG | 0.504268 | 4.3:-6930196 | MS.gene000525:CDS |
| CTCAGTAGGTTTGCATCAGA+AGG | 0.511971 | 4.3:-6929920 | MS.gene000525:CDS |
| TGAAAACGGTAGGCATAAGA+TGG | 0.514492 | 4.3:-6930832 | MS.gene000525:CDS |
| AGCGCCATGCTCGCATTGGA+GGG | 0.517752 | 4.3:-6929976 | MS.gene000525:CDS |
| TCAGAGGGATAATGCTCTAC+TGG | 0.518249 | 4.3:-6930500 | MS.gene000525:CDS |
| GGGCTACGTCTCGAGCAGCC+AGG | 0.518686 | 4.3:+6930548 | None:intergenic |
| CTTCAAAGTCGGAATAGTAC+TGG | 0.519466 | 4.3:-6930454 | MS.gene000525:CDS |
| TGTTCCTTTATTTGATGCTG+GGG | 0.520374 | 4.3:+6930676 | None:intergenic |
| AGTACTATTCCGACTTTGAA+GGG | 0.520694 | 4.3:+6930456 | None:intergenic |
| GGATGAAGCACTTGCTCAGA+GGG | 0.522036 | 4.3:-6930515 | MS.gene000525:CDS |
| ATATGCTGCTTCTGTCATGT+TGG | 0.532878 | 4.3:+6930363 | None:intergenic |
| AGATCAAATCTGAATGGGAT+AGG | 0.533258 | 4.3:-6930168 | MS.gene000525:CDS |
| TTGTTCGGAAGCTGTGGTAG+TGG | 0.541295 | 4.3:+6929998 | None:intergenic |
| CAAAATAAAGAAAATGGGCG+AGG | 0.545395 | 4.3:-6930224 | MS.gene000525:CDS |
| GAGACGTAGCCCTTCGGCAG+AGG | 0.546456 | 4.3:-6930537 | MS.gene000525:CDS |
| CCAATGGTATAGATAAATCA+TGG | 0.547636 | 4.3:+6929897 | None:intergenic |
| GGCTACGTCTCGAGCAGCCA+GGG | 0.552588 | 4.3:+6930549 | None:intergenic |
| CCCCATTTGTAGCACTGTCG+TGG | 0.555932 | 4.3:+6930070 | None:intergenic |
| CAGAAGTTATAACAGTAACT+GGG | 0.557616 | 4.3:+6930308 | None:intergenic |
| TTTAAATGTGCAGTGGAATG+TGG | 0.558628 | 4.3:-6930701 | MS.gene000525:intron |
| CTGCTCGAGACGTAGCCCTT+CGG | 0.563490 | 4.3:-6930543 | MS.gene000525:CDS |
| CTACAGAGGAGCACATTCCC+TGG | 0.565304 | 4.3:-6930805 | MS.gene000525:intron |
| AGACGTAGCCCTTCGGCAGA+GGG | 0.565616 | 4.3:-6930536 | MS.gene000525:CDS |
| GGGCGAGGATTTAAATAGGA+AGG | 0.570874 | 4.3:-6930209 | MS.gene000525:CDS |
| CTCTTGCAGCCCTTCAAAGT+CGG | 0.574408 | 4.3:-6930465 | MS.gene000525:CDS |
| AAGGATTACTGGGCCAGACA+TGG | 0.576589 | 4.3:-6929869 | MS.gene000525:CDS |
| GCCATGCTCGCATTGGAGGG+CGG | 0.577730 | 4.3:-6929973 | MS.gene000525:CDS |
| TGCTTCATCCCTCTGCCGAA+GGG | 0.577861 | 4.3:+6930528 | None:intergenic |
| GGGATAATGCTCTACTGGAA+CGG | 0.583003 | 4.3:-6930495 | MS.gene000525:CDS |
| GTACACGTGCAAACTGGGAC+AGG | 0.585669 | 4.3:+6930100 | None:intergenic |
| ATAGGAAGGCTTATTCTGAA+GGG | 0.587900 | 4.3:-6930195 | MS.gene000525:CDS |
| ATTGGATCTTAAGGATTACT+GGG | 0.588784 | 4.3:-6929879 | MS.gene000525:CDS |
| TCTTCTTGAACTTGAACTAG+AGG | 0.590105 | 4.3:-6930596 | MS.gene000525:CDS |
| TTAGGTCCATTATGGCTGAA+AGG | 0.590519 | 4.3:-6930627 | MS.gene000525:CDS |
| GATGACCGCCAATATGAAAA+CGG | 0.592001 | 4.3:-6930846 | MS.gene000525:CDS |
| GAATGGGATAGGCAGGATGT+TGG | 0.593838 | 4.3:-6930157 | MS.gene000525:CDS |
| CAGTAATCCTTAAGATCCAA+TGG | 0.595456 | 4.3:+6929881 | None:intergenic |
| GGCAACTTTCCATTCAATGG+TGG | 0.607937 | 4.3:-6930433 | MS.gene000525:CDS |
| TGGCGCTTGTTCGGAAGCTG+TGG | 0.609294 | 4.3:+6929992 | None:intergenic |
| CCACGACAGTGCTACAAATG+GGG | 0.618535 | 4.3:-6930070 | MS.gene000525:CDS |
| CATAAGATGGACTACTACAG+AGG | 0.628336 | 4.3:-6930819 | MS.gene000525:CDS |
| ATTGGAGGGCGGAAAATGAG+CGG | 0.633747 | 4.3:-6929962 | MS.gene000525:CDS |
| TCATCTAACTAAGAGAACAA+AGG | 0.650253 | 4.3:-6930272 | MS.gene000525:CDS |
| CACGACAGTGCTACAAATGG+GGG | 0.651085 | 4.3:-6930069 | MS.gene000525:CDS |
| ACCGCCAATATGAAAACGGT+AGG | 0.665966 | 4.3:-6930842 | MS.gene000525:CDS |
| GGGATGAAGCACTTGCTCAG+AGG | 0.669930 | 4.3:-6930516 | MS.gene000525:CDS |
| AGTTATAACAGTAACTGGGG+AGG | 0.670600 | 4.3:+6930312 | None:intergenic |
| AGAAGTTATAACAGTAACTG+GGG | 0.682187 | 4.3:+6930309 | None:intergenic |
| TGGATGCATTGACAATGTAG+TGG | 0.702687 | 4.3:+6930018 | None:intergenic |
| GAATTCAACGTGGATCCAAG+CGG | 0.708406 | 4.3:-6930411 | MS.gene000525:CDS |
| TTCAATGGTGGAATTCAACG+TGG | 0.712678 | 4.3:-6930421 | MS.gene000525:CDS |
| AGAAGCAGCATATAGCACGA+CGG | 0.752304 | 4.3:-6930353 | MS.gene000525:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGTTATGAATAAAAAAATT+AGG | - | chr4.3:6930048-6930067 | MS.gene000525:CDS | 10.0% |
| !!! | AATTTTTTTATTCATAACTA+GGG | + | chr4.3:6930048-6930067 | None:intergenic | 10.0% |
| !!! | TAATTTTTTTATTCATAACT+AGG | + | chr4.3:6930049-6930068 | None:intergenic | 10.0% |
| !! | TAAAAAAATTAGGTCCATTA+TGG | - | chr4.3:6930058-6930077 | MS.gene000525:CDS | 20.0% |
| ! | ACCTACCAAAATAAAGAAAA+TGG | - | chr4.3:6930463-6930482 | MS.gene000525:CDS | 25.0% |
| ! | CCTACCAAAATAAAGAAAAT+GGG | - | chr4.3:6930464-6930483 | MS.gene000525:CDS | 25.0% |
| AGAAGTTATAACAGTAACTG+GGG | + | chr4.3:6930387-6930406 | None:intergenic | 30.0% | |
| ATCTATACCATTGGATCTTA+AGG | - | chr4.3:6930805-6930824 | MS.gene000525:intron | 30.0% | |
| ATTGGATCTTAAGGATTACT+GGG | - | chr4.3:6930814-6930833 | MS.gene000525:CDS | 30.0% | |
| CAGAAGTTATAACAGTAACT+GGG | + | chr4.3:6930388-6930407 | None:intergenic | 30.0% | |
| CCAATGGTATAGATAAATCA+TGG | + | chr4.3:6930799-6930818 | None:intergenic | 30.0% | |
| CCATGATTTATCTATACCAT+TGG | - | chr4.3:6930796-6930815 | MS.gene000525:intron | 30.0% | |
| GACAAAGATCAAATCTGAAT+GGG | - | chr4.3:6930520-6930539 | MS.gene000525:CDS | 30.0% | |
| TCAGAAGTTATAACAGTAAC+TGG | + | chr4.3:6930389-6930408 | None:intergenic | 30.0% | |
| TCATCTAACTAAGAGAACAA+AGG | - | chr4.3:6930421-6930440 | MS.gene000525:CDS | 30.0% | |
| TGGATATATGGTTTGAAGAA+TGG | + | chr4.3:6930313-6930332 | None:intergenic | 30.0% | |
| ! | ATTGGATTTTAAATGTGCAG+TGG | - | chr4.3:6929985-6930004 | MS.gene000525:CDS | 30.0% |
| ! | TTGTTCCTTTATTTGATGCT+GGG | + | chr4.3:6930021-6930040 | None:intergenic | 30.0% |
| ! | TTTGTTCCTTTATTTGATGC+TGG | + | chr4.3:6930022-6930041 | None:intergenic | 30.0% |
| !! | ATTGGGTTGATTTATTGGAT+TGG | - | chr4.3:6929967-6929986 | MS.gene000525:CDS | 30.0% |
| !!! | CCCATTTTCTTTATTTTGGT+AGG | + | chr4.3:6930467-6930486 | None:intergenic | 30.0% |
| AAATGGGCGAGGATTTAAAT+AGG | - | chr4.3:6930480-6930499 | MS.gene000525:CDS | 35.0% | |
| AATAGGAAGGCTTATTCTGA+AGG | - | chr4.3:6930497-6930516 | MS.gene000525:CDS | 35.0% | |
| AGATCAAATCTGAATGGGAT+AGG | - | chr4.3:6930525-6930544 | MS.gene000525:CDS | 35.0% | |
| AGTACTATTCCGACTTTGAA+GGG | + | chr4.3:6930240-6930259 | None:intergenic | 35.0% | |
| ATAGGAAGGCTTATTCTGAA+GGG | - | chr4.3:6930498-6930517 | MS.gene000525:CDS | 35.0% | |
| ATATGTGCATTCTACTTACC+AGG | + | chr4.3:6929909-6929928 | None:intergenic | 35.0% | |
| CAAAATAAAGAAAATGGGCG+AGG | - | chr4.3:6930469-6930488 | MS.gene000525:CDS | 35.0% | |
| CAGTAATCCTTAAGATCCAA+TGG | + | chr4.3:6930815-6930834 | None:intergenic | 35.0% | |
| CATTGGATCTTAAGGATTAC+TGG | - | chr4.3:6930813-6930832 | MS.gene000525:CDS | 35.0% | |
| CTTCTGTCATGTTGGATATA+TGG | + | chr4.3:6930325-6930344 | None:intergenic | 35.0% | |
| GGACAAAGATCAAATCTGAA+TGG | - | chr4.3:6930519-6930538 | MS.gene000525:CDS | 35.0% | |
| TATGTGCATTCTACTTACCA+GGG | + | chr4.3:6929908-6929927 | None:intergenic | 35.0% | |
| TCTTCTTGAACTTGAACTAG+AGG | - | chr4.3:6930097-6930116 | MS.gene000525:CDS | 35.0% | |
| TTTAAATGTGCAGTGGAATG+TGG | - | chr4.3:6929992-6930011 | MS.gene000525:CDS | 35.0% | |
| ! | TAACTTGCAGTTGCACTATT+GGG | - | chr4.3:6929950-6929969 | MS.gene000525:CDS | 35.0% |
| ! | TATGCCTACCGTTTTCATAT+TGG | + | chr4.3:6929858-6929877 | None:intergenic | 35.0% |
| ! | TGTTCCTTTATTTGATGCTG+GGG | + | chr4.3:6930020-6930039 | None:intergenic | 35.0% |
| ! | TTTTTAGACGACTTCTCAGT+AGG | - | chr4.3:6930759-6930778 | MS.gene000525:intron | 35.0% |
| !! | CTCGCCCATTTTCTTTATTT+TGG | + | chr4.3:6930471-6930490 | None:intergenic | 35.0% |
| !! | GCACTATTGGGTTGATTTAT+TGG | - | chr4.3:6929962-6929981 | MS.gene000525:CDS | 35.0% |
| !! | TTAACTTGCAGTTGCACTAT+TGG | - | chr4.3:6929949-6929968 | MS.gene000525:CDS | 35.0% |
| ACTGGCAACTTTCCATTCAA+TGG | - | chr4.3:6930257-6930276 | MS.gene000525:CDS | 40.0% | |
| AGTTATAACAGTAACTGGGG+AGG | + | chr4.3:6930384-6930403 | None:intergenic | 40.0% | |
| ATCTGAAAAGAATGAAGCCC+TGG | - | chr4.3:6930127-6930146 | MS.gene000525:CDS | 40.0% | |
| CAGTACTATTCCGACTTTGA+AGG | + | chr4.3:6930241-6930260 | None:intergenic | 40.0% | |
| CGTTGAATTCCACCATTGAA+TGG | + | chr4.3:6930272-6930291 | None:intergenic | 40.0% | |
| CTTCAAAGTCGGAATAGTAC+TGG | - | chr4.3:6930239-6930258 | MS.gene000525:CDS | 40.0% | |
| GATGACCGCCAATATGAAAA+CGG | - | chr4.3:6929847-6929866 | MS.gene000525:CDS | 40.0% | |
| TGAAAACGGTAGGCATAAGA+TGG | - | chr4.3:6929861-6929880 | MS.gene000525:CDS | 40.0% | |
| TTAGGTCCATTATGGCTGAA+AGG | - | chr4.3:6930066-6930085 | MS.gene000525:CDS | 40.0% | |
| ! | ATATGCTGCTTCTGTCATGT+TGG | + | chr4.3:6930333-6930352 | None:intergenic | 40.0% |
| ! | GTAACGATTTGTTCCATGTC+TGG | + | chr4.3:6930840-6930859 | None:intergenic | 40.0% |
| ! | TGGATGCATTGACAATGTAG+TGG | + | chr4.3:6930678-6930697 | None:intergenic | 40.0% |
| ! | TTCAATGGTGGAATTCAACG+TGG | - | chr4.3:6930272-6930291 | MS.gene000525:CDS | 40.0% |
| !! | CATAAGATGGACTACTACAG+AGG | - | chr4.3:6929874-6929893 | MS.gene000525:CDS | 40.0% |
| ACCACGACAGTGCTACAAAT+GGG | - | chr4.3:6930622-6930641 | MS.gene000525:CDS | 45.0% | |
| ACCGCCAATATGAAAACGGT+AGG | - | chr4.3:6929851-6929870 | MS.gene000525:CDS | 45.0% | |
| AGAAGCAGCATATAGCACGA+CGG | - | chr4.3:6930340-6930359 | MS.gene000525:CDS | 45.0% | |
| CAAATCTGAATGGGATAGGC+AGG | - | chr4.3:6930529-6930548 | MS.gene000525:CDS | 45.0% | |
| CTCAGTAGGTTTGCATCAGA+AGG | - | chr4.3:6930773-6930792 | MS.gene000525:intron | 45.0% | |
| GAATTCAACGTGGATCCAAG+CGG | - | chr4.3:6930282-6930301 | MS.gene000525:CDS | 45.0% | |
| GGATAATGCTCTACTGGAAC+GGG | - | chr4.3:6930199-6930218 | MS.gene000525:CDS | 45.0% | |
| GGATCCCCAGCATCAAATAA+AGG | - | chr4.3:6930013-6930032 | MS.gene000525:CDS | 45.0% | |
| GGCAACTTTCCATTCAATGG+TGG | - | chr4.3:6930260-6930279 | MS.gene000525:CDS | 45.0% | |
| GGGATAATGCTCTACTGGAA+CGG | - | chr4.3:6930198-6930217 | MS.gene000525:CDS | 45.0% | |
| GGGCGAGGATTTAAATAGGA+AGG | - | chr4.3:6930484-6930503 | MS.gene000525:CDS | 45.0% | |
| TACCACGACAGTGCTACAAA+TGG | - | chr4.3:6930621-6930640 | MS.gene000525:CDS | 45.0% | |
| TCAGAGGGATAATGCTCTAC+TGG | - | chr4.3:6930193-6930212 | MS.gene000525:CDS | 45.0% | |
| ! | GCCTACCGTTTTCATATTGG+CGG | + | chr4.3:6929855-6929874 | None:intergenic | 45.0% |
| AAGGATTACTGGGCCAGACA+TGG | - | chr4.3:6930824-6930843 | MS.gene000525:CDS | 50.0% | |
| ACTCCAGTACACGTGCAAAC+TGG | + | chr4.3:6930602-6930621 | None:intergenic | 50.0% | |
| ATTGGAGGGCGGAAAATGAG+CGG | - | chr4.3:6930731-6930750 | MS.gene000525:intron | 50.0% | |
| CACGACAGTGCTACAAATGG+GGG | - | chr4.3:6930624-6930643 | MS.gene000525:CDS | 50.0% | |
| CAGTGCTACAAATGGGGGAA+TGG | - | chr4.3:6930629-6930648 | MS.gene000525:CDS | 50.0% | |
| CCACGACAGTGCTACAAATG+GGG | - | chr4.3:6930623-6930642 | MS.gene000525:CDS | 50.0% | |
| CTCCAGTACACGTGCAAACT+GGG | + | chr4.3:6930601-6930620 | None:intergenic | 50.0% | |
| CTCTTGCAGCCCTTCAAAGT+CGG | - | chr4.3:6930228-6930247 | MS.gene000525:CDS | 50.0% | |
| GAATGGGATAGGCAGGATGT+TGG | - | chr4.3:6930536-6930555 | MS.gene000525:CDS | 50.0% | |
| GTCCATTATGGCTGAAAGGC+AGG | - | chr4.3:6930070-6930089 | MS.gene000525:CDS | 50.0% | |
| TGAAGAATGGTGCATCCGCT+TGG | + | chr4.3:6930300-6930319 | None:intergenic | 50.0% | |
| TGCCTGCCTTTCAGCCATAA+TGG | + | chr4.3:6930075-6930094 | None:intergenic | 50.0% | |
| TGCTACAAATGGGGGAATGG+TGG | - | chr4.3:6930632-6930651 | MS.gene000525:CDS | 50.0% | |
| TTGTTCGGAAGCTGTGGTAG+TGG | + | chr4.3:6930698-6930717 | None:intergenic | 50.0% | |
| ! | ACAAATGGGGGAATGGTGGA+TGG | - | chr4.3:6930636-6930655 | MS.gene000525:CDS | 50.0% |
| ! | GGATGAAGCACTTGCTCAGA+GGG | - | chr4.3:6930178-6930197 | MS.gene000525:CDS | 50.0% |
| AACAAGCGCCATGCTCGCAT+TGG | - | chr4.3:6930713-6930732 | MS.gene000525:intron | 55.0% | |
| ATGCGAGCATGGCGCTTGTT+CGG | + | chr4.3:6930713-6930732 | None:intergenic | 55.0% | |
| CCCCATTTGTAGCACTGTCG+TGG | + | chr4.3:6930626-6930645 | None:intergenic | 55.0% | |
| GTACACGTGCAAACTGGGAC+AGG | + | chr4.3:6930596-6930615 | None:intergenic | 55.0% | |
| GTCCCAGTTTGCACGTGTAC+TGG | - | chr4.3:6930596-6930615 | MS.gene000525:CDS | 55.0% | |
| TGCTTCATCCCTCTGCCGAA+GGG | + | chr4.3:6930168-6930187 | None:intergenic | 55.0% | |
| ! | CTACAGAGGAGCACATTCCC+TGG | - | chr4.3:6929888-6929907 | MS.gene000525:CDS | 55.0% |
| ! | GGGATGAAGCACTTGCTCAG+AGG | - | chr4.3:6930177-6930196 | MS.gene000525:CDS | 55.0% |
| AAGCGCCATGCTCGCATTGG+AGG | - | chr4.3:6930716-6930735 | MS.gene000525:intron | 60.0% | |
| AGACGTAGCCCTTCGGCAGA+GGG | - | chr4.3:6930157-6930176 | MS.gene000525:CDS | 60.0% | |
| AGCGCCATGCTCGCATTGGA+GGG | - | chr4.3:6930717-6930736 | MS.gene000525:intron | 60.0% | |
| CTGCTCGAGACGTAGCCCTT+CGG | - | chr4.3:6930150-6930169 | MS.gene000525:CDS | 60.0% | |
| GTGCTTCATCCCTCTGCCGA+AGG | + | chr4.3:6930169-6930188 | None:intergenic | 60.0% | |
| TGGCGCTTGTTCGGAAGCTG+TGG | + | chr4.3:6930704-6930723 | None:intergenic | 60.0% | |
| GAGACGTAGCCCTTCGGCAG+AGG | - | chr4.3:6930156-6930175 | MS.gene000525:CDS | 65.0% | |
| GCCATGCTCGCATTGGAGGG+CGG | - | chr4.3:6930720-6930739 | MS.gene000525:intron | 65.0% | |
| GGCTACGTCTCGAGCAGCCA+GGG | + | chr4.3:6930147-6930166 | None:intergenic | 65.0% | |
| TCCGCCCTCCAATGCGAGCA+TGG | + | chr4.3:6930724-6930743 | None:intergenic | 65.0% | |
| GGGCTACGTCTCGAGCAGCC+AGG | + | chr4.3:6930148-6930167 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 6929841 | 6930874 | 6929841 | ID=MS.gene000525 |
| chr4.3 | mRNA | 6929841 | 6930874 | 6929841 | ID=MS.gene000525.t1;Parent=MS.gene000525 |
| chr4.3 | exon | 6930806 | 6930874 | 6930806 | ID=MS.gene000525.t1.exon1;Parent=MS.gene000525.t1 |
| chr4.3 | CDS | 6930806 | 6930874 | 6930806 | ID=cds.MS.gene000525.t1;Parent=MS.gene000525.t1 |
| chr4.3 | exon | 6929841 | 6930710 | 6929841 | ID=MS.gene000525.t1.exon2;Parent=MS.gene000525.t1 |
| chr4.3 | CDS | 6929841 | 6930710 | 6929841 | ID=cds.MS.gene000525.t1;Parent=MS.gene000525.t1 |
| Gene Sequence |
| Protein sequence |
