Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030481.t1 | XP_003630555.2 | 99 | 312 | 3 | 0 | 1 | 312 | 1 | 312 | 1.40E-150 | 542.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030481.t1 | Q8S8C6 | 60.2 | 314 | 105 | 5 | 1 | 312 | 1 | 296 | 1.9e-74 | 280.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030481.t1 | G7LI34 | 99.0 | 312 | 3 | 0 | 1 | 312 | 1 | 312 | 1.0e-150 | 542.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene030481.t1 | TF | BBR-BPC |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene64186 | MS.gene030481 | PPI |
| MS.gene24195 | MS.gene030481 | PPI |
| MS.gene27035 | MS.gene030481 | PPI |
| MS.gene63981 | MS.gene030481 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030481.t1 | MTR_8g099780 | 99.038 | 312 | 3 | 0 | 1 | 312 | 1 | 312 | 0.0 | 651 |
| MS.gene030481.t1 | MTR_1g023660 | 49.425 | 348 | 129 | 11 | 3 | 312 | 2 | 340 | 1.62e-105 | 311 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030481.t1 | AT2G21240 | 58.280 | 314 | 111 | 5 | 1 | 312 | 1 | 296 | 3.35e-127 | 365 |
| MS.gene030481.t1 | AT2G21240 | 58.280 | 314 | 111 | 5 | 1 | 312 | 1 | 296 | 3.35e-127 | 365 |
| MS.gene030481.t1 | AT4G38910 | 54.808 | 312 | 112 | 6 | 1 | 312 | 1 | 283 | 2.51e-114 | 332 |
| MS.gene030481.t1 | AT4G38910 | 56.228 | 281 | 96 | 5 | 33 | 312 | 4 | 258 | 4.28e-104 | 305 |
| MS.gene030481.t1 | AT5G42520 | 47.899 | 357 | 122 | 11 | 1 | 312 | 1 | 338 | 5.43e-91 | 275 |
| MS.gene030481.t1 | AT5G42520 | 47.899 | 357 | 126 | 12 | 1 | 312 | 1 | 342 | 7.82e-91 | 274 |
| MS.gene030481.t1 | AT5G42520 | 49.291 | 282 | 98 | 8 | 76 | 312 | 1 | 282 | 1.96e-77 | 238 |
| MS.gene030481.t1 | AT2G35550 | 45.806 | 155 | 77 | 1 | 165 | 312 | 72 | 226 | 4.76e-46 | 155 |
| MS.gene030481.t1 | AT2G35550 | 45.806 | 155 | 77 | 1 | 165 | 312 | 72 | 226 | 4.76e-46 | 155 |
| MS.gene030481.t1 | AT2G35550 | 45.806 | 155 | 77 | 1 | 165 | 312 | 72 | 226 | 4.76e-46 | 155 |
| MS.gene030481.t1 | AT2G35550 | 45.806 | 155 | 77 | 1 | 165 | 312 | 117 | 271 | 7.28e-46 | 156 |
| MS.gene030481.t1 | AT1G14685 | 52.137 | 117 | 56 | 0 | 196 | 312 | 163 | 279 | 3.96e-44 | 152 |
| MS.gene030481.t1 | AT1G14685 | 52.137 | 117 | 56 | 0 | 196 | 312 | 163 | 279 | 3.96e-44 | 152 |
| MS.gene030481.t1 | AT1G14685 | 52.137 | 117 | 56 | 0 | 196 | 312 | 163 | 279 | 3.96e-44 | 152 |
| MS.gene030481.t1 | AT1G14685 | 52.137 | 117 | 56 | 0 | 196 | 312 | 163 | 279 | 3.96e-44 | 152 |
| MS.gene030481.t1 | AT1G68120 | 55.769 | 104 | 46 | 0 | 209 | 312 | 166 | 269 | 1.17e-41 | 145 |
| MS.gene030481.t1 | AT2G01930 | 41.830 | 153 | 83 | 1 | 166 | 312 | 131 | 283 | 3.75e-41 | 144 |
| MS.gene030481.t1 | AT2G01930 | 41.830 | 153 | 83 | 1 | 166 | 312 | 131 | 283 | 3.75e-41 | 144 |
Find 86 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTACCAAAATAAAGAAAA+TGG | 0.208626 | 4.2:-7366065 | MS.gene030481:CDS |
| CTTCTGTCATGTTGGATATA+TGG | 0.216505 | 4.2:+7366206 | None:intergenic |
| ATCTATACCATTGGATCTTA+AGG | 0.242442 | 4.2:-7365723 | MS.gene030481:CDS |
| TCAGAAGTTATAACAGTAAC+TGG | 0.272157 | 4.2:+7366142 | None:intergenic |
| CATTGGATCTTAAGGATTAC+TGG | 0.283657 | 4.2:-7365715 | MS.gene030481:CDS |
| TTTGTTCCTTTATTTGATGC+TGG | 0.301136 | 4.2:+7366509 | None:intergenic |
| ACTCCAGTACACGTGCAAAC+TGG | 0.357093 | 4.2:+7365929 | None:intergenic |
| TTGTTCCTTTATTTGATGCT+GGG | 0.361945 | 4.2:+7366510 | None:intergenic |
| AAATGGGCGAGGATTTAAAT+AGG | 0.362648 | 4.2:-7366048 | MS.gene030481:CDS |
| GTAACGATTTGTTCCATGTC+TGG | 0.409057 | 4.2:+7365691 | None:intergenic |
| GTCCCAGTTTGCACGTGTAC+TGG | 0.410401 | 4.2:-7365932 | MS.gene030481:CDS |
| TCATCTAACTAAGAGAATAA+AGG | 0.412472 | 4.2:-7366107 | MS.gene030481:CDS |
| CGTTGAATTCCACCATTGAA+TGG | 0.413813 | 4.2:+7366259 | None:intergenic |
| CAGTACTATTCCGACTTTGA+AGG | 0.424329 | 4.2:+7366290 | None:intergenic |
| ATGCGAGCATGGCGCTTGTT+CGG | 0.428637 | 4.2:+7365818 | None:intergenic |
| TGCCTGCCTTTCAGCCATAA+TGG | 0.435049 | 4.2:+7366456 | None:intergenic |
| ACCACGACAGTGCTACAAAT+GGG | 0.437083 | 4.2:-7365906 | MS.gene030481:CDS |
| AAGCGCCATGCTCGCATTGG+AGG | 0.439433 | 4.2:-7365812 | MS.gene030481:CDS |
| GGATCCCCAGCATCAAATAA+AGG | 0.448615 | 4.2:-7366515 | MS.gene030481:CDS |
| GGATAATGCTCTACTGGAAC+GGG | 0.450868 | 4.2:-7366329 | MS.gene030481:CDS |
| CTCCAGTACACGTGCAAACT+GGG | 0.457013 | 4.2:+7365930 | None:intergenic |
| ACTGGCAACTTTCCATTCAA+TGG | 0.459914 | 4.2:-7366271 | MS.gene030481:CDS |
| ATCTGAAAAGAATGAAGCCC+TGG | 0.461756 | 4.2:-7366401 | MS.gene030481:CDS |
| GACAAAGATCAAATCTGAAT+GGG | 0.471460 | 4.2:-7366008 | MS.gene030481:CDS |
| GTGCTTCATCCCTCTGCCGA+AGG | 0.475401 | 4.2:+7366362 | None:intergenic |
| CAAATCTGAATGGGATAGGC+AGG | 0.475987 | 4.2:-7365999 | MS.gene030481:CDS |
| GTCCATTATGGCTGAAAGGC+AGG | 0.476045 | 4.2:-7366458 | MS.gene030481:CDS |
| CCATGATTTATCTATACCAT+TGG | 0.476445 | 4.2:-7365732 | MS.gene030481:CDS |
| GGACAAAGATCAAATCTGAA+TGG | 0.478623 | 4.2:-7366009 | MS.gene030481:CDS |
| TGGATATATGGTTTGAAGAA+TGG | 0.483617 | 4.2:+7366218 | None:intergenic |
| AACAAGCGCCATGCTCGCAT+TGG | 0.488361 | 4.2:-7365815 | MS.gene030481:CDS |
| TCCGCCCTCCAATGCGAGCA+TGG | 0.489587 | 4.2:+7365807 | None:intergenic |
| CCTACCAAAATAAAGAAAAT+GGG | 0.492634 | 4.2:-7366064 | MS.gene030481:CDS |
| TGAAGAATGGTGCATCCGCT+TGG | 0.493558 | 4.2:+7366231 | None:intergenic |
| TACCACGACAGTGCTACAAA+TGG | 0.496139 | 4.2:-7365907 | MS.gene030481:CDS |
| AATAGGAAGGCTTATTCTGA+AGG | 0.504268 | 4.2:-7366031 | MS.gene030481:CDS |
| CTCAGTAGGTTTGCATCAGA+AGG | 0.511971 | 4.2:-7365755 | MS.gene030481:CDS |
| TGAAAACGGTAGGCATAAGA+TGG | 0.514492 | 4.2:-7366667 | MS.gene030481:CDS |
| AGCGCCATGCTCGCATTGGA+GGG | 0.517752 | 4.2:-7365811 | MS.gene030481:CDS |
| TCAGAGGGATAATGCTCTAC+TGG | 0.518249 | 4.2:-7366335 | MS.gene030481:CDS |
| GGGCTACGTCTCGAGCAGCC+AGG | 0.518686 | 4.2:+7366383 | None:intergenic |
| CTTCAAAGTCGGAATAGTAC+TGG | 0.519466 | 4.2:-7366289 | MS.gene030481:CDS |
| TGTTCCTTTATTTGATGCTG+GGG | 0.520374 | 4.2:+7366511 | None:intergenic |
| AGTACTATTCCGACTTTGAA+GGG | 0.520694 | 4.2:+7366291 | None:intergenic |
| GGATGAAGCACTTGCTCAGA+GGG | 0.522036 | 4.2:-7366350 | MS.gene030481:CDS |
| ATATGCTGCTTCTGTCATGT+TGG | 0.532878 | 4.2:+7366198 | None:intergenic |
| AGATCAAATCTGAATGGGAT+AGG | 0.533258 | 4.2:-7366003 | MS.gene030481:CDS |
| TTGTTCGGAAGCTGTGGTAG+TGG | 0.541295 | 4.2:+7365833 | None:intergenic |
| CAAAATAAAGAAAATGGGCG+AGG | 0.545395 | 4.2:-7366059 | MS.gene030481:CDS |
| GAGACGTAGCCCTTCGGCAG+AGG | 0.546456 | 4.2:-7366372 | MS.gene030481:CDS |
| CCAATGGTATAGATAAATCA+TGG | 0.547636 | 4.2:+7365732 | None:intergenic |
| GGCTACGTCTCGAGCAGCCA+GGG | 0.552588 | 4.2:+7366384 | None:intergenic |
| CCCCATTTGTAGCACTGTCG+TGG | 0.555932 | 4.2:+7365905 | None:intergenic |
| CAGAAGTTATAACAGTAACT+GGG | 0.557616 | 4.2:+7366143 | None:intergenic |
| TTTAAATGTGCAGTGGAATG+TGG | 0.558628 | 4.2:-7366536 | MS.gene030481:intron |
| CTGCTCGAGACGTAGCCCTT+CGG | 0.563490 | 4.2:-7366378 | MS.gene030481:CDS |
| CTACAGAGGAGCACATTCCC+TGG | 0.565304 | 4.2:-7366640 | MS.gene030481:intron |
| AGACGTAGCCCTTCGGCAGA+GGG | 0.565616 | 4.2:-7366371 | MS.gene030481:CDS |
| GGGCGAGGATTTAAATAGGA+AGG | 0.570874 | 4.2:-7366044 | MS.gene030481:CDS |
| CTCTTGCAGCCCTTCAAAGT+CGG | 0.574408 | 4.2:-7366300 | MS.gene030481:CDS |
| AAGGATTACTGGGCCAGACA+TGG | 0.576589 | 4.2:-7365704 | MS.gene030481:CDS |
| GCCATGCTCGCATTGGAGGG+CGG | 0.577730 | 4.2:-7365808 | MS.gene030481:CDS |
| TGCTTCATCCCTCTGCCGAA+GGG | 0.577861 | 4.2:+7366363 | None:intergenic |
| GGGATAATGCTCTACTGGAA+CGG | 0.583003 | 4.2:-7366330 | MS.gene030481:CDS |
| GTACACGTGCAAACTGGGAC+AGG | 0.585669 | 4.2:+7365935 | None:intergenic |
| ATAGGAAGGCTTATTCTGAA+GGG | 0.587900 | 4.2:-7366030 | MS.gene030481:CDS |
| ATTGGATCTTAAGGATTACT+GGG | 0.588784 | 4.2:-7365714 | MS.gene030481:CDS |
| TCTTCTTGAACTTGAACTAG+AGG | 0.590105 | 4.2:-7366431 | MS.gene030481:CDS |
| TTAGGTCCATTATGGCTGAA+AGG | 0.590519 | 4.2:-7366462 | MS.gene030481:CDS |
| GATGACCGCCAATATGAAAA+CGG | 0.592001 | 4.2:-7366681 | MS.gene030481:CDS |
| GAATGGGATAGGCAGGATGT+TGG | 0.593838 | 4.2:-7365992 | MS.gene030481:CDS |
| CAGTAATCCTTAAGATCCAA+TGG | 0.595456 | 4.2:+7365716 | None:intergenic |
| GGCAACTTTCCATTCAATGG+TGG | 0.607937 | 4.2:-7366268 | MS.gene030481:CDS |
| TGGCGCTTGTTCGGAAGCTG+TGG | 0.609294 | 4.2:+7365827 | None:intergenic |
| CCACGACAGTGCTACAAATG+GGG | 0.618535 | 4.2:-7365905 | MS.gene030481:CDS |
| CATAAGATGGACTACTACAG+AGG | 0.628336 | 4.2:-7366654 | MS.gene030481:CDS |
| ATTGGAGGGCGGAAAATGAG+CGG | 0.633747 | 4.2:-7365797 | MS.gene030481:CDS |
| CACGACAGTGCTACAAATGG+GGG | 0.651085 | 4.2:-7365904 | MS.gene030481:CDS |
| ACCGCCAATATGAAAACGGT+AGG | 0.665966 | 4.2:-7366677 | MS.gene030481:CDS |
| GGGATGAAGCACTTGCTCAG+AGG | 0.669930 | 4.2:-7366351 | MS.gene030481:CDS |
| AGTTATAACAGTAACTGGGG+AGG | 0.670600 | 4.2:+7366147 | None:intergenic |
| AGAAGTTATAACAGTAACTG+GGG | 0.682187 | 4.2:+7366144 | None:intergenic |
| TGGATGCATTGACAATGTAG+TGG | 0.702687 | 4.2:+7365853 | None:intergenic |
| GAATTCAACGTGGATCCAAG+CGG | 0.708406 | 4.2:-7366246 | MS.gene030481:CDS |
| TTCAATGGTGGAATTCAACG+TGG | 0.712678 | 4.2:-7366256 | MS.gene030481:CDS |
| AGAAGCAGCATATAGCACGA+CGG | 0.752304 | 4.2:-7366188 | MS.gene030481:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGTTATGAATAAAAAAATT+AGG | - | chr4.2:7365883-7365902 | MS.gene030481:CDS | 10.0% |
| !!! | AATTTTTTTATTCATAACTA+GGG | + | chr4.2:7365883-7365902 | None:intergenic | 10.0% |
| !!! | TAATTTTTTTATTCATAACT+AGG | + | chr4.2:7365884-7365903 | None:intergenic | 10.0% |
| !! | TAAAAAAATTAGGTCCATTA+TGG | - | chr4.2:7365893-7365912 | MS.gene030481:CDS | 20.0% |
| ! | ACCTACCAAAATAAAGAAAA+TGG | - | chr4.2:7366298-7366317 | MS.gene030481:CDS | 25.0% |
| ! | CCTACCAAAATAAAGAAAAT+GGG | - | chr4.2:7366299-7366318 | MS.gene030481:CDS | 25.0% |
| ! | TCATCTAACTAAGAGAATAA+AGG | - | chr4.2:7366256-7366275 | MS.gene030481:CDS | 25.0% |
| AGAAGTTATAACAGTAACTG+GGG | + | chr4.2:7366222-7366241 | None:intergenic | 30.0% | |
| ATCTATACCATTGGATCTTA+AGG | - | chr4.2:7366640-7366659 | MS.gene030481:intron | 30.0% | |
| ATTGGATCTTAAGGATTACT+GGG | - | chr4.2:7366649-7366668 | MS.gene030481:CDS | 30.0% | |
| CAGAAGTTATAACAGTAACT+GGG | + | chr4.2:7366223-7366242 | None:intergenic | 30.0% | |
| CCAATGGTATAGATAAATCA+TGG | + | chr4.2:7366634-7366653 | None:intergenic | 30.0% | |
| CCATGATTTATCTATACCAT+TGG | - | chr4.2:7366631-7366650 | MS.gene030481:intron | 30.0% | |
| GACAAAGATCAAATCTGAAT+GGG | - | chr4.2:7366355-7366374 | MS.gene030481:CDS | 30.0% | |
| TCAGAAGTTATAACAGTAAC+TGG | + | chr4.2:7366224-7366243 | None:intergenic | 30.0% | |
| TGGATATATGGTTTGAAGAA+TGG | + | chr4.2:7366148-7366167 | None:intergenic | 30.0% | |
| ! | ATTGGATTTTAAATGTGCAG+TGG | - | chr4.2:7365820-7365839 | MS.gene030481:CDS | 30.0% |
| ! | TTGTTCCTTTATTTGATGCT+GGG | + | chr4.2:7365856-7365875 | None:intergenic | 30.0% |
| ! | TTTGTTCCTTTATTTGATGC+TGG | + | chr4.2:7365857-7365876 | None:intergenic | 30.0% |
| !! | ATTGGGTTGATTTATTGGAT+TGG | - | chr4.2:7365802-7365821 | MS.gene030481:CDS | 30.0% |
| !!! | CCCATTTTCTTTATTTTGGT+AGG | + | chr4.2:7366302-7366321 | None:intergenic | 30.0% |
| AAATGGGCGAGGATTTAAAT+AGG | - | chr4.2:7366315-7366334 | MS.gene030481:CDS | 35.0% | |
| AATAGGAAGGCTTATTCTGA+AGG | - | chr4.2:7366332-7366351 | MS.gene030481:CDS | 35.0% | |
| AGATCAAATCTGAATGGGAT+AGG | - | chr4.2:7366360-7366379 | MS.gene030481:CDS | 35.0% | |
| AGTACTATTCCGACTTTGAA+GGG | + | chr4.2:7366075-7366094 | None:intergenic | 35.0% | |
| ATAGGAAGGCTTATTCTGAA+GGG | - | chr4.2:7366333-7366352 | MS.gene030481:CDS | 35.0% | |
| ATATGTGCATTCTACTTACC+AGG | + | chr4.2:7365744-7365763 | None:intergenic | 35.0% | |
| CAAAATAAAGAAAATGGGCG+AGG | - | chr4.2:7366304-7366323 | MS.gene030481:CDS | 35.0% | |
| CAGTAATCCTTAAGATCCAA+TGG | + | chr4.2:7366650-7366669 | None:intergenic | 35.0% | |
| CATTGGATCTTAAGGATTAC+TGG | - | chr4.2:7366648-7366667 | MS.gene030481:CDS | 35.0% | |
| CTTCTGTCATGTTGGATATA+TGG | + | chr4.2:7366160-7366179 | None:intergenic | 35.0% | |
| GGACAAAGATCAAATCTGAA+TGG | - | chr4.2:7366354-7366373 | MS.gene030481:CDS | 35.0% | |
| TATGTGCATTCTACTTACCA+GGG | + | chr4.2:7365743-7365762 | None:intergenic | 35.0% | |
| TCTTCTTGAACTTGAACTAG+AGG | - | chr4.2:7365932-7365951 | MS.gene030481:CDS | 35.0% | |
| TTTAAATGTGCAGTGGAATG+TGG | - | chr4.2:7365827-7365846 | MS.gene030481:CDS | 35.0% | |
| ! | TAACTTGCAGTTGCACTATT+GGG | - | chr4.2:7365785-7365804 | MS.gene030481:CDS | 35.0% |
| ! | TATGCCTACCGTTTTCATAT+TGG | + | chr4.2:7365693-7365712 | None:intergenic | 35.0% |
| ! | TGTTCCTTTATTTGATGCTG+GGG | + | chr4.2:7365855-7365874 | None:intergenic | 35.0% |
| ! | TTTTTAGACGACTTCTCAGT+AGG | - | chr4.2:7366594-7366613 | MS.gene030481:intron | 35.0% |
| !! | CTCGCCCATTTTCTTTATTT+TGG | + | chr4.2:7366306-7366325 | None:intergenic | 35.0% |
| !! | GCACTATTGGGTTGATTTAT+TGG | - | chr4.2:7365797-7365816 | MS.gene030481:CDS | 35.0% |
| !! | TTAACTTGCAGTTGCACTAT+TGG | - | chr4.2:7365784-7365803 | MS.gene030481:CDS | 35.0% |
| ACTGGCAACTTTCCATTCAA+TGG | - | chr4.2:7366092-7366111 | MS.gene030481:CDS | 40.0% | |
| AGTTATAACAGTAACTGGGG+AGG | + | chr4.2:7366219-7366238 | None:intergenic | 40.0% | |
| ATCTGAAAAGAATGAAGCCC+TGG | - | chr4.2:7365962-7365981 | MS.gene030481:CDS | 40.0% | |
| CAGTACTATTCCGACTTTGA+AGG | + | chr4.2:7366076-7366095 | None:intergenic | 40.0% | |
| CGTTGAATTCCACCATTGAA+TGG | + | chr4.2:7366107-7366126 | None:intergenic | 40.0% | |
| CTTCAAAGTCGGAATAGTAC+TGG | - | chr4.2:7366074-7366093 | MS.gene030481:CDS | 40.0% | |
| GATGACCGCCAATATGAAAA+CGG | - | chr4.2:7365682-7365701 | MS.gene030481:CDS | 40.0% | |
| TGAAAACGGTAGGCATAAGA+TGG | - | chr4.2:7365696-7365715 | MS.gene030481:CDS | 40.0% | |
| TTAGGTCCATTATGGCTGAA+AGG | - | chr4.2:7365901-7365920 | MS.gene030481:CDS | 40.0% | |
| ! | ATATGCTGCTTCTGTCATGT+TGG | + | chr4.2:7366168-7366187 | None:intergenic | 40.0% |
| ! | GTAACGATTTGTTCCATGTC+TGG | + | chr4.2:7366675-7366694 | None:intergenic | 40.0% |
| ! | TGGATGCATTGACAATGTAG+TGG | + | chr4.2:7366513-7366532 | None:intergenic | 40.0% |
| ! | TTCAATGGTGGAATTCAACG+TGG | - | chr4.2:7366107-7366126 | MS.gene030481:CDS | 40.0% |
| !! | CATAAGATGGACTACTACAG+AGG | - | chr4.2:7365709-7365728 | MS.gene030481:CDS | 40.0% |
| ACCACGACAGTGCTACAAAT+GGG | - | chr4.2:7366457-7366476 | MS.gene030481:CDS | 45.0% | |
| ACCGCCAATATGAAAACGGT+AGG | - | chr4.2:7365686-7365705 | MS.gene030481:CDS | 45.0% | |
| AGAAGCAGCATATAGCACGA+CGG | - | chr4.2:7366175-7366194 | MS.gene030481:CDS | 45.0% | |
| CAAATCTGAATGGGATAGGC+AGG | - | chr4.2:7366364-7366383 | MS.gene030481:CDS | 45.0% | |
| CTCAGTAGGTTTGCATCAGA+AGG | - | chr4.2:7366608-7366627 | MS.gene030481:intron | 45.0% | |
| GAATTCAACGTGGATCCAAG+CGG | - | chr4.2:7366117-7366136 | MS.gene030481:CDS | 45.0% | |
| GGATAATGCTCTACTGGAAC+GGG | - | chr4.2:7366034-7366053 | MS.gene030481:CDS | 45.0% | |
| GGATCCCCAGCATCAAATAA+AGG | - | chr4.2:7365848-7365867 | MS.gene030481:CDS | 45.0% | |
| GGCAACTTTCCATTCAATGG+TGG | - | chr4.2:7366095-7366114 | MS.gene030481:CDS | 45.0% | |
| GGGATAATGCTCTACTGGAA+CGG | - | chr4.2:7366033-7366052 | MS.gene030481:CDS | 45.0% | |
| GGGCGAGGATTTAAATAGGA+AGG | - | chr4.2:7366319-7366338 | MS.gene030481:CDS | 45.0% | |
| TACCACGACAGTGCTACAAA+TGG | - | chr4.2:7366456-7366475 | MS.gene030481:CDS | 45.0% | |
| TCAGAGGGATAATGCTCTAC+TGG | - | chr4.2:7366028-7366047 | MS.gene030481:CDS | 45.0% | |
| ! | GCCTACCGTTTTCATATTGG+CGG | + | chr4.2:7365690-7365709 | None:intergenic | 45.0% |
| AAGGATTACTGGGCCAGACA+TGG | - | chr4.2:7366659-7366678 | MS.gene030481:CDS | 50.0% | |
| ACTCCAGTACACGTGCAAAC+TGG | + | chr4.2:7366437-7366456 | None:intergenic | 50.0% | |
| ATTGGAGGGCGGAAAATGAG+CGG | - | chr4.2:7366566-7366585 | MS.gene030481:intron | 50.0% | |
| CACGACAGTGCTACAAATGG+GGG | - | chr4.2:7366459-7366478 | MS.gene030481:CDS | 50.0% | |
| CAGTGCTACAAATGGGGGAA+TGG | - | chr4.2:7366464-7366483 | MS.gene030481:CDS | 50.0% | |
| CCACGACAGTGCTACAAATG+GGG | - | chr4.2:7366458-7366477 | MS.gene030481:CDS | 50.0% | |
| CTCCAGTACACGTGCAAACT+GGG | + | chr4.2:7366436-7366455 | None:intergenic | 50.0% | |
| CTCTTGCAGCCCTTCAAAGT+CGG | - | chr4.2:7366063-7366082 | MS.gene030481:CDS | 50.0% | |
| GAATGGGATAGGCAGGATGT+TGG | - | chr4.2:7366371-7366390 | MS.gene030481:CDS | 50.0% | |
| GTCCATTATGGCTGAAAGGC+AGG | - | chr4.2:7365905-7365924 | MS.gene030481:CDS | 50.0% | |
| TGAAGAATGGTGCATCCGCT+TGG | + | chr4.2:7366135-7366154 | None:intergenic | 50.0% | |
| TGCCTGCCTTTCAGCCATAA+TGG | + | chr4.2:7365910-7365929 | None:intergenic | 50.0% | |
| TGCTACAAATGGGGGAATGG+TGG | - | chr4.2:7366467-7366486 | MS.gene030481:CDS | 50.0% | |
| TTGTTCGGAAGCTGTGGTAG+TGG | + | chr4.2:7366533-7366552 | None:intergenic | 50.0% | |
| ! | ACAAATGGGGGAATGGTGGA+TGG | - | chr4.2:7366471-7366490 | MS.gene030481:CDS | 50.0% |
| ! | GGATGAAGCACTTGCTCAGA+GGG | - | chr4.2:7366013-7366032 | MS.gene030481:CDS | 50.0% |
| AACAAGCGCCATGCTCGCAT+TGG | - | chr4.2:7366548-7366567 | MS.gene030481:intron | 55.0% | |
| ATGCGAGCATGGCGCTTGTT+CGG | + | chr4.2:7366548-7366567 | None:intergenic | 55.0% | |
| CCCCATTTGTAGCACTGTCG+TGG | + | chr4.2:7366461-7366480 | None:intergenic | 55.0% | |
| GTACACGTGCAAACTGGGAC+AGG | + | chr4.2:7366431-7366450 | None:intergenic | 55.0% | |
| GTCCCAGTTTGCACGTGTAC+TGG | - | chr4.2:7366431-7366450 | MS.gene030481:CDS | 55.0% | |
| TGCTTCATCCCTCTGCCGAA+GGG | + | chr4.2:7366003-7366022 | None:intergenic | 55.0% | |
| ! | CTACAGAGGAGCACATTCCC+TGG | - | chr4.2:7365723-7365742 | MS.gene030481:CDS | 55.0% |
| ! | GGGATGAAGCACTTGCTCAG+AGG | - | chr4.2:7366012-7366031 | MS.gene030481:CDS | 55.0% |
| AAGCGCCATGCTCGCATTGG+AGG | - | chr4.2:7366551-7366570 | MS.gene030481:intron | 60.0% | |
| AGACGTAGCCCTTCGGCAGA+GGG | - | chr4.2:7365992-7366011 | MS.gene030481:CDS | 60.0% | |
| AGCGCCATGCTCGCATTGGA+GGG | - | chr4.2:7366552-7366571 | MS.gene030481:intron | 60.0% | |
| CTGCTCGAGACGTAGCCCTT+CGG | - | chr4.2:7365985-7366004 | MS.gene030481:CDS | 60.0% | |
| GTGCTTCATCCCTCTGCCGA+AGG | + | chr4.2:7366004-7366023 | None:intergenic | 60.0% | |
| TGGCGCTTGTTCGGAAGCTG+TGG | + | chr4.2:7366539-7366558 | None:intergenic | 60.0% | |
| GAGACGTAGCCCTTCGGCAG+AGG | - | chr4.2:7365991-7366010 | MS.gene030481:CDS | 65.0% | |
| GCCATGCTCGCATTGGAGGG+CGG | - | chr4.2:7366555-7366574 | MS.gene030481:intron | 65.0% | |
| GGCTACGTCTCGAGCAGCCA+GGG | + | chr4.2:7365982-7366001 | None:intergenic | 65.0% | |
| TCCGCCCTCCAATGCGAGCA+TGG | + | chr4.2:7366559-7366578 | None:intergenic | 65.0% | |
| GGGCTACGTCTCGAGCAGCC+AGG | + | chr4.2:7365983-7366002 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 7365676 | 7366709 | 7365676 | ID=MS.gene030481 |
| chr4.2 | mRNA | 7365676 | 7366709 | 7365676 | ID=MS.gene030481.t1;Parent=MS.gene030481 |
| chr4.2 | exon | 7366641 | 7366709 | 7366641 | ID=MS.gene030481.t1.exon1;Parent=MS.gene030481.t1 |
| chr4.2 | CDS | 7366641 | 7366709 | 7366641 | ID=cds.MS.gene030481.t1;Parent=MS.gene030481.t1 |
| chr4.2 | exon | 7365676 | 7366545 | 7365676 | ID=MS.gene030481.t1.exon2;Parent=MS.gene030481.t1 |
| chr4.2 | CDS | 7365676 | 7366545 | 7365676 | ID=cds.MS.gene030481.t1;Parent=MS.gene030481.t1 |
| Gene Sequence |
| Protein sequence |
