Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79458.t1 | XP_003630555.2 | 99.4 | 312 | 2 | 0 | 1 | 312 | 1 | 312 | 6.40E-151 | 543.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79458.t1 | Q8S8C6 | 60.2 | 314 | 105 | 5 | 1 | 312 | 1 | 296 | 1.9e-74 | 280.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79458.t1 | G7LI34 | 99.4 | 312 | 2 | 0 | 1 | 312 | 1 | 312 | 4.6e-151 | 543.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene79458.t1 | TF | BBR-BPC |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene27035 | MS.gene79458 | PPI |
| MS.gene63981 | MS.gene79458 | PPI |
| MS.gene79458 | MS.gene24195 | PPI |
| MS.gene79458 | MS.gene64186 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79458.t1 | MTR_8g099780 | 99.359 | 312 | 2 | 0 | 1 | 312 | 1 | 312 | 0.0 | 653 |
| MS.gene79458.t1 | MTR_1g023660 | 49.425 | 348 | 129 | 11 | 3 | 312 | 2 | 340 | 1.12e-105 | 312 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79458.t1 | AT2G21240 | 58.280 | 314 | 111 | 5 | 1 | 312 | 1 | 296 | 1.46e-127 | 366 |
| MS.gene79458.t1 | AT2G21240 | 58.280 | 314 | 111 | 5 | 1 | 312 | 1 | 296 | 1.46e-127 | 366 |
| MS.gene79458.t1 | AT4G38910 | 54.808 | 312 | 112 | 6 | 1 | 312 | 1 | 283 | 1.60e-114 | 332 |
| MS.gene79458.t1 | AT4G38910 | 56.228 | 281 | 96 | 5 | 33 | 312 | 4 | 258 | 2.83e-104 | 305 |
| MS.gene79458.t1 | AT5G42520 | 47.899 | 357 | 122 | 11 | 1 | 312 | 1 | 338 | 1.76e-90 | 273 |
| MS.gene79458.t1 | AT5G42520 | 47.899 | 357 | 126 | 12 | 1 | 312 | 1 | 342 | 2.79e-90 | 273 |
| MS.gene79458.t1 | AT5G42520 | 49.291 | 282 | 98 | 8 | 76 | 312 | 1 | 282 | 8.23e-77 | 236 |
| MS.gene79458.t1 | AT2G35550 | 45.806 | 155 | 77 | 1 | 165 | 312 | 72 | 226 | 1.55e-45 | 154 |
| MS.gene79458.t1 | AT2G35550 | 45.806 | 155 | 77 | 1 | 165 | 312 | 72 | 226 | 1.55e-45 | 154 |
| MS.gene79458.t1 | AT2G35550 | 45.806 | 155 | 77 | 1 | 165 | 312 | 72 | 226 | 1.55e-45 | 154 |
| MS.gene79458.t1 | AT2G35550 | 45.806 | 155 | 77 | 1 | 165 | 312 | 117 | 271 | 2.43e-45 | 155 |
| MS.gene79458.t1 | AT1G14685 | 52.137 | 117 | 56 | 0 | 196 | 312 | 163 | 279 | 3.34e-44 | 152 |
| MS.gene79458.t1 | AT1G14685 | 52.137 | 117 | 56 | 0 | 196 | 312 | 163 | 279 | 3.34e-44 | 152 |
| MS.gene79458.t1 | AT1G14685 | 52.137 | 117 | 56 | 0 | 196 | 312 | 163 | 279 | 3.34e-44 | 152 |
| MS.gene79458.t1 | AT1G14685 | 52.137 | 117 | 56 | 0 | 196 | 312 | 163 | 279 | 3.34e-44 | 152 |
| MS.gene79458.t1 | AT1G68120 | 55.769 | 104 | 46 | 0 | 209 | 312 | 166 | 269 | 1.15e-41 | 145 |
| MS.gene79458.t1 | AT2G01930 | 52.336 | 107 | 51 | 0 | 206 | 312 | 177 | 283 | 6.65e-41 | 144 |
| MS.gene79458.t1 | AT2G01930 | 52.336 | 107 | 51 | 0 | 206 | 312 | 177 | 283 | 6.65e-41 | 144 |
Find 86 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTACCAAAATAAAGAAAA+TGG | 0.208626 | 4.1:-6485718 | MS.gene79458:CDS |
| CTTCTGTCATGTTGGATATA+TGG | 0.216505 | 4.1:+6485859 | None:intergenic |
| ATCTATACCATTGGATCTTA+AGG | 0.242442 | 4.1:-6485376 | MS.gene79458:CDS |
| TCAGAAGTTATAACAGTAAC+TGG | 0.272157 | 4.1:+6485795 | None:intergenic |
| CATTGGATCTTAAGGATTAC+TGG | 0.283657 | 4.1:-6485368 | MS.gene79458:CDS |
| TTTGTTCCTTTATTTGATGC+TGG | 0.301136 | 4.1:+6486162 | None:intergenic |
| ACTCCAGTACACGTGCAAAC+TGG | 0.357093 | 4.1:+6485582 | None:intergenic |
| TTGTTCCTTTATTTGATGCT+GGG | 0.361945 | 4.1:+6486163 | None:intergenic |
| AAATGGGCGAGGATTTAAAT+AGG | 0.362648 | 4.1:-6485701 | MS.gene79458:CDS |
| GTAACGATTTGTTCCATGTC+TGG | 0.409057 | 4.1:+6485344 | None:intergenic |
| GTCCCAGTTTGCACGTGTAC+TGG | 0.410401 | 4.1:-6485585 | MS.gene79458:CDS |
| CGTTGAATTCCACCATTGAA+TGG | 0.413813 | 4.1:+6485912 | None:intergenic |
| CAGTACTATTCCGACTTTGA+AGG | 0.424329 | 4.1:+6485943 | None:intergenic |
| ATGCGAGCATGGCGCTTGTT+CGG | 0.428637 | 4.1:+6485471 | None:intergenic |
| TGCCTGCCTTTCAGCCATAA+TGG | 0.435049 | 4.1:+6486109 | None:intergenic |
| ACCACGACAGTGCTACAAAT+GGG | 0.437083 | 4.1:-6485559 | MS.gene79458:CDS |
| AAGCGCCATGCTCGCATTGG+AGG | 0.439433 | 4.1:-6485465 | MS.gene79458:CDS |
| GGATCCCCAGCATCAAATAA+AGG | 0.448615 | 4.1:-6486168 | MS.gene79458:CDS |
| GGATAATGCTCTACTGGAAC+GGG | 0.450868 | 4.1:-6485982 | MS.gene79458:CDS |
| CTCCAGTACACGTGCAAACT+GGG | 0.457013 | 4.1:+6485583 | None:intergenic |
| ACTGGCAACTTTCCATTCAA+TGG | 0.459914 | 4.1:-6485924 | MS.gene79458:CDS |
| ATCTGAAAAGAATGAAGCCC+TGG | 0.461756 | 4.1:-6486054 | MS.gene79458:CDS |
| GACAAAGATCAAATCTGAAT+GGG | 0.471460 | 4.1:-6485661 | MS.gene79458:CDS |
| GTGCTTCATCCCTCTGCCGA+AGG | 0.475401 | 4.1:+6486015 | None:intergenic |
| CAAATCTGAATGGGATAGGC+AGG | 0.475987 | 4.1:-6485652 | MS.gene79458:CDS |
| GTCCATTATGGCTGAAAGGC+AGG | 0.476045 | 4.1:-6486111 | MS.gene79458:CDS |
| CCATGATTTATCTATACCAT+TGG | 0.476445 | 4.1:-6485385 | MS.gene79458:CDS |
| GGACAAAGATCAAATCTGAA+TGG | 0.478623 | 4.1:-6485662 | MS.gene79458:CDS |
| TGGATATATGGTTTGAAGAA+TGG | 0.483617 | 4.1:+6485871 | None:intergenic |
| AACAAGCGCCATGCTCGCAT+TGG | 0.488361 | 4.1:-6485468 | MS.gene79458:CDS |
| TCCGCCCTCCAATGCGAGCA+TGG | 0.489587 | 4.1:+6485460 | None:intergenic |
| CCTACCAAAATAAAGAAAAT+GGG | 0.492634 | 4.1:-6485717 | MS.gene79458:CDS |
| TGAAGAATGGTGCATCCGCT+TGG | 0.493558 | 4.1:+6485884 | None:intergenic |
| TACCACGACAGTGCTACAAA+TGG | 0.496139 | 4.1:-6485560 | MS.gene79458:CDS |
| AATAGGAAGGCTTATTCTGA+AGG | 0.504268 | 4.1:-6485684 | MS.gene79458:CDS |
| CTCAGTAGGTTTGCATCAGA+AGG | 0.511971 | 4.1:-6485408 | MS.gene79458:CDS |
| TGAAAACGGTAGGCATAAGA+TGG | 0.514492 | 4.1:-6486320 | MS.gene79458:CDS |
| AGCGCCATGCTCGCATTGGA+GGG | 0.517752 | 4.1:-6485464 | MS.gene79458:CDS |
| TCAGAGGGATAATGCTCTAC+TGG | 0.518249 | 4.1:-6485988 | MS.gene79458:CDS |
| GGGCTACGTCTCGAGCAGCC+AGG | 0.518686 | 4.1:+6486036 | None:intergenic |
| CTTCAAAGTCGGAATAGTAC+TGG | 0.519466 | 4.1:-6485942 | MS.gene79458:CDS |
| TGTTCCTTTATTTGATGCTG+GGG | 0.520374 | 4.1:+6486164 | None:intergenic |
| AGTACTATTCCGACTTTGAA+GGG | 0.520694 | 4.1:+6485944 | None:intergenic |
| GGATGAAGCACTTGCTCAGA+GGG | 0.522036 | 4.1:-6486003 | MS.gene79458:CDS |
| ATATGCTGCTTCTGTCATGT+TGG | 0.532878 | 4.1:+6485851 | None:intergenic |
| AGATCAAATCTGAATGGGAT+AGG | 0.533258 | 4.1:-6485656 | MS.gene79458:CDS |
| TTGTTCGGAAGCTGTGGTAG+TGG | 0.541295 | 4.1:+6485486 | None:intergenic |
| CAAAATAAAGAAAATGGGCG+AGG | 0.545395 | 4.1:-6485712 | MS.gene79458:CDS |
| GAGACGTAGCCCTTCGGCAG+AGG | 0.546456 | 4.1:-6486025 | MS.gene79458:CDS |
| CCAATGGTATAGATAAATCA+TGG | 0.547636 | 4.1:+6485385 | None:intergenic |
| GGCTACGTCTCGAGCAGCCA+GGG | 0.552588 | 4.1:+6486037 | None:intergenic |
| CCCCATTTGTAGCACTGTCG+TGG | 0.555932 | 4.1:+6485558 | None:intergenic |
| CAGAAGTTATAACAGTAACT+GGG | 0.557616 | 4.1:+6485796 | None:intergenic |
| TTTAAATGTGCAGTGGAATG+TGG | 0.558628 | 4.1:-6486189 | MS.gene79458:intron |
| CTGCTCGAGACGTAGCCCTT+CGG | 0.563490 | 4.1:-6486031 | MS.gene79458:CDS |
| CTACAGAGGAGCACATTCCC+TGG | 0.565304 | 4.1:-6486293 | MS.gene79458:intron |
| AGACGTAGCCCTTCGGCAGA+GGG | 0.565616 | 4.1:-6486024 | MS.gene79458:CDS |
| GGGCGAGGATTTAAATAGGA+AGG | 0.570874 | 4.1:-6485697 | MS.gene79458:CDS |
| CTCTTGCAGCCCTTCAAAGT+CGG | 0.574408 | 4.1:-6485953 | MS.gene79458:CDS |
| AAGGATTACTGGGCCAGACA+TGG | 0.576589 | 4.1:-6485357 | MS.gene79458:CDS |
| GCCATGCTCGCATTGGAGGG+CGG | 0.577730 | 4.1:-6485461 | MS.gene79458:CDS |
| TGCTTCATCCCTCTGCCGAA+GGG | 0.577861 | 4.1:+6486016 | None:intergenic |
| GGGATAATGCTCTACTGGAA+CGG | 0.583003 | 4.1:-6485983 | MS.gene79458:CDS |
| GTACACGTGCAAACTGGGAC+AGG | 0.585669 | 4.1:+6485588 | None:intergenic |
| ATAGGAAGGCTTATTCTGAA+GGG | 0.587900 | 4.1:-6485683 | MS.gene79458:CDS |
| ATTGGATCTTAAGGATTACT+GGG | 0.588784 | 4.1:-6485367 | MS.gene79458:CDS |
| TCTTCTTGAACTTGAACTAG+AGG | 0.590105 | 4.1:-6486084 | MS.gene79458:CDS |
| TTAGGTCCATTATGGCTGAA+AGG | 0.590519 | 4.1:-6486115 | MS.gene79458:CDS |
| GATGACCGCCAATATGAAAA+CGG | 0.592001 | 4.1:-6486334 | MS.gene79458:CDS |
| GAATGGGATAGGCAGGATGT+TGG | 0.593838 | 4.1:-6485645 | MS.gene79458:CDS |
| CAGTAATCCTTAAGATCCAA+TGG | 0.595456 | 4.1:+6485369 | None:intergenic |
| GGCAACTTTCCATTCAATGG+TGG | 0.607937 | 4.1:-6485921 | MS.gene79458:CDS |
| TGGCGCTTGTTCGGAAGCTG+TGG | 0.609294 | 4.1:+6485480 | None:intergenic |
| CCACGACAGTGCTACAAATG+GGG | 0.618535 | 4.1:-6485558 | MS.gene79458:CDS |
| CATAAGATGGACTACTACAG+AGG | 0.628336 | 4.1:-6486307 | MS.gene79458:CDS |
| ATTGGAGGGCGGAAAATGAG+CGG | 0.633747 | 4.1:-6485450 | MS.gene79458:CDS |
| TCATCTAACTAAGAGAACAA+AGG | 0.650253 | 4.1:-6485760 | MS.gene79458:CDS |
| CACGACAGTGCTACAAATGG+GGG | 0.651085 | 4.1:-6485557 | MS.gene79458:CDS |
| ACCGCCAATATGAAAACGGT+AGG | 0.665966 | 4.1:-6486330 | MS.gene79458:CDS |
| GGGATGAAGCACTTGCTCAG+AGG | 0.669930 | 4.1:-6486004 | MS.gene79458:CDS |
| AGTTATAACAGTAACTGGGG+AGG | 0.670600 | 4.1:+6485800 | None:intergenic |
| AGAAGTTATAACAGTAACTG+GGG | 0.682187 | 4.1:+6485797 | None:intergenic |
| TGGATGCATTGACAATGTAG+TGG | 0.702687 | 4.1:+6485506 | None:intergenic |
| GAATTCAACGTGGATCCAAG+CGG | 0.708406 | 4.1:-6485899 | MS.gene79458:CDS |
| TTCAATGGTGGAATTCAACG+TGG | 0.712678 | 4.1:-6485909 | MS.gene79458:CDS |
| AGAAGCAGCATATAGCACGA+CGG | 0.752304 | 4.1:-6485841 | MS.gene79458:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGTTATGAATAAAAAAATT+AGG | - | chr4.1:6485536-6485555 | MS.gene79458:CDS | 10.0% |
| !!! | AATTTTTTTATTCATAACTA+GGG | + | chr4.1:6485536-6485555 | None:intergenic | 10.0% |
| !!! | TAATTTTTTTATTCATAACT+AGG | + | chr4.1:6485537-6485556 | None:intergenic | 10.0% |
| !! | TAAAAAAATTAGGTCCATTA+TGG | - | chr4.1:6485546-6485565 | MS.gene79458:CDS | 20.0% |
| ! | ACCTACCAAAATAAAGAAAA+TGG | - | chr4.1:6485951-6485970 | MS.gene79458:CDS | 25.0% |
| ! | CCTACCAAAATAAAGAAAAT+GGG | - | chr4.1:6485952-6485971 | MS.gene79458:CDS | 25.0% |
| AGAAGTTATAACAGTAACTG+GGG | + | chr4.1:6485875-6485894 | None:intergenic | 30.0% | |
| ATCTATACCATTGGATCTTA+AGG | - | chr4.1:6486293-6486312 | MS.gene79458:intron | 30.0% | |
| ATTGGATCTTAAGGATTACT+GGG | - | chr4.1:6486302-6486321 | MS.gene79458:CDS | 30.0% | |
| CAGAAGTTATAACAGTAACT+GGG | + | chr4.1:6485876-6485895 | None:intergenic | 30.0% | |
| CCAATGGTATAGATAAATCA+TGG | + | chr4.1:6486287-6486306 | None:intergenic | 30.0% | |
| CCATGATTTATCTATACCAT+TGG | - | chr4.1:6486284-6486303 | MS.gene79458:intron | 30.0% | |
| GACAAAGATCAAATCTGAAT+GGG | - | chr4.1:6486008-6486027 | MS.gene79458:CDS | 30.0% | |
| TCAGAAGTTATAACAGTAAC+TGG | + | chr4.1:6485877-6485896 | None:intergenic | 30.0% | |
| TCATCTAACTAAGAGAACAA+AGG | - | chr4.1:6485909-6485928 | MS.gene79458:CDS | 30.0% | |
| TGGATATATGGTTTGAAGAA+TGG | + | chr4.1:6485801-6485820 | None:intergenic | 30.0% | |
| ! | ATTGGATTTTAAATGTGCAG+TGG | - | chr4.1:6485473-6485492 | MS.gene79458:CDS | 30.0% |
| ! | TTGTTCCTTTATTTGATGCT+GGG | + | chr4.1:6485509-6485528 | None:intergenic | 30.0% |
| ! | TTTGTTCCTTTATTTGATGC+TGG | + | chr4.1:6485510-6485529 | None:intergenic | 30.0% |
| !! | ATTGGGTTGATTTATTGGAT+TGG | - | chr4.1:6485455-6485474 | MS.gene79458:CDS | 30.0% |
| !!! | CCCATTTTCTTTATTTTGGT+AGG | + | chr4.1:6485955-6485974 | None:intergenic | 30.0% |
| AAATGGGCGAGGATTTAAAT+AGG | - | chr4.1:6485968-6485987 | MS.gene79458:CDS | 35.0% | |
| AATAGGAAGGCTTATTCTGA+AGG | - | chr4.1:6485985-6486004 | MS.gene79458:CDS | 35.0% | |
| AGATCAAATCTGAATGGGAT+AGG | - | chr4.1:6486013-6486032 | MS.gene79458:CDS | 35.0% | |
| AGTACTATTCCGACTTTGAA+GGG | + | chr4.1:6485728-6485747 | None:intergenic | 35.0% | |
| ATAGGAAGGCTTATTCTGAA+GGG | - | chr4.1:6485986-6486005 | MS.gene79458:CDS | 35.0% | |
| ATATGTGCATTCTACTTACC+AGG | + | chr4.1:6485397-6485416 | None:intergenic | 35.0% | |
| CAAAATAAAGAAAATGGGCG+AGG | - | chr4.1:6485957-6485976 | MS.gene79458:CDS | 35.0% | |
| CAGTAATCCTTAAGATCCAA+TGG | + | chr4.1:6486303-6486322 | None:intergenic | 35.0% | |
| CATTGGATCTTAAGGATTAC+TGG | - | chr4.1:6486301-6486320 | MS.gene79458:CDS | 35.0% | |
| CTTCTGTCATGTTGGATATA+TGG | + | chr4.1:6485813-6485832 | None:intergenic | 35.0% | |
| GGACAAAGATCAAATCTGAA+TGG | - | chr4.1:6486007-6486026 | MS.gene79458:CDS | 35.0% | |
| TATGTGCATTCTACTTACCA+GGG | + | chr4.1:6485396-6485415 | None:intergenic | 35.0% | |
| TCTTCTTGAACTTGAACTAG+AGG | - | chr4.1:6485585-6485604 | MS.gene79458:CDS | 35.0% | |
| TTTAAATGTGCAGTGGAATG+TGG | - | chr4.1:6485480-6485499 | MS.gene79458:CDS | 35.0% | |
| ! | TAACTTGCAGTTGCACTATT+GGG | - | chr4.1:6485438-6485457 | MS.gene79458:CDS | 35.0% |
| ! | TATGCCTACCGTTTTCATAT+TGG | + | chr4.1:6485346-6485365 | None:intergenic | 35.0% |
| ! | TGTTCCTTTATTTGATGCTG+GGG | + | chr4.1:6485508-6485527 | None:intergenic | 35.0% |
| ! | TTTTTAGACGACTTCTCAGT+AGG | - | chr4.1:6486247-6486266 | MS.gene79458:intron | 35.0% |
| !! | CTCGCCCATTTTCTTTATTT+TGG | + | chr4.1:6485959-6485978 | None:intergenic | 35.0% |
| !! | GCACTATTGGGTTGATTTAT+TGG | - | chr4.1:6485450-6485469 | MS.gene79458:CDS | 35.0% |
| !! | TTAACTTGCAGTTGCACTAT+TGG | - | chr4.1:6485437-6485456 | MS.gene79458:CDS | 35.0% |
| ACTGGCAACTTTCCATTCAA+TGG | - | chr4.1:6485745-6485764 | MS.gene79458:CDS | 40.0% | |
| AGTTATAACAGTAACTGGGG+AGG | + | chr4.1:6485872-6485891 | None:intergenic | 40.0% | |
| ATCTGAAAAGAATGAAGCCC+TGG | - | chr4.1:6485615-6485634 | MS.gene79458:CDS | 40.0% | |
| CAGTACTATTCCGACTTTGA+AGG | + | chr4.1:6485729-6485748 | None:intergenic | 40.0% | |
| CGTTGAATTCCACCATTGAA+TGG | + | chr4.1:6485760-6485779 | None:intergenic | 40.0% | |
| CTTCAAAGTCGGAATAGTAC+TGG | - | chr4.1:6485727-6485746 | MS.gene79458:CDS | 40.0% | |
| GATGACCGCCAATATGAAAA+CGG | - | chr4.1:6485335-6485354 | MS.gene79458:CDS | 40.0% | |
| TGAAAACGGTAGGCATAAGA+TGG | - | chr4.1:6485349-6485368 | MS.gene79458:CDS | 40.0% | |
| TTAGGTCCATTATGGCTGAA+AGG | - | chr4.1:6485554-6485573 | MS.gene79458:CDS | 40.0% | |
| ! | ATATGCTGCTTCTGTCATGT+TGG | + | chr4.1:6485821-6485840 | None:intergenic | 40.0% |
| ! | GTAACGATTTGTTCCATGTC+TGG | + | chr4.1:6486328-6486347 | None:intergenic | 40.0% |
| ! | TGGATGCATTGACAATGTAG+TGG | + | chr4.1:6486166-6486185 | None:intergenic | 40.0% |
| ! | TTCAATGGTGGAATTCAACG+TGG | - | chr4.1:6485760-6485779 | MS.gene79458:CDS | 40.0% |
| !! | CATAAGATGGACTACTACAG+AGG | - | chr4.1:6485362-6485381 | MS.gene79458:CDS | 40.0% |
| ACCACGACAGTGCTACAAAT+GGG | - | chr4.1:6486110-6486129 | MS.gene79458:CDS | 45.0% | |
| ACCGCCAATATGAAAACGGT+AGG | - | chr4.1:6485339-6485358 | MS.gene79458:CDS | 45.0% | |
| AGAAGCAGCATATAGCACGA+CGG | - | chr4.1:6485828-6485847 | MS.gene79458:CDS | 45.0% | |
| CAAATCTGAATGGGATAGGC+AGG | - | chr4.1:6486017-6486036 | MS.gene79458:CDS | 45.0% | |
| CTCAGTAGGTTTGCATCAGA+AGG | - | chr4.1:6486261-6486280 | MS.gene79458:intron | 45.0% | |
| GAATTCAACGTGGATCCAAG+CGG | - | chr4.1:6485770-6485789 | MS.gene79458:CDS | 45.0% | |
| GGATAATGCTCTACTGGAAC+GGG | - | chr4.1:6485687-6485706 | MS.gene79458:CDS | 45.0% | |
| GGATCCCCAGCATCAAATAA+AGG | - | chr4.1:6485501-6485520 | MS.gene79458:CDS | 45.0% | |
| GGCAACTTTCCATTCAATGG+TGG | - | chr4.1:6485748-6485767 | MS.gene79458:CDS | 45.0% | |
| GGGATAATGCTCTACTGGAA+CGG | - | chr4.1:6485686-6485705 | MS.gene79458:CDS | 45.0% | |
| GGGCGAGGATTTAAATAGGA+AGG | - | chr4.1:6485972-6485991 | MS.gene79458:CDS | 45.0% | |
| TACCACGACAGTGCTACAAA+TGG | - | chr4.1:6486109-6486128 | MS.gene79458:CDS | 45.0% | |
| TCAGAGGGATAATGCTCTAC+TGG | - | chr4.1:6485681-6485700 | MS.gene79458:CDS | 45.0% | |
| ! | GCCTACCGTTTTCATATTGG+CGG | + | chr4.1:6485343-6485362 | None:intergenic | 45.0% |
| AAGGATTACTGGGCCAGACA+TGG | - | chr4.1:6486312-6486331 | MS.gene79458:CDS | 50.0% | |
| ACTCCAGTACACGTGCAAAC+TGG | + | chr4.1:6486090-6486109 | None:intergenic | 50.0% | |
| ATTGGAGGGCGGAAAATGAG+CGG | - | chr4.1:6486219-6486238 | MS.gene79458:intron | 50.0% | |
| CACGACAGTGCTACAAATGG+GGG | - | chr4.1:6486112-6486131 | MS.gene79458:CDS | 50.0% | |
| CAGTGCTACAAATGGGGGAA+TGG | - | chr4.1:6486117-6486136 | MS.gene79458:CDS | 50.0% | |
| CCACGACAGTGCTACAAATG+GGG | - | chr4.1:6486111-6486130 | MS.gene79458:CDS | 50.0% | |
| CTCCAGTACACGTGCAAACT+GGG | + | chr4.1:6486089-6486108 | None:intergenic | 50.0% | |
| CTCTTGCAGCCCTTCAAAGT+CGG | - | chr4.1:6485716-6485735 | MS.gene79458:CDS | 50.0% | |
| GAATGGGATAGGCAGGATGT+TGG | - | chr4.1:6486024-6486043 | MS.gene79458:CDS | 50.0% | |
| GTCCATTATGGCTGAAAGGC+AGG | - | chr4.1:6485558-6485577 | MS.gene79458:CDS | 50.0% | |
| TGAAGAATGGTGCATCCGCT+TGG | + | chr4.1:6485788-6485807 | None:intergenic | 50.0% | |
| TGCCTGCCTTTCAGCCATAA+TGG | + | chr4.1:6485563-6485582 | None:intergenic | 50.0% | |
| TGCTACAAATGGGGGAATGG+TGG | - | chr4.1:6486120-6486139 | MS.gene79458:CDS | 50.0% | |
| TTGTTCGGAAGCTGTGGTAG+TGG | + | chr4.1:6486186-6486205 | None:intergenic | 50.0% | |
| ! | ACAAATGGGGGAATGGTGGA+TGG | - | chr4.1:6486124-6486143 | MS.gene79458:CDS | 50.0% |
| ! | GGATGAAGCACTTGCTCAGA+GGG | - | chr4.1:6485666-6485685 | MS.gene79458:CDS | 50.0% |
| AACAAGCGCCATGCTCGCAT+TGG | - | chr4.1:6486201-6486220 | MS.gene79458:intron | 55.0% | |
| ATGCGAGCATGGCGCTTGTT+CGG | + | chr4.1:6486201-6486220 | None:intergenic | 55.0% | |
| CCCCATTTGTAGCACTGTCG+TGG | + | chr4.1:6486114-6486133 | None:intergenic | 55.0% | |
| GTACACGTGCAAACTGGGAC+AGG | + | chr4.1:6486084-6486103 | None:intergenic | 55.0% | |
| GTCCCAGTTTGCACGTGTAC+TGG | - | chr4.1:6486084-6486103 | MS.gene79458:CDS | 55.0% | |
| TGCTTCATCCCTCTGCCGAA+GGG | + | chr4.1:6485656-6485675 | None:intergenic | 55.0% | |
| ! | CTACAGAGGAGCACATTCCC+TGG | - | chr4.1:6485376-6485395 | MS.gene79458:CDS | 55.0% |
| ! | GGGATGAAGCACTTGCTCAG+AGG | - | chr4.1:6485665-6485684 | MS.gene79458:CDS | 55.0% |
| AAGCGCCATGCTCGCATTGG+AGG | - | chr4.1:6486204-6486223 | MS.gene79458:intron | 60.0% | |
| AGACGTAGCCCTTCGGCAGA+GGG | - | chr4.1:6485645-6485664 | MS.gene79458:CDS | 60.0% | |
| AGCGCCATGCTCGCATTGGA+GGG | - | chr4.1:6486205-6486224 | MS.gene79458:intron | 60.0% | |
| CTGCTCGAGACGTAGCCCTT+CGG | - | chr4.1:6485638-6485657 | MS.gene79458:CDS | 60.0% | |
| GTGCTTCATCCCTCTGCCGA+AGG | + | chr4.1:6485657-6485676 | None:intergenic | 60.0% | |
| TGGCGCTTGTTCGGAAGCTG+TGG | + | chr4.1:6486192-6486211 | None:intergenic | 60.0% | |
| GAGACGTAGCCCTTCGGCAG+AGG | - | chr4.1:6485644-6485663 | MS.gene79458:CDS | 65.0% | |
| GCCATGCTCGCATTGGAGGG+CGG | - | chr4.1:6486208-6486227 | MS.gene79458:intron | 65.0% | |
| GGCTACGTCTCGAGCAGCCA+GGG | + | chr4.1:6485635-6485654 | None:intergenic | 65.0% | |
| TCCGCCCTCCAATGCGAGCA+TGG | + | chr4.1:6486212-6486231 | None:intergenic | 65.0% | |
| GGGCTACGTCTCGAGCAGCC+AGG | + | chr4.1:6485636-6485655 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 6485329 | 6486362 | 6485329 | ID=MS.gene79458 |
| chr4.1 | mRNA | 6485329 | 6486362 | 6485329 | ID=MS.gene79458.t1;Parent=MS.gene79458 |
| chr4.1 | exon | 6486294 | 6486362 | 6486294 | ID=MS.gene79458.t1.exon1;Parent=MS.gene79458.t1 |
| chr4.1 | CDS | 6486294 | 6486362 | 6486294 | ID=cds.MS.gene79458.t1;Parent=MS.gene79458.t1 |
| chr4.1 | exon | 6485329 | 6486198 | 6485329 | ID=MS.gene79458.t1.exon2;Parent=MS.gene79458.t1 |
| chr4.1 | CDS | 6485329 | 6486198 | 6485329 | ID=cds.MS.gene79458.t1;Parent=MS.gene79458.t1 |
| Gene Sequence |
| Protein sequence |
