AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24316

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24316.t1 MTR_1g021925 98.281 349 6 0 38 386 1 349 0.0 713
MS.gene24316.t1 MTR_4g069140 61.364 352 135 1 38 389 1 351 6.06e-164 465
MS.gene24316.t1 MTR_1g052685 35.931 231 147 1 135 364 84 314 4.31e-46 163
MS.gene24316.t1 MTR_7g092280 33.333 249 160 2 134 376 83 331 4.47e-42 152
MS.gene24316.t1 MTR_2g097980 33.473 239 144 3 134 372 83 306 1.19e-37 140
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24316.t1 AT1G75020 66.289 353 116 2 38 390 1 350 0.0 508
MS.gene24316.t1 AT1G75020 66.289 353 116 2 38 390 1 350 0.0 508
MS.gene24316.t1 AT3G18850 64.286 336 118 2 55 388 12 347 6.20e-163 462
MS.gene24316.t1 AT3G18850 64.286 336 118 2 55 388 12 347 6.20e-163 462
MS.gene24316.t1 AT3G18850 64.286 336 118 2 55 388 12 347 6.20e-163 462
MS.gene24316.t1 AT3G18850 64.286 336 118 2 55 388 12 347 6.20e-163 462
MS.gene24316.t1 AT3G18850 66.124 307 102 2 84 388 18 324 2.60e-152 434
MS.gene24316.t1 AT3G18850 60.199 201 78 2 190 388 16 216 2.77e-85 260
MS.gene24316.t1 AT3G57650 36.017 236 150 1 134 368 82 317 1.61e-46 164
MS.gene24316.t1 AT1G51260 30.798 263 178 3 107 365 53 315 3.58e-38 141

Find 79 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTATACTTGTCCAGAATTT+TGG 0.154653 1.1:-2532653 MS.gene24316:CDS
GCAGCTTTAGTTTCAGAAAT+TGG 0.158348 1.1:+2530751 None:intergenic
ACAAAATCTTTCAACATTTC+AGG 0.190346 1.1:-2532066 MS.gene24316:CDS
TAACGTACTTAAATGTTATT+TGG 0.191319 1.1:+2532624 None:intergenic
AGGATCCGAAAGATCCTTTA+TGG 0.230304 1.1:-2532046 MS.gene24316:CDS
TTTGGTGGTTACCAAAATTC+TGG 0.244131 1.1:+2532642 None:intergenic
CAGAAGTCCACTTGCATATT+CGG 0.261346 1.1:-2530795 MS.gene24316:CDS
AAAGCAATTGGTCCTTGATT+TGG 0.267935 1.1:+2530707 None:intergenic
CTGAAACTAAAGCTGCTTCT+TGG 0.278746 1.1:-2530744 MS.gene24316:CDS
AAGGCAGTATCATTCTTCTT+TGG 0.293370 1.1:-2532380 MS.gene24316:CDS
TGGTTGGGGATTTCAGATTC+TGG 0.302482 1.1:-2532138 MS.gene24316:CDS
CTTTCGCCGCTTGCAGTTGT+AGG 0.315648 1.1:-2532434 MS.gene24316:CDS
TTTAAGGGGTGTGATATGTT+TGG 0.328744 1.1:-2532495 MS.gene24316:CDS
CCAATTGCTTTCTGATTTCA+AGG 0.330496 1.1:-2530695 MS.gene24316:CDS
TAAAGCTGCTTCTTGGCTAA+TGG 0.348528 1.1:-2530737 MS.gene24316:CDS
ACCGCTCTATGACCCCTCTT+AGG 0.355930 1.1:-2532520 MS.gene24316:CDS
TCATTGCAGTGGAGAGGAAA+TGG 0.367397 1.1:-2532112 MS.gene24316:CDS
GTTTCATTAAGCTGCTCTTA+AGG 0.367606 1.1:+2532171 None:intergenic
TTCCATCTTCTTCAATGAAC+TGG 0.371430 1.1:+2532580 None:intergenic
CTTTCTGATTTCAAGGTTCA+AGG 0.386029 1.1:-2530688 MS.gene24316:CDS
TATCATTCTTCTTTGGACTT+TGG 0.386228 1.1:-2532373 MS.gene24316:CDS
TACGTATAATCGGTTCCTTC+GGG 0.405431 1.1:+2532011 None:intergenic
ATCACAGAACTGAGGTTGAT+TGG 0.411546 1.1:-2532250 MS.gene24316:CDS
GATAGCCATAAAGGATCTTT+CGG 0.432489 1.1:+2532041 None:intergenic
CAAAACGTGGTGCCTGATGC+TGG 0.432670 1.1:+2530082 None:intergenic
GTACGTATAATCGGTTCCTT+CGG 0.443486 1.1:+2532010 None:intergenic
CTATCACGGTAAAAGTGAAT+AGG 0.446000 1.1:+2530617 None:intergenic
CCTTGAAATCAGAAAGCAAT+TGG 0.447220 1.1:+2530695 None:intergenic
ATCAACCTCAGTTCTGTGAT+TGG 0.449343 1.1:+2532253 None:intergenic
AAGGCTAATGCTCCAGCATC+AGG 0.452238 1.1:-2530094 MS.gene24316:CDS
GTGGGATCTTGCTCTTAGAA+AGG 0.458545 1.1:-2532219 MS.gene24316:CDS
AAAGGGGTTTCACACTTGCT+TGG 0.459653 1.1:-2531664 MS.gene24316:CDS
TTGGACTTTGGTTATCTATG+TGG 0.460047 1.1:-2532361 MS.gene24316:CDS
TTCGAGGTAGTACGTATAAT+CGG 0.463252 1.1:+2532001 None:intergenic
GAAATTGGAATCTCCTCTAC+AGG 0.473130 1.1:+2530766 None:intergenic
TGGGATCTTGCTCTTAGAAA+GGG 0.490923 1.1:-2532218 MS.gene24316:CDS
TTATCAGTATTCGTTATAGT+AGG 0.491260 1.1:-2532403 MS.gene24316:CDS
AAGGGGTGTGATATGTTTGG+TGG 0.492443 1.1:-2532492 MS.gene24316:CDS
GACCAGTTCATTGAAGAAGA+TGG 0.493796 1.1:-2532582 MS.gene24316:CDS
GGAAACTCTACAAGGCTCAT+TGG 0.496811 1.1:-2531643 MS.gene24316:CDS
CGCTTGCAGTTGTAGGATTG+CGG 0.503380 1.1:-2532427 MS.gene24316:CDS
TTTAAGTACGTTATTGCAGA+AGG 0.506036 1.1:-2532614 MS.gene24316:CDS
GATTCTGGAATTCATTGCAG+TGG 0.510533 1.1:-2532123 MS.gene24316:CDS
CGTACTTAAATGTTATTTGG+TGG 0.514281 1.1:+2532627 None:intergenic
ATGAGCCAGAGCTCTGTGTA+GGG 0.515370 1.1:-2530123 MS.gene24316:intron
CTACAAGGCTCATTGGATGC+AGG 0.515831 1.1:-2531636 MS.gene24316:intron
CATTGCAGTGGAGAGGAAAT+GGG 0.521317 1.1:-2532111 MS.gene24316:CDS
GGTTGATTGGATGTACTTGT+GGG 0.523971 1.1:-2532237 MS.gene24316:CDS
CGCAATCCTACAACTGCAAG+CGG 0.528807 1.1:+2532428 None:intergenic
CACCTCTCAAATCAGATAGT+AGG 0.540849 1.1:-2532550 MS.gene24316:CDS
AATGGATGCATTCCAAATCA+AGG 0.541765 1.1:-2530719 MS.gene24316:CDS
GCTCTTAGAAAGGGAAGACT+AGG 0.543581 1.1:-2532209 MS.gene24316:CDS
ATATGCAAGTGGACTTCTGA+AGG 0.550458 1.1:+2530799 None:intergenic
AGTAATACATTTGTCAGCAC+AGG 0.552689 1.1:+2531696 None:intergenic
CAGTATTCGTTATAGTAGGA+AGG 0.557462 1.1:-2532399 MS.gene24316:CDS
TGGGGATAGTATTCCGATGA+GGG 0.559784 1.1:-2532294 MS.gene24316:CDS
AAAACATTGTCTAGAAAGGA+AGG 0.565471 1.1:+2530832 None:intergenic
AGGTTGATTGGATGTACTTG+TGG 0.569937 1.1:-2532238 MS.gene24316:CDS
CATGAGCCAGAGCTCTGTGT+AGG 0.572970 1.1:-2530124 MS.gene24316:intron
AGTAACACACGTTCCCTCAT+CGG 0.578657 1.1:+2532281 None:intergenic
CCCTAACCAACAAAATGAAG+AGG 0.579557 1.1:-2530659 MS.gene24316:CDS
CAAGGTAAAATAAGTAAACA+AGG 0.586845 1.1:+2530582 None:intergenic
ATCGGGTTCAAGTTATATGT+AGG 0.586979 1.1:-2530550 MS.gene24316:intron
AACCTACTATCTGATTTGAG+AGG 0.596830 1.1:+2532548 None:intergenic
TGGAATTCATTGCAGTGGAG+AGG 0.600003 1.1:-2532118 MS.gene24316:CDS
TTAAGTACGTTATTGCAGAA+GGG 0.608589 1.1:-2532613 MS.gene24316:CDS
CTGGGGATAGTATTCCGATG+AGG 0.613140 1.1:-2532295 MS.gene24316:CDS
GAGCCAGAGCTCTGTGTAGG+GGG 0.615426 1.1:-2530121 MS.gene24316:intron
AGTACGTTATTGCAGAAGGG+AGG 0.616647 1.1:-2532610 MS.gene24316:CDS
ACTTGCTTGGAAACTCTACA+AGG 0.626873 1.1:-2531651 MS.gene24316:CDS
GAACCCGATGTGAGAAAACA+AGG 0.629551 1.1:+2530564 None:intergenic
TGAGCCAGAGCTCTGTGTAG+GGG 0.629844 1.1:-2530122 MS.gene24316:intron
ACCTAAGAGGGGTCATAGAG+CGG 0.631998 1.1:+2532519 None:intergenic
TATTCGGCGTATTCCTGTAG+AGG 0.633768 1.1:-2530779 MS.gene24316:CDS
GGCGGTAAAACAAACTATCA+CGG 0.635114 1.1:+2530603 None:intergenic
GAATACGCCGAATATGCAAG+TGG 0.679908 1.1:+2530788 None:intergenic
ACATTTCATCTATCAAAACG+TGG 0.730088 1.1:+2530069 None:intergenic
TATCGCCAATCACAGAACTG+AGG 0.748204 1.1:-2532258 MS.gene24316:CDS
GGTAAAATAAGTAAACAAGG+CGG 0.784862 1.1:+2530585 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTAATATTTGATACT+CGG - chr1.1:2531164-2531183 MS.gene24316:intron 10.0%
!! ATAATATATTGTCTATTTGT+CGG + chr1.1:2530946-2530965 None:intergenic 15.0%
!! ATGTCAAATAAAATAATTTG+TGG + chr1.1:2530859-2530878 None:intergenic 15.0%
!!! AAAATTAATTTGTAATGAGT+TGG + chr1.1:2532550-2532569 None:intergenic 15.0%
!!! AAATTAATTTGTAATGAGTT+GGG + chr1.1:2532549-2532568 None:intergenic 15.0%
!! ATATGGAATATACACAAATT+CGG + chr1.1:2531691-2531710 None:intergenic 20.0%
!! TAACGTACTTAAATGTTATT+TGG + chr1.1:2530134-2530153 None:intergenic 20.0%
!!! TTTATCTTTTCGAATAGAAA+GGG + chr1.1:2530420-2530439 None:intergenic 20.0%
! ACAAAATCTTTCAACATTTC+AGG - chr1.1:2530689-2530708 MS.gene24316:CDS 25.0%
! AGTCAAAATATTGCTCATAA+TGG + chr1.1:2530893-2530912 None:intergenic 25.0%
! CAAGGTAAAATAAGTAAACA+AGG + chr1.1:2532176-2532195 None:intergenic 25.0%
! CAATATATTATTCACTTCAG+TGG - chr1.1:2530955-2530974 MS.gene24316:intron 25.0%
! GTATTACTTCCAAAAACAAA+GGG - chr1.1:2531074-2531093 MS.gene24316:intron 25.0%
! GTCAATTCATAATGACTTTA+TGG - chr1.1:2531186-2531205 MS.gene24316:intron 25.0%
! TATTACTTCCAAAAACAAAG+GGG - chr1.1:2531075-2531094 MS.gene24316:intron 25.0%
! TGTATTACTTCCAAAAACAA+AGG - chr1.1:2531073-2531092 MS.gene24316:intron 25.0%
! TTACATTATGTGATCGAAAT+CGG - chr1.1:2531472-2531491 MS.gene24316:intron 25.0%
! TTAGAAAAGAAAAGAGACAA+GGG + chr1.1:2531817-2531836 None:intergenic 25.0%
! TTATCAGTATTCGTTATAGT+AGG - chr1.1:2530352-2530371 MS.gene24316:intron 25.0%
! TTTAGAAAAGAAAAGAGACA+AGG + chr1.1:2531818-2531837 None:intergenic 25.0%
!! AAAACTAAAGTTGTCTTTTC+TGG - chr1.1:2530441-2530460 MS.gene24316:intron 25.0%
!! AAACTAAAGTTGTCTTTTCT+GGG - chr1.1:2530442-2530461 MS.gene24316:intron 25.0%
!! AAAGGTCAAATGTACAATTT+TGG - chr1.1:2532350-2532369 MS.gene24316:CDS 25.0%
!! AAGGTCAAATGTACAATTTT+GGG - chr1.1:2532351-2532370 MS.gene24316:CDS 25.0%
!! ATAATAGTTGATGCTATCTT+AGG + chr1.1:2532576-2532595 None:intergenic 25.0%
!! CATAGTGTTCTCAATTTTAA+AGG - chr1.1:2532332-2532351 MS.gene24316:CDS 25.0%
!! GTTTATCTTTTCGAATAGAA+AGG + chr1.1:2530421-2530440 None:intergenic 25.0%
!!! TGTTCAACAATATTTTGACA+TGG - chr1.1:2531766-2531785 MS.gene24316:intron 25.0%
!!! TTAATGAAACTACCGATTTT+TGG - chr1.1:2530597-2530616 MS.gene24316:CDS 25.0%
AAAACATTGTCTAGAAAGGA+AGG + chr1.1:2531926-2531945 None:intergenic 30.0%
AAATGCACAATGTTACAAAC+TGG - chr1.1:2532379-2532398 MS.gene24316:CDS 30.0%
ACCAAAAACATTGTCTAGAA+AGG + chr1.1:2531930-2531949 None:intergenic 30.0%
AGAAACTGCAAAGATACATT+TGG + chr1.1:2531338-2531357 None:intergenic 30.0%
ATATTCCATATCATTCCCTA+GGG - chr1.1:2531700-2531719 MS.gene24316:CDS 30.0%
GCATGTACATAATCTGTTAA+AGG + chr1.1:2532283-2532302 None:intergenic 30.0%
GGTAAAATAAGTAAACAAGG+CGG + chr1.1:2532173-2532192 None:intergenic 30.0%
TAGAAAAGAAAAGAGACAAG+GGG + chr1.1:2531816-2531835 None:intergenic 30.0%
TATATTCCATATCATTCCCT+AGG - chr1.1:2531699-2531718 MS.gene24316:CDS 30.0%
TATCATTCTTCTTTGGACTT+TGG - chr1.1:2530382-2530401 MS.gene24316:intron 30.0%
TCTCTGTTACCAAAATGTAA+TGG - chr1.1:2531232-2531251 MS.gene24316:intron 30.0%
TTAAGTACGTTATTGCAGAA+GGG - chr1.1:2530142-2530161 MS.gene24316:intron 30.0%
TTTAAGTACGTTATTGCAGA+AGG - chr1.1:2530141-2530160 MS.gene24316:intron 30.0%
! AACTAAAGTTGTCTTTTCTG+GGG - chr1.1:2530443-2530462 MS.gene24316:intron 30.0%
! AGAATTCCTCTTCATTTTGT+TGG + chr1.1:2532105-2532124 None:intergenic 30.0%
! CGTACTTAAATGTTATTTGG+TGG + chr1.1:2530131-2530150 None:intergenic 30.0%
! GTTATACTTGTCCAGAATTT+TGG - chr1.1:2530102-2530121 MS.gene24316:CDS 30.0%
! TCCTTTCTAGACAATGTTTT+TGG - chr1.1:2531926-2531945 MS.gene24316:intron 30.0%
!! TTACCAAAATGTAATGGACT+TGG - chr1.1:2531238-2531257 MS.gene24316:intron 30.0%
!!! TTTACCTTGTTTTCTCACAT+CGG - chr1.1:2532187-2532206 MS.gene24316:CDS 30.0%
AAAGCAATTGGTCCTTGATT+TGG + chr1.1:2532051-2532070 None:intergenic 35.0%
AAGGCAGTATCATTCTTCTT+TGG - chr1.1:2530375-2530394 MS.gene24316:intron 35.0%
AATGGATGCATTCCAAATCA+AGG - chr1.1:2532036-2532055 MS.gene24316:CDS 35.0%
AGTAATACATTTGTCAGCAC+AGG + chr1.1:2531062-2531081 None:intergenic 35.0%
ATGCATTGAAACTCATTCTC+AGG - chr1.1:2532442-2532461 MS.gene24316:CDS 35.0%
CAGTATTCGTTATAGTAGGA+AGG - chr1.1:2530356-2530375 MS.gene24316:intron 35.0%
CCAATTGCTTTCTGATTTCA+AGG - chr1.1:2532060-2532079 MS.gene24316:CDS 35.0%
CCTTGAAATCAGAAAGCAAT+TGG + chr1.1:2532063-2532082 None:intergenic 35.0%
CTATCACGGTAAAAGTGAAT+AGG + chr1.1:2532141-2532160 None:intergenic 35.0%
CTTTCTGATTTCAAGGTTCA+AGG - chr1.1:2532067-2532086 MS.gene24316:CDS 35.0%
GAAGGTTCAAATTTCAAGCT+CGG - chr1.1:2531547-2531566 MS.gene24316:intron 35.0%
GATAGCCATAAAGGATCTTT+CGG + chr1.1:2530717-2530736 None:intergenic 35.0%
GGAAAAAGAGATAGCCATAA+AGG + chr1.1:2530726-2530745 None:intergenic 35.0%
GTTTCATTAAGCTGCTCTTA+AGG + chr1.1:2530587-2530606 None:intergenic 35.0%
TACAGGGTAAATTCAAAGCA+AGG + chr1.1:2531398-2531417 None:intergenic 35.0%
TCAAAATCTGCATTCAAACC+TGG - chr1.1:2531595-2531614 MS.gene24316:intron 35.0%
TGAAATCCCCAACCAAAAAT+CGG + chr1.1:2530612-2530631 None:intergenic 35.0%
TGATATCAGAAGTCTAAGCA+AGG + chr1.1:2532422-2532441 None:intergenic 35.0%
TTCAGTTCCAAACGTATGTT+CGG - chr1.1:2531292-2531311 MS.gene24316:intron 35.0%
TTCCATCTTCTTCAATGAAC+TGG + chr1.1:2530178-2530197 None:intergenic 35.0%
TTCGAGGTAGTACGTATAAT+CGG + chr1.1:2530757-2530776 None:intergenic 35.0%
TTGGACTTTGGTTATCTATG+TGG - chr1.1:2530394-2530413 MS.gene24316:intron 35.0%
TTTGGATCCAAACATACGTT+TGG + chr1.1:2531320-2531339 None:intergenic 35.0%
! AAACCAAGTTTGCTTTCACT+AGG - chr1.1:2531743-2531762 MS.gene24316:CDS 35.0%
! AACCTACTATCTGATTTGAG+AGG + chr1.1:2530210-2530229 None:intergenic 35.0%
! AAGCCAAGTCCATTACATTT+TGG + chr1.1:2531244-2531263 None:intergenic 35.0%
! ATCGGGTTCAAGTTATATGT+AGG - chr1.1:2532205-2532224 MS.gene24316:CDS 35.0%
! GACTAACTTGTAGTTTCGAT+GGG - chr1.1:2532490-2532509 MS.gene24316:CDS 35.0%
! GCAGCTTTAGTTTCAGAAAT+TGG + chr1.1:2532007-2532026 None:intergenic 35.0%
! TAACACGATGCACGTATTTT+AGG + chr1.1:2530921-2530940 None:intergenic 35.0%
! TTGCTTTGAATTTACCCTGT+AGG - chr1.1:2531397-2531416 MS.gene24316:intron 35.0%
! TTTAAGGGGTGTGATATGTT+TGG - chr1.1:2530260-2530279 MS.gene24316:intron 35.0%
! TTTGGTGGTTACCAAAATTC+TGG + chr1.1:2530116-2530135 None:intergenic 35.0%
!! CAAAAATTTGCTGCTGAAGT+TGG - chr1.1:2531032-2531051 MS.gene24316:intron 35.0%
!! CATTTTGTTGGTTAGGGAAA+TGG + chr1.1:2532093-2532112 None:intergenic 35.0%
!! CCTCTTCATTTTGTTGGTTA+GGG + chr1.1:2532099-2532118 None:intergenic 35.0%
!! TCCTCTTCATTTTGTTGGTT+AGG + chr1.1:2532100-2532119 None:intergenic 35.0%
!!! AAACTACCGATTTTTGGTTG+GGG - chr1.1:2530603-2530622 MS.gene24316:CDS 35.0%
!!! CTCTGTGTTTTTTGCTTTAG+GGG - chr1.1:2531423-2531442 MS.gene24316:intron 35.0%
!!! GAAACTACCGATTTTTGGTT+GGG - chr1.1:2530602-2530621 MS.gene24316:CDS 35.0%
!!! GCTCTGTGTTTTTTGCTTTA+GGG - chr1.1:2531422-2531441 MS.gene24316:intron 35.0%
!!! TGAAACTACCGATTTTTGGT+TGG - chr1.1:2530601-2530620 MS.gene24316:CDS 35.0%
!!! TGCTCTGTGTTTTTTGCTTT+AGG - chr1.1:2531421-2531440 MS.gene24316:intron 35.0%
!!! TTACCTTGTTTTCTCACATC+GGG - chr1.1:2532188-2532207 MS.gene24316:CDS 35.0%
AAAAGAGACAAGGGGAAAGT+TGG + chr1.1:2531808-2531827 None:intergenic 40.0%
ACACCCCTTAAAAACCTAAG+AGG + chr1.1:2530252-2530271 None:intergenic 40.0%
ACACCTAGTGAAAGCAAACT+TGG + chr1.1:2531749-2531768 None:intergenic 40.0%
ACCCCTTAAAAACCTAAGAG+GGG + chr1.1:2530250-2530269 None:intergenic 40.0%
ACTTGCTTGGAAACTCTACA+AGG - chr1.1:2531104-2531123 MS.gene24316:intron 40.0%
AGGATCCGAAAGATCCTTTA+TGG - chr1.1:2530709-2530728 MS.gene24316:CDS 40.0%
ATCAACCTCAGTTCTGTGAT+TGG + chr1.1:2530505-2530524 None:intergenic 40.0%
CACCCCTTAAAAACCTAAGA+GGG + chr1.1:2530251-2530270 None:intergenic 40.0%
CACCTCTCAAATCAGATAGT+AGG - chr1.1:2530205-2530224 MS.gene24316:intron 40.0%
CAGAAGTCCACTTGCATATT+CGG - chr1.1:2531960-2531979 MS.gene24316:intron 40.0%
CATGCATCCAGTTAGCATAT+TGG + chr1.1:2531647-2531666 None:intergenic 40.0%
CCCTAACCAACAAAATGAAG+AGG - chr1.1:2532096-2532115 MS.gene24316:CDS 40.0%
CTGAAACTAAAGCTGCTTCT+TGG - chr1.1:2532011-2532030 MS.gene24316:intron 40.0%
GAAATTGGAATCTCCTCTAC+AGG + chr1.1:2531992-2532011 None:intergenic 40.0%
GACCAGTTCATTGAAGAAGA+TGG - chr1.1:2530173-2530192 MS.gene24316:intron 40.0%
GGCGGTAAAACAAACTATCA+CGG + chr1.1:2532155-2532174 None:intergenic 40.0%
GGTCGTTGTTCGATCAAAAT+CGG - chr1.1:2531525-2531544 MS.gene24316:intron 40.0%
GGTTGATTGGATGTACTTGT+GGG - chr1.1:2530518-2530537 MS.gene24316:intron 40.0%
GTTGTTCGATCAAAATCGGA+AGG - chr1.1:2531529-2531548 MS.gene24316:intron 40.0%
TAAAGCTGCTTCTTGGCTAA+TGG - chr1.1:2532018-2532037 MS.gene24316:CDS 40.0%
TGGGATCTTGCTCTTAGAAA+GGG - chr1.1:2530537-2530556 MS.gene24316:intron 40.0%
TTCGGATCCAAACGTATGTT+TGG - chr1.1:2531310-2531329 MS.gene24316:intron 40.0%
TTTGGATCCGAACATACGTT+TGG + chr1.1:2531302-2531321 None:intergenic 40.0%
! AAAAACACAGAGCATCCTAC+AGG + chr1.1:2531415-2531434 None:intergenic 40.0%
! AAAACACAGAGCATCCTACA+GGG + chr1.1:2531414-2531433 None:intergenic 40.0%
! AGGTTGATTGGATGTACTTG+TGG - chr1.1:2530517-2530536 MS.gene24316:intron 40.0%
! ATATGCAAGTGGACTTCTGA+AGG + chr1.1:2531959-2531978 None:intergenic 40.0%
! ATCACAGAACTGAGGTTGAT+TGG - chr1.1:2530505-2530524 MS.gene24316:intron 40.0%
! CGACTAACTTGTAGTTTCGA+TGG - chr1.1:2532489-2532508 MS.gene24316:CDS 40.0%
! CTTTAGGGGTGGATTTCTTT+AGG - chr1.1:2531437-2531456 MS.gene24316:intron 40.0%
! GACCCCTCTTAGGTTTTTAA+GGG - chr1.1:2530245-2530264 MS.gene24316:intron 40.0%
! GTACGTATAATCGGTTCCTT+CGG + chr1.1:2530748-2530767 None:intergenic 40.0%
! TACGTATAATCGGTTCCTTC+GGG + chr1.1:2530747-2530766 None:intergenic 40.0%
! TGACCCCTCTTAGGTTTTTA+AGG - chr1.1:2530244-2530263 MS.gene24316:intron 40.0%
!! ACCCCTCTTAGGTTTTTAAG+GGG - chr1.1:2530246-2530265 MS.gene24316:intron 40.0%
!! GATTCTGGAATTCATTGCAG+TGG - chr1.1:2530632-2530651 MS.gene24316:CDS 40.0%
!! GATTTTGATCGAACAACGAC+CGG + chr1.1:2531526-2531545 None:intergenic 40.0%
!!! GTGTGAAACCCCTTTGTTTT+TGG + chr1.1:2531086-2531105 None:intergenic 40.0%
!!! TGTGTTTTTTGCTTTAGGGG+TGG - chr1.1:2531426-2531445 MS.gene24316:intron 40.0%
AAAGGGGTTTCACACTTGCT+TGG - chr1.1:2531091-2531110 MS.gene24316:intron 45.0%
AACTAGCATTCTGCTTCCCT+AGG + chr1.1:2531719-2531738 None:intergenic 45.0%
ACGACCACCAATATGCTAAC+TGG - chr1.1:2531637-2531656 MS.gene24316:CDS 45.0%
ACTAGCATTCTGCTTCCCTA+GGG + chr1.1:2531718-2531737 None:intergenic 45.0%
AGTAACACACGTTCCCTCAT+CGG + chr1.1:2530477-2530496 None:intergenic 45.0%
AGTACGTTATTGCAGAAGGG+AGG - chr1.1:2530145-2530164 MS.gene24316:intron 45.0%
CATTGCAGTGGAGAGGAAAT+GGG - chr1.1:2530644-2530663 MS.gene24316:CDS 45.0%
GAACCCGATGTGAGAAAACA+AGG + chr1.1:2532194-2532213 None:intergenic 45.0%
GAATACGCCGAATATGCAAG+TGG + chr1.1:2531970-2531989 None:intergenic 45.0%
GCATCCAGTTAGCATATTGG+TGG + chr1.1:2531644-2531663 None:intergenic 45.0%
GCTCTTAGAAAGGGAAGACT+AGG - chr1.1:2530546-2530565 MS.gene24316:intron 45.0%
GGAAACTCTACAAGGCTCAT+TGG - chr1.1:2531112-2531131 MS.gene24316:intron 45.0%
GTCGTTGGATCGAGATCAAA+CGG + chr1.1:2531622-2531641 None:intergenic 45.0%
GTGGGATCTTGCTCTTAGAA+AGG - chr1.1:2530536-2530555 MS.gene24316:intron 45.0%
TATCGCCAATCACAGAACTG+AGG - chr1.1:2530497-2530516 MS.gene24316:intron 45.0%
TATTCGGCGTATTCCTGTAG+AGG - chr1.1:2531976-2531995 MS.gene24316:intron 45.0%
TCATTGCAGTGGAGAGGAAA+TGG - chr1.1:2530643-2530662 MS.gene24316:CDS 45.0%
TGCTTCCCTAGGGAATGATA+TGG + chr1.1:2531708-2531727 None:intergenic 45.0%
TGGAATTCATTGCAGTGGAG+AGG - chr1.1:2530637-2530656 MS.gene24316:CDS 45.0%
TGGGGATAGTATTCCGATGA+GGG - chr1.1:2530461-2530480 MS.gene24316:intron 45.0%
TGGTTGGGGATTTCAGATTC+TGG - chr1.1:2530617-2530636 MS.gene24316:CDS 45.0%
! AAGGGGTGTGATATGTTTGG+TGG - chr1.1:2530263-2530282 MS.gene24316:intron 45.0%
! GTTAGCATATTGGTGGTCGT+TGG + chr1.1:2531637-2531656 None:intergenic 45.0%
! TGGCTATCTCTTTTTCCCGA+AGG - chr1.1:2530729-2530748 MS.gene24316:CDS 45.0%
!! CAAATATTAAAAAAATTAAA+AGG + chr1.1:2531159-2531178 None:intergenic 5.0%
AAGGCTAATGCTCCAGCATC+AGG - chr1.1:2532661-2532680 MS.gene24316:CDS 50.0%
ACCTAAGAGGGGTCATAGAG+CGG + chr1.1:2530239-2530258 None:intergenic 50.0%
ACCTCGAATCCTTCTCAGCT+CGG - chr1.1:2530769-2530788 MS.gene24316:CDS 50.0%
AGATGAGATCCGAGCTGAGA+AGG + chr1.1:2530781-2530800 None:intergenic 50.0%
ATGAGCCAGAGCTCTGTGTA+GGG - chr1.1:2532632-2532651 MS.gene24316:CDS 50.0%
CGCAATCCTACAACTGCAAG+CGG + chr1.1:2530330-2530349 None:intergenic 50.0%
CGCTTGCAGTTGTAGGATTG+CGG - chr1.1:2530328-2530347 MS.gene24316:intron 50.0%
CTACAAGGCTCATTGGATGC+AGG - chr1.1:2531119-2531138 MS.gene24316:intron 50.0%
CTGGGGATAGTATTCCGATG+AGG - chr1.1:2530460-2530479 MS.gene24316:intron 50.0%
ACCGCTCTATGACCCCTCTT+AGG - chr1.1:2530235-2530254 MS.gene24316:intron 55.0%
ATTCCACGCATTCAGCACGC+CGG - chr1.1:2531504-2531523 MS.gene24316:intron 55.0%
CAAAACGTGGTGCCTGATGC+TGG + chr1.1:2532676-2532695 None:intergenic 55.0%
CATGAGCCAGAGCTCTGTGT+AGG - chr1.1:2532631-2532650 MS.gene24316:CDS 55.0%
CTTTCGCCGCTTGCAGTTGT+AGG - chr1.1:2530321-2530340 MS.gene24316:intron 55.0%
GCTCTGTGTAGGGGGTAAGA+AGG - chr1.1:2532642-2532661 MS.gene24316:CDS 55.0%
GGATCGAGATCAAACGGTCC+AGG + chr1.1:2531616-2531635 None:intergenic 55.0%
TCCGAGCTGAGAAGGATTCG+AGG + chr1.1:2530773-2530792 None:intergenic 55.0%
TGAGCCAGAGCTCTGTGTAG+GGG - chr1.1:2532633-2532652 MS.gene24316:CDS 55.0%
TTACCCCCTACACAGAGCTC+TGG + chr1.1:2532640-2532659 None:intergenic 55.0%
GAGCCAGAGCTCTGTGTAGG+GGG - chr1.1:2532634-2532653 MS.gene24316:CDS 60.0%
CGACCGGCGTGCTGAATGCG+TGG + chr1.1:2531510-2531529 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 2530081 2532696 2530081 ID=MS.gene24316
chr1.1 mRNA 2530081 2532696 2530081 ID=MS.gene24316.t1;Parent=MS.gene24316
chr1.1 exon 2532014 2532696 2532014 ID=MS.gene24316.t1.exon1;Parent=MS.gene24316.t1
chr1.1 CDS 2532014 2532696 2532014 ID=cds.MS.gene24316.t1;Parent=MS.gene24316.t1
chr1.1 exon 2531637 2531767 2531637 ID=MS.gene24316.t1.exon2;Parent=MS.gene24316.t1
chr1.1 CDS 2531637 2531767 2531637 ID=cds.MS.gene24316.t1;Parent=MS.gene24316.t1
chr1.1 exon 2530551 2530889 2530551 ID=MS.gene24316.t1.exon3;Parent=MS.gene24316.t1
chr1.1 CDS 2530551 2530889 2530551 ID=cds.MS.gene24316.t1;Parent=MS.gene24316.t1
chr1.1 exon 2530081 2530136 2530081 ID=MS.gene24316.t1.exon4;Parent=MS.gene24316.t1
chr1.1 CDS 2530081 2530136 2530081 ID=cds.MS.gene24316.t1;Parent=MS.gene24316.t1
Gene Sequence

>MS.gene24316

ATGAGGATTTATGCTATTGCTGTTATACTTGTCCAGAATTTTGGTAACCACCAAATAACATTTAAGTACGTTATTGCAGAAGGGAGGTTTTCGACCAGTTCATTGAAGAAGATGGAAGTTTGCACACCTCTCAAATCAGATAGTAGGTTAAAGCACCGCTCTATGACCCCTCTTAGGTTTTTAAGGGGTGTGATATGTTTGGTGGTGTTTCTTTCAACAGCTTTTATGTGTATAGTATATCTTTCGCCGCTTGCAGTTGTAGGATTGCGGCTTATCAGTATTCGTTATAGTAGGAAGGCAGTATCATTCTTCTTTGGACTTTGGTTATCTATGTGGCCCTTTCTATTCGAAAAGATAAACAAAACTAAAGTTGTCTTTTCTGGGGATAGTATTCCGATGAGGGAACGTGTGTTACTTATCGCCAATCACAGAACTGAGGTTGATTGGATGTACTTGTGGGATCTTGCTCTTAGAAAGGGAAGACTAGGATTTATAAAATATATCCTTAAGAGCAGCTTAATGAAACTACCGATTTTTGGTTGGGGATTTCAGATTCTGGAATTCATTGCAGTGGAGAGGAAATGGGAGATAGATGAGCAAATATTGCAACAAAATCTTTCAACATTTCAGGATCCGAAAGATCCTTTATGGCTATCTCTTTTTCCCGAAGGAACCGATTATACGTACTACCTCGAATCCTTCTCAGCTCGGATCTCATCTTTTCATTTCTAAGTGTTTTTATTATCATTGATAATGTATTAAATTCATTTTAATTCCACAAATTATTTTATTTGACATTTTGTTTGTATCCATTATGAGCAATATTTTGACTAGCTTCCTAAAATACGTGCATCGTGTTATACCGACAAATAGACAATATATTATTCACTTCAGTGGCACATTTGACATATTATTTGCTTTTTATGCAGTGAACAGAAGTGTAAAAGTAGTCAAAAATTTGCTGCTGAAGTTGGACTTCCTGTGCTGACAAATGTATTACTTCCAAAAACAAAGGGGTTTCACACTTGCTTGGAAACTCTACAAGGCTCATTGGATGCAGGTTTGTTTTATAATTCCTTTTAATTTTTTTAATATTTGATACTCGGTCAATTCATAATGACTTTATGGTAGATATTTATGAAGTTATGCAATCTCTGTTACCAAAATGTAATGGACTTGGCTTTTGAAAATTATAATAAGTATGATTGAATTTCAGTTCCAAACGTATGTTCGGATCCAAACGTATGTTTGGATCCAAATGTATCTTTGCAGTTTCTCAATTGTAAACAAGCATACAAGTACTTCACTTTTTCTCCTTGCTTTGAATTTACCCTGTAGGATGCTCTGTGTTTTTTGCTTTAGGGGTGGATTTCTTTAGGTGTACTTATAGCTTACATTATGTGATCGAAATCGGCAGTAAGAAATTCCACGCATTCAGCACGCCGGTCGTTGTTCGATCAAAATCGGAAGGTTCAAATTTCAAGCTCGGCATTTTAATTTGAAAATAAAAAAAATCAAAATCTGCATTCAAACCTGGACCGTTTGATCTCGATCCAACGACCACCAATATGCTAACTGGATGCATGTAATTACTTTCTGCAGTCAATCCGAATTTGTGTATATTCCATATCATTCCCTAGGGAAGCAGAATGCTAGTTCACAAAACCAAGTTTGCTTTCACTAGGTGTTCAACAATATTTTGACATGGCAGTTTACATAATGTTCCAACTTTCCCCTTGTCTCTTTTCTTTTCTAAATTTGTTCAACGTTTAAAGTATGTTAAACTTTATCTCTCAATCACGTGCAGTATATGACGTGACAATTGCATACAAGAATCAATGTCCTTCCTTTCTAGACAATGTTTTTGGTCTTGATCCTTCAGAAGTCCACTTGCATATTCGGCGTATTCCTGTAGAGGAGATTCCAATTTCTGAAACTAAAGCTGCTTCTTGGCTAATGGATGCATTCCAAATCAAGGACCAATTGCTTTCTGATTTCAAGGTTCAAGGCCATTTCCCTAACCAACAAAATGAAGAGGAATTCTCGACATTCAAGTGCCTATTCACTTTTACCGTGATAGTTTGTTTTACCGCCTTGTTTACTTATTTTACCTTGTTTTCTCACATCGGGTTCAAGTTATATGTAGGTCTATCTTGTGCATATCTTTCTATTGCAACGCGCTACAAAATTCAATTGATGCCTTTAACAGATTATGTACATGCATTCTATAACAGCAAGAAACAAAAGAATGCATAGTGTTCTCAATTTTAAAGGTCAAATGTACAATTTTGGGAAATCAAATGCACAATGTTACAAACTGGTATTTTGTTGCTCGAAACCTTGCTTAGACTTCTGATATCAATGCATTGAAACTCATTCTCAGGTCTTGTTAATTTCATTCTTTATAACGACTAACTTGTAGTTTCGATGGGTATCTAATATCTCTCTGCAATGACTCAAGAACTCCCAACTCATTACAAATTAATTTTGAACCTAAGATAGCATCAACTATTATCTTACTATTAAATTCAAAAATAACTTGATCATATTCATGAGCCAGAGCTCTGTGTAGGGGGTAAGAAGGCTAATGCTCCAGCATCAGGCACCACGTTTTGA
Protein sequence

>MS.gene24316.t1

MRIYAIAVILVQNFGNHQITFKYVIAEGRFSTSSLKKMEVCTPLKSDSRLKHRSMTPLRFLRGVICLVVFLSTAFMCIVYLSPLAVVGLRLISIRYSRKAVSFFFGLWLSMWPFLFEKINKTKVVFSGDSIPMRERVLLIANHRTEVDWMYLWDLALRKGRLGFIKYILKSSLMKLPIFGWGFQILEFIAVERKWEIDEQILQQNLSTFQDPKDPLWLSLFPEGTDYTEQKCKSSQKFAAEVGLPVLTNVLLPKTKGFHTCLETLQGSLDAVYDVTIAYKNQCPSFLDNVFGLDPSEVHLHIRRIPVEEIPISETKAASWLMDAFQIKDQLLSDFKVQGHFPNQQNEEEFSTFKCLFTFTVIVCFTALFTYFTLFSHIGFKLYVELCVGGKKANAPASGTTF