Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45717.t1 | XP_013456372.1 | 97.8 | 372 | 8 | 0 | 1 | 372 | 1 | 372 | 7.00E-213 | 749.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45717.t1 | Q9LHN4 | 63.2 | 356 | 129 | 1 | 18 | 371 | 12 | 367 | 1.2e-136 | 487.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45717.t1 | A0A072UMZ9 | 97.8 | 372 | 8 | 0 | 1 | 372 | 1 | 372 | 5.1e-213 | 749.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056668 | MS.gene45717 | 0.874543 | 6.22E-68 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene27346 | MS.gene45717 | PPI |
| MS.gene24316 | MS.gene45717 | PPI |
| MS.gene26930 | MS.gene45717 | PPI |
| MS.gene45717 | MS.gene062717 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45717.t1 | MTR_4g069140 | 97.849 | 372 | 8 | 0 | 1 | 372 | 1 | 372 | 0.0 | 752 |
| MS.gene45717.t1 | MTR_1g021925 | 61.853 | 367 | 139 | 1 | 1 | 366 | 1 | 367 | 7.43e-170 | 479 |
| MS.gene45717.t1 | MTR_1g052685 | 38.095 | 231 | 140 | 3 | 98 | 326 | 84 | 313 | 2.51e-48 | 168 |
| MS.gene45717.t1 | MTR_7g092280 | 33.065 | 248 | 163 | 2 | 96 | 340 | 82 | 329 | 1.16e-45 | 161 |
| MS.gene45717.t1 | MTR_2g097980 | 36.946 | 203 | 116 | 2 | 96 | 298 | 82 | 272 | 3.40e-41 | 149 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45717.t1 | AT3G18850 | 63.202 | 356 | 129 | 1 | 18 | 371 | 12 | 367 | 5.38e-176 | 494 |
| MS.gene45717.t1 | AT3G18850 | 63.202 | 356 | 129 | 1 | 18 | 371 | 12 | 367 | 5.38e-176 | 494 |
| MS.gene45717.t1 | AT3G18850 | 63.202 | 356 | 129 | 1 | 18 | 371 | 12 | 367 | 5.38e-176 | 494 |
| MS.gene45717.t1 | AT3G18850 | 63.202 | 356 | 129 | 1 | 18 | 371 | 12 | 367 | 5.38e-176 | 494 |
| MS.gene45717.t1 | AT3G18850 | 63.303 | 327 | 118 | 1 | 47 | 371 | 18 | 344 | 1.26e-161 | 457 |
| MS.gene45717.t1 | AT1G75020 | 60.446 | 359 | 139 | 2 | 14 | 371 | 13 | 369 | 1.60e-157 | 447 |
| MS.gene45717.t1 | AT1G75020 | 60.446 | 359 | 139 | 2 | 14 | 371 | 13 | 369 | 1.60e-157 | 447 |
| MS.gene45717.t1 | AT3G18850 | 56.818 | 220 | 93 | 1 | 154 | 371 | 17 | 236 | 9.07e-94 | 280 |
| MS.gene45717.t1 | AT3G57650 | 36.820 | 239 | 147 | 2 | 97 | 331 | 82 | 320 | 4.81e-49 | 170 |
| MS.gene45717.t1 | AT1G51260 | 30.696 | 316 | 207 | 7 | 28 | 337 | 12 | 321 | 6.06e-41 | 148 |
Find 72 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTCGACTGGATGTATTTA+TGG | 0.192495 | 4.4:-38420578 | MS.gene45717:CDS |
| TCTTTCTTGGACAATGTATT+TGG | 0.227806 | 4.4:-38419479 | MS.gene45717:CDS |
| GATGGATAGATTCCGATTTA+AGG | 0.239062 | 4.4:-38419369 | MS.gene45717:CDS |
| GTCTGTAGTCGTCGCTTATT+TGG | 0.253949 | 4.4:-38419183 | MS.gene45717:CDS |
| ATACCGCTGCCCGTCTTTCT+TGG | 0.257600 | 4.4:-38419492 | MS.gene45717:CDS |
| TACGTAAAATCAGTGCCTTC+AGG | 0.315013 | 4.4:+38420351 | None:intergenic |
| AAGGGGTTTGGTGTGTCTAT+TGG | 0.322223 | 4.4:-38420832 | MS.gene45717:CDS |
| ATTCGGCCACAACCCATTCT+TGG | 0.333164 | 4.4:-38419140 | MS.gene45717:CDS |
| TGAAATTTCTACGTGGTTGA+TGG | 0.356721 | 4.4:-38419387 | MS.gene45717:CDS |
| AAACCCCTTAGAAATCTAAA+AGG | 0.358797 | 4.4:+38420846 | None:intergenic |
| GCTTCCCACTTCCTTTCCAC+TGG | 0.362237 | 4.4:+38420447 | None:intergenic |
| TTTGGTGTGTCTATTGGTGC+TGG | 0.382243 | 4.4:-38420826 | MS.gene45717:CDS |
| GGATGGGAAAGCGGCAGATA+TGG | 0.384803 | 4.4:+38419432 | None:intergenic |
| CGGCTACATATTTCAACATT+CGG | 0.392577 | 4.4:-38419157 | MS.gene45717:CDS |
| AGTCGTCGCTTATTTGGTTC+CGG | 0.394861 | 4.4:-38419177 | MS.gene45717:CDS |
| AGCAAGCCAGAGAGGATCTT+GGG | 0.400056 | 4.4:+38420380 | None:intergenic |
| TTTAAAATGCCCTTCACAGC+AGG | 0.401277 | 4.4:+38419281 | None:intergenic |
| TTGGTACTTGGCTAACTTTG+TGG | 0.403348 | 4.4:-38420701 | MS.gene45717:CDS |
| TTTGTAACATTGGTGTTCTT+CGG | 0.407274 | 4.4:-38420792 | MS.gene45717:CDS |
| AAAGCAACTTGTCCTTAAAT+CGG | 0.413361 | 4.4:+38419357 | None:intergenic |
| GAAATTTCATCTTCAGATGT+TGG | 0.414236 | 4.4:+38419401 | None:intergenic |
| AAATTTCATCTTCAGATGTT+GGG | 0.418091 | 4.4:+38419402 | None:intergenic |
| CTTCCCACTTCCTTTCCACT+GGG | 0.434035 | 4.4:+38420448 | None:intergenic |
| AAGACTAAAGTTGTGTTCTC+TGG | 0.436607 | 4.4:-38420654 | MS.gene45717:CDS |
| GCCTCGCAACTCTTGCAAAC+AGG | 0.445731 | 4.4:+38419863 | None:intergenic |
| ACGCGTGTAACTTCAAAACT+TGG | 0.456940 | 4.4:-38420891 | MS.gene45717:CDS |
| AGTCGACTGGATGTATTTAT+GGG | 0.457387 | 4.4:-38420577 | MS.gene45717:CDS |
| TTCATCAGCATTTGTAACAT+TGG | 0.466713 | 4.4:-38420802 | MS.gene45717:CDS |
| TAGCAAGCCAGAGAGGATCT+TGG | 0.476050 | 4.4:+38420379 | None:intergenic |
| ATGATCCCCAAGATCCTCTC+TGG | 0.492077 | 4.4:-38420386 | MS.gene45717:CDS |
| ACGTAAAATCAGTGCCTTCA+GGG | 0.505273 | 4.4:+38420352 | None:intergenic |
| TCAGTTTACGATGTTACCAT+TGG | 0.507137 | 4.4:-38419521 | MS.gene45717:intron |
| GAGGGACCTCCCTGCTGTGA+AGG | 0.507648 | 4.4:-38419291 | MS.gene45717:CDS |
| CAAACAGGTACAAAAGCCCT+TGG | 0.513559 | 4.4:+38419878 | None:intergenic |
| TCATCCCAGTGGAAAGGAAG+TGG | 0.514537 | 4.4:-38420452 | MS.gene45717:CDS |
| CTTGGACAATGTATTTGGAG+TGG | 0.522752 | 4.4:-38419474 | MS.gene45717:CDS |
| ATGGGACCTTGCGTTGCGGA+AGG | 0.532796 | 4.4:-38420559 | MS.gene45717:CDS |
| AGATGTTGGGATACAGTGGA+TGG | 0.536671 | 4.4:+38419415 | None:intergenic |
| ACATCCAGTCGACTTCAGTT+CGG | 0.547137 | 4.4:+38420586 | None:intergenic |
| AGGGACCTCCCTGCTGTGAA+GGG | 0.552077 | 4.4:-38419290 | MS.gene45717:CDS |
| GTGACAGTGATTATATTGAC+TGG | 0.553389 | 4.4:-38419254 | MS.gene45717:CDS |
| ATATTGTTCCTTCGAGAGAA+CGG | 0.553559 | 4.4:-38420629 | MS.gene45717:CDS |
| TGTCCAAGAAAGACGGGCAG+CGG | 0.556324 | 4.4:+38419489 | None:intergenic |
| ATCACCGAACTGAAGTCGAC+TGG | 0.565240 | 4.4:-38420590 | MS.gene45717:CDS |
| TGGGACCTTGCGTTGCGGAA+GGG | 0.565717 | 4.4:-38420558 | MS.gene45717:CDS |
| ATACATTGTCCAAGAAAGAC+GGG | 0.565950 | 4.4:+38419483 | None:intergenic |
| TTGCGAGGCTCTCTAAATGC+AGG | 0.568276 | 4.4:-38419849 | MS.gene45717:intron |
| TGCATCCCTTCCGCAACGCA+AGG | 0.570372 | 4.4:+38420553 | None:intergenic |
| AGCACAATCCGTTCTCTCGA+AGG | 0.580059 | 4.4:+38420621 | None:intergenic |
| AATACATTGTCCAAGAAAGA+CGG | 0.589227 | 4.4:+38419482 | None:intergenic |
| CGAATGTTGAAATATGTAGC+CGG | 0.590553 | 4.4:+38419158 | None:intergenic |
| CTTCAGATGTTGGGATACAG+TGG | 0.606141 | 4.4:+38419411 | None:intergenic |
| ACCTGTTTGCAAGAGTTGCG+AGG | 0.606957 | 4.4:-38419864 | MS.gene45717:CDS |
| TTAAAATGCCCTTCACAGCA+GGG | 0.607039 | 4.4:+38419282 | None:intergenic |
| TAGAGTTCATCCCAGTGGAA+AGG | 0.609644 | 4.4:-38420458 | MS.gene45717:CDS |
| GCAGATATGGATATGAACTT+CGG | 0.613202 | 4.4:+38419445 | None:intergenic |
| CATCCCAGTGGAAAGGAAGT+GGG | 0.613686 | 4.4:-38420451 | MS.gene45717:CDS |
| GGATACAGTGGATGGGAAAG+CGG | 0.620018 | 4.4:+38419423 | None:intergenic |
| ATATGGATATGAACTTCGGA+AGG | 0.623808 | 4.4:+38419449 | None:intergenic |
| GCGTTGCGGAAGGGATGCAT+TGG | 0.626115 | 4.4:-38420549 | MS.gene45717:CDS |
| TCCTGATCAAGCAAAAGAGA+GGG | 0.626456 | 4.4:-38419309 | MS.gene45717:CDS |
| GGGAAAATAGCAAGCCAGAG+AGG | 0.628084 | 4.4:+38420372 | None:intergenic |
| TTCCTGATCAAGCAAAAGAG+AGG | 0.628899 | 4.4:-38419310 | MS.gene45717:CDS |
| GCAGCGGTATTTGTAGCCAA+TGG | 0.634421 | 4.4:+38419505 | None:intergenic |
| AAAACTCCAAGAATGGGTTG+TGG | 0.641853 | 4.4:+38419134 | None:intergenic |
| GATGTTGGGATACAGTGGAT+GGG | 0.645947 | 4.4:+38419416 | None:intergenic |
| GCAAGCCAGAGAGGATCTTG+GGG | 0.667193 | 4.4:+38420381 | None:intergenic |
| ATTTATGGGACCTTGCGTTG+CGG | 0.679165 | 4.4:-38420563 | MS.gene45717:CDS |
| GTAAAGTTTAAACCAGACAG+AGG | 0.706270 | 4.4:+38419208 | None:intergenic |
| CATACTAGAGTTCATCCCAG+TGG | 0.720097 | 4.4:-38420463 | MS.gene45717:CDS |
| AAATGCCCTTCACAGCAGGG+AGG | 0.725667 | 4.4:+38419285 | None:intergenic |
| CTGAAGATGAAATTTCTACG+TGG | 0.745759 | 4.4:-38419394 | MS.gene45717:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGAAAATCTATTAAAAAG+TGG | + | chr4.4:38419704-38419723 | None:intergenic | 15.0% |
| !!! | TTGATTTTTTCAAATAGAAA+GGG | + | chr4.4:38419352-38419371 | None:intergenic | 15.0% |
| !! | CTTAAAAAATTGTCTGAATT+TGG | + | chr4.4:38419754-38419773 | None:intergenic | 20.0% |
| !!! | AGTAAAACATTTTTCAGAAT+CGG | + | chr4.4:38420121-38420140 | None:intergenic | 20.0% |
| !!! | CTTTACAATTTTCAATTTCA+AGG | - | chr4.4:38420689-38420708 | MS.gene45717:CDS | 20.0% |
| !!! | GTTGATTTTTTCAAATAGAA+AGG | + | chr4.4:38419353-38419372 | None:intergenic | 20.0% |
| ! | AAATTTCATCTTCAGATGTT+GGG | + | chr4.4:38420628-38420647 | None:intergenic | 25.0% |
| ! | AACCAATAATTGCATATACA+TGG | + | chr4.4:38420227-38420246 | None:intergenic | 25.0% |
| ! | AATGATATCAGATTGATAGA+AGG | - | chr4.4:38420417-38420436 | MS.gene45717:CDS | 25.0% |
| ! | AGATTGATAGAAGGTTAAAA+AGG | - | chr4.4:38420426-38420445 | MS.gene45717:CDS | 25.0% |
| ! | ATCTTAAAAACTCCAAGAAT+GGG | + | chr4.4:38420902-38420921 | None:intergenic | 25.0% |
| ! | CACAATTCAAATAGTTAATG+AGG | - | chr4.4:38419781-38419800 | MS.gene45717:intron | 25.0% |
| ! | TACAAGAAGAAAATGATAGA+TGG | + | chr4.4:38420048-38420067 | None:intergenic | 25.0% |
| ! | TTCCATGTATATGCAATTAT+TGG | - | chr4.4:38420222-38420241 | MS.gene45717:intron | 25.0% |
| AAACCCCTTAGAAATCTAAA+AGG | + | chr4.4:38419184-38419203 | None:intergenic | 30.0% | |
| AAAGCAACTTGTCCTTAAAT+CGG | + | chr4.4:38420673-38420692 | None:intergenic | 30.0% | |
| AATACATTGTCCAAGAAAGA+CGG | + | chr4.4:38420548-38420567 | None:intergenic | 30.0% | |
| ATAATCCTTGGTTGAGTATA+AGG | + | chr4.4:38420283-38420302 | None:intergenic | 30.0% | |
| CATCTTAAAAACTCCAAGAA+TGG | + | chr4.4:38420903-38420922 | None:intergenic | 30.0% | |
| GAAATTTCATCTTCAGATGT+TGG | + | chr4.4:38420629-38420648 | None:intergenic | 30.0% | |
| TCTTTCTTGGACAATGTATT+TGG | - | chr4.4:38420548-38420567 | MS.gene45717:CDS | 30.0% | |
| TTCATCAGCATTTGTAACAT+TGG | - | chr4.4:38419225-38419244 | MS.gene45717:CDS | 30.0% | |
| ! | AGCTCCTTTTAGATTTCTAA+GGG | - | chr4.4:38419177-38419196 | MS.gene45717:CDS | 30.0% |
| ! | GGAATCATATGATTTTGTCA+CGG | - | chr4.4:38419878-38419897 | MS.gene45717:CDS | 30.0% |
| ! | TAGCTCCTTTTAGATTTCTA+AGG | - | chr4.4:38419176-38419195 | MS.gene45717:CDS | 30.0% |
| ! | TTGATGAGACTTCCAATTTT+TGG | - | chr4.4:38419529-38419548 | MS.gene45717:intron | 30.0% |
| ! | TTTGTAACATTGGTGTTCTT+CGG | - | chr4.4:38419235-38419254 | MS.gene45717:CDS | 30.0% |
| !! | TTTTAGATTTCTAAGGGGTT+TGG | - | chr4.4:38419183-38419202 | MS.gene45717:CDS | 30.0% |
| !!! | AAAACAACGTCGTTTTTCTT+TGG | - | chr4.4:38419307-38419326 | MS.gene45717:CDS | 30.0% |
| AAAGTCACCATTCGAAGTAT+GGG | + | chr4.4:38419938-38419957 | None:intergenic | 35.0% | |
| AAGACTAAAGTTGTGTTCTC+TGG | - | chr4.4:38419373-38419392 | MS.gene45717:CDS | 35.0% | |
| AAGTCGACTGGATGTATTTA+TGG | - | chr4.4:38419449-38419468 | MS.gene45717:CDS | 35.0% | |
| AGTCGACTGGATGTATTTAT+GGG | - | chr4.4:38419450-38419469 | MS.gene45717:CDS | 35.0% | |
| ATACATTGTCCAAGAAAGAC+GGG | + | chr4.4:38420547-38420566 | None:intergenic | 35.0% | |
| ATATGGATATGAACTTCGGA+AGG | + | chr4.4:38420581-38420600 | None:intergenic | 35.0% | |
| ATATTGTTCCTTCGAGAGAA+CGG | - | chr4.4:38419398-38419417 | MS.gene45717:CDS | 35.0% | |
| ATGCAATGATGCATAATCCT+TGG | + | chr4.4:38420295-38420314 | None:intergenic | 35.0% | |
| CCTTCGAAGTCAAAAATATG+CGG | - | chr4.4:38420081-38420100 | MS.gene45717:intron | 35.0% | |
| CGAATGTTGAAATATGTAGC+CGG | + | chr4.4:38420872-38420891 | None:intergenic | 35.0% | |
| CGGCTACATATTTCAACATT+CGG | - | chr4.4:38420870-38420889 | MS.gene45717:CDS | 35.0% | |
| CTGAAGATGAAATTTCTACG+TGG | - | chr4.4:38420633-38420652 | MS.gene45717:CDS | 35.0% | |
| GATGGATAGATTCCGATTTA+AGG | - | chr4.4:38420658-38420677 | MS.gene45717:CDS | 35.0% | |
| GCAGATATGGATATGAACTT+CGG | + | chr4.4:38420585-38420604 | None:intergenic | 35.0% | |
| GTAAAGTTTAAACCAGACAG+AGG | + | chr4.4:38420822-38420841 | None:intergenic | 35.0% | |
| GTAGTCAGGTTTCTTGTATT+TGG | - | chr4.4:38419857-38419876 | MS.gene45717:CDS | 35.0% | |
| GTGACAGTGATTATATTGAC+TGG | - | chr4.4:38420773-38420792 | MS.gene45717:CDS | 35.0% | |
| TCAGTTTACGATGTTACCAT+TGG | - | chr4.4:38420506-38420525 | MS.gene45717:CDS | 35.0% | |
| TGAAATGCCCAACCAAAAAT+TGG | + | chr4.4:38419544-38419563 | None:intergenic | 35.0% | |
| TGAAATTTCTACGTGGTTGA+TGG | - | chr4.4:38420640-38420659 | MS.gene45717:CDS | 35.0% | |
| TTAGACCTTATACTCAACCA+AGG | - | chr4.4:38420275-38420294 | MS.gene45717:intron | 35.0% | |
| ! | GCTCCTTTTAGATTTCTAAG+GGG | - | chr4.4:38419178-38419197 | MS.gene45717:CDS | 35.0% |
| !! | TTTTTAGCATCAGTTACAGC+AGG | - | chr4.4:38419284-38419303 | MS.gene45717:CDS | 35.0% |
| !!! | GAGACTTCCAATTTTTGGTT+GGG | - | chr4.4:38419534-38419553 | MS.gene45717:intron | 35.0% |
| !!! | TGAGACTTCCAATTTTTGGT+TGG | - | chr4.4:38419533-38419552 | MS.gene45717:intron | 35.0% |
| AAAAATATGCGGCTGAACAC+GGG | - | chr4.4:38420092-38420111 | MS.gene45717:intron | 40.0% | |
| ACGCGTGTAACTTCAAAACT+TGG | - | chr4.4:38419136-38419155 | MS.gene45717:CDS | 40.0% | |
| ACGTAAAATCAGTGCCTTCA+GGG | + | chr4.4:38419678-38419697 | None:intergenic | 40.0% | |
| CAAAAATATGCGGCTGAACA+CGG | - | chr4.4:38420091-38420110 | MS.gene45717:intron | 40.0% | |
| CAAAGTCACCATTCGAAGTA+TGG | + | chr4.4:38419939-38419958 | None:intergenic | 40.0% | |
| CTTGGACAATGTATTTGGAG+TGG | - | chr4.4:38420553-38420572 | MS.gene45717:CDS | 40.0% | |
| GATGGCTAAGAATCAGCAAA+AGG | + | chr4.4:38420030-38420049 | None:intergenic | 40.0% | |
| TACGTAAAATCAGTGCCTTC+AGG | + | chr4.4:38419679-38419698 | None:intergenic | 40.0% | |
| TCCTGATCAAGCAAAAGAGA+GGG | - | chr4.4:38420718-38420737 | MS.gene45717:CDS | 40.0% | |
| TTAAAATGCCCTTCACAGCA+GGG | + | chr4.4:38420748-38420767 | None:intergenic | 40.0% | |
| TTCCTGATCAAGCAAAAGAG+AGG | - | chr4.4:38420717-38420736 | MS.gene45717:CDS | 40.0% | |
| TTGGTACTTGGCTAACTTTG+TGG | - | chr4.4:38419326-38419345 | MS.gene45717:CDS | 40.0% | |
| ! | CTTTTGCTTGATCAGGAAAC+TGG | + | chr4.4:38420715-38420734 | None:intergenic | 40.0% |
| ! | GTTTTACTGCCGAAAACCAA+GGG | - | chr4.4:38420133-38420152 | MS.gene45717:intron | 40.0% |
| ! | TGTTTTACTGCCGAAAACCA+AGG | - | chr4.4:38420132-38420151 | MS.gene45717:intron | 40.0% |
| ! | TTTAAAATGCCCTTCACAGC+AGG | + | chr4.4:38420749-38420768 | None:intergenic | 40.0% |
| !! | AAAACTCCAAGAATGGGTTG+TGG | + | chr4.4:38420896-38420915 | None:intergenic | 40.0% |
| !! | GTACAAAAGCCCTTGGTTTT+CGG | + | chr4.4:38420145-38420164 | None:intergenic | 40.0% |
| !!! | ACTTCACTTTTTCCTCTGTC+TGG | - | chr4.4:38420807-38420826 | MS.gene45717:CDS | 40.0% |
| !!! | CCGCATATTTTTGACTTCGA+AGG | + | chr4.4:38420084-38420103 | None:intergenic | 40.0% |
| !!! | CGTCGTTTTTCTTTGGTACT+TGG | - | chr4.4:38419314-38419333 | MS.gene45717:CDS | 40.0% |
| AGATGTTGGGATACAGTGGA+TGG | + | chr4.4:38420615-38420634 | None:intergenic | 45.0% | |
| ATTTATGGGACCTTGCGTTG+CGG | - | chr4.4:38419464-38419483 | MS.gene45717:CDS | 45.0% | |
| CAAACAGGTACAAAAGCCCT+TGG | + | chr4.4:38420152-38420171 | None:intergenic | 45.0% | |
| CATACTAGAGTTCATCCCAG+TGG | - | chr4.4:38419564-38419583 | MS.gene45717:intron | 45.0% | |
| CTTCAGATGTTGGGATACAG+TGG | + | chr4.4:38420619-38420638 | None:intergenic | 45.0% | |
| GATGTTGGGATACAGTGGAT+GGG | + | chr4.4:38420614-38420633 | None:intergenic | 45.0% | |
| GCTATCACCCATACTTCGAA+TGG | - | chr4.4:38419928-38419947 | MS.gene45717:CDS | 45.0% | |
| GCTTATGATCATCGTGATGC+TGG | - | chr4.4:38419830-38419849 | MS.gene45717:intron | 45.0% | |
| GTCTGTAGTCGTCGCTTATT+TGG | - | chr4.4:38420844-38420863 | MS.gene45717:CDS | 45.0% | |
| TAGAGTTCATCCCAGTGGAA+AGG | - | chr4.4:38419569-38419588 | MS.gene45717:intron | 45.0% | |
| ! | ACATCCAGTCGACTTCAGTT+CGG | + | chr4.4:38419444-38419463 | None:intergenic | 45.0% |
| ! | AGTCGTCGCTTATTTGGTTC+CGG | - | chr4.4:38420850-38420869 | MS.gene45717:CDS | 45.0% |
| ! | TCCCTCTCTTTTGCTTGATC+AGG | + | chr4.4:38420722-38420741 | None:intergenic | 45.0% |
| ! | TTTGGTGTGTCTATTGGTGC+TGG | - | chr4.4:38419201-38419220 | MS.gene45717:CDS | 45.0% |
| !! | AAGGGGTTTGGTGTGTCTAT+TGG | - | chr4.4:38419195-38419214 | MS.gene45717:CDS | 45.0% |
| !!! | TGGCTTGCTATTTTCCCTGA+AGG | - | chr4.4:38419661-38419680 | MS.gene45717:intron | 45.0% |
| ACCTGTTTGCAAGAGTTGCG+AGG | - | chr4.4:38420163-38420182 | MS.gene45717:intron | 50.0% | |
| AGCAAGCCAGAGAGGATCTT+GGG | + | chr4.4:38419650-38419669 | None:intergenic | 50.0% | |
| AGCACAATCCGTTCTCTCGA+AGG | + | chr4.4:38419409-38419428 | None:intergenic | 50.0% | |
| ATCACCGAACTGAAGTCGAC+TGG | - | chr4.4:38419437-38419456 | MS.gene45717:CDS | 50.0% | |
| ATGATCCCCAAGATCCTCTC+TGG | - | chr4.4:38419641-38419660 | MS.gene45717:intron | 50.0% | |
| ATTCGGCCACAACCCATTCT+TGG | - | chr4.4:38420887-38420906 | MS.gene45717:CDS | 50.0% | |
| CATCCCAGTGGAAAGGAAGT+GGG | - | chr4.4:38419576-38419595 | MS.gene45717:intron | 50.0% | |
| CTTCCCACTTCCTTTCCACT+GGG | + | chr4.4:38419582-38419601 | None:intergenic | 50.0% | |
| GAGGCTCTCTAAATGCAGGT+TGG | - | chr4.4:38420182-38420201 | MS.gene45717:intron | 50.0% | |
| GCAGCGGTATTTGTAGCCAA+TGG | + | chr4.4:38420525-38420544 | None:intergenic | 50.0% | |
| GGATACAGTGGATGGGAAAG+CGG | + | chr4.4:38420607-38420626 | None:intergenic | 50.0% | |
| GGGAAAATAGCAAGCCAGAG+AGG | + | chr4.4:38419658-38419677 | None:intergenic | 50.0% | |
| GTGATGCTGGAGAAGTAGTC+AGG | - | chr4.4:38419843-38419862 | MS.gene45717:intron | 50.0% | |
| TAGCAAGCCAGAGAGGATCT+TGG | + | chr4.4:38419651-38419670 | None:intergenic | 50.0% | |
| TCATCCCAGTGGAAAGGAAG+TGG | - | chr4.4:38419575-38419594 | MS.gene45717:intron | 50.0% | |
| TTGCGAGGCTCTCTAAATGC+AGG | - | chr4.4:38420178-38420197 | MS.gene45717:intron | 50.0% | |
| AAATGCCCTTCACAGCAGGG+AGG | + | chr4.4:38420745-38420764 | None:intergenic | 55.0% | |
| ATACCGCTGCCCGTCTTTCT+TGG | - | chr4.4:38420535-38420554 | MS.gene45717:CDS | 55.0% | |
| GCAAGCCAGAGAGGATCTTG+GGG | + | chr4.4:38419649-38419668 | None:intergenic | 55.0% | |
| GCCTCGCAACTCTTGCAAAC+AGG | + | chr4.4:38420167-38420186 | None:intergenic | 55.0% | |
| GCTTCCCACTTCCTTTCCAC+TGG | + | chr4.4:38419583-38419602 | None:intergenic | 55.0% | |
| GGATGGGAAAGCGGCAGATA+TGG | + | chr4.4:38420598-38420617 | None:intergenic | 55.0% | |
| TGTCCAAGAAAGACGGGCAG+CGG | + | chr4.4:38420541-38420560 | None:intergenic | 55.0% | |
| AGGGACCTCCCTGCTGTGAA+GGG | - | chr4.4:38420737-38420756 | MS.gene45717:CDS | 60.0% | |
| ATGGGACCTTGCGTTGCGGA+AGG | - | chr4.4:38419468-38419487 | MS.gene45717:CDS | 60.0% | |
| GCGTTGCGGAAGGGATGCAT+TGG | - | chr4.4:38419478-38419497 | MS.gene45717:CDS | 60.0% | |
| TGCATCCCTTCCGCAACGCA+AGG | + | chr4.4:38419477-38419496 | None:intergenic | 60.0% | |
| TGGGACCTTGCGTTGCGGAA+GGG | - | chr4.4:38419469-38419488 | MS.gene45717:CDS | 60.0% | |
| GAGGGACCTCCCTGCTGTGA+AGG | - | chr4.4:38420736-38420755 | MS.gene45717:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 38419124 | 38420925 | 38419124 | ID=MS.gene45717 |
| chr4.4 | mRNA | 38419124 | 38420925 | 38419124 | ID=MS.gene45717.t1;Parent=MS.gene45717 |
| chr4.4 | exon | 38420354 | 38420925 | 38420354 | ID=MS.gene45717.t1.exon1;Parent=MS.gene45717.t1 |
| chr4.4 | CDS | 38420354 | 38420925 | 38420354 | ID=cds.MS.gene45717.t1;Parent=MS.gene45717.t1 |
| chr4.4 | exon | 38419850 | 38419980 | 38419850 | ID=MS.gene45717.t1.exon2;Parent=MS.gene45717.t1 |
| chr4.4 | CDS | 38419850 | 38419980 | 38419850 | ID=cds.MS.gene45717.t1;Parent=MS.gene45717.t1 |
| chr4.4 | exon | 38419124 | 38419539 | 38419124 | ID=MS.gene45717.t1.exon3;Parent=MS.gene45717.t1 |
| chr4.4 | CDS | 38419124 | 38419539 | 38419124 | ID=cds.MS.gene45717.t1;Parent=MS.gene45717.t1 |
| Gene Sequence |
| Protein sequence |
