Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056668.t1 | XP_013456372.1 | 97.6 | 372 | 9 | 0 | 1 | 372 | 1 | 372 | 1.60E-212 | 748.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056668.t1 | Q9LHN4 | 62.9 | 356 | 130 | 1 | 18 | 371 | 12 | 367 | 2.7e-136 | 486.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056668.t1 | A0A072UMZ9 | 97.6 | 372 | 9 | 0 | 1 | 372 | 1 | 372 | 1.1e-212 | 748.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056668 | MS.gene45717 | 0.874543 | 6.22E-68 | -1.69E-46 |
| MS.gene056668 | MS.gene57097 | 0.810003 | 1.43E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene056668 | MS.gene24316 | PPI |
| MS.gene27346 | MS.gene056668 | PPI |
| MS.gene26930 | MS.gene056668 | PPI |
| MS.gene056668 | MS.gene062717 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056668.t1 | MTR_4g069140 | 97.581 | 372 | 9 | 0 | 1 | 372 | 1 | 372 | 0.0 | 751 |
| MS.gene056668.t1 | MTR_1g021925 | 61.580 | 367 | 140 | 1 | 1 | 366 | 1 | 367 | 2.17e-169 | 478 |
| MS.gene056668.t1 | MTR_1g052685 | 38.095 | 231 | 140 | 3 | 98 | 326 | 84 | 313 | 4.97e-48 | 167 |
| MS.gene056668.t1 | MTR_7g092280 | 33.065 | 248 | 163 | 2 | 96 | 340 | 82 | 329 | 6.14e-46 | 162 |
| MS.gene056668.t1 | MTR_2g097980 | 36.019 | 211 | 123 | 2 | 96 | 306 | 82 | 280 | 3.58e-41 | 149 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056668.t1 | AT3G18850 | 62.921 | 356 | 130 | 1 | 18 | 371 | 12 | 367 | 1.62e-175 | 493 |
| MS.gene056668.t1 | AT3G18850 | 62.921 | 356 | 130 | 1 | 18 | 371 | 12 | 367 | 1.62e-175 | 493 |
| MS.gene056668.t1 | AT3G18850 | 62.921 | 356 | 130 | 1 | 18 | 371 | 12 | 367 | 1.62e-175 | 493 |
| MS.gene056668.t1 | AT3G18850 | 62.921 | 356 | 130 | 1 | 18 | 371 | 12 | 367 | 1.62e-175 | 493 |
| MS.gene056668.t1 | AT3G18850 | 62.997 | 327 | 119 | 1 | 47 | 371 | 18 | 344 | 4.15e-161 | 456 |
| MS.gene056668.t1 | AT1G75020 | 60.167 | 359 | 140 | 2 | 14 | 371 | 13 | 369 | 5.70e-157 | 446 |
| MS.gene056668.t1 | AT1G75020 | 60.167 | 359 | 140 | 2 | 14 | 371 | 13 | 369 | 5.70e-157 | 446 |
| MS.gene056668.t1 | AT3G18850 | 56.364 | 220 | 94 | 1 | 154 | 371 | 17 | 236 | 3.38e-93 | 279 |
| MS.gene056668.t1 | AT3G57650 | 36.402 | 239 | 148 | 2 | 97 | 331 | 82 | 320 | 1.50e-48 | 169 |
| MS.gene056668.t1 | AT1G51260 | 30.696 | 316 | 207 | 7 | 28 | 337 | 12 | 321 | 1.07e-40 | 147 |
Find 73 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTCGACTGGATGTATTTA+TGG | 0.192495 | 4.3:-36173900 | MS.gene056668:CDS |
| TCTTTCTTGGACAATGTATT+TGG | 0.227806 | 4.3:-36172800 | MS.gene056668:CDS |
| GATGGATAGATTCCGATTTA+AGG | 0.239062 | 4.3:-36172690 | MS.gene056668:CDS |
| GTCTGTAGTCGTCGCTTATT+TGG | 0.253949 | 4.3:-36172504 | MS.gene056668:CDS |
| ATACCGCTGCCCGTCTTTCT+TGG | 0.257600 | 4.3:-36172813 | MS.gene056668:CDS |
| TACGTAAAATCAGTGCCTTC+AGG | 0.315013 | 4.3:+36173673 | None:intergenic |
| TTTGACTTCGAAGGCACTTC+TGG | 0.320757 | 4.3:+36173277 | None:intergenic |
| AAGGGGTTTGGTGTGTCTAT+TGG | 0.322223 | 4.3:-36174154 | MS.gene056668:CDS |
| ATTCGGCCACAACCCATTCT+TGG | 0.333164 | 4.3:-36172461 | MS.gene056668:CDS |
| TGAAATTTCTACGTGGTTGA+TGG | 0.356721 | 4.3:-36172708 | MS.gene056668:CDS |
| AAACCCCTTAGAAATCTAAA+AGG | 0.358797 | 4.3:+36174168 | None:intergenic |
| GCTTCCCACTTCCTTTCCAC+TGG | 0.362237 | 4.3:+36173769 | None:intergenic |
| TTTGGTGTGTCTATTGGTGC+TGG | 0.382243 | 4.3:-36174148 | MS.gene056668:CDS |
| GGATGGGAAAGCGGCAGATA+TGG | 0.384803 | 4.3:+36172753 | None:intergenic |
| CGGCTACATATTTCAACATT+CGG | 0.392577 | 4.3:-36172478 | MS.gene056668:CDS |
| AGTCGTCGCTTATTTGGTTC+CGG | 0.394861 | 4.3:-36172498 | MS.gene056668:CDS |
| AGCAAGCCAGAGAGGATCTT+GGG | 0.400056 | 4.3:+36173702 | None:intergenic |
| TTTAAAATGCCCTTCACAGC+AGG | 0.401277 | 4.3:+36172602 | None:intergenic |
| TTGGTACTTGGCTAACTTTG+TGG | 0.403348 | 4.3:-36174023 | MS.gene056668:CDS |
| TTTGTAACATTGGTGTTCTT+CGG | 0.407274 | 4.3:-36174114 | MS.gene056668:CDS |
| AAAGCAACTTGTCCTTAAAT+CGG | 0.413361 | 4.3:+36172678 | None:intergenic |
| GAAATTTCATCTTCAGATGT+TGG | 0.414236 | 4.3:+36172722 | None:intergenic |
| AAATTTCATCTTCAGATGTT+GGG | 0.418091 | 4.3:+36172723 | None:intergenic |
| CTTCCCACTTCCTTTCCACT+GGG | 0.434035 | 4.3:+36173770 | None:intergenic |
| AAGACTAAAGTTGTGTTCTC+TGG | 0.436607 | 4.3:-36173976 | MS.gene056668:CDS |
| GCCTCGCAACTCTTGCAAAC+AGG | 0.445731 | 4.3:+36173185 | None:intergenic |
| ACGCGTGTAACTTCAAAACT+TGG | 0.456940 | 4.3:-36174213 | MS.gene056668:CDS |
| AGTCGACTGGATGTATTTAT+GGG | 0.457387 | 4.3:-36173899 | MS.gene056668:CDS |
| TTCATCAGCATTTGTAACAT+TGG | 0.466713 | 4.3:-36174124 | MS.gene056668:CDS |
| TAGCAAGCCAGAGAGGATCT+TGG | 0.476050 | 4.3:+36173701 | None:intergenic |
| ATGATCCCCAAGATCCTCTC+TGG | 0.492077 | 4.3:-36173708 | MS.gene056668:CDS |
| ACGTAAAATCAGTGCCTTCA+GGG | 0.505273 | 4.3:+36173674 | None:intergenic |
| TCAGTTTACGATGTTACCAT+TGG | 0.507137 | 4.3:-36172842 | MS.gene056668:intron |
| GAGGGACCTCCCTGCTGTGA+AGG | 0.507648 | 4.3:-36172612 | MS.gene056668:CDS |
| CAAACAGGTACAAAAGCCCT+TGG | 0.513559 | 4.3:+36173200 | None:intergenic |
| TCATCCCAGTGGAAAGGAAG+TGG | 0.514537 | 4.3:-36173774 | MS.gene056668:CDS |
| CTTGGACAATGTATTTGGAG+TGG | 0.522752 | 4.3:-36172795 | MS.gene056668:CDS |
| ATGGGACCTTGCGTTGCGGA+AGG | 0.532796 | 4.3:-36173881 | MS.gene056668:CDS |
| AGATGTTGGGATACAGTGGA+TGG | 0.536671 | 4.3:+36172736 | None:intergenic |
| ACATCCAGTCGACTTCAGTT+CGG | 0.547137 | 4.3:+36173908 | None:intergenic |
| AGGGACCTCCCTGCTGTGAA+GGG | 0.552077 | 4.3:-36172611 | MS.gene056668:CDS |
| GTGACAGTGATTATATTGAC+TGG | 0.553389 | 4.3:-36172575 | MS.gene056668:CDS |
| ATATTGTTCCTTCGAGAGAA+CGG | 0.553559 | 4.3:-36173951 | MS.gene056668:CDS |
| TGTCCAAGAAAGACGGGCAG+CGG | 0.556324 | 4.3:+36172810 | None:intergenic |
| ATCACCGAACTGAAGTCGAC+TGG | 0.565240 | 4.3:-36173912 | MS.gene056668:CDS |
| TGGGACCTTGCGTTGCGGAA+GGG | 0.565717 | 4.3:-36173880 | MS.gene056668:CDS |
| ATACATTGTCCAAGAAAGAC+GGG | 0.565950 | 4.3:+36172804 | None:intergenic |
| TTGCGAGGCTCTCTAAATGC+AGG | 0.568276 | 4.3:-36173171 | MS.gene056668:intron |
| TGCATCCCTTCCGCAACGCA+AGG | 0.570372 | 4.3:+36173875 | None:intergenic |
| AGCACAATCCGTTCTCTCGA+AGG | 0.580059 | 4.3:+36173943 | None:intergenic |
| AATACATTGTCCAAGAAAGA+CGG | 0.589227 | 4.3:+36172803 | None:intergenic |
| CGAATGTTGAAATATGTAGC+CGG | 0.590553 | 4.3:+36172479 | None:intergenic |
| CTTCAGATGTTGGGATACAG+TGG | 0.606141 | 4.3:+36172732 | None:intergenic |
| ACCTGTTTGCAAGAGTTGCG+AGG | 0.606957 | 4.3:-36173186 | MS.gene056668:CDS |
| TTAAAATGCCCTTCACAGCA+GGG | 0.607039 | 4.3:+36172603 | None:intergenic |
| TAGAGTTCATCCCAGTGGAA+AGG | 0.609644 | 4.3:-36173780 | MS.gene056668:CDS |
| GCAGATATGGATATGAACTT+CGG | 0.613202 | 4.3:+36172766 | None:intergenic |
| CATCCCAGTGGAAAGGAAGT+GGG | 0.613686 | 4.3:-36173773 | MS.gene056668:CDS |
| GGATACAGTGGATGGGAAAG+CGG | 0.620018 | 4.3:+36172744 | None:intergenic |
| ATATGGATATGAACTTCGGA+AGG | 0.623808 | 4.3:+36172770 | None:intergenic |
| GCGTTGCGGAAGGGATGCAT+TGG | 0.626115 | 4.3:-36173871 | MS.gene056668:CDS |
| TCCTGATCAAGCAAAAGAGA+GGG | 0.626456 | 4.3:-36172630 | MS.gene056668:CDS |
| GGGAAAATAGCAAGCCAGAG+AGG | 0.628084 | 4.3:+36173694 | None:intergenic |
| TTCCTGATCAAGCAAAAGAG+AGG | 0.628899 | 4.3:-36172631 | MS.gene056668:CDS |
| GCAGCGGTATTTGTAGCCAA+TGG | 0.634421 | 4.3:+36172826 | None:intergenic |
| AAAACTCCAAGAATGGGTTG+TGG | 0.641853 | 4.3:+36172455 | None:intergenic |
| GATGTTGGGATACAGTGGAT+GGG | 0.645947 | 4.3:+36172737 | None:intergenic |
| GCAAGCCAGAGAGGATCTTG+GGG | 0.667193 | 4.3:+36173703 | None:intergenic |
| ATTTATGGGACCTTGCGTTG+CGG | 0.679165 | 4.3:-36173885 | MS.gene056668:CDS |
| GTAAAGTTTAAACCAGACAG+AGG | 0.706270 | 4.3:+36172529 | None:intergenic |
| CATACTAGAGTTCATCCCAG+TGG | 0.720097 | 4.3:-36173785 | MS.gene056668:CDS |
| AAATGCCCTTCACAGCAGGG+AGG | 0.725667 | 4.3:+36172606 | None:intergenic |
| CTGAAGATGAAATTTCTACG+TGG | 0.745759 | 4.3:-36172715 | MS.gene056668:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGAAAATCTATTAAAAAG+TGG | + | chr4.3:36173025-36173044 | None:intergenic | 15.0% |
| !!! | TTGATTTTTTCAAATAGAAA+GGG | + | chr4.3:36172673-36172692 | None:intergenic | 15.0% |
| !! | CTTAAAAAATTGTCTGAATT+TGG | + | chr4.3:36173075-36173094 | None:intergenic | 20.0% |
| !!! | AGTAAAACATTTTTCAGAAT+CGG | + | chr4.3:36173442-36173461 | None:intergenic | 20.0% |
| !!! | CTTTACAATTTTCAATTTCA+AGG | - | chr4.3:36174011-36174030 | MS.gene056668:CDS | 20.0% |
| !!! | GTTGATTTTTTCAAATAGAA+AGG | + | chr4.3:36172674-36172693 | None:intergenic | 20.0% |
| ! | AAATTTCATCTTCAGATGTT+GGG | + | chr4.3:36173950-36173969 | None:intergenic | 25.0% |
| ! | AACCAATAATTGCATATACA+TGG | + | chr4.3:36173548-36173567 | None:intergenic | 25.0% |
| ! | AATGATATCAGATTGATAGA+AGG | - | chr4.3:36173739-36173758 | MS.gene056668:CDS | 25.0% |
| ! | AGATTGATAGAAGGTTAAAA+AGG | - | chr4.3:36173748-36173767 | MS.gene056668:CDS | 25.0% |
| ! | ATCTTAAAAACTCCAAGAAT+GGG | + | chr4.3:36174224-36174243 | None:intergenic | 25.0% |
| ! | CACAATTCAAATAGTTAATG+AGG | - | chr4.3:36173102-36173121 | MS.gene056668:intron | 25.0% |
| ! | TACAAGAAGAAAATGATAGA+TGG | + | chr4.3:36173369-36173388 | None:intergenic | 25.0% |
| ! | TTCCATGTATATGCAATTAT+TGG | - | chr4.3:36173543-36173562 | MS.gene056668:intron | 25.0% |
| AAACCCCTTAGAAATCTAAA+AGG | + | chr4.3:36172505-36172524 | None:intergenic | 30.0% | |
| AAAGCAACTTGTCCTTAAAT+CGG | + | chr4.3:36173995-36174014 | None:intergenic | 30.0% | |
| AATACATTGTCCAAGAAAGA+CGG | + | chr4.3:36173870-36173889 | None:intergenic | 30.0% | |
| CATCTTAAAAACTCCAAGAA+TGG | + | chr4.3:36174225-36174244 | None:intergenic | 30.0% | |
| GAAATTTCATCTTCAGATGT+TGG | + | chr4.3:36173951-36173970 | None:intergenic | 30.0% | |
| TAATCCTTTGGTTGAGTATA+AGG | + | chr4.3:36173604-36173623 | None:intergenic | 30.0% | |
| TCTTTCTTGGACAATGTATT+TGG | - | chr4.3:36173870-36173889 | MS.gene056668:CDS | 30.0% | |
| TTCATCAGCATTTGTAACAT+TGG | - | chr4.3:36172546-36172565 | MS.gene056668:CDS | 30.0% | |
| ! | AGCTCCTTTTAGATTTCTAA+GGG | - | chr4.3:36172498-36172517 | MS.gene056668:CDS | 30.0% |
| ! | GGAATCATATGATTTTGTCA+CGG | - | chr4.3:36173199-36173218 | MS.gene056668:CDS | 30.0% |
| ! | TAGCTCCTTTTAGATTTCTA+AGG | - | chr4.3:36172497-36172516 | MS.gene056668:CDS | 30.0% |
| ! | TTGATGAGACTTCCAATTTT+TGG | - | chr4.3:36172850-36172869 | MS.gene056668:intron | 30.0% |
| ! | TTTGTAACATTGGTGTTCTT+CGG | - | chr4.3:36172556-36172575 | MS.gene056668:CDS | 30.0% |
| !! | TTTTAGATTTCTAAGGGGTT+TGG | - | chr4.3:36172504-36172523 | MS.gene056668:CDS | 30.0% |
| !!! | AAAACAACGTCGTTTTTCTT+TGG | - | chr4.3:36172628-36172647 | MS.gene056668:CDS | 30.0% |
| AAAGTCACCATTCGAAGTAT+GGG | + | chr4.3:36173259-36173278 | None:intergenic | 35.0% | |
| AAGACTAAAGTTGTGTTCTC+TGG | - | chr4.3:36172694-36172713 | MS.gene056668:CDS | 35.0% | |
| AAGTCGACTGGATGTATTTA+TGG | - | chr4.3:36172770-36172789 | MS.gene056668:CDS | 35.0% | |
| AGTCGACTGGATGTATTTAT+GGG | - | chr4.3:36172771-36172790 | MS.gene056668:CDS | 35.0% | |
| ATACATTGTCCAAGAAAGAC+GGG | + | chr4.3:36173869-36173888 | None:intergenic | 35.0% | |
| ATATGGATATGAACTTCGGA+AGG | + | chr4.3:36173903-36173922 | None:intergenic | 35.0% | |
| ATATTGTTCCTTCGAGAGAA+CGG | - | chr4.3:36172719-36172738 | MS.gene056668:CDS | 35.0% | |
| CCTTCGAAGTCAAAAATATG+CGG | - | chr4.3:36173402-36173421 | MS.gene056668:intron | 35.0% | |
| CGAATGTTGAAATATGTAGC+CGG | + | chr4.3:36174194-36174213 | None:intergenic | 35.0% | |
| CGGCTACATATTTCAACATT+CGG | - | chr4.3:36174192-36174211 | MS.gene056668:CDS | 35.0% | |
| CTGAAGATGAAATTTCTACG+TGG | - | chr4.3:36173955-36173974 | MS.gene056668:CDS | 35.0% | |
| GATGGATAGATTCCGATTTA+AGG | - | chr4.3:36173980-36173999 | MS.gene056668:CDS | 35.0% | |
| GCAGATATGGATATGAACTT+CGG | + | chr4.3:36173907-36173926 | None:intergenic | 35.0% | |
| GTAAAGTTTAAACCAGACAG+AGG | + | chr4.3:36174144-36174163 | None:intergenic | 35.0% | |
| GTAGTCAGGTTTCTTGTATT+TGG | - | chr4.3:36173178-36173197 | MS.gene056668:CDS | 35.0% | |
| GTGACAGTGATTATATTGAC+TGG | - | chr4.3:36174095-36174114 | MS.gene056668:CDS | 35.0% | |
| TAGACCTTATACTCAACCAA+AGG | - | chr4.3:36173597-36173616 | MS.gene056668:intron | 35.0% | |
| TCAGTTTACGATGTTACCAT+TGG | - | chr4.3:36173828-36173847 | MS.gene056668:CDS | 35.0% | |
| TGAAATGCCCAACCAAAAAT+TGG | + | chr4.3:36172865-36172884 | None:intergenic | 35.0% | |
| TGAAATTTCTACGTGGTTGA+TGG | - | chr4.3:36173962-36173981 | MS.gene056668:CDS | 35.0% | |
| TGCAATGATGCATAATCCTT+TGG | + | chr4.3:36173616-36173635 | None:intergenic | 35.0% | |
| ! | GCTCCTTTTAGATTTCTAAG+GGG | - | chr4.3:36172499-36172518 | MS.gene056668:CDS | 35.0% |
| !! | TTTTTAGCATCAGTTACAGC+AGG | - | chr4.3:36172605-36172624 | MS.gene056668:CDS | 35.0% |
| !!! | GAGACTTCCAATTTTTGGTT+GGG | - | chr4.3:36172855-36172874 | MS.gene056668:intron | 35.0% |
| !!! | TGAGACTTCCAATTTTTGGT+TGG | - | chr4.3:36172854-36172873 | MS.gene056668:intron | 35.0% |
| AAAAATATGCGGCTGAACAC+GGG | - | chr4.3:36173413-36173432 | MS.gene056668:intron | 40.0% | |
| ACGCGTGTAACTTCAAAACT+TGG | - | chr4.3:36172457-36172476 | MS.gene056668:CDS | 40.0% | |
| ACGTAAAATCAGTGCCTTCA+GGG | + | chr4.3:36172999-36173018 | None:intergenic | 40.0% | |
| CAAAAATATGCGGCTGAACA+CGG | - | chr4.3:36173412-36173431 | MS.gene056668:intron | 40.0% | |
| CAAAGTCACCATTCGAAGTA+TGG | + | chr4.3:36173260-36173279 | None:intergenic | 40.0% | |
| CTTGGACAATGTATTTGGAG+TGG | - | chr4.3:36173875-36173894 | MS.gene056668:CDS | 40.0% | |
| GATGGCTAAGAATCAGCAAA+AGG | + | chr4.3:36173351-36173370 | None:intergenic | 40.0% | |
| TACGTAAAATCAGTGCCTTC+AGG | + | chr4.3:36173000-36173019 | None:intergenic | 40.0% | |
| TCCTGATCAAGCAAAAGAGA+GGG | - | chr4.3:36174040-36174059 | MS.gene056668:CDS | 40.0% | |
| TTAAAATGCCCTTCACAGCA+GGG | + | chr4.3:36174070-36174089 | None:intergenic | 40.0% | |
| TTCCTGATCAAGCAAAAGAG+AGG | - | chr4.3:36174039-36174058 | MS.gene056668:CDS | 40.0% | |
| TTGGTACTTGGCTAACTTTG+TGG | - | chr4.3:36172647-36172666 | MS.gene056668:CDS | 40.0% | |
| ! | CTTTTGCTTGATCAGGAAAC+TGG | + | chr4.3:36174037-36174056 | None:intergenic | 40.0% |
| ! | GTTTTACTGCCGAAAACCAA+GGG | - | chr4.3:36173454-36173473 | MS.gene056668:intron | 40.0% |
| ! | TGTTTTACTGCCGAAAACCA+AGG | - | chr4.3:36173453-36173472 | MS.gene056668:intron | 40.0% |
| ! | TTTAAAATGCCCTTCACAGC+AGG | + | chr4.3:36174071-36174090 | None:intergenic | 40.0% |
| !! | AAAACTCCAAGAATGGGTTG+TGG | + | chr4.3:36174218-36174237 | None:intergenic | 40.0% |
| !! | GTACAAAAGCCCTTGGTTTT+CGG | + | chr4.3:36173466-36173485 | None:intergenic | 40.0% |
| !!! | ACTTCACTTTTTCCTCTGTC+TGG | - | chr4.3:36174129-36174148 | MS.gene056668:CDS | 40.0% |
| !!! | CCGCATATTTTTGACTTCGA+AGG | + | chr4.3:36173405-36173424 | None:intergenic | 40.0% |
| !!! | CGTCGTTTTTCTTTGGTACT+TGG | - | chr4.3:36172635-36172654 | MS.gene056668:CDS | 40.0% |
| AGATGTTGGGATACAGTGGA+TGG | + | chr4.3:36173937-36173956 | None:intergenic | 45.0% | |
| ATTTATGGGACCTTGCGTTG+CGG | - | chr4.3:36172785-36172804 | MS.gene056668:CDS | 45.0% | |
| CAAACAGGTACAAAAGCCCT+TGG | + | chr4.3:36173473-36173492 | None:intergenic | 45.0% | |
| CATACTAGAGTTCATCCCAG+TGG | - | chr4.3:36172885-36172904 | MS.gene056668:intron | 45.0% | |
| CTTCAGATGTTGGGATACAG+TGG | + | chr4.3:36173941-36173960 | None:intergenic | 45.0% | |
| GATGTTGGGATACAGTGGAT+GGG | + | chr4.3:36173936-36173955 | None:intergenic | 45.0% | |
| GCTATCACCCATACTTCGAA+TGG | - | chr4.3:36173249-36173268 | MS.gene056668:CDS | 45.0% | |
| GCTTATGATCATCGTGATGC+TGG | - | chr4.3:36173151-36173170 | MS.gene056668:intron | 45.0% | |
| GTCTGTAGTCGTCGCTTATT+TGG | - | chr4.3:36174166-36174185 | MS.gene056668:CDS | 45.0% | |
| TAGAGTTCATCCCAGTGGAA+AGG | - | chr4.3:36172890-36172909 | MS.gene056668:intron | 45.0% | |
| ! | ACATCCAGTCGACTTCAGTT+CGG | + | chr4.3:36172765-36172784 | None:intergenic | 45.0% |
| ! | AGTCGTCGCTTATTTGGTTC+CGG | - | chr4.3:36174172-36174191 | MS.gene056668:CDS | 45.0% |
| ! | TCCCTCTCTTTTGCTTGATC+AGG | + | chr4.3:36174044-36174063 | None:intergenic | 45.0% |
| ! | TTTGGTGTGTCTATTGGTGC+TGG | - | chr4.3:36172522-36172541 | MS.gene056668:CDS | 45.0% |
| !! | AAGGGGTTTGGTGTGTCTAT+TGG | - | chr4.3:36172516-36172535 | MS.gene056668:CDS | 45.0% |
| !! | TTTGACTTCGAAGGCACTTC+TGG | + | chr4.3:36173396-36173415 | None:intergenic | 45.0% |
| !!! | TGGCTTGCTATTTTCCCTGA+AGG | - | chr4.3:36172982-36173001 | MS.gene056668:intron | 45.0% |
| ACCTGTTTGCAAGAGTTGCG+AGG | - | chr4.3:36173484-36173503 | MS.gene056668:intron | 50.0% | |
| AGCAAGCCAGAGAGGATCTT+GGG | + | chr4.3:36172971-36172990 | None:intergenic | 50.0% | |
| AGCACAATCCGTTCTCTCGA+AGG | + | chr4.3:36172730-36172749 | None:intergenic | 50.0% | |
| ATCACCGAACTGAAGTCGAC+TGG | - | chr4.3:36172758-36172777 | MS.gene056668:CDS | 50.0% | |
| ATGATCCCCAAGATCCTCTC+TGG | - | chr4.3:36172962-36172981 | MS.gene056668:intron | 50.0% | |
| ATTCGGCCACAACCCATTCT+TGG | - | chr4.3:36174209-36174228 | MS.gene056668:CDS | 50.0% | |
| CATCCCAGTGGAAAGGAAGT+GGG | - | chr4.3:36172897-36172916 | MS.gene056668:intron | 50.0% | |
| CTTCCCACTTCCTTTCCACT+GGG | + | chr4.3:36172903-36172922 | None:intergenic | 50.0% | |
| GAGGCTCTCTAAATGCAGGT+TGG | - | chr4.3:36173503-36173522 | MS.gene056668:intron | 50.0% | |
| GCAGCGGTATTTGTAGCCAA+TGG | + | chr4.3:36173847-36173866 | None:intergenic | 50.0% | |
| GGATACAGTGGATGGGAAAG+CGG | + | chr4.3:36173929-36173948 | None:intergenic | 50.0% | |
| GGGAAAATAGCAAGCCAGAG+AGG | + | chr4.3:36172979-36172998 | None:intergenic | 50.0% | |
| GTGATGCTGGAGAAGTAGTC+AGG | - | chr4.3:36173164-36173183 | MS.gene056668:intron | 50.0% | |
| TAGCAAGCCAGAGAGGATCT+TGG | + | chr4.3:36172972-36172991 | None:intergenic | 50.0% | |
| TCATCCCAGTGGAAAGGAAG+TGG | - | chr4.3:36172896-36172915 | MS.gene056668:intron | 50.0% | |
| TTGCGAGGCTCTCTAAATGC+AGG | - | chr4.3:36173499-36173518 | MS.gene056668:intron | 50.0% | |
| AAATGCCCTTCACAGCAGGG+AGG | + | chr4.3:36174067-36174086 | None:intergenic | 55.0% | |
| ATACCGCTGCCCGTCTTTCT+TGG | - | chr4.3:36173857-36173876 | MS.gene056668:CDS | 55.0% | |
| GCAAGCCAGAGAGGATCTTG+GGG | + | chr4.3:36172970-36172989 | None:intergenic | 55.0% | |
| GCCTCGCAACTCTTGCAAAC+AGG | + | chr4.3:36173488-36173507 | None:intergenic | 55.0% | |
| GCTTCCCACTTCCTTTCCAC+TGG | + | chr4.3:36172904-36172923 | None:intergenic | 55.0% | |
| GGATGGGAAAGCGGCAGATA+TGG | + | chr4.3:36173920-36173939 | None:intergenic | 55.0% | |
| TGTCCAAGAAAGACGGGCAG+CGG | + | chr4.3:36173863-36173882 | None:intergenic | 55.0% | |
| AGGGACCTCCCTGCTGTGAA+GGG | - | chr4.3:36174059-36174078 | MS.gene056668:CDS | 60.0% | |
| ATGGGACCTTGCGTTGCGGA+AGG | - | chr4.3:36172789-36172808 | MS.gene056668:CDS | 60.0% | |
| GCGTTGCGGAAGGGATGCAT+TGG | - | chr4.3:36172799-36172818 | MS.gene056668:CDS | 60.0% | |
| TGCATCCCTTCCGCAACGCA+AGG | + | chr4.3:36172798-36172817 | None:intergenic | 60.0% | |
| TGGGACCTTGCGTTGCGGAA+GGG | - | chr4.3:36172790-36172809 | MS.gene056668:CDS | 60.0% | |
| GAGGGACCTCCCTGCTGTGA+AGG | - | chr4.3:36174058-36174077 | MS.gene056668:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 36172445 | 36174247 | 36172445 | ID=MS.gene056668 |
| chr4.3 | mRNA | 36172445 | 36174247 | 36172445 | ID=MS.gene056668.t1;Parent=MS.gene056668 |
| chr4.3 | exon | 36173676 | 36174247 | 36173676 | ID=MS.gene056668.t1.exon1;Parent=MS.gene056668.t1 |
| chr4.3 | CDS | 36173676 | 36174247 | 36173676 | ID=cds.MS.gene056668.t1;Parent=MS.gene056668.t1 |
| chr4.3 | exon | 36173172 | 36173302 | 36173172 | ID=MS.gene056668.t1.exon2;Parent=MS.gene056668.t1 |
| chr4.3 | CDS | 36173172 | 36173302 | 36173172 | ID=cds.MS.gene056668.t1;Parent=MS.gene056668.t1 |
| chr4.3 | exon | 36172445 | 36172860 | 36172445 | ID=MS.gene056668.t1.exon3;Parent=MS.gene056668.t1 |
| chr4.3 | CDS | 36172445 | 36172860 | 36172445 | ID=cds.MS.gene056668.t1;Parent=MS.gene056668.t1 |
| Gene Sequence |
| Protein sequence |
