Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003796.t1 | XP_013456372.1 | 97.8 | 372 | 8 | 0 | 1 | 372 | 1 | 372 | 4.10E-213 | 750.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003796.t1 | Q9LHN4 | 63.2 | 356 | 129 | 1 | 18 | 371 | 12 | 367 | 9.2e-137 | 488.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003796.t1 | A0A072UMZ9 | 97.8 | 372 | 8 | 0 | 1 | 372 | 1 | 372 | 3.0e-213 | 750.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene27346 | MS.gene003796 | PPI |
| MS.gene003796 | MS.gene24316 | PPI |
| MS.gene26930 | MS.gene003796 | PPI |
| MS.gene003796 | MS.gene062717 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003796.t1 | MTR_4g069140 | 97.849 | 372 | 8 | 0 | 1 | 372 | 1 | 372 | 0.0 | 753 |
| MS.gene003796.t1 | MTR_1g021925 | 61.580 | 367 | 140 | 1 | 1 | 366 | 1 | 367 | 1.43e-169 | 478 |
| MS.gene003796.t1 | MTR_1g052685 | 37.662 | 231 | 141 | 3 | 98 | 326 | 84 | 313 | 1.01e-47 | 166 |
| MS.gene003796.t1 | MTR_7g092280 | 32.661 | 248 | 164 | 2 | 96 | 340 | 82 | 329 | 4.21e-45 | 159 |
| MS.gene003796.t1 | MTR_2g097980 | 36.946 | 203 | 116 | 2 | 96 | 298 | 82 | 272 | 4.55e-41 | 148 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003796.t1 | AT3G18850 | 63.202 | 356 | 129 | 1 | 18 | 371 | 12 | 367 | 2.39e-176 | 495 |
| MS.gene003796.t1 | AT3G18850 | 63.202 | 356 | 129 | 1 | 18 | 371 | 12 | 367 | 2.39e-176 | 495 |
| MS.gene003796.t1 | AT3G18850 | 63.202 | 356 | 129 | 1 | 18 | 371 | 12 | 367 | 2.39e-176 | 495 |
| MS.gene003796.t1 | AT3G18850 | 63.202 | 356 | 129 | 1 | 18 | 371 | 12 | 367 | 2.39e-176 | 495 |
| MS.gene003796.t1 | AT3G18850 | 63.303 | 327 | 118 | 1 | 47 | 371 | 18 | 344 | 5.80e-162 | 458 |
| MS.gene003796.t1 | AT1G75020 | 60.446 | 359 | 139 | 2 | 14 | 371 | 13 | 369 | 1.12e-157 | 448 |
| MS.gene003796.t1 | AT1G75020 | 60.446 | 359 | 139 | 2 | 14 | 371 | 13 | 369 | 1.12e-157 | 448 |
| MS.gene003796.t1 | AT3G18850 | 56.818 | 220 | 93 | 1 | 154 | 371 | 17 | 236 | 5.62e-94 | 281 |
| MS.gene003796.t1 | AT3G57650 | 36.402 | 239 | 148 | 2 | 97 | 331 | 82 | 320 | 2.51e-48 | 168 |
| MS.gene003796.t1 | AT1G51260 | 30.380 | 316 | 208 | 7 | 28 | 337 | 12 | 321 | 2.29e-40 | 147 |
Find 83 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATGAGACTTCCAATATT+TGG | 0.194558 | 4.2:-37548253 | MS.gene003796:CDS |
| TCTTTCTTGGATAATGTCTT+TGG | 0.210666 | 4.2:-37547035 | MS.gene003796:CDS |
| GATGGATAGATTCCGGTTTA+AGG | 0.243053 | 4.2:-37546925 | MS.gene003796:CDS |
| ATACCGCTGCCCGTCTTTCT+TGG | 0.247689 | 4.2:-37547048 | MS.gene003796:CDS |
| TACCTGTTTGCAGGAGTTGC+AGG | 0.273828 | 4.2:-37547620 | MS.gene003796:CDS |
| AGGTCGACTGGATGTACTTA+TGG | 0.277836 | 4.2:-37548333 | MS.gene003796:CDS |
| ATCTGTAGTCGTCGCTTATT+TGG | 0.278783 | 4.2:-37546739 | MS.gene003796:CDS |
| CTTTCTTGGATAATGTCTTT+GGG | 0.280743 | 4.2:-37547034 | MS.gene003796:CDS |
| TACGTAAAATCAGTGCCTTC+AGG | 0.315013 | 4.2:+37548106 | None:intergenic |
| TGAAATGCCCAACCAAATAT+TGG | 0.325358 | 4.2:+37548241 | None:intergenic |
| CGAAATTTCCACGTGGTTGA+TGG | 0.327671 | 4.2:-37546943 | MS.gene003796:CDS |
| TAGCCAAGTACCAAAGAAAA+AGG | 0.330408 | 4.2:+37548465 | None:intergenic |
| ATTCGGCCACAGCCCATTCT+TGG | 0.338001 | 4.2:-37546696 | MS.gene003796:CDS |
| GCTTCCCACTTCCTTTCCAC+TGG | 0.362237 | 4.2:+37548202 | None:intergenic |
| TTTGGTGTGTCTACTGGTGC+TGG | 0.372003 | 4.2:-37548581 | MS.gene003796:CDS |
| AAACCCCTCAGAAATCTAAA+AGG | 0.391869 | 4.2:+37548601 | None:intergenic |
| CGGCTACATATTTCAACATT+CGG | 0.392577 | 4.2:-37546713 | MS.gene003796:CDS |
| GAGGGGTTTGGTGTGTCTAC+TGG | 0.392678 | 4.2:-37548587 | MS.gene003796:CDS |
| CGTGGTTGATGGATAGATTC+CGG | 0.394727 | 4.2:-37546932 | MS.gene003796:CDS |
| AGTCGTCGCTTATTTGGTTC+CGG | 0.394861 | 4.2:-37546733 | MS.gene003796:CDS |
| AGCAAGCCAGAGAGGATCTT+GGG | 0.400056 | 4.2:+37548135 | None:intergenic |
| TTTAAAATGCCCTTCACAGC+AGG | 0.401277 | 4.2:+37546837 | None:intergenic |
| TTGGTACTTGGCTAACTTTG+TGG | 0.403348 | 4.2:-37548456 | MS.gene003796:CDS |
| TTTGTAACATTGGTGTTCTT+CGG | 0.407274 | 4.2:-37548547 | MS.gene003796:CDS |
| GAAATTTCGTCTTCGGATGT+CGG | 0.426815 | 4.2:+37546957 | None:intergenic |
| GAGACTTCCAATATTTGGTT+GGG | 0.432322 | 4.2:-37548248 | MS.gene003796:CDS |
| CTTCCCACTTCCTTTCCACT+GGG | 0.434035 | 4.2:+37548203 | None:intergenic |
| AAGACTAAAGTTGTGTTCTC+TGG | 0.436607 | 4.2:-37548409 | MS.gene003796:CDS |
| GGTCGACTGGATGTACTTAT+GGG | 0.448277 | 4.2:-37548332 | MS.gene003796:CDS |
| ATCACCGAACCGAGGTCGAC+TGG | 0.456911 | 4.2:-37548345 | MS.gene003796:CDS |
| ACGCGTGTAACTTCAAAACT+TGG | 0.456940 | 4.2:-37548646 | MS.gene003796:CDS |
| AAATTTCGTCTTCGGATGTC+GGG | 0.462095 | 4.2:+37546958 | None:intergenic |
| AAAGCAACTTGTCCTTAAAC+CGG | 0.465942 | 4.2:+37546913 | None:intergenic |
| TTCATCAGCATTTGTAACAT+TGG | 0.466713 | 4.2:-37548557 | MS.gene003796:CDS |
| CCACGTGGAAATTTCGTCTT+CGG | 0.466936 | 4.2:+37546950 | None:intergenic |
| TAGCAAGCCAGAGAGGATCT+TGG | 0.476050 | 4.2:+37548134 | None:intergenic |
| GCCCTGCAACTCCTGCAAAC+AGG | 0.480018 | 4.2:+37547618 | None:intergenic |
| CTTGGATAATGTCTTTGGGG+TGG | 0.485947 | 4.2:-37547030 | MS.gene003796:CDS |
| ATGATCCCCAAGATCCTCTC+TGG | 0.492077 | 4.2:-37548141 | MS.gene003796:CDS |
| GGATGTCGGGATACAATCAA+TGG | 0.495045 | 4.2:+37546971 | None:intergenic |
| ACATCCAGTCGACCTCGGTT+CGG | 0.503613 | 4.2:+37548341 | None:intergenic |
| ACGTAAAATCAGTGCCTTCA+GGG | 0.505273 | 4.2:+37548107 | None:intergenic |
| GAGGGACCTCCCTGCTGTGA+AGG | 0.507648 | 4.2:-37546847 | MS.gene003796:CDS |
| TGAGACTTCCAATATTTGGT+TGG | 0.511013 | 4.2:-37548249 | MS.gene003796:CDS |
| TCAGTTTACGATGTTACCAT+TGG | 0.514369 | 4.2:-37547077 | MS.gene003796:intron |
| TCATCCCAGTGGAAAGGAAG+TGG | 0.514537 | 4.2:-37548207 | MS.gene003796:CDS |
| ACCTGTTTGCAGGAGTTGCA+GGG | 0.516638 | 4.2:-37547619 | MS.gene003796:CDS |
| ATGGGACCTTGCGTTGCGGA+AGG | 0.525426 | 4.2:-37548314 | MS.gene003796:CDS |
| CAAACAGGTACAAAAGCCCT+TGG | 0.550019 | 4.2:+37547633 | None:intergenic |
| AGGGACCTCCCTGCTGTGAA+GGG | 0.552077 | 4.2:-37546846 | MS.gene003796:CDS |
| GTGACAGTGATTATATTGAC+TGG | 0.553389 | 4.2:-37546810 | MS.gene003796:CDS |
| ATATTGTTCCTTCGAGAGAA+CGG | 0.553559 | 4.2:-37548384 | MS.gene003796:CDS |
| AGACATTATCCAAGAAAGAC+GGG | 0.554756 | 4.2:+37547039 | None:intergenic |
| TATCCAAGAAAGACGGGCAG+CGG | 0.556324 | 4.2:+37547045 | None:intergenic |
| TGCATCCCTTCCGCAACGCA+AGG | 0.570372 | 4.2:+37548308 | None:intergenic |
| TTGCAGGGCTCTCTAAATGC+AGG | 0.570715 | 4.2:-37547604 | MS.gene003796:intron |
| GATGTCGGGATACAATCAAT+GGG | 0.572512 | 4.2:+37546972 | None:intergenic |
| TGGGACCTTGCGTTGCGGAA+GGG | 0.572605 | 4.2:-37548313 | MS.gene003796:CDS |
| AAGACATTATCCAAGAAAGA+CGG | 0.588416 | 4.2:+37547038 | None:intergenic |
| TTTCTTGGATAATGTCTTTG+GGG | 0.589356 | 4.2:-37547033 | MS.gene003796:CDS |
| CGAATGTTGAAATATGTAGC+CGG | 0.590553 | 4.2:+37546714 | None:intergenic |
| AGTACAATCCGTTCTCTCGA+AGG | 0.603961 | 4.2:+37548376 | None:intergenic |
| GCAGATATGAATATGAACTT+CGG | 0.604811 | 4.2:+37547001 | None:intergenic |
| TTAAAATGCCCTTCACAGCA+GGG | 0.607039 | 4.2:+37546838 | None:intergenic |
| TAGAGTTCATCCCAGTGGAA+AGG | 0.609644 | 4.2:-37548213 | MS.gene003796:CDS |
| CATCCCAGTGGAAAGGAAGT+GGG | 0.613686 | 4.2:-37548206 | MS.gene003796:CDS |
| AAAACTCCAAGAATGGGCTG+TGG | 0.620901 | 4.2:+37546690 | None:intergenic |
| GCGTTGCGGAAGGGATGCAT+TGG | 0.626115 | 4.2:-37548304 | MS.gene003796:CDS |
| TCCTGATCAAGCAAAAGAGA+GGG | 0.626456 | 4.2:-37546865 | MS.gene003796:CDS |
| GGGAAAATAGCAAGCCAGAG+AGG | 0.628084 | 4.2:+37548127 | None:intergenic |
| TTCCTGATCAAGCAAAAGAG+AGG | 0.628899 | 4.2:-37546866 | MS.gene003796:CDS |
| ATATGAATATGAACTTCGGA+AGG | 0.630761 | 4.2:+37547005 | None:intergenic |
| GCAGCGGTATTTGTAGCCAA+TGG | 0.634421 | 4.2:+37547061 | None:intergenic |
| GGATACAATCAATGGGAAAG+CGG | 0.648617 | 4.2:+37546979 | None:intergenic |
| TAAGTACATCCAGTCGACCT+CGG | 0.657363 | 4.2:+37548336 | None:intergenic |
| ACTTATGGGACCTTGCGTTG+CGG | 0.658172 | 4.2:-37548318 | MS.gene003796:CDS |
| GCAAGCCAGAGAGGATCTTG+GGG | 0.667193 | 4.2:+37548136 | None:intergenic |
| GATTGCAAATCACCGAACCG+AGG | 0.687375 | 4.2:-37548353 | MS.gene003796:CDS |
| ATAAAGTTTAAACCAGACAG+AGG | 0.698254 | 4.2:+37546764 | None:intergenic |
| GAATCTATCCATCAACCACG+TGG | 0.709825 | 4.2:+37546935 | None:intergenic |
| CATACTAGAGTTCATCCCAG+TGG | 0.720097 | 4.2:-37548218 | MS.gene003796:CDS |
| AAATGCCCTTCACAGCAGGG+AGG | 0.725667 | 4.2:+37546841 | None:intergenic |
| CCGAAGACGAAATTTCCACG+TGG | 0.754259 | 4.2:-37546950 | MS.gene003796:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAAAAATTGTCTGAATT+TGG | + | chr4.2:37547310-37547329 | None:intergenic | 15.0% |
| !!! | TTGATTTTTTCAAATAGAAA+GGG | + | chr4.2:37546908-37546927 | None:intergenic | 15.0% |
| !! | AATGAGAATCTATTAAAAAG+CGG | + | chr4.2:37547260-37547279 | None:intergenic | 20.0% |
| !! | CTATTAAAATTGTTGAAGTA+TGG | - | chr4.2:37547989-37548008 | MS.gene003796:intron | 20.0% |
| !!! | ACTTCAACAATTTTAATAGT+GGG | + | chr4.2:37547988-37548007 | None:intergenic | 20.0% |
| !!! | AGTAAAACATTTTTCAGAAT+CGG | + | chr4.2:37547677-37547696 | None:intergenic | 20.0% |
| !!! | ATTGTTTACAGTTTGTTAAT+TGG | - | chr4.2:37547906-37547925 | MS.gene003796:intron | 20.0% |
| !!! | GTTGATTTTTTCAAATAGAA+AGG | + | chr4.2:37546909-37546928 | None:intergenic | 20.0% |
| !!! | TACTTCAACAATTTTAATAG+TGG | + | chr4.2:37547989-37548008 | None:intergenic | 20.0% |
| ! | AATTACTGTGATGAGAATTA+GGG | + | chr4.2:37548082-37548101 | None:intergenic | 25.0% |
| ! | ATCTTAAAAACTCCAAGAAT+GGG | + | chr4.2:37548657-37548676 | None:intergenic | 25.0% |
| ! | GATGGCTAAAAATTATGAAA+AGG | + | chr4.2:37547586-37547605 | None:intergenic | 25.0% |
| ! | GTAGTTAACACAATTCAAAT+AGG | - | chr4.2:37547330-37547349 | MS.gene003796:intron | 25.0% |
| ! | TACAAGAAGAAAATGATAGA+TGG | + | chr4.2:37547604-37547623 | None:intergenic | 25.0% |
| ! | TTCCATGTAGATGTAATTAT+TGG | - | chr4.2:37547777-37547796 | MS.gene003796:intron | 25.0% |
| !! | AATAGATTCTCATTTTGCAT+TGG | - | chr4.2:37547266-37547285 | MS.gene003796:intron | 25.0% |
| !! | AGAATCATATCATTTTGTCA+GGG | - | chr4.2:37547434-37547453 | MS.gene003796:intron | 25.0% |
| !! | ATAGATTCTCATTTTGCATT+GGG | - | chr4.2:37547267-37547286 | MS.gene003796:intron | 25.0% |
| !! | CTTTACAATTTTCAGTTTCA+AGG | - | chr4.2:37548444-37548463 | MS.gene003796:CDS | 25.0% |
| AACGATATCAAATTGATGGA+AGG | - | chr4.2:37547929-37547948 | MS.gene003796:intron | 30.0% | |
| AAGACATTATCCAAGAAAGA+CGG | + | chr4.2:37548303-37548322 | None:intergenic | 30.0% | |
| AATTGATGGAAGGTTAAAAC+AGG | - | chr4.2:37547939-37547958 | MS.gene003796:intron | 30.0% | |
| ATAAAGTTTAAACCAGACAG+AGG | + | chr4.2:37548577-37548596 | None:intergenic | 30.0% | |
| ATAGTTCTTGGATGAGTATA+AGG | + | chr4.2:37547838-37547857 | None:intergenic | 30.0% | |
| ATATGAATATGAACTTCGGA+AGG | + | chr4.2:37548336-37548355 | None:intergenic | 30.0% | |
| CAATTACTGTGATGAGAATT+AGG | + | chr4.2:37548083-37548102 | None:intergenic | 30.0% | |
| CACAATTCAAATAGGTAATG+AGG | - | chr4.2:37547338-37547357 | MS.gene003796:intron | 30.0% | |
| CATCTTAAAAACTCCAAGAA+TGG | + | chr4.2:37548658-37548677 | None:intergenic | 30.0% | |
| CATGGAAAATAAAGAAAGAG+AGG | + | chr4.2:37547764-37547783 | None:intergenic | 30.0% | |
| CTTTCTTGGATAATGTCTTT+GGG | - | chr4.2:37548304-37548323 | MS.gene003796:CDS | 30.0% | |
| GCAGATATGAATATGAACTT+CGG | + | chr4.2:37548340-37548359 | None:intergenic | 30.0% | |
| TAAAACTACTGTCACATACT+TGG | + | chr4.2:37547803-37547822 | None:intergenic | 30.0% | |
| TCTCATCACAGTAATTGAAA+CGG | - | chr4.2:37548086-37548105 | MS.gene003796:intron | 30.0% | |
| TCTTTCTTGGATAATGTCTT+TGG | - | chr4.2:37548303-37548322 | MS.gene003796:CDS | 30.0% | |
| TTCATCAGCATTTGTAACAT+TGG | - | chr4.2:37546781-37546800 | MS.gene003796:CDS | 30.0% | |
| TTGATGAGACTTCCAATATT+TGG | - | chr4.2:37547085-37547104 | MS.gene003796:intron | 30.0% | |
| TTGGAACGATATCAAATTGA+TGG | - | chr4.2:37547925-37547944 | MS.gene003796:intron | 30.0% | |
| TTTCTTGGATAATGTCTTTG+GGG | - | chr4.2:37548305-37548324 | MS.gene003796:CDS | 30.0% | |
| ! | AAAACAACGTCCTTTTTCTT+TGG | - | chr4.2:37546863-37546882 | MS.gene003796:CDS | 30.0% |
| ! | CGATATTTGTTAACGTAGTT+CGG | + | chr4.2:37548153-37548172 | None:intergenic | 30.0% |
| ! | GAGAATCATATCATTTTGTC+AGG | - | chr4.2:37547433-37547452 | MS.gene003796:intron | 30.0% |
| ! | TTTGTAACATTGGTGTTCTT+CGG | - | chr4.2:37546791-37546810 | MS.gene003796:CDS | 30.0% |
| AAACCCCTCAGAAATCTAAA+AGG | + | chr4.2:37546740-37546759 | None:intergenic | 35.0% | |
| AAAGCAACTTGTCCTTAAAC+CGG | + | chr4.2:37548428-37548447 | None:intergenic | 35.0% | |
| AAGACTAAAGTTGTGTTCTC+TGG | - | chr4.2:37546929-37546948 | MS.gene003796:CDS | 35.0% | |
| ACTATCACCCATACTTCAAA+TGG | - | chr4.2:37547484-37547503 | MS.gene003796:intron | 35.0% | |
| AGACATTATCCAAGAAAGAC+GGG | + | chr4.2:37548302-37548321 | None:intergenic | 35.0% | |
| ATATTGTTCCTTCGAGAGAA+CGG | - | chr4.2:37546954-37546973 | MS.gene003796:CDS | 35.0% | |
| CCTTCGAAGTCAAAAATATG+CGG | - | chr4.2:37547637-37547656 | MS.gene003796:CDS | 35.0% | |
| CGAATGTTGAAATATGTAGC+CGG | + | chr4.2:37548627-37548646 | None:intergenic | 35.0% | |
| CGGCTACATATTTCAACATT+CGG | - | chr4.2:37548625-37548644 | MS.gene003796:CDS | 35.0% | |
| GAGACTTCCAATATTTGGTT+GGG | - | chr4.2:37547090-37547109 | MS.gene003796:intron | 35.0% | |
| GGCCAATAATTACATCTACA+TGG | + | chr4.2:37547782-37547801 | None:intergenic | 35.0% | |
| GTGACAGTGATTATATTGAC+TGG | - | chr4.2:37548528-37548547 | MS.gene003796:CDS | 35.0% | |
| TAGCCAAGTACCAAAGAAAA+AGG | + | chr4.2:37546876-37546895 | None:intergenic | 35.0% | |
| TCAGTTTACGATGTTACCAT+TGG | - | chr4.2:37548261-37548280 | MS.gene003796:CDS | 35.0% | |
| TGAAATGCCCAACCAAATAT+TGG | + | chr4.2:37547100-37547119 | None:intergenic | 35.0% | |
| TGAGACTTCCAATATTTGGT+TGG | - | chr4.2:37547089-37547108 | MS.gene003796:intron | 35.0% | |
| ! | AAAGCCACCATTTGAAGTAT+GGG | + | chr4.2:37547494-37547513 | None:intergenic | 35.0% |
| ! | AGCTCCTTTTAGATTTCTGA+GGG | - | chr4.2:37546733-37546752 | MS.gene003796:CDS | 35.0% |
| ! | GTTTTACTGCCAAAAACCAA+GGG | - | chr4.2:37547689-37547708 | MS.gene003796:CDS | 35.0% |
| ! | TAGCTCCTTTTAGATTTCTG+AGG | - | chr4.2:37546732-37546751 | MS.gene003796:CDS | 35.0% |
| ! | TGTTTTACTGCCAAAAACCA+AGG | - | chr4.2:37547688-37547707 | MS.gene003796:CDS | 35.0% |
| !! | TTTTAGATTTCTGAGGGGTT+TGG | - | chr4.2:37546739-37546758 | MS.gene003796:CDS | 35.0% |
| !! | TTTTTAGCATCAGTTACAGC+AGG | - | chr4.2:37546840-37546859 | MS.gene003796:CDS | 35.0% |
| AAAAATATGCGGCTGAACAC+GGG | - | chr4.2:37547648-37547667 | MS.gene003796:CDS | 40.0% | |
| AAATTTCGTCTTCGGATGTC+GGG | + | chr4.2:37548383-37548402 | None:intergenic | 40.0% | |
| AAGAACTATGCATCATTGCG+TGG | - | chr4.2:37547849-37547868 | MS.gene003796:intron | 40.0% | |
| ACGCAATGATGCATAGTTCT+TGG | + | chr4.2:37547850-37547869 | None:intergenic | 40.0% | |
| ACGCGTGTAACTTCAAAACT+TGG | - | chr4.2:37546692-37546711 | MS.gene003796:CDS | 40.0% | |
| ACGTAAAATCAGTGCCTTCA+GGG | + | chr4.2:37547234-37547253 | None:intergenic | 40.0% | |
| ATCACCCATACTTCAAATGG+TGG | - | chr4.2:37547487-37547506 | MS.gene003796:intron | 40.0% | |
| ATCTGTAGTCGTCGCTTATT+TGG | - | chr4.2:37548599-37548618 | MS.gene003796:CDS | 40.0% | |
| ATGATGCTGGAAAAGTAGTC+AGG | - | chr4.2:37547398-37547417 | MS.gene003796:intron | 40.0% | |
| CAAAAATATGCGGCTGAACA+CGG | - | chr4.2:37547647-37547666 | MS.gene003796:CDS | 40.0% | |
| CATACTTCAAATGGTGGCTT+TGG | - | chr4.2:37547493-37547512 | MS.gene003796:intron | 40.0% | |
| GAAATTTCGTCTTCGGATGT+CGG | + | chr4.2:37548384-37548403 | None:intergenic | 40.0% | |
| GATGGATAGATTCCGGTTTA+AGG | - | chr4.2:37548413-37548432 | MS.gene003796:CDS | 40.0% | |
| GATGTCGGGATACAATCAAT+GGG | + | chr4.2:37548369-37548388 | None:intergenic | 40.0% | |
| GGATACAATCAATGGGAAAG+CGG | + | chr4.2:37548362-37548381 | None:intergenic | 40.0% | |
| TACGTAAAATCAGTGCCTTC+AGG | + | chr4.2:37547235-37547254 | None:intergenic | 40.0% | |
| TCCTGATCAAGCAAAAGAGA+GGG | - | chr4.2:37548473-37548492 | MS.gene003796:CDS | 40.0% | |
| TGCTTTGATCATCATGATGC+TGG | - | chr4.2:37547385-37547404 | MS.gene003796:intron | 40.0% | |
| TTAAAATGCCCTTCACAGCA+GGG | + | chr4.2:37548503-37548522 | None:intergenic | 40.0% | |
| TTCCTGATCAAGCAAAAGAG+AGG | - | chr4.2:37548472-37548491 | MS.gene003796:CDS | 40.0% | |
| TTGGTACTTGGCTAACTTTG+TGG | - | chr4.2:37546882-37546901 | MS.gene003796:CDS | 40.0% | |
| ! | CAAAGCCACCATTTGAAGTA+TGG | + | chr4.2:37547495-37547514 | None:intergenic | 40.0% |
| ! | CGTCCTTTTTCTTTGGTACT+TGG | - | chr4.2:37546870-37546889 | MS.gene003796:CDS | 40.0% |
| ! | GCTCCTTTTAGATTTCTGAG+GGG | - | chr4.2:37546734-37546753 | MS.gene003796:CDS | 40.0% |
| ! | TTTAAAATGCCCTTCACAGC+AGG | + | chr4.2:37548504-37548523 | None:intergenic | 40.0% |
| !! | GTACAAAAGCCCTTGGTTTT+TGG | + | chr4.2:37547701-37547720 | None:intergenic | 40.0% |
| !!! | ACTTCACTTTTTCCTCTGTC+TGG | - | chr4.2:37548562-37548581 | MS.gene003796:CDS | 40.0% |
| !!! | CCGCATATTTTTGACTTCGA+AGG | + | chr4.2:37547640-37547659 | None:intergenic | 40.0% |
| AGGTCGACTGGATGTACTTA+TGG | - | chr4.2:37547005-37547024 | MS.gene003796:CDS | 45.0% | |
| AGTACAATCCGTTCTCTCGA+AGG | + | chr4.2:37546965-37546984 | None:intergenic | 45.0% | |
| CAAACAGGTACAAAAGCCCT+TGG | + | chr4.2:37547708-37547727 | None:intergenic | 45.0% | |
| CATACTAGAGTTCATCCCAG+TGG | - | chr4.2:37547120-37547139 | MS.gene003796:intron | 45.0% | |
| CCACGTGGAAATTTCGTCTT+CGG | + | chr4.2:37548391-37548410 | None:intergenic | 45.0% | |
| CGAAATTTCCACGTGGTTGA+TGG | - | chr4.2:37548395-37548414 | MS.gene003796:CDS | 45.0% | |
| GAATCTATCCATCAACCACG+TGG | + | chr4.2:37548406-37548425 | None:intergenic | 45.0% | |
| GGATGTCGGGATACAATCAA+TGG | + | chr4.2:37548370-37548389 | None:intergenic | 45.0% | |
| GGTCGACTGGATGTACTTAT+GGG | - | chr4.2:37547006-37547025 | MS.gene003796:CDS | 45.0% | |
| TAAGTACATCCAGTCGACCT+CGG | + | chr4.2:37547005-37547024 | None:intergenic | 45.0% | |
| TAGAGTTCATCCCAGTGGAA+AGG | - | chr4.2:37547125-37547144 | MS.gene003796:intron | 45.0% | |
| TGCTACATCAACTCGAACTG+AGG | + | chr4.2:37547536-37547555 | None:intergenic | 45.0% | |
| ! | AGTCGTCGCTTATTTGGTTC+CGG | - | chr4.2:37548605-37548624 | MS.gene003796:CDS | 45.0% |
| ! | CTTGGATAATGTCTTTGGGG+TGG | - | chr4.2:37548308-37548327 | MS.gene003796:CDS | 45.0% |
| ! | TCCCTCTCTTTTGCTTGATC+AGG | + | chr4.2:37548477-37548496 | None:intergenic | 45.0% |
| !! | AAAACTCCAAGAATGGGCTG+TGG | + | chr4.2:37548651-37548670 | None:intergenic | 45.0% |
| !! | CGTGGTTGATGGATAGATTC+CGG | - | chr4.2:37548406-37548425 | MS.gene003796:CDS | 45.0% |
| !!! | TGGCTTGCTATTTTCCCTGA+AGG | - | chr4.2:37547217-37547236 | MS.gene003796:intron | 45.0% |
| ACCTGTTTGCAGGAGTTGCA+GGG | - | chr4.2:37547719-37547738 | MS.gene003796:intron | 50.0% | |
| ACTTATGGGACCTTGCGTTG+CGG | - | chr4.2:37547020-37547039 | MS.gene003796:CDS | 50.0% | |
| AGCAAGCCAGAGAGGATCTT+GGG | + | chr4.2:37547206-37547225 | None:intergenic | 50.0% | |
| ATGATCCCCAAGATCCTCTC+TGG | - | chr4.2:37547197-37547216 | MS.gene003796:intron | 50.0% | |
| CATCCCAGTGGAAAGGAAGT+GGG | - | chr4.2:37547132-37547151 | MS.gene003796:intron | 50.0% | |
| CCGAAGACGAAATTTCCACG+TGG | - | chr4.2:37548388-37548407 | MS.gene003796:CDS | 50.0% | |
| CTTCCCACTTCCTTTCCACT+GGG | + | chr4.2:37547138-37547157 | None:intergenic | 50.0% | |
| GATTGCAAATCACCGAACCG+AGG | - | chr4.2:37546985-37547004 | MS.gene003796:CDS | 50.0% | |
| GCAGCGGTATTTGTAGCCAA+TGG | + | chr4.2:37548280-37548299 | None:intergenic | 50.0% | |
| GGGAAAATAGCAAGCCAGAG+AGG | + | chr4.2:37547214-37547233 | None:intergenic | 50.0% | |
| GTCGCAGAGGTAGACACAAT+TGG | - | chr4.2:37548127-37548146 | MS.gene003796:CDS | 50.0% | |
| TACCTGTTTGCAGGAGTTGC+AGG | - | chr4.2:37547718-37547737 | MS.gene003796:intron | 50.0% | |
| TAGCAAGCCAGAGAGGATCT+TGG | + | chr4.2:37547207-37547226 | None:intergenic | 50.0% | |
| TAGCTGCTCTATAGTCGCAG+AGG | - | chr4.2:37548114-37548133 | MS.gene003796:CDS | 50.0% | |
| TATCCAAGAAAGACGGGCAG+CGG | + | chr4.2:37548296-37548315 | None:intergenic | 50.0% | |
| TCATCCCAGTGGAAAGGAAG+TGG | - | chr4.2:37547131-37547150 | MS.gene003796:intron | 50.0% | |
| TTGCAGGGCTCTCTAAATGC+AGG | - | chr4.2:37547734-37547753 | MS.gene003796:intron | 50.0% | |
| ! | GGGCTTTTGTACCTGTTTGC+AGG | - | chr4.2:37547709-37547728 | MS.gene003796:CDS | 50.0% |
| ! | TTTGGTGTGTCTACTGGTGC+TGG | - | chr4.2:37546757-37546776 | MS.gene003796:CDS | 50.0% |
| AAATGCCCTTCACAGCAGGG+AGG | + | chr4.2:37548500-37548519 | None:intergenic | 55.0% | |
| ACATCCAGTCGACCTCGGTT+CGG | + | chr4.2:37547000-37547019 | None:intergenic | 55.0% | |
| ATACCGCTGCCCGTCTTTCT+TGG | - | chr4.2:37548290-37548309 | MS.gene003796:CDS | 55.0% | |
| ATTCGGCCACAGCCCATTCT+TGG | - | chr4.2:37548642-37548661 | MS.gene003796:CDS | 55.0% | |
| GCAAGCCAGAGAGGATCTTG+GGG | + | chr4.2:37547205-37547224 | None:intergenic | 55.0% | |
| GCTTCCCACTTCCTTTCCAC+TGG | + | chr4.2:37547139-37547158 | None:intergenic | 55.0% | |
| !! | GAGGGGTTTGGTGTGTCTAC+TGG | - | chr4.2:37546751-37546770 | MS.gene003796:CDS | 55.0% |
| AGGGACCTCCCTGCTGTGAA+GGG | - | chr4.2:37548492-37548511 | MS.gene003796:CDS | 60.0% | |
| ATCACCGAACCGAGGTCGAC+TGG | - | chr4.2:37546993-37547012 | MS.gene003796:CDS | 60.0% | |
| ATGGGACCTTGCGTTGCGGA+AGG | - | chr4.2:37547024-37547043 | MS.gene003796:CDS | 60.0% | |
| GCCCTGCAACTCCTGCAAAC+AGG | + | chr4.2:37547723-37547742 | None:intergenic | 60.0% | |
| GCGTTGCGGAAGGGATGCAT+TGG | - | chr4.2:37547034-37547053 | MS.gene003796:CDS | 60.0% | |
| TGCATCCCTTCCGCAACGCA+AGG | + | chr4.2:37547033-37547052 | None:intergenic | 60.0% | |
| TGGGACCTTGCGTTGCGGAA+GGG | - | chr4.2:37547025-37547044 | MS.gene003796:CDS | 60.0% | |
| GAGGGACCTCCCTGCTGTGA+AGG | - | chr4.2:37548491-37548510 | MS.gene003796:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 37546680 | 37548680 | 37546680 | ID=MS.gene003796 |
| chr4.2 | mRNA | 37546680 | 37548680 | 37546680 | ID=MS.gene003796.t1;Parent=MS.gene003796 |
| chr4.2 | exon | 37548109 | 37548680 | 37548109 | ID=MS.gene003796.t1.exon1;Parent=MS.gene003796.t1 |
| chr4.2 | CDS | 37548109 | 37548680 | 37548109 | ID=cds.MS.gene003796.t1;Parent=MS.gene003796.t1 |
| chr4.2 | exon | 37547605 | 37547735 | 37547605 | ID=MS.gene003796.t1.exon2;Parent=MS.gene003796.t1 |
| chr4.2 | CDS | 37547605 | 37547735 | 37547605 | ID=cds.MS.gene003796.t1;Parent=MS.gene003796.t1 |
| chr4.2 | exon | 37546680 | 37547095 | 37546680 | ID=MS.gene003796.t1.exon3;Parent=MS.gene003796.t1 |
| chr4.2 | CDS | 37546680 | 37547095 | 37546680 | ID=cds.MS.gene003796.t1;Parent=MS.gene003796.t1 |
| Gene Sequence |
| Protein sequence |
