Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24489.t1 | XP_003589051.1 | 98.3 | 810 | 14 | 0 | 1 | 810 | 5 | 814 | 0.00E+00 | 1549.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24489.t1 | Q8RXU6 | 51.2 | 822 | 374 | 13 | 6 | 809 | 2 | 814 | 2.0e-229 | 797.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24489.t1 | G7IBB8 | 98.3 | 810 | 14 | 0 | 1 | 810 | 5 | 814 | 0.0e+00 | 1549.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene68085 | MS.gene24489 | PPI |
| MS.gene59369 | MS.gene24489 | PPI |
| MS.gene24489 | MS.gene09988 | PPI |
| MS.gene023799 | MS.gene24489 | PPI |
| MS.gene42236 | MS.gene24489 | PPI |
| MS.gene005792 | MS.gene24489 | PPI |
| MS.gene52173 | MS.gene24489 | PPI |
| MS.gene27648 | MS.gene24489 | PPI |
| MS.gene60517 | MS.gene24489 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24489.t1 | MTR_1g017880 | 98.148 | 810 | 15 | 0 | 1 | 810 | 5 | 814 | 0.0 | 1648 |
| MS.gene24489.t1 | MTR_8g014080 | 59.803 | 811 | 259 | 13 | 14 | 810 | 21 | 778 | 0.0 | 910 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24489.t1 | AT4G07410 | 52.906 | 826 | 354 | 14 | 6 | 809 | 2 | 814 | 0.0 | 813 |
| MS.gene24489.t1 | AT1G27470 | 50.856 | 818 | 376 | 11 | 7 | 809 | 3 | 809 | 0.0 | 762 |
| MS.gene24489.t1 | AT4G07410 | 51.485 | 707 | 308 | 13 | 123 | 809 | 10 | 701 | 0.0 | 662 |
Find 171 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATTGTTTCTTCGTTAATT+TGG | 0.176483 | 1.1:-4777104 | MS.gene24489:CDS |
| CGTTTCTTAACTTTAAAATT+TGG | 0.180643 | 1.1:+4770250 | None:intergenic |
| TATGGTCACTACTGTATTTA+AGG | 0.191664 | 1.1:-4775210 | MS.gene24489:intron |
| AACGAAGAAACAATTCTATT+AGG | 0.229249 | 1.1:+4777111 | None:intergenic |
| TTAAGAAACGGACTAAATTT+AGG | 0.232699 | 1.1:-4770237 | MS.gene24489:CDS |
| TGTAGCACCCTTGCTAATTC+AGG | 0.233267 | 1.1:-4773026 | MS.gene24489:CDS |
| TCTCCCTTGTGTTTAGTAAT+AGG | 0.234480 | 1.1:+4774962 | None:intergenic |
| AACATACCTTCTTGACTTAT+CGG | 0.261865 | 1.1:+4773734 | None:intergenic |
| TTGATATTGTAGACAATTCA+TGG | 0.284777 | 1.1:-4777138 | MS.gene24489:intron |
| ATGAGCTTCAATACCTGATT+TGG | 0.288173 | 1.1:+4775279 | None:intergenic |
| ACGAAGAAACAATTCTATTA+GGG | 0.299802 | 1.1:+4777112 | None:intergenic |
| CTCAGAAATGTTCGCAGAAC+TGG | 0.301296 | 1.1:-4773110 | MS.gene24489:CDS |
| CTTGTAGGATAATTCGAATC+TGG | 0.302847 | 1.1:-4775306 | MS.gene24489:intron |
| ATACCGTTTGTTTCAATTGT+TGG | 0.312010 | 1.1:+4777007 | None:intergenic |
| GATACAATGAGCTTTAAAAT+TGG | 0.318701 | 1.1:+4773244 | None:intergenic |
| CCAGTCCACAGACATATTTA+TGG | 0.326187 | 1.1:-4770061 | MS.gene24489:CDS |
| TGTTGGCCGATTCAAGATTA+AGG | 0.326470 | 1.1:-4773066 | MS.gene24489:CDS |
| GCAGTGGTAGCGTCCAGTTT+TGG | 0.327130 | 1.1:-4775015 | MS.gene24489:CDS |
| TTACCACAAATGGGCTCATT+CGG | 0.334403 | 1.1:-4773333 | MS.gene24489:CDS |
| CTTGTTTCTGCTAATACAAT+TGG | 0.334774 | 1.1:-4777252 | MS.gene24489:CDS |
| CTATCAGTACATTGTTGATC+TGG | 0.341100 | 1.1:+4771875 | None:intergenic |
| TCTAACCTTTGACCCGGTTC+AGG | 0.344228 | 1.1:+4775867 | None:intergenic |
| GACTCTTGGCACCACTGAAT+TGG | 0.349185 | 1.1:+4775964 | None:intergenic |
| AATCAACTGGTGTCTCAATC+TGG | 0.350274 | 1.1:-4776138 | MS.gene24489:CDS |
| TACCACAAATGGGCTCATTC+GGG | 0.350862 | 1.1:-4773332 | MS.gene24489:CDS |
| TGGTGTCTCAATCTGGAAAA+TGG | 0.351689 | 1.1:-4776131 | MS.gene24489:CDS |
| AAGATGGTTCTTTAGAGCTT+TGG | 0.362564 | 1.1:-4777275 | MS.gene24489:CDS |
| TCATAATATGTCAGCAGGAC+TGG | 0.363369 | 1.1:-4775260 | MS.gene24489:CDS |
| AGGAGATTTCACGAGTTTCC+TGG | 0.367008 | 1.1:-4771763 | MS.gene24489:CDS |
| ACGATTCTAGTTACCACAAA+TGG | 0.376710 | 1.1:-4773343 | MS.gene24489:CDS |
| GGTTATTTGAAGAAATTTCA+TGG | 0.380212 | 1.1:-4776052 | MS.gene24489:CDS |
| CTTCACGGCAATCCCAAAAC+TGG | 0.385655 | 1.1:+4775002 | None:intergenic |
| TATATTTAAAGTCCCTGAAC+CGG | 0.389609 | 1.1:-4775880 | MS.gene24489:CDS |
| CGAATCTGGGATGCCAAATC+AGG | 0.389622 | 1.1:-4775292 | MS.gene24489:CDS |
| TTCACCTTCATCTGGCTTCA+CGG | 0.395271 | 1.1:+4770342 | None:intergenic |
| GCACTGGTTCATTTCAAGAT+TGG | 0.397434 | 1.1:-4771932 | MS.gene24489:CDS |
| TTTGAAGAAATTTCATGGTT+CGG | 0.397802 | 1.1:-4776047 | MS.gene24489:CDS |
| CAGTCCACAGACATATTTAT+GGG | 0.410750 | 1.1:-4770060 | MS.gene24489:CDS |
| TGAAACATTTCACCTTCATC+TGG | 0.411563 | 1.1:+4770334 | None:intergenic |
| TTGGCTGCCGTGAATTGCTT+TGG | 0.419955 | 1.1:-4772282 | MS.gene24489:CDS |
| CGACGTAGATGCCAAGAAAT+GGG | 0.420058 | 1.1:-4771821 | MS.gene24489:CDS |
| TTCAACTTCATCTTCTGTGA+TGG | 0.427675 | 1.1:-4771710 | MS.gene24489:CDS |
| AGTGACGATGTTGAAACTAA+TGG | 0.427761 | 1.1:-4776091 | MS.gene24489:CDS |
| GATGCTAAATTCATATGTTC+AGG | 0.430069 | 1.1:-4775732 | MS.gene24489:CDS |
| CTCTGCCGGTGCCGATGGAC+AGG | 0.430377 | 1.1:-4774897 | MS.gene24489:intron |
| TCGACGTAGATGCCAAGAAA+TGG | 0.431681 | 1.1:-4771822 | MS.gene24489:CDS |
| CTGTGATGGTTTATAGCTCC+AGG | 0.431945 | 1.1:-4771696 | MS.gene24489:intron |
| GAGAACAGCATATTGTGATC+AGG | 0.433412 | 1.1:+4774917 | None:intergenic |
| TATTTAACTTGGATTTACTA+AGG | 0.436717 | 1.1:-4772248 | MS.gene24489:intron |
| CTGGAAAATGGCTGTGACAT+TGG | 0.437384 | 1.1:-4776119 | MS.gene24489:CDS |
| AGATATCTATGTATTTAACT+TGG | 0.437584 | 1.1:-4772259 | MS.gene24489:CDS |
| GGTGCCTCTGTTACAGCTTG+TGG | 0.438583 | 1.1:-4771907 | MS.gene24489:CDS |
| AAAATCATTGAATGGGCAAA+TGG | 0.441619 | 1.1:+4772891 | None:intergenic |
| TCACCTTCATCTGGCTTCAC+GGG | 0.442399 | 1.1:+4770343 | None:intergenic |
| TCCTCTCTGTTGATAGTAGC+TGG | 0.443254 | 1.1:-4772858 | MS.gene24489:CDS |
| GTGGACATGAACTTTGTATA+TGG | 0.444074 | 1.1:-4775228 | MS.gene24489:CDS |
| TTTCGTGAACTGCAAGATGA+TGG | 0.447707 | 1.1:-4772363 | MS.gene24489:CDS |
| TAGTAGCTGGCTATGATAGA+AGG | 0.455685 | 1.1:-4772845 | MS.gene24489:CDS |
| CTTGTAGCTAGAGCTGTAAC+TGG | 0.456465 | 1.1:+4777330 | None:intergenic |
| TGTTTGGCAGATGCTTTGCC+AGG | 0.458002 | 1.1:-4773404 | MS.gene24489:intron |
| AATTGGTTGGCACTGTCAAT+TGG | 0.458618 | 1.1:-4777235 | MS.gene24489:intron |
| CACAATATGCTGTTCTCTGC+CGG | 0.462673 | 1.1:-4774911 | MS.gene24489:CDS |
| CATAATATGTCAGCAGGACT+GGG | 0.463162 | 1.1:-4775259 | MS.gene24489:CDS |
| GAAATACATTTGTTCTTCCT+AGG | 0.464080 | 1.1:-4771783 | MS.gene24489:CDS |
| GTTGCTGCTTCGCGTGAAGA+TGG | 0.467166 | 1.1:-4777291 | MS.gene24489:CDS |
| TTGTGGTAACTAGAATCGTC+TGG | 0.480597 | 1.1:+4773347 | None:intergenic |
| AAAGCCTACTCTTTATAAAG+TGG | 0.480694 | 1.1:-4772976 | MS.gene24489:CDS |
| TCTTCGTTAATTTGGTGTCC+TGG | 0.480811 | 1.1:-4777096 | MS.gene24489:CDS |
| CTTGAGAACATCAGGTGAAT+CGG | 0.480935 | 1.1:+4775991 | None:intergenic |
| TTGGATTGCTTGAGAACATC+AGG | 0.483327 | 1.1:+4775983 | None:intergenic |
| GTAGCACCCTTGCTAATTCA+GGG | 0.483581 | 1.1:-4773025 | MS.gene24489:CDS |
| TTTGTGATGGGTGGTTCGGC+TGG | 0.484859 | 1.1:+4772333 | None:intergenic |
| CTGTTCTCTGCCGGTGCCGA+TGG | 0.486551 | 1.1:-4774902 | MS.gene24489:CDS |
| TATCAGTACATTGTTGATCT+GGG | 0.487210 | 1.1:+4771876 | None:intergenic |
| TCAAATGCAACTGCGACTCT+TGG | 0.491627 | 1.1:+4775950 | None:intergenic |
| GAAACTAATGGTCATCACAT+AGG | 0.495553 | 1.1:-4776079 | MS.gene24489:CDS |
| AAGATGAAGTTGAAGAGGGA+GGG | 0.498473 | 1.1:+4771719 | None:intergenic |
| GTTGAGAGGGAGCTCCTTCA+CGG | 0.501006 | 1.1:+4774987 | None:intergenic |
| CTAACCTTTGACCCGGTTCA+GGG | 0.503572 | 1.1:+4775868 | None:intergenic |
| CGATTCTAGTTACCACAAAT+GGG | 0.506040 | 1.1:-4773342 | MS.gene24489:CDS |
| ATGGGTGTTCTTTGAGGCAC+AGG | 0.507036 | 1.1:+4773218 | None:intergenic |
| CAAGGGAGATGTACATGCTC+TGG | 0.510792 | 1.1:-4774948 | MS.gene24489:CDS |
| GCCCCGAATGAGCCCATTTG+TGG | 0.510898 | 1.1:+4773330 | None:intergenic |
| AGTATTAAGTGCAACATGAA+TGG | 0.513759 | 1.1:+4773199 | None:intergenic |
| TTTAGTAATAGGTTGTTGAG+AGG | 0.515218 | 1.1:+4774973 | None:intergenic |
| TTAATTTGGTGTCCTGGTGG+TGG | 0.517102 | 1.1:-4777090 | MS.gene24489:CDS |
| TGGGCAAATGGTAATCTCTC+AGG | 0.518521 | 1.1:+4772903 | None:intergenic |
| TGGTTCATTTCAAGATTGGA+TGG | 0.519161 | 1.1:-4771928 | MS.gene24489:CDS |
| ACTACTGACCACATCGGACC+AGG | 0.520037 | 1.1:+4770096 | None:intergenic |
| TTAGTAATAGGTTGTTGAGA+GGG | 0.520199 | 1.1:+4774974 | None:intergenic |
| CTATGTCTTCTAAGATGGAT+AGG | 0.522766 | 1.1:-4777398 | None:intergenic |
| TCATCTTGCAGTTCACGAAA+GGG | 0.525251 | 1.1:+4772366 | None:intergenic |
| GAAGCTCATAATATGTCAGC+AGG | 0.525722 | 1.1:-4775265 | MS.gene24489:CDS |
| CACAGAAGATGAAGTTGAAG+AGG | 0.525956 | 1.1:+4771714 | None:intergenic |
| CAGACATATTTATGGGGCAT+AGG | 0.526587 | 1.1:-4770053 | None:intergenic |
| GATATCTCCAAAGCAATTCA+CGG | 0.527256 | 1.1:+4772275 | None:intergenic |
| TTTCTGCTAATACAATTGGT+TGG | 0.528706 | 1.1:-4777248 | MS.gene24489:CDS |
| AAACTAATGGTCATCACATA+GGG | 0.530093 | 1.1:-4776078 | MS.gene24489:CDS |
| CACAGCAACAGTCAAGGCTC+GGG | 0.530876 | 1.1:+4773757 | None:intergenic |
| ATCATCTTGCAGTTCACGAA+AGG | 0.532225 | 1.1:+4772365 | None:intergenic |
| GAGATGCCTTAATCTTGAAT+CGG | 0.532571 | 1.1:+4773060 | None:intergenic |
| CATCCCATGCTTATCTCAGC+AGG | 0.532891 | 1.1:-4773308 | MS.gene24489:CDS |
| TTGTAGGATAATTCGAATCT+GGG | 0.536163 | 1.1:-4775305 | MS.gene24489:intron |
| GCACAGCAACAGTCAAGGCT+CGG | 0.541082 | 1.1:+4773756 | None:intergenic |
| GGAAACTCGTGAAATCTCCT+AGG | 0.541613 | 1.1:+4771766 | None:intergenic |
| TTCATACACTCGATTTGAAG+AGG | 0.545523 | 1.1:+4771846 | None:intergenic |
| TCTCCAACAATTGAAACAAA+CGG | 0.546284 | 1.1:-4777010 | MS.gene24489:intron |
| CAGATGCTTTGCCAGGTGAA+AGG | 0.548106 | 1.1:-4773397 | MS.gene24489:CDS |
| ACATGAATGGGTGTTCTTTG+AGG | 0.552135 | 1.1:+4773212 | None:intergenic |
| AAGTCCCTGAACCGGGTCAA+AGG | 0.555249 | 1.1:-4775872 | MS.gene24489:intron |
| AGAACAGCATATTGTGATCA+GGG | 0.556826 | 1.1:+4774918 | None:intergenic |
| GCTAGAGCTGTAACTGGTGA+AGG | 0.559021 | 1.1:+4777336 | None:intergenic |
| ATATGTTCAGGAAGTAGTGA+TGG | 0.563275 | 1.1:-4775720 | MS.gene24489:CDS |
| TATGTCAGCAGGACTGGGTA+GGG | 0.564418 | 1.1:-4775254 | MS.gene24489:CDS |
| TTTAAGTGTGACTTGGAGCA+CGG | 0.565542 | 1.1:-4775754 | MS.gene24489:CDS |
| ATCTCCTGCTGAGATAAGCA+TGG | 0.567403 | 1.1:+4773304 | None:intergenic |
| CAGATGGTGCTTGAATCAAC+TGG | 0.567745 | 1.1:-4776151 | MS.gene24489:CDS |
| GAGTTTCCTGGTGAAGTCAT+CGG | 0.568608 | 1.1:-4771751 | MS.gene24489:CDS |
| CAACAATAGAGAATGAGAAG+TGG | 0.569018 | 1.1:-4773817 | MS.gene24489:CDS |
| CCTGGTGGTGGATTTCCTCA+TGG | 0.569249 | 1.1:-4777078 | MS.gene24489:CDS |
| TAGTTCTGATAAGCAGTGGT+TGG | 0.571569 | 1.1:-4772301 | MS.gene24489:CDS |
| ACATACCTGTCCATCGGCAC+CGG | 0.573944 | 1.1:+4774892 | None:intergenic |
| TTGCCCGTGAAGCCAGATGA+AGG | 0.574206 | 1.1:-4770346 | MS.gene24489:CDS |
| CATTTCTGAGATGTAGCAAA+CGG | 0.574984 | 1.1:+4773123 | None:intergenic |
| GTCGCAGTTGCATTTGATGA+CGG | 0.577272 | 1.1:-4775944 | MS.gene24489:CDS |
| AAAACTCCCCTGAATTAGCA+AGG | 0.581392 | 1.1:+4773018 | None:intergenic |
| AATGGTCATCACATAGGGAA+TGG | 0.581718 | 1.1:-4776073 | MS.gene24489:CDS |
| GAAGATGAAGTTGAAGAGGG+AGG | 0.583223 | 1.1:+4771718 | None:intergenic |
| ATATTTAAAGTCCCTGAACC+GGG | 0.584952 | 1.1:-4775879 | MS.gene24489:CDS |
| GCTCTAGCTACAAGCATAGA+CGG | 0.586506 | 1.1:-4777321 | MS.gene24489:CDS |
| ATATGTCAGCAGGACTGGGT+AGG | 0.587065 | 1.1:-4775255 | MS.gene24489:CDS |
| GTATTAAGTGCAACATGAAT+GGG | 0.592917 | 1.1:+4773200 | None:intergenic |
| TTACTAGTTCTGATAAGCAG+TGG | 0.597067 | 1.1:-4772305 | MS.gene24489:CDS |
| GGTTGTGGATGTCAATAGCT+CGG | 0.597562 | 1.1:-4772409 | MS.gene24489:CDS |
| GAAAGTCCGATGACTTCACC+AGG | 0.599319 | 1.1:+4771745 | None:intergenic |
| AGGTCTGGGATACTTGTTAG+CGG | 0.601890 | 1.1:-4775043 | MS.gene24489:CDS |
| ACGTAGATGCCAAGAAATGG+GGG | 0.606256 | 1.1:-4771819 | MS.gene24489:CDS |
| TACGCAAAATCTGAAACTGT+TGG | 0.608344 | 1.1:-4773083 | MS.gene24489:CDS |
| ACAGAAGATGAAGTTGAAGA+GGG | 0.608601 | 1.1:+4771715 | None:intergenic |
| GACGTAGATGCCAAGAAATG+GGG | 0.609239 | 1.1:-4771820 | MS.gene24489:CDS |
| TAGCACCCTTGCTAATTCAG+GGG | 0.610186 | 1.1:-4773024 | MS.gene24489:CDS |
| CTACTGACCACATCGGACCA+GGG | 0.610907 | 1.1:+4770097 | None:intergenic |
| CCATGAGGAAATCCACCACC+AGG | 0.612207 | 1.1:+4777078 | None:intergenic |
| TATGTTCAGGAAGTAGTGAT+GGG | 0.616373 | 1.1:-4775719 | MS.gene24489:intron |
| GCAGGACTGGGTAGGGACAG+TGG | 0.617074 | 1.1:-4775247 | MS.gene24489:CDS |
| CTCTCCACTTTATAAAGAGT+AGG | 0.621814 | 1.1:+4772972 | None:intergenic |
| ACAACCTATTACTAAACACA+AGG | 0.630218 | 1.1:-4774966 | MS.gene24489:CDS |
| CCATAAATATGTCTGTGGAC+TGG | 0.632084 | 1.1:+4770061 | None:intergenic |
| TCTCCTGCTGAGATAAGCAT+GGG | 0.635324 | 1.1:+4773305 | None:intergenic |
| ATCAGTACATTGTTGATCTG+GGG | 0.638142 | 1.1:+4771877 | None:intergenic |
| AAAGTGGAGAGATCTGAAGC+CGG | 0.638678 | 1.1:-4772960 | MS.gene24489:CDS |
| AAATCCACAAGCTGTAACAG+AGG | 0.638859 | 1.1:+4771903 | None:intergenic |
| AGAAAGTCTAACCTTTGACC+CGG | 0.639129 | 1.1:+4775861 | None:intergenic |
| GCAACTACATACCTGTCCAT+CGG | 0.647576 | 1.1:+4774886 | None:intergenic |
| TATCGGCACAGCAACAGTCA+AGG | 0.652629 | 1.1:+4773751 | None:intergenic |
| AAACTCCCCTGAATTAGCAA+GGG | 0.654023 | 1.1:+4773019 | None:intergenic |
| GAACAGCATATTGTGATCAG+GGG | 0.655877 | 1.1:+4774919 | None:intergenic |
| ATGCCCCATAAATATGTCTG+TGG | 0.658679 | 1.1:+4770056 | None:intergenic |
| GAAGACTGCAGTAAAAGCAT+TGG | 0.659899 | 1.1:+4773161 | None:intergenic |
| TCGTTAATTTGGTGTCCTGG+TGG | 0.662690 | 1.1:-4777093 | MS.gene24489:CDS |
| ACCACAAATGGGCTCATTCG+GGG | 0.664226 | 1.1:-4773331 | MS.gene24489:CDS |
| GCTGTGCCGATAAGTCAAGA+AGG | 0.667546 | 1.1:-4773740 | MS.gene24489:intron |
| ATCTAAACTACTGACCACAT+CGG | 0.670818 | 1.1:+4770090 | None:intergenic |
| CTTGTTAGCGGAGACAGCAG+TGG | 0.672051 | 1.1:-4775031 | MS.gene24489:CDS |
| TCTCAAGCAATCCAATTCAG+TGG | 0.678741 | 1.1:-4775975 | MS.gene24489:CDS |
| TCAAGATTAAGGCATCTCGT+AGG | 0.683885 | 1.1:-4773055 | MS.gene24489:CDS |
| CAACCTATTACTAAACACAA+GGG | 0.685925 | 1.1:-4774965 | MS.gene24489:CDS |
| GAAGAAAACAAACGACCATG+AGG | 0.687642 | 1.1:+4777063 | None:intergenic |
| CGTAGATGCCAAGAAATGGG+GGG | 0.700968 | 1.1:-4771818 | MS.gene24489:CDS |
| GCCAGCTACTATCAACAGAG+AGG | 0.712284 | 1.1:+4772857 | None:intergenic |
| AGTCCACAGACATATTTATG+GGG | 0.720718 | 1.1:-4770059 | MS.gene24489:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 4770054 | 4777406 | 4770054 | ID=MS.gene24489 |
| chr1.1 | mRNA | 4770054 | 4777406 | 4770054 | ID=MS.gene24489.t1;Parent=MS.gene24489 |
| chr1.1 | exon | 4777236 | 4777406 | 4777236 | ID=MS.gene24489.t1.exon1;Parent=MS.gene24489.t1 |
| chr1.1 | CDS | 4777236 | 4777406 | 4777236 | ID=cds.MS.gene24489.t1;Parent=MS.gene24489.t1 |
| chr1.1 | exon | 4777011 | 4777148 | 4777011 | ID=MS.gene24489.t1.exon2;Parent=MS.gene24489.t1 |
| chr1.1 | CDS | 4777011 | 4777148 | 4777011 | ID=cds.MS.gene24489.t1;Parent=MS.gene24489.t1 |
| chr1.1 | exon | 4775873 | 4776170 | 4775873 | ID=MS.gene24489.t1.exon3;Parent=MS.gene24489.t1 |
| chr1.1 | CDS | 4775873 | 4776170 | 4775873 | ID=cds.MS.gene24489.t1;Parent=MS.gene24489.t1 |
| chr1.1 | exon | 4775720 | 4775783 | 4775720 | ID=MS.gene24489.t1.exon4;Parent=MS.gene24489.t1 |
| chr1.1 | CDS | 4775720 | 4775783 | 4775720 | ID=cds.MS.gene24489.t1;Parent=MS.gene24489.t1 |
| chr1.1 | exon | 4775211 | 4775321 | 4775211 | ID=MS.gene24489.t1.exon5;Parent=MS.gene24489.t1 |
| chr1.1 | CDS | 4775211 | 4775321 | 4775211 | ID=cds.MS.gene24489.t1;Parent=MS.gene24489.t1 |
| chr1.1 | exon | 4774898 | 4775063 | 4774898 | ID=MS.gene24489.t1.exon6;Parent=MS.gene24489.t1 |
| chr1.1 | CDS | 4774898 | 4775063 | 4774898 | ID=cds.MS.gene24489.t1;Parent=MS.gene24489.t1 |
| chr1.1 | exon | 4773741 | 4773864 | 4773741 | ID=MS.gene24489.t1.exon7;Parent=MS.gene24489.t1 |
| chr1.1 | CDS | 4773741 | 4773864 | 4773741 | ID=cds.MS.gene24489.t1;Parent=MS.gene24489.t1 |
| chr1.1 | exon | 4772839 | 4773416 | 4772839 | ID=MS.gene24489.t1.exon8;Parent=MS.gene24489.t1 |
| chr1.1 | CDS | 4772839 | 4773416 | 4772839 | ID=cds.MS.gene24489.t1;Parent=MS.gene24489.t1 |
| chr1.1 | exon | 4772249 | 4772430 | 4772249 | ID=MS.gene24489.t1.exon9;Parent=MS.gene24489.t1 |
| chr1.1 | CDS | 4772249 | 4772430 | 4772249 | ID=cds.MS.gene24489.t1;Parent=MS.gene24489.t1 |
| chr1.1 | exon | 4771697 | 4771957 | 4771697 | ID=MS.gene24489.t1.exon10;Parent=MS.gene24489.t1 |
| chr1.1 | CDS | 4771697 | 4771957 | 4771697 | ID=cds.MS.gene24489.t1;Parent=MS.gene24489.t1 |
| chr1.1 | exon | 4770054 | 4770393 | 4770054 | ID=MS.gene24489.t1.exon11;Parent=MS.gene24489.t1 |
| chr1.1 | CDS | 4770054 | 4770393 | 4770054 | ID=cds.MS.gene24489.t1;Parent=MS.gene24489.t1 |
| Gene Sequence |
| Protein sequence |
