Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24501.t1 | KEH40000.1 | 94.9 | 818 | 35 | 2 | 1 | 811 | 70 | 887 | 0.00E+00 | 1174.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24501.t1 | B6EUA9 | 50.7 | 819 | 350 | 9 | 3 | 811 | 30 | 804 | 8.7e-171 | 602.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24501.t1 | A0A072VPD9 | 94.9 | 818 | 35 | 2 | 1 | 811 | 70 | 887 | 0.0e+00 | 1174.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene24501 | MS.gene063673 | PPI |
| MS.gene24501 | MS.gene47154 | PPI |
| MS.gene24501 | MS.gene55513 | PPI |
| MS.gene24501 | MS.gene074082 | PPI |
| MS.gene24501 | MS.gene67503 | PPI |
| MS.gene24501 | MS.gene64820 | PPI |
| MS.gene24501 | MS.gene67685 | PPI |
| MS.gene24501 | MS.gene83541 | PPI |
| MS.gene24501 | MS.gene86409 | PPI |
| MS.gene24501 | MS.gene74436 | PPI |
| MS.gene24501 | MS.gene067412 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24501.t1 | MTR_1g017520 | 97.436 | 975 | 18 | 2 | 1 | 968 | 70 | 1044 | 0.0 | 1953 |
| MS.gene24501.t1 | MTR_1g106025 | 52.454 | 978 | 401 | 25 | 17 | 968 | 64 | 1003 | 0.0 | 773 |
| MS.gene24501.t1 | MTR_4g074440 | 24.422 | 778 | 427 | 27 | 44 | 726 | 182 | 893 | 8.86e-35 | 144 |
| MS.gene24501.t1 | MTR_4g074440 | 24.954 | 549 | 289 | 21 | 44 | 527 | 182 | 672 | 1.53e-18 | 91.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24501.t1 | AT1G44910 | 56.192 | 977 | 367 | 20 | 3 | 966 | 30 | 958 | 0.0 | 884 |
| MS.gene24501.t1 | AT1G44910 | 55.816 | 937 | 357 | 18 | 3 | 926 | 30 | 922 | 0.0 | 838 |
| MS.gene24501.t1 | AT3G19670 | 42.510 | 988 | 498 | 24 | 1 | 965 | 50 | 990 | 0.0 | 637 |
| MS.gene24501.t1 | AT3G19670 | 42.510 | 988 | 498 | 24 | 1 | 965 | 50 | 990 | 0.0 | 637 |
| MS.gene24501.t1 | AT3G19670 | 42.510 | 988 | 498 | 24 | 1 | 965 | 50 | 990 | 0.0 | 637 |
| MS.gene24501.t1 | AT3G19670 | 42.510 | 988 | 498 | 24 | 1 | 965 | 31 | 971 | 0.0 | 634 |
| MS.gene24501.t1 | AT3G19840 | 25.212 | 353 | 224 | 10 | 410 | 732 | 454 | 796 | 1.34e-18 | 92.0 |
| MS.gene24501.t1 | AT3G19840 | 27.426 | 237 | 131 | 10 | 39 | 237 | 97 | 330 | 1.10e-11 | 69.7 |
Find 207 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCATGGCTTGCCTGTTTC+AGG | 0.129013 | 1.1:-4993931 | MS.gene24501:CDS |
| GATAATCAACGACCAGTTTC+TGG | 0.168664 | 1.1:-4990122 | MS.gene24501:CDS |
| AGCAGAATATAGGAAATTTC+TGG | 0.198110 | 1.1:-4986124 | MS.gene24501:CDS |
| GGCCTGTTTGTTTGAATATA+TGG | 0.213492 | 1.1:+4994009 | None:intergenic |
| AAATGCATTTAAAGCGCTTT+TGG | 0.225366 | 1.1:-4989156 | MS.gene24501:CDS |
| CCATATACCTTGAGTTCTTC+TGG | 0.251280 | 1.1:+4990407 | None:intergenic |
| ACGCTTACGTTCCTTCTCTT+TGG | 0.287757 | 1.1:+4979119 | None:intergenic |
| ACATCCTCAAATAAATCTTT+TGG | 0.289484 | 1.1:+4981118 | None:intergenic |
| GGGACCACGGGGACGGTTCC+AGG | 0.299819 | 1.1:-4978218 | MS.gene24501:CDS |
| TTTCAGTTCACACCATCTTA+TGG | 0.321948 | 1.1:-4993787 | MS.gene24501:intron |
| TTATCATCCATTCAGTATTT+GGG | 0.338884 | 1.1:-4988817 | MS.gene24501:intron |
| TACCAAAGTTTCACCATCAT+TGG | 0.343297 | 1.1:+4989317 | None:intergenic |
| CGTTCAGTTGGCCCGTGAGC+AGG | 0.344750 | 1.1:-4990315 | MS.gene24501:intron |
| TTCTGATTGGACGTGGGAAC+AGG | 0.389042 | 1.1:-4989117 | MS.gene24501:intron |
| CTGTGAATGTTCATTCTGAT+TGG | 0.390623 | 1.1:-4989130 | MS.gene24501:CDS |
| CTCATTCCATCCACTTCTCC+TGG | 0.393371 | 1.1:+4978200 | None:intergenic |
| TGAGGAGGTGCTCCTGAAAC+AGG | 0.402908 | 1.1:+4993919 | None:intergenic |
| ACAGCAGTTGCAGGAAGCTT+AGG | 0.403204 | 1.1:-4990008 | MS.gene24501:CDS |
| GGGCTGATGCATCAACTGTT+TGG | 0.410617 | 1.1:-4990623 | MS.gene24501:CDS |
| GATATAGGAACGAGTCCGTC+GGG | 0.415488 | 1.1:-4981395 | MS.gene24501:intron |
| GGGCTTGAAGCAAGACCATT+AGG | 0.420883 | 1.1:+4990173 | None:intergenic |
| TGCCATATATTCAAACAAAC+AGG | 0.421533 | 1.1:-4994011 | MS.gene24501:CDS |
| AGCTACTTGCAAAACGATAT+CGG | 0.425459 | 1.1:-4980392 | MS.gene24501:CDS |
| ACCACTGATAATCCAGAAAC+TGG | 0.425854 | 1.1:+4990110 | None:intergenic |
| AGAGTACAAGGCAATCTAGT+TGG | 0.428021 | 1.1:-4991425 | MS.gene24501:CDS |
| TCCAACACTTTGACACCTAA+TGG | 0.429541 | 1.1:-4990188 | MS.gene24501:CDS |
| CATCATCCTCTAGCCGATCC+TGG | 0.432068 | 1.1:+4985962 | None:intergenic |
| AAGAAGGCATCAGAGCAGTA+TGG | 0.433242 | 1.1:-4978472 | MS.gene24501:CDS |
| GGAATGAGGAGCTTGAAGAT+GGG | 0.437118 | 1.1:-4978185 | MS.gene24501:CDS |
| ACTTCCTTATATAGTTCAAT+TGG | 0.438478 | 1.1:-4979201 | MS.gene24501:intron |
| AGCGACTACATCAGTATTTG+AGG | 0.439124 | 1.1:-4980440 | MS.gene24501:CDS |
| ACTGCACCTACAGCAGTTGC+AGG | 0.439764 | 1.1:-4990017 | MS.gene24501:CDS |
| TGGAGCACCTCTTCAAGATA+TGG | 0.442331 | 1.1:-4989797 | MS.gene24501:CDS |
| TTTGAGGCGGATGCTGGTAG+TGG | 0.444273 | 1.1:+4993752 | None:intergenic |
| AGGTTACTCAGCAATCAGTA+TGG | 0.449369 | 1.1:-4990436 | MS.gene24501:CDS |
| AACCAATGATGGTGAAACTT+TGG | 0.452007 | 1.1:-4989319 | MS.gene24501:CDS |
| TGGAATGAGGAGCTTGAAGA+TGG | 0.452090 | 1.1:-4978186 | MS.gene24501:CDS |
| GATGCAACAGCTTGATATTG+AGG | 0.452557 | 1.1:+4981160 | None:intergenic |
| TCTTCTCCTCTCTATAACCA+TGG | 0.455879 | 1.1:+4978526 | None:intergenic |
| GCAGGAGGTGCATGCATTTG+AGG | 0.456721 | 1.1:+4993736 | None:intergenic |
| TACTCCAAAAGATTTATTTG+AGG | 0.462163 | 1.1:-4981122 | MS.gene24501:CDS |
| GTCGGGATGCCTGCTATTCA+AGG | 0.463184 | 1.1:-4994126 | MS.gene24501:CDS |
| GACGACCAAGGTTGTCCGGC+AGG | 0.464632 | 1.1:+4993718 | None:intergenic |
| CCCATGACTTCACAACAATT+CGG | 0.467987 | 1.1:-4994180 | MS.gene24501:CDS |
| GAGTACAAGGCAATCTAGTT+GGG | 0.468679 | 1.1:-4991424 | MS.gene24501:CDS |
| TGATTATCAGTGGCAACAAC+TGG | 0.471567 | 1.1:+4990137 | None:intergenic |
| AACGAGTCCGTCGGGGTGAA+AGG | 0.472697 | 1.1:-4981387 | MS.gene24501:CDS |
| TGAGGACGACCAAGGTTGTC+CGG | 0.473310 | 1.1:+4993714 | None:intergenic |
| CTTTGAAAATCTTGAAAAGC+AGG | 0.473646 | 1.1:-4981095 | MS.gene24501:intron |
| GGCACATAAAACTATTAGCC+AGG | 0.474323 | 1.1:-4990294 | MS.gene24501:CDS |
| CATGATTCTACTCCTGTCAA+TGG | 0.474687 | 1.1:-4989817 | MS.gene24501:CDS |
| TTGTTTCTGACACCATTCCC+TGG | 0.476710 | 1.1:+4990276 | None:intergenic |
| ACAACTGGTGTAACAGAAGA+TGG | 0.477825 | 1.1:+4990152 | None:intergenic |
| AGCAGAGGAGGCAGCAGCAT+TGG | 0.478603 | 1.1:+4990244 | None:intergenic |
| CCGGCTGGAGTTCAATCATC+TGG | 0.478668 | 1.1:-4993655 | MS.gene24501:CDS |
| TGAAGAGGTGCTCCATTGAC+AGG | 0.480449 | 1.1:+4989805 | None:intergenic |
| TTGAGGCGGATGCTGGTAGT+GGG | 0.480505 | 1.1:+4993753 | None:intergenic |
| GTTCACACCATCTTATGGTC+AGG | 0.487720 | 1.1:-4993782 | MS.gene24501:CDS |
| CCATTCAGTATTTGGGTCAA+AGG | 0.489226 | 1.1:-4988810 | MS.gene24501:intron |
| GGAATACATTACATACTTGA+AGG | 0.490150 | 1.1:-4979148 | MS.gene24501:CDS |
| GCAACAACTCTGCATCTGAT+TGG | 0.493344 | 1.1:-4991657 | MS.gene24501:CDS |
| AAGCTTCCTGCAACTGCTGT+AGG | 0.493376 | 1.1:+4990011 | None:intergenic |
| CACCTCCTGCCGGACAACCT+TGG | 0.495114 | 1.1:-4993723 | MS.gene24501:CDS |
| GTGGCGAGATTATTGCTTGA+AGG | 0.495782 | 1.1:-4981293 | MS.gene24501:intron |
| CATCTTTGTGAATTCTTCGC+GGG | 0.495972 | 1.1:+4988744 | None:intergenic |
| GCAGGACTATATTCGTGACT+TGG | 0.496186 | 1.1:-4981526 | MS.gene24501:intron |
| TCACAACAATTCGGACATGC+AGG | 0.496394 | 1.1:-4994171 | MS.gene24501:CDS |
| TGACCGGGCTGAATTTGTCT+TGG | 0.497049 | 1.1:+4994063 | None:intergenic |
| TCATCCTGTTTCATCATCAC+AGG | 0.497226 | 1.1:-4994043 | MS.gene24501:CDS |
| GATATCGGAGATCAATTTGA+AGG | 0.497316 | 1.1:-4980377 | MS.gene24501:intron |
| ATTAGAGAGAGCTAAGGAGA+AGG | 0.502167 | 1.1:-4979542 | MS.gene24501:CDS |
| CCGTTCCTTCATCTAATGTC+GGG | 0.507422 | 1.1:-4994143 | MS.gene24501:CDS |
| GCCGTTCCTTCATCTAATGT+CGG | 0.508127 | 1.1:-4994144 | MS.gene24501:CDS |
| TTGGAGCTAGCTGCATTAGC+TGG | 0.508131 | 1.1:+4990206 | None:intergenic |
| AGAGAGAGCTAAGGAGAAGG+AGG | 0.508555 | 1.1:-4979539 | MS.gene24501:CDS |
| TATTATTACTTCTTCAACAT+GGG | 0.510330 | 1.1:-4979358 | MS.gene24501:CDS |
| AATTGCTGACCTTGAATAGC+AGG | 0.511307 | 1.1:+4994117 | None:intergenic |
| AGAGTTATTAGAGAGAGCTA+AGG | 0.512572 | 1.1:-4979548 | MS.gene24501:CDS |
| TCTCCTGAGTCAGACAATGA+AGG | 0.513236 | 1.1:-4978261 | MS.gene24501:CDS |
| GGCGGAATTTAGCAGAATAT+AGG | 0.514204 | 1.1:-4986134 | MS.gene24501:CDS |
| TTTGTTTGAATATATGGCAT+AGG | 0.515540 | 1.1:+4994015 | None:intergenic |
| CATGCATTTGAGGCGGATGC+TGG | 0.516351 | 1.1:+4993746 | None:intergenic |
| AGTGCTTGGTTCGACTCCTA+TGG | 0.517790 | 1.1:+4990055 | None:intergenic |
| TCAGAGCAGTATGGAGGATG+TGG | 0.518136 | 1.1:-4978463 | MS.gene24501:CDS |
| CAAATGCATGCACCTCCTGC+CGG | 0.518916 | 1.1:-4993733 | MS.gene24501:CDS |
| CATGGTGGAACTTGAGAGAA+AGG | 0.520392 | 1.1:-4988393 | MS.gene24501:intron |
| AAAGACACAAGAGGGACCAC+GGG | 0.521871 | 1.1:-4978230 | MS.gene24501:CDS |
| CTCCCTTCATTGTCTGACTC+AGG | 0.522487 | 1.1:+4978258 | None:intergenic |
| CTAGAAGAACATATTGCTGA+TGG | 0.524243 | 1.1:-4981337 | MS.gene24501:CDS |
| TGCTTGAAGTAACGACAGAA+TGG | 0.525508 | 1.1:+4990078 | None:intergenic |
| CTCACAGTTACAACAGTGCT+TGG | 0.526579 | 1.1:+4990041 | None:intergenic |
| ACATCTTTGTGAATTCTTCG+CGG | 0.526596 | 1.1:+4988743 | None:intergenic |
| GAGCTTGAAGATGGGGAGCT+TGG | 0.528342 | 1.1:-4978177 | MS.gene24501:CDS |
| GTAACGTCTGTACAGCCGGC+TGG | 0.529488 | 1.1:-4993670 | MS.gene24501:CDS |
| CAAGAGCATACTGCTGGTGA+TGG | 0.531052 | 1.1:-4991634 | MS.gene24501:CDS |
| TTTGGTATATGCAAATAAGC+TGG | 0.531455 | 1.1:-4989301 | MS.gene24501:intron |
| AAGAGAGAAAACATCGAAGA+AGG | 0.532161 | 1.1:-4978488 | MS.gene24501:CDS |
| ACCATTAGGTGTCAAAGTGT+TGG | 0.536875 | 1.1:+4990187 | None:intergenic |
| TTCTCAACAAATGCAACAGT+TGG | 0.538488 | 1.1:-4994088 | MS.gene24501:CDS |
| CTGTTGAAAGAGTAAGAGAT+CGG | 0.540036 | 1.1:-4988436 | MS.gene24501:CDS |
| AGATTTATTTGAAAGCTACA+TGG | 0.541453 | 1.1:-4988411 | MS.gene24501:CDS |
| CGTACAGTGTATAGAGATTG+AGG | 0.543077 | 1.1:+4993901 | None:intergenic |
| TGATGATGAAACAGGATGAC+CGG | 0.543456 | 1.1:+4994047 | None:intergenic |
| AGCTGTAACGTCTGTACAGC+CGG | 0.544674 | 1.1:-4993674 | MS.gene24501:CDS |
| AGAAGCTAGAGGCTGAAGAA+AGG | 0.544989 | 1.1:-4988786 | MS.gene24501:CDS |
| ACGTAAGCGTGAAGAAGAAA+AGG | 0.545043 | 1.1:-4979106 | MS.gene24501:intron |
| TGATATAGGAACGAGTCCGT+CGG | 0.545937 | 1.1:-4981396 | MS.gene24501:intron |
| TGACTTGGAGAAGGAGGAAG+AGG | 0.546026 | 1.1:-4981511 | MS.gene24501:CDS |
| ATACTGCTGGTGATGGGAGA+AGG | 0.548219 | 1.1:-4991627 | MS.gene24501:intron |
| GCTGTTGCATCAAATACATC+CGG | 0.551042 | 1.1:-4981148 | MS.gene24501:CDS |
| GAAGTGACCGCAAGAAGTCT+AGG | 0.551692 | 1.1:-4978392 | MS.gene24501:CDS |
| GGAGTTGATGTCACCTCTTG+AGG | 0.553125 | 1.1:-4991391 | MS.gene24501:intron |
| ATACCTTCCTAGACTTCTTG+CGG | 0.553463 | 1.1:+4978385 | None:intergenic |
| GAAAGAGTTCACTTCTTCAG+AGG | 0.554876 | 1.1:-4990601 | MS.gene24501:CDS |
| TTCAACATGGGAGGAATGCA+AGG | 0.556166 | 1.1:-4979346 | MS.gene24501:CDS |
| TCTAGAAAATCGCGAAGACA+TGG | 0.556892 | 1.1:-4978414 | MS.gene24501:CDS |
| ATACCCTGTGATGATGAAAC+AGG | 0.557450 | 1.1:+4994039 | None:intergenic |
| CAGGAGAAGTGGATGGAATG+AGG | 0.557842 | 1.1:-4978199 | MS.gene24501:CDS |
| TCCGAATTGTTGTGAAGTCA+TGG | 0.558122 | 1.1:+4994179 | None:intergenic |
| CTCCTGAGTCAGACAATGAA+GGG | 0.558423 | 1.1:-4978260 | MS.gene24501:CDS |
| GAGCTAGCTGCATTAGCTGG+TGG | 0.559039 | 1.1:+4990209 | None:intergenic |
| GCTTGAAGTAACGACAGAAT+GGG | 0.559357 | 1.1:+4990079 | None:intergenic |
| TAAAGTCATCAGCAAGGCGT+TGG | 0.560032 | 1.1:+4979497 | None:intergenic |
| AGTTGATGTTGCAGCAGAGG+AGG | 0.561689 | 1.1:+4990232 | None:intergenic |
| AAAAGACACAAGAGGGACCA+CGG | 0.563924 | 1.1:-4978231 | MS.gene24501:CDS |
| TCAGAGGAGAAAACCAATGA+TGG | 0.566057 | 1.1:-4989330 | MS.gene24501:CDS |
| TAAAACTATTAGCCAGGGAA+TGG | 0.567415 | 1.1:-4990288 | MS.gene24501:CDS |
| TATATTCTGCTAAATTCCGC+CGG | 0.569486 | 1.1:+4986136 | None:intergenic |
| AGCTAACATCATCCACAAGA+TGG | 0.570809 | 1.1:-4988602 | MS.gene24501:CDS |
| GTCGTTACTTCAAGCACCAT+AGG | 0.571185 | 1.1:-4990071 | MS.gene24501:CDS |
| CTATATTCGTGACTTGGAGA+AGG | 0.573107 | 1.1:-4981520 | MS.gene24501:CDS |
| CACATAAACAATCATATGCA+TGG | 0.577352 | 1.1:-4993946 | MS.gene24501:CDS |
| ACGGTTCCAGGAGAAGTGGA+TGG | 0.580383 | 1.1:-4978206 | MS.gene24501:CDS |
| TATTACTTCTTCAACATGGG+AGG | 0.581858 | 1.1:-4979355 | MS.gene24501:CDS |
| AAAGAGTTCACTTCTTCAGA+GGG | 0.582420 | 1.1:-4990600 | MS.gene24501:CDS |
| GGAAAAGGAAAATGCTGCTG+AGG | 0.585150 | 1.1:-4986163 | MS.gene24501:CDS |
| ATGTACCTTCACAAAATCAC+AGG | 0.586297 | 1.1:+4986098 | None:intergenic |
| CCAGATGATTGAACTCCAGC+CGG | 0.587420 | 1.1:+4993655 | None:intergenic |
| TATAATGCCCTGAAAACACT+TGG | 0.587574 | 1.1:-4988987 | MS.gene24501:CDS |
| CTGCAGGTATTATTACAACA+AGG | 0.589073 | 1.1:-4990456 | MS.gene24501:intron |
| TGTTGAAAGAGTAAGAGATC+GGG | 0.589167 | 1.1:-4988435 | MS.gene24501:CDS |
| GAATGAGGAGCTTGAAGATG+GGG | 0.589298 | 1.1:-4978184 | MS.gene24501:CDS |
| ACATTAGTTTGTCCAACCAC+AGG | 0.594069 | 1.1:+4989360 | None:intergenic |
| GATTGGCAAGAGCATACTGC+TGG | 0.595223 | 1.1:-4991640 | MS.gene24501:CDS |
| GGGGACGGTTCCAGGAGAAG+TGG | 0.596083 | 1.1:-4978210 | MS.gene24501:CDS |
| GACAATACCAGAAGAACTCA+AGG | 0.597189 | 1.1:-4990414 | MS.gene24501:intron |
| ATGTTCATTCTGATTGGACG+TGG | 0.597884 | 1.1:-4989124 | MS.gene24501:CDS |
| CACAAGAGGGACCACGGGGA+CGG | 0.599081 | 1.1:-4978225 | MS.gene24501:CDS |
| AATACCTCCATATCTTGAAG+AGG | 0.599572 | 1.1:+4989790 | None:intergenic |
| AAAATGCTGCTGAGGAACAC+CGG | 0.602673 | 1.1:-4986155 | MS.gene24501:CDS |
| CAACTGGTGTAACAGAAGAT+GGG | 0.603013 | 1.1:+4990153 | None:intergenic |
| GGCATCCCGACATTAGATGA+AGG | 0.603036 | 1.1:+4994138 | None:intergenic |
| TAACTTATTATATACACTCA+AGG | 0.603685 | 1.1:-4979473 | MS.gene24501:intron |
| ATTACTACAACAAGAGTACA+AGG | 0.603856 | 1.1:-4991437 | MS.gene24501:CDS |
| AAATACTGATGTAGTCGCTA+CGG | 0.604006 | 1.1:+4980444 | None:intergenic |
| CCCGACATTAGATGAAGGAA+CGG | 0.604025 | 1.1:+4994143 | None:intergenic |
| AACTAATGTGACTCCTTCAG+AGG | 0.605322 | 1.1:-4989346 | MS.gene24501:CDS |
| TGGAGTTGATGTTGCAGCAG+AGG | 0.607065 | 1.1:+4990229 | None:intergenic |
| AAAATTATACCTCCATCTTG+TGG | 0.609019 | 1.1:+4988590 | None:intergenic |
| ACAGCTTGGTGTGCATGTTG+TGG | 0.610265 | 1.1:+4993973 | None:intergenic |
| TTCTCCTGGAACCGTCCCCG+TGG | 0.611301 | 1.1:+4978214 | None:intergenic |
| AACTGGTCGTTGATTATCAG+TGG | 0.611617 | 1.1:+4990127 | None:intergenic |
| ATATTATTACTTCTTCAACA+TGG | 0.611639 | 1.1:-4979359 | MS.gene24501:CDS |
| TTTATTTGAAAGCTACATGG+TGG | 0.617248 | 1.1:-4988408 | MS.gene24501:CDS |
| ACCAGTTTCTGGATTATCAG+TGG | 0.617569 | 1.1:-4990111 | MS.gene24501:CDS |
| TGCATATGATTGTTTATGTG+AGG | 0.618480 | 1.1:+4993949 | None:intergenic |
| GGCAATGCCTGACCATAAGA+TGG | 0.619972 | 1.1:+4993775 | None:intergenic |
| AGATATACTTAAGTCGAGCA+AGG | 0.622702 | 1.1:-4980563 | MS.gene24501:intron |
| CACAACAATTCGGACATGCA+GGG | 0.622894 | 1.1:-4994170 | MS.gene24501:CDS |
| AGATGCAGAGTTGTTGCTAG+TGG | 0.623592 | 1.1:+4991663 | None:intergenic |
| GAGGCATAAAAGACACAAGA+GGG | 0.628856 | 1.1:-4978238 | MS.gene24501:CDS |
| AAGAGCATACTGCTGGTGAT+GGG | 0.629015 | 1.1:-4991633 | MS.gene24501:CDS |
| GACCAAGGTTGTCCGGCAGG+AGG | 0.629097 | 1.1:+4993721 | None:intergenic |
| TGTTTATGTGAGGAACAGCT+TGG | 0.631811 | 1.1:+4993959 | None:intergenic |
| TATTCGTGACTTGGAGAAGG+AGG | 0.635163 | 1.1:-4981517 | MS.gene24501:CDS |
| GCTCCAAGACAAATTCAGCC+CGG | 0.637474 | 1.1:-4994066 | MS.gene24501:CDS |
| AGAGGTGACATCAACTCCAA+AGG | 0.638169 | 1.1:+4991396 | None:intergenic |
| CATCCTGTTTCATCATCACA+GGG | 0.640900 | 1.1:-4994042 | MS.gene24501:CDS |
| CAAGACATGACTGACAGCCA+TGG | 0.642401 | 1.1:-4978543 | MS.gene24501:CDS |
| TGACCGCAAGAAGTCTAGGA+AGG | 0.647233 | 1.1:-4978388 | MS.gene24501:intron |
| GCAACTTGCGAAATGCATCA+CGG | 0.647762 | 1.1:+4981359 | None:intergenic |
| AAGGCATCAGAGCAGTATGG+AGG | 0.652072 | 1.1:-4978469 | MS.gene24501:CDS |
| GCACATAAAACTATTAGCCA+GGG | 0.652408 | 1.1:-4990293 | MS.gene24501:CDS |
| AGTTAGTAAAGTCATCAGCA+AGG | 0.652933 | 1.1:+4979491 | None:intergenic |
| GGAGGTGCATGCATTTGAGG+CGG | 0.653398 | 1.1:+4993739 | None:intergenic |
| TGACAGCCATGGTTATAGAG+AGG | 0.655215 | 1.1:-4978532 | MS.gene24501:CDS |
| AGCACCTCTTCAAGATATGG+AGG | 0.656627 | 1.1:-4989794 | MS.gene24501:intron |
| CCGAATTGTTGTGAAGTCAT+GGG | 0.660354 | 1.1:+4994180 | None:intergenic |
| GATGATGAAACAGGATGACC+GGG | 0.660914 | 1.1:+4994048 | None:intergenic |
| GTTACAGCTGCAGCACTCTG+AGG | 0.670283 | 1.1:+4993688 | None:intergenic |
| TAACATCATCCACAAGATGG+AGG | 0.670995 | 1.1:-4988599 | MS.gene24501:intron |
| TGCAGCACTCTGAGGTACTG+AGG | 0.673442 | 1.1:+4993696 | None:intergenic |
| TGAGGCGGATGCTGGTAGTG+GGG | 0.674444 | 1.1:+4993754 | None:intergenic |
| GGAGCTTGGTGATGATGCAG+AGG | 0.676472 | 1.1:-4978163 | MS.gene24501:CDS |
| GGGTCAAAGGAAGAAGCTAG+AGG | 0.686231 | 1.1:-4988797 | MS.gene24501:CDS |
| TGAGGTACTGAGGACGACCA+AGG | 0.686869 | 1.1:+4993706 | None:intergenic |
| GGAGGCATAAAAGACACAAG+AGG | 0.688744 | 1.1:-4978239 | MS.gene24501:CDS |
| ATATAGGAACGAGTCCGTCG+GGG | 0.690250 | 1.1:-4981394 | MS.gene24501:intron |
| TTACCTGGAAAACAAGCAAG+CGG | 0.693536 | 1.1:+4985911 | None:intergenic |
| CTGAGTCAGACAATGAAGGG+AGG | 0.695593 | 1.1:-4978257 | MS.gene24501:CDS |
| TGTTCATTCTGATTGGACGT+GGG | 0.712631 | 1.1:-4989123 | MS.gene24501:CDS |
| TGTTGTGGAACAGATGTCAG+TGG | 0.716753 | 1.1:+4993988 | None:intergenic |
| AAGACACAAGAGGGACCACG+GGG | 0.722637 | 1.1:-4978229 | MS.gene24501:CDS |
| ATGCTGCTGAGGAACACCGG+CGG | 0.733976 | 1.1:-4986152 | MS.gene24501:CDS |
| ACAGTGTATAGAGATTGAGG+AGG | 0.757065 | 1.1:+4993904 | None:intergenic |
| TTCTTACTGCTAAAACACAG+TGG | 0.768613 | 1.1:-4981312 | MS.gene24501:CDS |
| GCGAAAACAAGCTTTCAACG+AGG | 0.790814 | 1.1:-4988961 | MS.gene24501:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 4978158 | 4994199 | 4978158 | ID=MS.gene24501 |
| chr1.1 | mRNA | 4978158 | 4994199 | 4978158 | ID=MS.gene24501.t1;Parent=MS.gene24501 |
| chr1.1 | exon | 4993906 | 4994199 | 4993906 | ID=MS.gene24501.t1.exon1;Parent=MS.gene24501.t1 |
| chr1.1 | CDS | 4993906 | 4994199 | 4993906 | ID=cds.MS.gene24501.t1;Parent=MS.gene24501.t1 |
| chr1.1 | exon | 4993636 | 4993803 | 4993636 | ID=MS.gene24501.t1.exon2;Parent=MS.gene24501.t1 |
| chr1.1 | CDS | 4993636 | 4993803 | 4993636 | ID=cds.MS.gene24501.t1;Parent=MS.gene24501.t1 |
| chr1.1 | exon | 4991628 | 4991695 | 4991628 | ID=MS.gene24501.t1.exon3;Parent=MS.gene24501.t1 |
| chr1.1 | CDS | 4991628 | 4991695 | 4991628 | ID=cds.MS.gene24501.t1;Parent=MS.gene24501.t1 |
| chr1.1 | exon | 4991392 | 4991461 | 4991392 | ID=MS.gene24501.t1.exon4;Parent=MS.gene24501.t1 |
| chr1.1 | CDS | 4991392 | 4991461 | 4991392 | ID=cds.MS.gene24501.t1;Parent=MS.gene24501.t1 |
| chr1.1 | exon | 4990594 | 4990646 | 4990594 | ID=MS.gene24501.t1.exon5;Parent=MS.gene24501.t1 |
| chr1.1 | CDS | 4990594 | 4990646 | 4990594 | ID=cds.MS.gene24501.t1;Parent=MS.gene24501.t1 |
| chr1.1 | exon | 4990415 | 4990472 | 4990415 | ID=MS.gene24501.t1.exon6;Parent=MS.gene24501.t1 |
| chr1.1 | CDS | 4990415 | 4990472 | 4990415 | ID=cds.MS.gene24501.t1;Parent=MS.gene24501.t1 |
| chr1.1 | exon | 4989969 | 4990330 | 4989969 | ID=MS.gene24501.t1.exon7;Parent=MS.gene24501.t1 |
| chr1.1 | CDS | 4989969 | 4990330 | 4989969 | ID=cds.MS.gene24501.t1;Parent=MS.gene24501.t1 |
| chr1.1 | exon | 4989795 | 4989858 | 4989795 | ID=MS.gene24501.t1.exon8;Parent=MS.gene24501.t1 |
| chr1.1 | CDS | 4989795 | 4989858 | 4989795 | ID=cds.MS.gene24501.t1;Parent=MS.gene24501.t1 |
| chr1.1 | exon | 4989302 | 4989400 | 4989302 | ID=MS.gene24501.t1.exon9;Parent=MS.gene24501.t1 |
| chr1.1 | CDS | 4989302 | 4989400 | 4989302 | ID=cds.MS.gene24501.t1;Parent=MS.gene24501.t1 |
| chr1.1 | exon | 4989118 | 4989186 | 4989118 | ID=MS.gene24501.t1.exon10;Parent=MS.gene24501.t1 |
| chr1.1 | CDS | 4989118 | 4989186 | 4989118 | ID=cds.MS.gene24501.t1;Parent=MS.gene24501.t1 |
| chr1.1 | exon | 4988962 | 4989039 | 4988962 | ID=MS.gene24501.t1.exon11;Parent=MS.gene24501.t1 |
| chr1.1 | CDS | 4988962 | 4989039 | 4988962 | ID=cds.MS.gene24501.t1;Parent=MS.gene24501.t1 |
| chr1.1 | exon | 4988738 | 4988824 | 4988738 | ID=MS.gene24501.t1.exon12;Parent=MS.gene24501.t1 |
| chr1.1 | CDS | 4988738 | 4988824 | 4988738 | ID=cds.MS.gene24501.t1;Parent=MS.gene24501.t1 |
| chr1.1 | exon | 4988600 | 4988634 | 4988600 | ID=MS.gene24501.t1.exon13;Parent=MS.gene24501.t1 |
| chr1.1 | CDS | 4988600 | 4988634 | 4988600 | ID=cds.MS.gene24501.t1;Parent=MS.gene24501.t1 |
| chr1.1 | exon | 4988394 | 4988499 | 4988394 | ID=MS.gene24501.t1.exon14;Parent=MS.gene24501.t1 |
| chr1.1 | CDS | 4988394 | 4988499 | 4988394 | ID=cds.MS.gene24501.t1;Parent=MS.gene24501.t1 |
| chr1.1 | exon | 4986104 | 4986184 | 4986104 | ID=MS.gene24501.t1.exon15;Parent=MS.gene24501.t1 |
| chr1.1 | CDS | 4986104 | 4986184 | 4986104 | ID=cds.MS.gene24501.t1;Parent=MS.gene24501.t1 |
| chr1.1 | exon | 4985915 | 4986007 | 4985915 | ID=MS.gene24501.t1.exon16;Parent=MS.gene24501.t1 |
| chr1.1 | CDS | 4985915 | 4986007 | 4985915 | ID=cds.MS.gene24501.t1;Parent=MS.gene24501.t1 |
| chr1.1 | exon | 4981491 | 4981544 | 4981491 | ID=MS.gene24501.t1.exon17;Parent=MS.gene24501.t1 |
| chr1.1 | CDS | 4981491 | 4981544 | 4981491 | ID=cds.MS.gene24501.t1;Parent=MS.gene24501.t1 |
| chr1.1 | exon | 4981294 | 4981410 | 4981294 | ID=MS.gene24501.t1.exon18;Parent=MS.gene24501.t1 |
| chr1.1 | CDS | 4981294 | 4981410 | 4981294 | ID=cds.MS.gene24501.t1;Parent=MS.gene24501.t1 |
| chr1.1 | exon | 4981096 | 4981194 | 4981096 | ID=MS.gene24501.t1.exon19;Parent=MS.gene24501.t1 |
| chr1.1 | CDS | 4981096 | 4981194 | 4981096 | ID=cds.MS.gene24501.t1;Parent=MS.gene24501.t1 |
| chr1.1 | exon | 4980564 | 4980611 | 4980564 | ID=MS.gene24501.t1.exon20;Parent=MS.gene24501.t1 |
| chr1.1 | CDS | 4980564 | 4980611 | 4980564 | ID=cds.MS.gene24501.t1;Parent=MS.gene24501.t1 |
| chr1.1 | exon | 4980378 | 4980470 | 4980378 | ID=MS.gene24501.t1.exon21;Parent=MS.gene24501.t1 |
| chr1.1 | CDS | 4980378 | 4980470 | 4980378 | ID=cds.MS.gene24501.t1;Parent=MS.gene24501.t1 |
| chr1.1 | exon | 4979474 | 4979581 | 4979474 | ID=MS.gene24501.t1.exon22;Parent=MS.gene24501.t1 |
| chr1.1 | CDS | 4979474 | 4979581 | 4979474 | ID=cds.MS.gene24501.t1;Parent=MS.gene24501.t1 |
| chr1.1 | exon | 4979318 | 4979382 | 4979318 | ID=MS.gene24501.t1.exon23;Parent=MS.gene24501.t1 |
| chr1.1 | CDS | 4979318 | 4979382 | 4979318 | ID=cds.MS.gene24501.t1;Parent=MS.gene24501.t1 |
| chr1.1 | exon | 4979107 | 4979209 | 4979107 | ID=MS.gene24501.t1.exon24;Parent=MS.gene24501.t1 |
| chr1.1 | CDS | 4979107 | 4979209 | 4979107 | ID=cds.MS.gene24501.t1;Parent=MS.gene24501.t1 |
| chr1.1 | exon | 4978389 | 4978694 | 4978389 | ID=MS.gene24501.t1.exon25;Parent=MS.gene24501.t1 |
| chr1.1 | CDS | 4978389 | 4978694 | 4978389 | ID=cds.MS.gene24501.t1;Parent=MS.gene24501.t1 |
| chr1.1 | exon | 4978158 | 4978292 | 4978158 | ID=MS.gene24501.t1.exon26;Parent=MS.gene24501.t1 |
| chr1.1 | CDS | 4978158 | 4978292 | 4978158 | ID=cds.MS.gene24501.t1;Parent=MS.gene24501.t1 |
| Gene Sequence |
| Protein sequence |
