Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24518.t1 | XP_013465941.1 | 99.6 | 252 | 1 | 0 | 1 | 252 | 1 | 252 | 2.40E-140 | 508.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24518.t1 | Q9M2Y6 | 65.3 | 262 | 79 | 2 | 2 | 252 | 1 | 261 | 5.0e-94 | 345.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24518.t1 | B7FIL1 | 99.6 | 252 | 1 | 0 | 1 | 252 | 1 | 252 | 1.7e-140 | 508.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049807 | MS.gene24518 | 0.800016 | 1.76E-48 | -1.69E-46 |
| MS.gene055469 | MS.gene24518 | 0.802039 | 6.78E-49 | -1.69E-46 |
| MS.gene060134 | MS.gene24518 | 0.82023 | 7.66E-53 | -1.69E-46 |
| MS.gene060135 | MS.gene24518 | 0.830798 | 2.40E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24518.t1 | MTR_1g017220 | 99.603 | 252 | 1 | 0 | 1 | 252 | 1 | 252 | 0.0 | 519 |
| MS.gene24518.t1 | MTR_2g010540 | 61.154 | 260 | 90 | 1 | 2 | 250 | 1 | 260 | 2.04e-120 | 344 |
| MS.gene24518.t1 | MTR_4g097530 | 60.000 | 260 | 94 | 2 | 2 | 252 | 1 | 259 | 3.73e-112 | 323 |
| MS.gene24518.t1 | MTR_2g010540 | 60.280 | 214 | 74 | 1 | 2 | 204 | 1 | 214 | 4.49e-91 | 268 |
| MS.gene24518.t1 | MTR_3g109730 | 77.953 | 127 | 16 | 4 | 126 | 252 | 11 | 125 | 2.04e-59 | 184 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24518.t1 | AT3G49720 | 65.267 | 262 | 79 | 2 | 2 | 252 | 1 | 261 | 1.78e-124 | 354 |
| MS.gene24518.t1 | AT3G49720 | 65.267 | 262 | 79 | 2 | 2 | 252 | 1 | 261 | 1.78e-124 | 354 |
| MS.gene24518.t1 | AT3G49720 | 65.267 | 262 | 79 | 2 | 2 | 252 | 1 | 261 | 1.78e-124 | 354 |
| MS.gene24518.t1 | AT5G65810 | 62.977 | 262 | 82 | 3 | 2 | 252 | 1 | 258 | 3.92e-120 | 343 |
Find 58 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTACAAGAGAGAAAGATTT+TGG | 0.176751 | 1.1:-5280558 | None:intergenic |
| GTAGCAGACGTTTCTAAATT+TGG | 0.181431 | 1.1:+5281334 | MS.gene24518:CDS |
| AAGTGGAATATCTGGCATTT+TGG | 0.205441 | 1.1:-5281636 | None:intergenic |
| CAATAAAACTCTTCCTGATT+TGG | 0.285100 | 1.1:+5280620 | MS.gene24518:CDS |
| GATGGTTTAGTGATATTTAC+TGG | 0.296086 | 1.1:+5280657 | MS.gene24518:CDS |
| TTTCCTTCAAAGTAACTTAG+AGG | 0.301335 | 1.1:+5281557 | MS.gene24518:CDS |
| TGACAAAACTGGAGACGATT+TGG | 0.315458 | 1.1:-5278320 | None:intergenic |
| TTCTCATTGGTTACTTGTAC+AGG | 0.330384 | 1.1:+5278485 | MS.gene24518:CDS |
| AACTGGAGACGATTTGGATT+TGG | 0.354965 | 1.1:-5278314 | None:intergenic |
| AAATTCTGACCACAATTATA+AGG | 0.359359 | 1.1:-5278348 | None:intergenic |
| CCATATGCTTTCTGTAAAAC+AGG | 0.362663 | 1.1:-5280342 | None:intergenic |
| ACCTTGGCCTTCTGATTAGT+TGG | 0.376653 | 1.1:-5281313 | None:intergenic |
| TCAAGTTTCCTCTTCCATAT+AGG | 0.389012 | 1.1:+5280535 | MS.gene24518:CDS |
| GTGACTTCAAGTGGAATATC+TGG | 0.393548 | 1.1:-5281644 | None:intergenic |
| GCTGATACCCTCACCAAATC+AGG | 0.395423 | 1.1:-5280633 | None:intergenic |
| TCTCCTCTAAGTTACTTTGA+AGG | 0.396518 | 1.1:-5281560 | None:intergenic |
| ATAAGGCCAATTGACAAAAC+TGG | 0.397117 | 1.1:-5278331 | None:intergenic |
| TTTAGAAACGTCTGCTACCT+TGG | 0.402863 | 1.1:-5281329 | None:intergenic |
| TGGTTCTATACCCCAGGCTT+CGG | 0.413733 | 1.1:-5280442 | None:intergenic |
| GCCGTTTAGATTCTGTTAGC+AGG | 0.417799 | 1.1:+5278742 | MS.gene24518:CDS |
| GGTTACTTGTACAGGGGCTC+AGG | 0.420689 | 1.1:+5278493 | MS.gene24518:CDS |
| TGTAATTGTTTCAGATACTC+TGG | 0.424438 | 1.1:+5280575 | MS.gene24518:CDS |
| TAGGGAGGCTTGTTTCTCAT+TGG | 0.425163 | 1.1:+5278472 | MS.gene24518:intron |
| CTCATTGGTTACTTGTACAG+GGG | 0.431130 | 1.1:+5278487 | MS.gene24518:CDS |
| AATCTTCTAGAAGAAGTTCC+AGG | 0.440271 | 1.1:-5278283 | None:intergenic |
| AGGAAGATGAAACCGAAGCC+TGG | 0.442655 | 1.1:+5280430 | MS.gene24518:CDS |
| CCCTGCTAACAGAATCTAAA+CGG | 0.453868 | 1.1:-5278743 | None:intergenic |
| GGAACTTCTTCTAGAAGATT+CGG | 0.454951 | 1.1:+5278286 | MS.gene24518:CDS |
| GTCAATTGGCCTTATAATTG+TGG | 0.457375 | 1.1:+5278339 | MS.gene24518:CDS |
| TCAGCATCCTCTATATCATA+TGG | 0.464095 | 1.1:-5280462 | None:intergenic |
| GATTCTGTTAGCAGGGTTGA+AGG | 0.466384 | 1.1:+5278750 | MS.gene24518:CDS |
| TCTCATTGGTTACTTGTACA+GGG | 0.473655 | 1.1:+5278486 | MS.gene24518:CDS |
| CTACACGCACATTGCCTCTA+CGG | 0.486209 | 1.1:-5280506 | None:intergenic |
| GAGACCACATAACAAGTGTC+TGG | 0.486625 | 1.1:-5280396 | None:intergenic |
| GGAAGATGAAACCGAAGCCT+GGG | 0.497641 | 1.1:+5280431 | MS.gene24518:CDS |
| CTAAGATGAGGAGTGGATCC+TGG | 0.502597 | 1.1:+5281523 | MS.gene24518:CDS |
| TGTGGTCTCTAAATTGCAAA+AGG | 0.503512 | 1.1:+5280410 | MS.gene24518:CDS |
| TATAGAACCATATGATATAG+AGG | 0.516192 | 1.1:+5280455 | MS.gene24518:CDS |
| GTAATGATGTCGAGGAGACC+TGG | 0.528090 | 1.1:+5278265 | None:intergenic |
| ATCATATGGTTCTATACCCC+AGG | 0.528710 | 1.1:-5280448 | None:intergenic |
| ATCAATGGAGTGACTTCAAG+TGG | 0.530196 | 1.1:-5281653 | None:intergenic |
| TTGTATATAGGTGGACTTGG+AGG | 0.538889 | 1.1:+5278720 | MS.gene24518:intron |
| AACTCTTCCTGATTTGGTGA+GGG | 0.539875 | 1.1:+5280626 | MS.gene24518:CDS |
| CCGTTTAGATTCTGTTAGCA+GGG | 0.545887 | 1.1:+5278743 | MS.gene24518:CDS |
| TTGGTGAGGGTATCAGCTGA+TGG | 0.552785 | 1.1:+5280639 | MS.gene24518:CDS |
| AAACTCTTCCTGATTTGGTG+AGG | 0.567840 | 1.1:+5280625 | MS.gene24518:CDS |
| CGTTTCTAAATTTGGAAGAG+CGG | 0.568253 | 1.1:+5281342 | MS.gene24518:CDS |
| TGATTATTTGTGCAGTGGTG+AGG | 0.575702 | 1.1:+5280305 | MS.gene24518:CDS |
| TCCAACTAATCAGAAGGCCA+AGG | 0.581897 | 1.1:+5281312 | MS.gene24518:CDS |
| CTTCAGGCTAAGATGAGGAG+TGG | 0.587352 | 1.1:+5281516 | MS.gene24518:intron |
| TGGTCCAGACACTTGTTATG+TGG | 0.588659 | 1.1:+5280392 | MS.gene24518:CDS |
| GTAAAACAGGAATTGCTCGT+TGG | 0.599584 | 1.1:-5280329 | None:intergenic |
| TGAATCCAGTAATGATGTCG+AGG | 0.637330 | 1.1:+5278257 | None:intergenic |
| GATGAGGAGTGGATCCTGGT+GGG | 0.642314 | 1.1:+5281527 | MS.gene24518:CDS |
| GCAGGTGATTATTTGTGCAG+TGG | 0.650350 | 1.1:+5280300 | MS.gene24518:intron |
| AGATGAGGAGTGGATCCTGG+TGG | 0.665807 | 1.1:+5281526 | MS.gene24518:CDS |
| TGCAAAGCACAAATCCGTAG+AGG | 0.674784 | 1.1:+5280492 | MS.gene24518:CDS |
| GAAGATGAAACCGAAGCCTG+GGG | 0.688039 | 1.1:+5280432 | MS.gene24518:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTCAATTATTTCTATTT+TGG | + | chr1.1:5278823-5278842 | MS.gene24518:intron | 10.0% |
| !!! | TATAATATATTGTTTTTGAT+TGG | + | chr1.1:5278932-5278951 | MS.gene24518:intron | 10.0% |
| !!! | TTTTTTTTTCAAATAACTAT+CGG | + | chr1.1:5278620-5278639 | MS.gene24518:intron | 10.0% |
| !! | ATGTTAATAAAAATGGATAA+GGG | + | chr1.1:5280015-5280034 | MS.gene24518:intron | 15.0% |
| !! | CTGTATTATTACAAAATATA+TGG | - | chr1.1:5280267-5280286 | None:intergenic | 15.0% |
| !! | TAGAAATAATTGAAAATTGA+AGG | - | chr1.1:5278820-5278839 | None:intergenic | 15.0% |
| !!! | AAACATAGTTTTAACATAAA+TGG | - | chr1.1:5280829-5280848 | None:intergenic | 15.0% |
| !!! | AAGTATGATTAGATATTTTT+TGG | + | chr1.1:5281012-5281031 | MS.gene24518:intron | 15.0% |
| !!! | AGTATGATTAGATATTTTTT+GGG | + | chr1.1:5281013-5281032 | MS.gene24518:intron | 15.0% |
| !!! | ATAATTATGCCATTTTTTAT+TGG | + | chr1.1:5278867-5278886 | MS.gene24518:intron | 15.0% |
| !!! | TATTTTGGTTGTTTTTTATT+TGG | + | chr1.1:5278838-5278857 | MS.gene24518:intron | 15.0% |
| !!! | TTTATTTTGGATCAATAATT+GGG | - | chr1.1:5279768-5279787 | None:intergenic | 15.0% |
| !! | AAAAATAAAGTTTACTCAGA+TGG | - | chr1.1:5280710-5280729 | None:intergenic | 20.0% |
| !! | AAAATAAAGTTTACTCAGAT+GGG | - | chr1.1:5280709-5280728 | None:intergenic | 20.0% |
| !! | AACTTGCATTAAGTTTATTA+CGG | + | chr1.1:5280757-5280776 | MS.gene24518:intron | 20.0% |
| !! | GATGTTAATAAAAATGGATA+AGG | + | chr1.1:5280014-5280033 | MS.gene24518:intron | 20.0% |
| !! | TCAAATTGGAAATTCATAAT+GGG | - | chr1.1:5278987-5279006 | None:intergenic | 20.0% |
| !! | TTCAAATTGGAAATTCATAA+TGG | - | chr1.1:5278988-5279007 | None:intergenic | 20.0% |
| !!! | AATTTTGTTTTTGCAATGTA+GGG | + | chr1.1:5278454-5278473 | MS.gene24518:intron | 20.0% |
| !!! | ATTGTACTTGGTAAATTTTA+TGG | + | chr1.1:5279730-5279749 | MS.gene24518:intron | 20.0% |
| !!! | CTTTATTTTGGATCAATAAT+TGG | - | chr1.1:5279769-5279788 | None:intergenic | 20.0% |
| !!! | CTTTGAGATGTTAATAAAAA+TGG | + | chr1.1:5280008-5280027 | MS.gene24518:intron | 20.0% |
| !!! | TAATTTTGTTTTTGCAATGT+AGG | + | chr1.1:5278453-5278472 | MS.gene24518:intron | 20.0% |
| ! | AAAGACTAAGATCTAGAAAA+TGG | + | chr1.1:5279785-5279804 | MS.gene24518:intron | 25.0% |
| ! | AAATCGTTAAATATTGCGTA+TGG | + | chr1.1:5279851-5279870 | MS.gene24518:intron | 25.0% |
| ! | AAATTCTGACCACAATTATA+AGG | - | chr1.1:5278351-5278370 | None:intergenic | 25.0% |
| ! | AAGACTAAGATCTAGAAAAT+GGG | + | chr1.1:5279786-5279805 | MS.gene24518:intron | 25.0% |
| ! | AAGTTACAGCCAATAAAAAA+TGG | - | chr1.1:5278879-5278898 | None:intergenic | 25.0% |
| ! | AATAAAAATGGATAAGGGTA+GGG | + | chr1.1:5280020-5280039 | MS.gene24518:intron | 25.0% |
| ! | AATTGGAACAGATTTCAAAT+TGG | - | chr1.1:5279001-5279020 | None:intergenic | 25.0% |
| ! | ATAATCATCTCTTCAAATGA+AGG | + | chr1.1:5281286-5281305 | MS.gene24518:intron | 25.0% |
| ! | ATTCTTCACTAAAGAAAACT+TGG | + | chr1.1:5279594-5279613 | MS.gene24518:intron | 25.0% |
| ! | CAAATTGGAAATTCATAATG+GGG | - | chr1.1:5278986-5279005 | None:intergenic | 25.0% |
| ! | TAATAAAAATGGATAAGGGT+AGG | + | chr1.1:5280019-5280038 | MS.gene24518:intron | 25.0% |
| ! | TATAGAACCATATGATATAG+AGG | + | chr1.1:5280455-5280474 | MS.gene24518:CDS | 25.0% |
| ! | TCTGTGATGTCTATATATTT+AGG | + | chr1.1:5279701-5279720 | MS.gene24518:intron | 25.0% |
| ! | TGGTTATCATAAATCAGAAA+CGG | + | chr1.1:5279871-5279890 | MS.gene24518:intron | 25.0% |
| ! | TTAATGCAAGTTTCATGTTA+AGG | - | chr1.1:5280749-5280768 | None:intergenic | 25.0% |
| ! | TTAATTATGCTATGGATTCT+AGG | - | chr1.1:5279428-5279447 | None:intergenic | 25.0% |
| !! | ATTACAAGAGAGAAAGATTT+TGG | - | chr1.1:5280561-5280580 | None:intergenic | 25.0% |
| !! | CAAACCATGTTTTCAAATAA+CGG | + | chr1.1:5279630-5279649 | MS.gene24518:intron | 25.0% |
| !! | TTAAGCTGTGTTTTGTATAT+AGG | + | chr1.1:5278708-5278727 | MS.gene24518:intron | 25.0% |
| !! | TTAGTGAAGAATTCTTTTAC+TGG | - | chr1.1:5279586-5279605 | None:intergenic | 25.0% |
| !! | TTTAGGTTCATTATTGTACT+TGG | + | chr1.1:5279718-5279737 | MS.gene24518:intron | 25.0% |
| !! | TTTGGTAGTATTATCAAATG+AGG | - | chr1.1:5280072-5280091 | None:intergenic | 25.0% |
| !! | TTTTTATATACTGCTGATGT+TGG | + | chr1.1:5281200-5281219 | MS.gene24518:intron | 25.0% |
| !!! | CTAGATCTTAGTCTTTATTT+TGG | - | chr1.1:5279781-5279800 | None:intergenic | 25.0% |
| !!! | TAATTTTTTTCAGCTGAGTT+CGG | + | chr1.1:5280889-5280908 | MS.gene24518:intron | 25.0% |
| AACACCGTTATTTGAAAACA+TGG | - | chr1.1:5279637-5279656 | None:intergenic | 30.0% | |
| AAGAGAAAAAATGGAGTGAT+AGG | + | chr1.1:5279533-5279552 | MS.gene24518:intron | 30.0% | |
| AAGTATTATACAACAACCCT+AGG | + | chr1.1:5279198-5279217 | MS.gene24518:intron | 30.0% | |
| AATGAACATAATGAGAGGTT+TGG | + | chr1.1:5279925-5279944 | MS.gene24518:intron | 30.0% | |
| ATGTTAATGACAGAGAACAA+AGG | - | chr1.1:5280174-5280193 | None:intergenic | 30.0% | |
| CAATAAAACTCTTCCTGATT+TGG | + | chr1.1:5280620-5280639 | MS.gene24518:CDS | 30.0% | |
| CGATTTCAAAGAATGTATGT+TGG | - | chr1.1:5279837-5279856 | None:intergenic | 30.0% | |
| CTTCTGAATCAAAGTAATTC+TGG | - | chr1.1:5280854-5280873 | None:intergenic | 30.0% | |
| GAAGTAAATGACATCTCATT+GGG | - | chr1.1:5279095-5279114 | None:intergenic | 30.0% | |
| GAGAAGTCTTAATTATGCTA+TGG | - | chr1.1:5279436-5279455 | None:intergenic | 30.0% | |
| GATGGTTTAGTGATATTTAC+TGG | + | chr1.1:5280657-5280676 | MS.gene24518:CDS | 30.0% | |
| GTTTGCTTCAAGAGAAAAAA+TGG | + | chr1.1:5279524-5279543 | MS.gene24518:intron | 30.0% | |
| TAAAGAAAACTTGGCTAAGA+AGG | + | chr1.1:5279603-5279622 | MS.gene24518:intron | 30.0% | |
| TAATATCCTCTGCTTCAAAA+AGG | - | chr1.1:5281435-5281454 | None:intergenic | 30.0% | |
| TCACAAATTGTAAGTGACAA+AGG | - | chr1.1:5279252-5279271 | None:intergenic | 30.0% | |
| TGAAGTAAATGACATCTCAT+TGG | - | chr1.1:5279096-5279115 | None:intergenic | 30.0% | |
| TGAGAAATGAACATAATGAG+AGG | + | chr1.1:5279920-5279939 | MS.gene24518:intron | 30.0% | |
| TGTAATTGTTTCAGATACTC+TGG | + | chr1.1:5280575-5280594 | MS.gene24518:CDS | 30.0% | |
| TGTTAATGACAGAGAACAAA+GGG | - | chr1.1:5280173-5280192 | None:intergenic | 30.0% | |
| TTACCAATAAGTCATTGTGT+TGG | - | chr1.1:5280143-5280162 | None:intergenic | 30.0% | |
| TTGAAGCAAGAAAGAATAAG+AGG | - | chr1.1:5278532-5278551 | None:intergenic | 30.0% | |
| TTGGTTTCTTTCTCTTTGTT+TGG | + | chr1.1:5279944-5279963 | MS.gene24518:intron | 30.0% | |
| TTTCCTTCAAAGTAACTTAG+AGG | + | chr1.1:5281557-5281576 | MS.gene24518:CDS | 30.0% | |
| ! | AGTGATGCTTATTTCTTTCT+GGG | + | chr1.1:5279381-5279400 | MS.gene24518:intron | 30.0% |
| ! | AGTGATTCATAGTTCTTTTG+TGG | + | chr1.1:5278658-5278677 | MS.gene24518:intron | 30.0% |
| ! | ATGCATAAAGTTTTGCATGT+TGG | + | chr1.1:5280372-5280391 | MS.gene24518:CDS | 30.0% |
| ! | TATTTGAAGTTGTGTGTTTG+AGG | + | chr1.1:5281170-5281189 | MS.gene24518:intron | 30.0% |
| ! | TGAATTATGCATCGATAATG+AGG | - | chr1.1:5278378-5278397 | None:intergenic | 30.0% |
| ! | TTTGGATGTTTAAAATCCAC+TGG | + | chr1.1:5279962-5279981 | MS.gene24518:intron | 30.0% |
| !!! | AAGAGTTTTATTGAGGTATC+TGG | - | chr1.1:5280613-5280632 | None:intergenic | 30.0% |
| !!! | AATCAGGAAGAGTTTTATTG+AGG | - | chr1.1:5280620-5280639 | None:intergenic | 30.0% |
| !!! | AGAGTTTTATTGAGGTATCT+GGG | - | chr1.1:5280612-5280631 | None:intergenic | 30.0% |
| !!! | TTTTTTCTCTTGAAGCAAAC+AGG | - | chr1.1:5279524-5279543 | None:intergenic | 30.0% |
| AAGTCATTGTGTTGGATGAA+TGG | - | chr1.1:5280135-5280154 | None:intergenic | 35.0% | |
| ACATAAAGACGCAACTAGTT+TGG | - | chr1.1:5280090-5280109 | None:intergenic | 35.0% | |
| AGTTTGAACTAACTGCTAGT+TGG | - | chr1.1:5280958-5280977 | None:intergenic | 35.0% | |
| ATAAGGCCAATTGACAAAAC+TGG | - | chr1.1:5278334-5278353 | None:intergenic | 35.0% | |
| CATCCAACACAATGACTTAT+TGG | + | chr1.1:5280137-5280156 | MS.gene24518:intron | 35.0% | |
| CCAAAAAGTCTTGCATTGTT+TGG | + | chr1.1:5279023-5279042 | MS.gene24518:intron | 35.0% | |
| CCATATGCTTTCTGTAAAAC+AGG | - | chr1.1:5280345-5280364 | None:intergenic | 35.0% | |
| CGTTTCTAAATTTGGAAGAG+CGG | + | chr1.1:5281342-5281361 | MS.gene24518:CDS | 35.0% | |
| GCAGTTAGTTCAAACTTCAA+AGG | + | chr1.1:5280962-5280981 | MS.gene24518:intron | 35.0% | |
| GTAGCAGACGTTTCTAAATT+TGG | + | chr1.1:5281334-5281353 | MS.gene24518:CDS | 35.0% | |
| TAGACATCACAGACACAAAT+TGG | - | chr1.1:5279694-5279713 | None:intergenic | 35.0% | |
| TAGTTCAAACTTCAAAGGCA+TGG | + | chr1.1:5280967-5280986 | MS.gene24518:intron | 35.0% | |
| TCAAGTTTCCTCTTCCATAT+AGG | + | chr1.1:5280535-5280554 | MS.gene24518:CDS | 35.0% | |
| TCAGCATCCTCTATATCATA+TGG | - | chr1.1:5280465-5280484 | None:intergenic | 35.0% | |
| TGTGGTCTCTAAATTGCAAA+AGG | + | chr1.1:5280410-5280429 | MS.gene24518:CDS | 35.0% | |
| TGTTTGATACGAGAGAAACT+GGG | + | chr1.1:5279480-5279499 | MS.gene24518:intron | 35.0% | |
| TTACTGGTAAGTGCATTTCA+TGG | + | chr1.1:5280673-5280692 | MS.gene24518:intron | 35.0% | |
| TTGGATGAATGGAGAACAAA+GGG | - | chr1.1:5280124-5280143 | None:intergenic | 35.0% | |
| TTGTTTGATACGAGAGAAAC+TGG | + | chr1.1:5279479-5279498 | MS.gene24518:intron | 35.0% | |
| ! | AACTCATTCCTTTTTGCTTC+AGG | + | chr1.1:5281500-5281519 | MS.gene24518:intron | 35.0% |
| ! | AAGTGGAATATCTGGCATTT+TGG | - | chr1.1:5281639-5281658 | None:intergenic | 35.0% |
| ! | AATCTTCTAGAAGAAGTTCC+AGG | - | chr1.1:5278286-5278305 | None:intergenic | 35.0% |
| ! | AGCTGTGTTTTGTATATAGG+TGG | + | chr1.1:5278711-5278730 | MS.gene24518:intron | 35.0% |
| ! | AGGTTTTCCAACTAATCAGA+AGG | + | chr1.1:5281306-5281325 | MS.gene24518:intron | 35.0% |
| ! | CAGTGATGCTTATTTCTTTC+TGG | + | chr1.1:5279380-5279399 | MS.gene24518:intron | 35.0% |
| ! | CCAAACAATGCAAGACTTTT+TGG | - | chr1.1:5279026-5279045 | None:intergenic | 35.0% |
| ! | CCTATAACCTTTTTCCACTT+GGG | - | chr1.1:5280797-5280816 | None:intergenic | 35.0% |
| ! | CTATAACCTTTTTCCACTTG+GGG | - | chr1.1:5280796-5280815 | None:intergenic | 35.0% |
| ! | GCTGTAACTTGTGTCTTATT+TGG | + | chr1.1:5278889-5278908 | MS.gene24518:intron | 35.0% |
| ! | GGAACTTCTTCTAGAAGATT+CGG | + | chr1.1:5278286-5278305 | MS.gene24518:CDS | 35.0% |
| ! | GTTTAAAATCCACTGGAGTT+GGG | + | chr1.1:5279969-5279988 | MS.gene24518:intron | 35.0% |
| ! | TCACAGACACAAATTGGTTT+AGG | - | chr1.1:5279688-5279707 | None:intergenic | 35.0% |
| ! | TCCTATAACCTTTTTCCACT+TGG | - | chr1.1:5280798-5280817 | None:intergenic | 35.0% |
| ! | TCTCATTGGTTACTTGTACA+GGG | + | chr1.1:5278486-5278505 | MS.gene24518:CDS | 35.0% |
| ! | TCTCCTCTAAGTTACTTTGA+AGG | - | chr1.1:5281563-5281582 | None:intergenic | 35.0% |
| ! | TGTTTAAAATCCACTGGAGT+TGG | + | chr1.1:5279968-5279987 | MS.gene24518:intron | 35.0% |
| ! | TTCTCATTGGTTACTTGTAC+AGG | + | chr1.1:5278485-5278504 | MS.gene24518:CDS | 35.0% |
| ! | TTTAAAATCCACTGGAGTTG+GGG | + | chr1.1:5279970-5279989 | MS.gene24518:intron | 35.0% |
| !! | CCTGTTTTACAGAAAGCATA+TGG | + | chr1.1:5280342-5280361 | MS.gene24518:CDS | 35.0% |
| !! | GAGAAAGATTTTGGCCTATA+TGG | - | chr1.1:5280552-5280571 | None:intergenic | 35.0% |
| !! | GTCAATTGGCCTTATAATTG+TGG | + | chr1.1:5278339-5278358 | MS.gene24518:CDS | 35.0% |
| !! | GTTTTGTATATAGGTGGACT+TGG | + | chr1.1:5278717-5278736 | MS.gene24518:intron | 35.0% |
| !! | TACAGATAACTTGTTGATGC+AGG | + | chr1.1:5280282-5280301 | MS.gene24518:intron | 35.0% |
| !!! | AGTTTTATTGAGGTATCTGG+GGG | - | chr1.1:5280610-5280629 | None:intergenic | 35.0% |
| !!! | GAGTTTTATTGAGGTATCTG+GGG | - | chr1.1:5280611-5280630 | None:intergenic | 35.0% |
| !!! | TTTGTTTTTGCAATGTAGGG+AGG | + | chr1.1:5278457-5278476 | MS.gene24518:intron | 35.0% |
| AAATGGATAAGGGTAGGGAT+AGG | + | chr1.1:5280025-5280044 | MS.gene24518:intron | 40.0% | |
| AACCACCTTTGATCCTTAAC+AGG | - | chr1.1:5281048-5281067 | None:intergenic | 40.0% | |
| AAGGTTGAAGGTCTAAATCG+AGG | - | chr1.1:5281416-5281435 | None:intergenic | 40.0% | |
| ACATACAGATACACGACCTA+GGG | - | chr1.1:5279217-5279236 | None:intergenic | 40.0% | |
| AGGTTGAAGGTCTAAATCGA+GGG | - | chr1.1:5281415-5281434 | None:intergenic | 40.0% | |
| AGTGATAGGAAACTTAGCAG+CGG | + | chr1.1:5279547-5279566 | MS.gene24518:intron | 40.0% | |
| CATCTTAGCCTGAAGCAAAA+AGG | - | chr1.1:5281511-5281530 | None:intergenic | 40.0% | |
| CCCAAGTGGAAAAAGGTTAT+AGG | + | chr1.1:5280794-5280813 | MS.gene24518:intron | 40.0% | |
| CCCTGCTAACAGAATCTAAA+CGG | - | chr1.1:5278746-5278765 | None:intergenic | 40.0% | |
| CCGTTTAGATTCTGTTAGCA+GGG | + | chr1.1:5278743-5278762 | MS.gene24518:CDS | 40.0% | |
| CTCTGCTTCAAAAAGGTTGA+AGG | - | chr1.1:5281428-5281447 | None:intergenic | 40.0% | |
| GATTATCAGATGTCAGTGAC+AGG | - | chr1.1:5281272-5281291 | None:intergenic | 40.0% | |
| GTAAAACAGGAATTGCTCGT+TGG | - | chr1.1:5280332-5280351 | None:intergenic | 40.0% | |
| GTGACTTCAAGTGGAATATC+TGG | - | chr1.1:5281647-5281666 | None:intergenic | 40.0% | |
| GTTGGATGAATGGAGAACAA+AGG | - | chr1.1:5280125-5280144 | None:intergenic | 40.0% | |
| TACTTCAGACAAAAACGCGA+GGG | + | chr1.1:5279109-5279128 | MS.gene24518:intron | 40.0% | |
| TGACAAAACTGGAGACGATT+TGG | - | chr1.1:5278323-5278342 | None:intergenic | 40.0% | |
| TGAGATTGCTGCATCAAATG+CGG | + | chr1.1:5279302-5279321 | MS.gene24518:intron | 40.0% | |
| TGATTATTTGTGCAGTGGTG+AGG | + | chr1.1:5280305-5280324 | MS.gene24518:CDS | 40.0% | |
| TGGGAAAATTGCACCTGTTA+AGG | + | chr1.1:5281032-5281051 | MS.gene24518:intron | 40.0% | |
| TTAAAATCCACTGGAGTTGG+GGG | + | chr1.1:5279971-5279990 | MS.gene24518:intron | 40.0% | |
| TTACAACCCCAAGTGGAAAA+AGG | + | chr1.1:5280787-5280806 | MS.gene24518:intron | 40.0% | |
| TTACAACTTACAACCCCAAG+TGG | + | chr1.1:5280780-5280799 | MS.gene24518:intron | 40.0% | |
| TTACTTCAGACAAAAACGCG+AGG | + | chr1.1:5279108-5279127 | MS.gene24518:intron | 40.0% | |
| TTGCACCTGTTAAGGATCAA+AGG | + | chr1.1:5281040-5281059 | MS.gene24518:intron | 40.0% | |
| TTTAGAAACGTCTGCTACCT+TGG | - | chr1.1:5281332-5281351 | None:intergenic | 40.0% | |
| ! | AACTGGAGACGATTTGGATT+TGG | - | chr1.1:5278317-5278336 | None:intergenic | 40.0% |
| ! | AATTCTTTTACTGGCGAGTG+AGG | - | chr1.1:5279577-5279596 | None:intergenic | 40.0% |
| ! | ATCATATGGTTCTATACCCC+AGG | - | chr1.1:5280451-5280470 | None:intergenic | 40.0% |
| ! | ATCTAGTAGCAGTTAGCTTG+CGG | + | chr1.1:5280229-5280248 | MS.gene24518:intron | 40.0% |
| ! | CTCATTGGGTTTAAGAGTGT+AGG | - | chr1.1:5279081-5279100 | None:intergenic | 40.0% |
| ! | CTCATTGGTTACTTGTACAG+GGG | + | chr1.1:5278487-5278506 | MS.gene24518:CDS | 40.0% |
| ! | TTGTATATAGGTGGACTTGG+AGG | + | chr1.1:5278720-5278739 | MS.gene24518:intron | 40.0% |
| ! | TTTTGCTTCAGGCTAAGATG+AGG | + | chr1.1:5281511-5281530 | MS.gene24518:intron | 40.0% |
| !! | AAACTCTTCCTGATTTGGTG+AGG | + | chr1.1:5280625-5280644 | MS.gene24518:CDS | 40.0% |
| !! | AACTCTTCCTGATTTGGTGA+GGG | + | chr1.1:5280626-5280645 | MS.gene24518:CDS | 40.0% |
| !! | CTTTGATTCAGAAGCACTAG+AGG | + | chr1.1:5280860-5280879 | MS.gene24518:intron | 40.0% |
| !! | GATTTTGGCCTATATGGAAG+AGG | - | chr1.1:5280546-5280565 | None:intergenic | 40.0% |
| !! | TCGTCTCCAGTTTTGTCAAT+TGG | + | chr1.1:5278325-5278344 | MS.gene24518:CDS | 40.0% |
| !! | TGCAAGACTTTTTGGCGAAT+TGG | - | chr1.1:5279018-5279037 | None:intergenic | 40.0% |
| !!! | CTTCAACCTTTTTGAAGCAG+AGG | + | chr1.1:5281426-5281445 | MS.gene24518:intron | 40.0% |
| AAATTTGGAAGAGCGGTGAG+TGG | + | chr1.1:5281349-5281368 | MS.gene24518:intron | 45.0% | |
| AAGGAAAAACTTGACCCACC+AGG | - | chr1.1:5281544-5281563 | None:intergenic | 45.0% | |
| AGGCAGCACTAAGCATCAAA+TGG | - | chr1.1:5279408-5279427 | None:intergenic | 45.0% | |
| ATCTCGACAATGCGGTGTAA+TGG | + | chr1.1:5279159-5279178 | MS.gene24518:intron | 45.0% | |
| CACATACAGATACACGACCT+AGG | - | chr1.1:5279218-5279237 | None:intergenic | 45.0% | |
| CACCTGTTAAGGATCAAAGG+TGG | + | chr1.1:5281043-5281062 | MS.gene24518:intron | 45.0% | |
| CGGACAATATCTCGACAATG+CGG | + | chr1.1:5279151-5279170 | MS.gene24518:intron | 45.0% | |
| CTTGCATTGTTTGGCAATCG+AGG | + | chr1.1:5279032-5279051 | MS.gene24518:intron | 45.0% | |
| GAGACCACATAACAAGTGTC+TGG | - | chr1.1:5280399-5280418 | None:intergenic | 45.0% | |
| GAGAGAAACTGGGAGGAATT+TGG | + | chr1.1:5279490-5279509 | MS.gene24518:intron | 45.0% | |
| GATTCTGTTAGCAGGGTTGA+AGG | + | chr1.1:5278750-5278769 | MS.gene24518:CDS | 45.0% | |
| GCAGGTGATTATTTGTGCAG+TGG | + | chr1.1:5280300-5280319 | MS.gene24518:intron | 45.0% | |
| GCCGTTTAGATTCTGTTAGC+AGG | + | chr1.1:5278742-5278761 | MS.gene24518:CDS | 45.0% | |
| GTCGAGATATTGTCCGCTTT+GGG | - | chr1.1:5279147-5279166 | None:intergenic | 45.0% | |
| TAAGGGTAGGGATAGGATGT+AGG | + | chr1.1:5280032-5280051 | MS.gene24518:intron | 45.0% | |
| TCCAACTAATCAGAAGGCCA+AGG | + | chr1.1:5281312-5281331 | MS.gene24518:CDS | 45.0% | |
| TGCAAAGCACAAATCCGTAG+AGG | + | chr1.1:5280492-5280511 | MS.gene24518:CDS | 45.0% | |
| TGTCGAGATATTGTCCGCTT+TGG | - | chr1.1:5279148-5279167 | None:intergenic | 45.0% | |
| TTGATACGAGAGAAACTGGG+AGG | + | chr1.1:5279483-5279502 | MS.gene24518:intron | 45.0% | |
| ! | ACCTTGGCCTTCTGATTAGT+TGG | - | chr1.1:5281316-5281335 | None:intergenic | 45.0% |
| ! | TAGGGAGGCTTGTTTCTCAT+TGG | + | chr1.1:5278472-5278491 | MS.gene24518:intron | 45.0% |
| ! | TATTGAGGTATCTGGGGGAA+AGG | - | chr1.1:5280605-5280624 | None:intergenic | 45.0% |
| !! | AGTTAGCTTGCGGTTCAAGT+AGG | + | chr1.1:5280239-5280258 | MS.gene24518:intron | 45.0% |
| !! | CGGTGTAATGGACTTGAGAT+CGG | + | chr1.1:5279171-5279190 | MS.gene24518:intron | 45.0% |
| !! | TGGTCCAGACACTTGTTATG+TGG | + | chr1.1:5280392-5280411 | MS.gene24518:CDS | 45.0% |
| AGGAAGATGAAACCGAAGCC+TGG | + | chr1.1:5280430-5280449 | MS.gene24518:CDS | 50.0% | |
| CTAAGATGAGGAGTGGATCC+TGG | + | chr1.1:5281523-5281542 | MS.gene24518:CDS | 50.0% | |
| CTACACGCACATTGCCTCTA+CGG | - | chr1.1:5280509-5280528 | None:intergenic | 50.0% | |
| CTTCAGGCTAAGATGAGGAG+TGG | + | chr1.1:5281516-5281535 | MS.gene24518:intron | 50.0% | |
| GAAGATGAAACCGAAGCCTG+GGG | + | chr1.1:5280432-5280451 | MS.gene24518:CDS | 50.0% | |
| GCATCAAATGCGGTGCTTTG+TGG | + | chr1.1:5279312-5279331 | MS.gene24518:intron | 50.0% | |
| GCTGATACCCTCACCAAATC+AGG | - | chr1.1:5280636-5280655 | None:intergenic | 50.0% | |
| GGAAGATGAAACCGAAGCCT+GGG | + | chr1.1:5280431-5280450 | MS.gene24518:CDS | 50.0% | |
| ! | TGGTTCTATACCCCAGGCTT+CGG | - | chr1.1:5280445-5280464 | None:intergenic | 50.0% |
| !! | TTGGTGAGGGTATCAGCTGA+TGG | + | chr1.1:5280639-5280658 | MS.gene24518:CDS | 50.0% |
| AAACGCGAGGGCTCACACAA+AGG | + | chr1.1:5279121-5279140 | MS.gene24518:intron | 55.0% | |
| AAATCCACTGGAGTTGGGGG+TGG | + | chr1.1:5279974-5279993 | MS.gene24518:intron | 55.0% | |
| AGATGAGGAGTGGATCCTGG+TGG | + | chr1.1:5281526-5281545 | MS.gene24518:CDS | 55.0% | |
| GATGAGGAGTGGATCCTGGT+GGG | + | chr1.1:5281527-5281546 | MS.gene24518:CDS | 55.0% | |
| GCTCACACAAAGGCCCAAAG+CGG | + | chr1.1:5279131-5279150 | MS.gene24518:intron | 55.0% | |
| GGTTACTTGTACAGGGGCTC+AGG | + | chr1.1:5278493-5278512 | MS.gene24518:CDS | 55.0% | |
| CACTGGAGTTGGGGGTGGAA+GGG | + | chr1.1:5279979-5279998 | MS.gene24518:intron | 60.0% | |
| CCACTGGAGTTGGGGGTGGA+AGG | + | chr1.1:5279978-5279997 | MS.gene24518:intron | 65.0% | |
| CCTTCCACCCCCAACTCCAG+TGG | - | chr1.1:5279981-5280000 | None:intergenic | 65.0% | |
| TGGAGTTGGGGGTGGAAGGG+AGG | + | chr1.1:5279982-5280001 | MS.gene24518:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 5278268 | 5281674 | 5278268 | ID=MS.gene24518 |
| chr1.1 | mRNA | 5278268 | 5281674 | 5278268 | ID=MS.gene24518.t1;Parent=MS.gene24518 |
| chr1.1 | exon | 5278268 | 5278360 | 5278268 | ID=MS.gene24518.t1.exon1;Parent=MS.gene24518.t1 |
| chr1.1 | CDS | 5278268 | 5278360 | 5278268 | ID=cds.MS.gene24518.t1;Parent=MS.gene24518.t1 |
| chr1.1 | exon | 5278475 | 5278514 | 5278475 | ID=MS.gene24518.t1.exon2;Parent=MS.gene24518.t1 |
| chr1.1 | CDS | 5278475 | 5278514 | 5278475 | ID=cds.MS.gene24518.t1;Parent=MS.gene24518.t1 |
| chr1.1 | exon | 5278730 | 5278771 | 5278730 | ID=MS.gene24518.t1.exon3;Parent=MS.gene24518.t1 |
| chr1.1 | CDS | 5278730 | 5278771 | 5278730 | ID=cds.MS.gene24518.t1;Parent=MS.gene24518.t1 |
| chr1.1 | exon | 5280304 | 5280678 | 5280304 | ID=MS.gene24518.t1.exon4;Parent=MS.gene24518.t1 |
| chr1.1 | CDS | 5280304 | 5280678 | 5280304 | ID=cds.MS.gene24518.t1;Parent=MS.gene24518.t1 |
| chr1.1 | exon | 5281308 | 5281363 | 5281308 | ID=MS.gene24518.t1.exon5;Parent=MS.gene24518.t1 |
| chr1.1 | CDS | 5281308 | 5281363 | 5281308 | ID=cds.MS.gene24518.t1;Parent=MS.gene24518.t1 |
| chr1.1 | exon | 5281522 | 5281674 | 5281522 | ID=MS.gene24518.t1.exon6;Parent=MS.gene24518.t1 |
| chr1.1 | CDS | 5281522 | 5281674 | 5281522 | ID=cds.MS.gene24518.t1;Parent=MS.gene24518.t1 |
| Gene Sequence |
| Protein sequence |
