Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24549.t1 | XP_003589022.1 | 97.4 | 350 | 9 | 0 | 1 | 350 | 1 | 350 | 9.00E-194 | 686 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24549.t1 | Q944K3 | 78.1 | 338 | 74 | 0 | 6 | 343 | 47 | 384 | 3.6e-151 | 535.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24549.t1 | G7IB89 | 97.4 | 350 | 9 | 0 | 1 | 350 | 1 | 350 | 6.5e-194 | 686.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051622 | MS.gene24549 | 0.946546 | 3.75E-105 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene24549 | MS.gene00617 | PPI |
| MS.gene24549 | MS.gene047200 | PPI |
| MS.gene24549 | MS.gene072058 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24549.t1 | MTR_1g016440 | 97.429 | 350 | 9 | 0 | 1 | 350 | 1 | 350 | 0.0 | 700 |
| MS.gene24549.t1 | MTR_1g016440 | 94.505 | 273 | 12 | 1 | 1 | 273 | 1 | 270 | 0.0 | 526 |
| MS.gene24549.t1 | MTR_4g109500 | 25.948 | 343 | 212 | 12 | 32 | 344 | 18 | 348 | 2.12e-20 | 92.8 |
| MS.gene24549.t1 | MTR_4g109500 | 25.948 | 343 | 212 | 12 | 32 | 344 | 18 | 348 | 2.31e-20 | 92.8 |
| MS.gene24549.t1 | MTR_3g077160 | 25.342 | 292 | 183 | 9 | 52 | 320 | 45 | 324 | 6.33e-16 | 79.0 |
| MS.gene24549.t1 | MTR_5g004640 | 26.354 | 277 | 177 | 9 | 52 | 311 | 40 | 306 | 9.04e-16 | 78.6 |
| MS.gene24549.t1 | MTR_4g055080 | 26.263 | 297 | 181 | 9 | 52 | 325 | 24 | 305 | 1.31e-15 | 77.8 |
| MS.gene24549.t1 | MTR_3g118535 | 26.374 | 273 | 182 | 7 | 52 | 311 | 37 | 303 | 3.16e-15 | 77.0 |
| MS.gene24549.t1 | MTR_4g055080 | 26.871 | 294 | 174 | 10 | 58 | 325 | 2 | 280 | 3.34e-15 | 76.6 |
| MS.gene24549.t1 | MTR_8g093800 | 25.587 | 383 | 226 | 16 | 3 | 335 | 10 | 383 | 9.81e-14 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24549.t1 | AT5G26040 | 77.713 | 341 | 76 | 0 | 3 | 343 | 44 | 384 | 0.0 | 550 |
| MS.gene24549.t1 | AT5G26040 | 71.302 | 338 | 69 | 1 | 6 | 343 | 47 | 356 | 1.16e-173 | 487 |
| MS.gene24549.t1 | AT5G63110 | 33.333 | 204 | 119 | 8 | 128 | 320 | 118 | 315 | 5.60e-18 | 85.1 |
| MS.gene24549.t1 | AT4G38130 | 26.374 | 273 | 182 | 6 | 52 | 311 | 36 | 302 | 5.06e-17 | 82.4 |
| MS.gene24549.t1 | AT4G38130 | 26.374 | 273 | 182 | 6 | 52 | 311 | 36 | 302 | 6.37e-17 | 82.0 |
| MS.gene24549.t1 | AT5G61060 | 26.774 | 310 | 202 | 9 | 32 | 320 | 26 | 331 | 2.95e-16 | 80.5 |
| MS.gene24549.t1 | AT1G08460 | 23.301 | 309 | 210 | 7 | 36 | 325 | 23 | 323 | 1.87e-15 | 77.0 |
| MS.gene24549.t1 | AT5G61060 | 26.752 | 314 | 201 | 10 | 32 | 320 | 26 | 335 | 1.10e-14 | 75.5 |
| MS.gene24549.t1 | AT5G61070 | 26.132 | 287 | 173 | 12 | 62 | 320 | 89 | 364 | 1.78e-13 | 72.0 |
| MS.gene24549.t1 | AT4G33470 | 25.806 | 186 | 129 | 3 | 159 | 335 | 201 | 386 | 3.06e-12 | 67.8 |
| MS.gene24549.t1 | AT1G08460 | 22.780 | 259 | 176 | 5 | 36 | 277 | 23 | 274 | 5.43e-12 | 66.2 |
Find 85 sgRNAs with CRISPR-Local
Find 306 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCGTTTGATTCATCTAAA+TGG | 0.178374 | 1.2:-6088068 | MS.gene24549:CDS |
| CATCACTGTTCTGCAGAAAA+TGG | 0.209362 | 1.2:-6086367 | MS.gene24549:CDS |
| TGTAAGTTTCTTAATTCTTT+TGG | 0.262598 | 1.2:-6088036 | MS.gene24549:CDS |
| AAAACCTCCTCCCACATTAA+TGG | 0.273424 | 1.2:+6086390 | None:intergenic |
| CCTATTGTCATGCTCACTTC+AGG | 0.309644 | 1.2:-6084039 | MS.gene24549:intron |
| GATCACTGTTATGCAGTCTT+TGG | 0.318259 | 1.2:+6083300 | None:intergenic |
| CTGATGTGTTTCAAGGTTGC+TGG | 0.321961 | 1.2:-6084398 | MS.gene24549:intron |
| TTCCTAATGGATCACCTTCT+AGG | 0.332310 | 1.2:+6084327 | None:intergenic |
| ATTACCTTCAACCTTCCTAA+TGG | 0.340809 | 1.2:+6084314 | None:intergenic |
| GGAATTGGTTGTTACTTTAG+AGG | 0.343735 | 1.2:+6088307 | None:intergenic |
| TCCGTTTGATTCATCTAAAT+GGG | 0.360447 | 1.2:-6088067 | MS.gene24549:CDS |
| TTTACCAAAGGATATATTCC+AGG | 0.381434 | 1.2:+6086008 | None:intergenic |
| TCTTATGACATATCATTTCT+CGG | 0.392913 | 1.2:-6088191 | MS.gene24549:CDS |
| AGAGTTTGGTAGAGAGGATA+CGG | 0.410858 | 1.2:+6088345 | None:intergenic |
| TCAAGGAAATGGTCATGAAA+TGG | 0.415584 | 1.2:-6086159 | MS.gene24549:CDS |
| GCAGGTTGGAGGAACTATAT+TGG | 0.416403 | 1.2:-6086443 | MS.gene24549:intron |
| CGAAAGTACCTCAATTATCT+TGG | 0.426478 | 1.2:+6086916 | None:intergenic |
| GATTTACCTGTTTCCTGAAT+GGG | 0.426483 | 1.2:+6086528 | None:intergenic |
| AAATCAGAAAGTTGAAGTTA+AGG | 0.428946 | 1.2:-6084936 | MS.gene24549:intron |
| GGATTTACCTGTTTCCTGAA+TGG | 0.439631 | 1.2:+6086527 | None:intergenic |
| CTTGATGCACATCAAGGAAA+TGG | 0.443894 | 1.2:-6086170 | MS.gene24549:CDS |
| CCTGAAGTGAGCATGACAAT+AGG | 0.446956 | 1.2:+6084039 | None:intergenic |
| CTCAATTATCTTGGCAACAT+TGG | 0.449351 | 1.2:+6086925 | None:intergenic |
| TGTTCTATATTAGGATTATG+AGG | 0.464505 | 1.2:-6084972 | MS.gene24549:intron |
| AGGTACGTCGAAGTAGAGTT+TGG | 0.467538 | 1.2:+6088331 | None:intergenic |
| CATGAGAGTGTCGTCGGAAG+CGG | 0.470829 | 1.2:+6088373 | None:intergenic |
| TAACCCTGGAATATATCCTT+TGG | 0.472285 | 1.2:-6086012 | MS.gene24549:intron |
| GGCAGACCGAGTCTACATTC+TGG | 0.475079 | 1.2:-6086042 | MS.gene24549:intron |
| GAGTTGTTAGTTTATAATGC+TGG | 0.477061 | 1.2:-6084359 | MS.gene24549:CDS |
| TTTACGTTGCACAAGACCAT+TGG | 0.481724 | 1.2:+6086559 | None:intergenic |
| GAATTGGTTGTTACTTTAGA+GGG | 0.487635 | 1.2:+6088308 | None:intergenic |
| TTGTTCAGTTGAATATATCA+AGG | 0.488156 | 1.2:-6086294 | MS.gene24549:intron |
| TTACGTTGCACAAGACCATT+GGG | 0.493432 | 1.2:+6086560 | None:intergenic |
| AAATGATATGTCATAAGAAT+CGG | 0.499520 | 1.2:+6088196 | None:intergenic |
| ATTGATCTTGATGCACATCA+AGG | 0.501233 | 1.2:-6086176 | MS.gene24549:CDS |
| ATCCTAGAAGGTGATCCATT+AGG | 0.507010 | 1.2:-6084329 | MS.gene24549:CDS |
| GTTTCAAGGTTGCTGGGCGA+AGG | 0.512547 | 1.2:-6084391 | MS.gene24549:intron |
| CCTGTGGCATTGTTTCCCAA+TGG | 0.518965 | 1.2:-6086575 | MS.gene24549:CDS |
| AACTTGCGAAGGAGAGAGGA+TGG | 0.521425 | 1.2:-6086414 | MS.gene24549:CDS |
| CAATGTTGCCAAGATAATTG+AGG | 0.525266 | 1.2:-6086924 | MS.gene24549:intron |
| GATACATGAAGTCCAGTGCT+AGG | 0.527724 | 1.2:-6083383 | MS.gene24549:CDS |
| GCTGGAACTGACATCCTAGA+AGG | 0.531175 | 1.2:-6084341 | MS.gene24549:CDS |
| CGAAGTAGAGTTTGGTAGAG+AGG | 0.537218 | 1.2:+6088339 | None:intergenic |
| TGATCCATTAGGAAGGTTGA+AGG | 0.537244 | 1.2:-6084318 | MS.gene24549:intron |
| TCTATTGGCCATACTATCAT+CGG | 0.540934 | 1.2:+6086130 | None:intergenic |
| TTATACTAATGGCAGGTTGG+AGG | 0.547276 | 1.2:-6086454 | MS.gene24549:intron |
| GAGAGGATGGGCCATTAATG+TGG | 0.551476 | 1.2:-6086401 | MS.gene24549:CDS |
| TCTCTAAGAGCAATTCCATC+GGG | 0.554567 | 1.2:+6084099 | None:intergenic |
| ATCTCTAAGAGCAATTCCAT+CGG | 0.557639 | 1.2:+6084098 | None:intergenic |
| GCGAAACTTGCGAAGGAGAG+AGG | 0.559522 | 1.2:-6086418 | MS.gene24549:CDS |
| CCCCATTTAGATGAATCAAA+CGG | 0.560065 | 1.2:+6088066 | None:intergenic |
| GCATTATAAACTAACAACTC+AGG | 0.561437 | 1.2:+6084362 | None:intergenic |
| ATCATACTTGAATAGTCTGA+AGG | 0.568219 | 1.2:-6086954 | MS.gene24549:CDS |
| ATCTGCGATGACCCTAGCAC+TGG | 0.569570 | 1.2:+6083371 | None:intergenic |
| TTACCAAAGGATATATTCCA+GGG | 0.571772 | 1.2:+6086009 | None:intergenic |
| TGATGTGTTTCAAGGTTGCT+GGG | 0.586550 | 1.2:-6084397 | MS.gene24549:intron |
| TGGGCCATTAATGTGGGAGG+AGG | 0.588432 | 1.2:-6086394 | MS.gene24549:CDS |
| AGAGGATGGGCCATTAATGT+GGG | 0.590581 | 1.2:-6086400 | MS.gene24549:CDS |
| TGCATGCAGATTAGTCCCGA+TGG | 0.591142 | 1.2:-6084114 | MS.gene24549:intron |
| TGTTCTGCAGAAAATGGTGG+TGG | 0.609323 | 1.2:-6086361 | MS.gene24549:CDS |
| TCATCTTTAGAAGCTTCAAG+AGG | 0.609813 | 1.2:+6087985 | None:intergenic |
| TTGGGAAACAATGCCACAGG+AGG | 0.609991 | 1.2:+6086578 | None:intergenic |
| AAATGCTTGATAGAAACAAG+TGG | 0.610551 | 1.2:-6083327 | MS.gene24549:CDS |
| TCGTCGGAAGCGGAACAAGA+AGG | 0.614373 | 1.2:+6088383 | None:intergenic |
| TTGGTTGTTACTTTAGAGGG+AGG | 0.615819 | 1.2:+6088311 | None:intergenic |
| CCATTGGGAAACAATGCCAC+AGG | 0.616536 | 1.2:+6086575 | None:intergenic |
| CATTATAAACTAACAACTCA+GGG | 0.617843 | 1.2:+6084363 | None:intergenic |
| ATACATGAAGTCCAGTGCTA+GGG | 0.620185 | 1.2:-6083382 | MS.gene24549:CDS |
| TTCTAAAGATGATCTTCTAG+TGG | 0.620264 | 1.2:-6087974 | MS.gene24549:intron |
| TAGAAGGTGATCCATTAGGA+AGG | 0.638906 | 1.2:-6084325 | MS.gene24549:CDS |
| CCGTTTGATTCATCTAAATG+GGG | 0.639673 | 1.2:-6088066 | MS.gene24549:CDS |
| GTTGCGCATGAGAGTGTCGT+CGG | 0.640150 | 1.2:+6088367 | None:intergenic |
| CAAGAAGGAGGCGAAGACAT+CGG | 0.642374 | 1.2:+6088398 | None:intergenic |
| ACTTGCGAAGGAGAGAGGAT+GGG | 0.644649 | 1.2:-6086413 | MS.gene24549:CDS |
| ATTCTGGATATGTATAACCC+TGG | 0.648113 | 1.2:-6086026 | MS.gene24549:CDS |
| GAAATTAGATGAAGCACTCG+AGG | 0.655013 | 1.2:-6084791 | MS.gene24549:intron |
| TAAGAATCGGAGTAGATAAG+CGG | 0.660736 | 1.2:+6088209 | None:intergenic |
| ACATATCCAGAATGTAGACT+CGG | 0.660904 | 1.2:+6086036 | None:intergenic |
| GGATGGGCCATTAATGTGGG+AGG | 0.673443 | 1.2:-6086397 | MS.gene24549:CDS |
| TGGGAAACAATGCCACAGGA+GGG | 0.674322 | 1.2:+6086579 | None:intergenic |
| TCGGAAGCGGAACAAGAAGG+AGG | 0.682976 | 1.2:+6088386 | None:intergenic |
| CACTGTTCTGCAGAAAATGG+TGG | 0.684154 | 1.2:-6086364 | MS.gene24549:CDS |
| ATTGGCTGCGAAACTTGCGA+AGG | 0.694927 | 1.2:-6086425 | MS.gene24549:CDS |
| TCAACTGAACAAAAGCAAAG+CGG | 0.698918 | 1.2:+6086305 | None:intergenic |
| ATAAATATAGGTCCCTCCTG+TGG | 0.699886 | 1.2:-6086591 | MS.gene24549:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAGGTTTTTATTTAAAAAA+AGG | + | chr1.2:6086385-6086404 | None:intergenic | 10.0% |
| !! | ACTTAATATAGTTGAATAAT+TGG | + | chr1.2:6087052-6087071 | None:intergenic | 15.0% |
| !! | ATATTGGAAAAATGTTTATA+AGG | + | chr1.2:6084560-6084579 | None:intergenic | 15.0% |
| !! | ATGAATAAAAAAACTAAGTA+AGG | + | chr1.2:6087284-6087303 | None:intergenic | 15.0% |
| !! | TATTGGAAAAATGTTTATAA+GGG | + | chr1.2:6084559-6084578 | None:intergenic | 15.0% |
| !! | TCATATAAAACAATTTAACA+TGG | + | chr1.2:6084593-6084612 | None:intergenic | 15.0% |
| !! | TGACATAAAGTAATAAATAT+AGG | - | chr1.2:6085070-6085089 | MS.gene24549:intron | 15.0% |
| !! | TTAAGATAATAAATTGAAGA+TGG | + | chr1.2:6086685-6086704 | None:intergenic | 15.0% |
| !! | TTATATTAAAAGTAACAATC+AGG | - | chr1.2:6087257-6087276 | MS.gene24549:intron | 15.0% |
| !! | TTTATATATCTCTGTTTATT+GGG | - | chr1.2:6086293-6086312 | MS.gene24549:intron | 15.0% |
| !!! | AAAATAAAAAGTATTTATCC+TGG | - | chr1.2:6087778-6087797 | MS.gene24549:intron | 15.0% |
| !!! | AAACTTTTATTAAATCGATT+TGG | - | chr1.2:6087447-6087466 | MS.gene24549:intron | 15.0% |
| !!! | AAATTATTTGCTTTTAGTTT+AGG | - | chr1.2:6086637-6086656 | MS.gene24549:intron | 15.0% |
| !!! | AATTTTTCATTTCTTGTTTA+AGG | - | chr1.2:6088295-6088314 | MS.gene24549:intron | 15.0% |
| !!! | ACTTTTAAGTAAAAAACAAA+TGG | + | chr1.2:6088075-6088094 | None:intergenic | 15.0% |
| !!! | TACTTTTTATTTTATTTTCC+AGG | + | chr1.2:6087771-6087790 | None:intergenic | 15.0% |
| !!! | TATTTTTTTAATTCTACTTG+TGG | - | chr1.2:6085954-6085973 | MS.gene24549:intron | 15.0% |
| !!! | TTCATAATAATTTTTCTCTA+AGG | - | chr1.2:6087935-6087954 | MS.gene24549:intron | 15.0% |
| !!! | TTTATTGATAATGTTATCTT+AGG | - | chr1.2:6088103-6088122 | MS.gene24549:intron | 15.0% |
| !!! | TTTTACAAGTTAAATTCTTA+AGG | + | chr1.2:6084491-6084510 | None:intergenic | 15.0% |
| !!! | TTTTTCAATTAAGATTACAA+AGG | - | chr1.2:6084083-6084102 | MS.gene24549:CDS | 15.0% |
| !!! | TTTTTGTTTATTTTTGTTTC+AGG | - | chr1.2:6083611-6083630 | MS.gene24549:intron | 15.0% |
| !! | AAAAAAGTAGAAGTTAGTTA+TGG | + | chr1.2:6083420-6083439 | None:intergenic | 20.0% |
| !! | AAACATTATCTTCACTTAAA+AGG | - | chr1.2:6086047-6086066 | MS.gene24549:intron | 20.0% |
| !! | AAATGATATGTCATAAGAAT+CGG | + | chr1.2:6083510-6083529 | None:intergenic | 20.0% |
| !! | AAATGCAGTATAAAATATCT+AGG | + | chr1.2:6085731-6085750 | None:intergenic | 20.0% |
| !! | AATAAATGAACTTCACAAAA+CGG | - | chr1.2:6084168-6084187 | MS.gene24549:intron | 20.0% |
| !! | AATATAGTTGAATAATTGGA+TGG | + | chr1.2:6087048-6087067 | None:intergenic | 20.0% |
| !! | AATTTCAACAATCAAAATGA+GGG | - | chr1.2:6087110-6087129 | MS.gene24549:intron | 20.0% |
| !! | AGAATTGAAAGAAACTTATA+TGG | - | chr1.2:6084946-6084965 | MS.gene24549:CDS | 20.0% |
| !! | ATATAGTTGAATAATTGGAT+GGG | + | chr1.2:6087047-6087066 | None:intergenic | 20.0% |
| !! | ATTTATTACTTTATGTCAGT+AGG | + | chr1.2:6085068-6085087 | None:intergenic | 20.0% |
| !! | CTTTATATATCTCTGTTTAT+TGG | - | chr1.2:6086292-6086311 | MS.gene24549:intron | 20.0% |
| !! | GAATTTGAATACTGAAAAAA+TGG | - | chr1.2:6086407-6086426 | MS.gene24549:CDS | 20.0% |
| !! | TAATAATCAATTAAGCACTT+TGG | - | chr1.2:6083548-6083567 | MS.gene24549:intron | 20.0% |
| !! | TAATTTCAACAATCAAAATG+AGG | - | chr1.2:6087109-6087128 | MS.gene24549:intron | 20.0% |
| !! | TTCAGTATTCAAATTCAAAT+AGG | + | chr1.2:6086403-6086422 | None:intergenic | 20.0% |
| !! | TTTAATATAACTTCTTCAAC+TGG | + | chr1.2:6087247-6087266 | None:intergenic | 20.0% |
| !! | TTTATCATCTAGACTTTAAT+TGG | - | chr1.2:6083788-6083807 | MS.gene24549:intron | 20.0% |
| !! | TTTATTACTTTATGTCAGTA+GGG | + | chr1.2:6085067-6085086 | None:intergenic | 20.0% |
| !! | TTTGATTGTTGAAATTAAGA+TGG | + | chr1.2:6087106-6087125 | None:intergenic | 20.0% |
| !!! | AAAGAGTTGATCATATTATT+GGG | + | chr1.2:6086353-6086372 | None:intergenic | 20.0% |
| !!! | AGTTTCTTTAAGAAAGTAAT+AGG | - | chr1.2:6087493-6087512 | MS.gene24549:intron | 20.0% |
| !!! | ATTTTAACATTCGAGTTAAA+TGG | - | chr1.2:6087907-6087926 | MS.gene24549:intron | 20.0% |
| !!! | GAAACACATTTTCATATTAT+GGG | + | chr1.2:6086605-6086624 | None:intergenic | 20.0% |
| !!! | TGAAACACATTTTCATATTA+TGG | + | chr1.2:6086606-6086625 | None:intergenic | 20.0% |
| !!! | TGTAAGTTTCTTAATTCTTT+TGG | - | chr1.2:6083667-6083686 | MS.gene24549:intron | 20.0% |
| !!! | TTATACTGCATTTTATTATG+AGG | - | chr1.2:6085738-6085757 | MS.gene24549:intron | 20.0% |
| !!! | TTATTTTCCAGGATAAAAAT+GGG | + | chr1.2:6087760-6087779 | None:intergenic | 20.0% |
| !!! | TTTATTTTCCAGGATAAAAA+TGG | + | chr1.2:6087761-6087780 | None:intergenic | 20.0% |
| ! | AAAAACAACAGAAATACGAA+GGG | + | chr1.2:6087166-6087185 | None:intergenic | 25.0% |
| ! | AAAAATCCTAAGAGATATGA+AGG | + | chr1.2:6085619-6085638 | None:intergenic | 25.0% |
| ! | AAATCAGAAAGTTGAAGTTA+AGG | - | chr1.2:6086767-6086786 | MS.gene24549:intron | 25.0% |
| ! | AAATTGTCTGTATAATCTTC+AGG | - | chr1.2:6085495-6085514 | MS.gene24549:intron | 25.0% |
| ! | AATATTCAATGGGTATGTTT+GGG | + | chr1.2:6087211-6087230 | None:intergenic | 25.0% |
| ! | AATTGTCTGTATAATCTTCA+GGG | - | chr1.2:6085496-6085515 | MS.gene24549:intron | 25.0% |
| ! | ACATGGTGTATATATCATAT+TGG | + | chr1.2:6084576-6084595 | None:intergenic | 25.0% |
| ! | ACTTGATTAACATCTCAAAT+AGG | + | chr1.2:6088269-6088288 | None:intergenic | 25.0% |
| ! | AGTCTTCAAATAAAAATTGC+CGG | - | chr1.2:6085445-6085464 | MS.gene24549:intron | 25.0% |
| ! | ATAAATGAACTTCACAAAAC+GGG | - | chr1.2:6084169-6084188 | MS.gene24549:intron | 25.0% |
| ! | ATAAGATTCAATTCACGTTT+AGG | - | chr1.2:6088133-6088152 | MS.gene24549:intron | 25.0% |
| ! | ATAATCCTAATATAGAACAC+AGG | + | chr1.2:6086730-6086749 | None:intergenic | 25.0% |
| ! | ATAATGACAAAGCAATTAGA+AGG | + | chr1.2:6086565-6086584 | None:intergenic | 25.0% |
| ! | ATATGAGCCTATATACTATA+GGG | + | chr1.2:6084261-6084280 | None:intergenic | 25.0% |
| ! | ATGACTAAAATTGACAAGAT+TGG | - | chr1.2:6084279-6084298 | MS.gene24549:intron | 25.0% |
| ! | CATTATAAACTAACAACTCA+GGG | + | chr1.2:6087343-6087362 | None:intergenic | 25.0% |
| ! | GAAAAGGGAAAAAAAGAAAA+TGG | + | chr1.2:6084709-6084728 | None:intergenic | 25.0% |
| ! | GTCACATTTGATACATTATA+TGG | + | chr1.2:6087852-6087871 | None:intergenic | 25.0% |
| ! | GTGCTAGAAATTTGAAAATT+TGG | - | chr1.2:6086213-6086232 | MS.gene24549:intron | 25.0% |
| ! | GTTATAAAAATTTATCGTGC+TGG | - | chr1.2:6084920-6084939 | MS.gene24549:intron | 25.0% |
| ! | TAATGTATCAAATGTGACTA+AGG | - | chr1.2:6087854-6087873 | MS.gene24549:intron | 25.0% |
| ! | TCTTATGACATATCATTTCT+CGG | - | chr1.2:6083512-6083531 | MS.gene24549:intron | 25.0% |
| ! | TGATCTTACTCTTATACTAA+TGG | - | chr1.2:6085238-6085257 | MS.gene24549:intron | 25.0% |
| ! | TGTTAATAGAATAAGCTAAC+CGG | + | chr1.2:6085467-6085486 | None:intergenic | 25.0% |
| ! | TGTTCTATATTAGGATTATG+AGG | - | chr1.2:6086731-6086750 | MS.gene24549:intron | 25.0% |
| ! | TTCACTATAAGCTCAAAAAT+TGG | + | chr1.2:6083923-6083942 | None:intergenic | 25.0% |
| ! | TTGGTTGAATTTATAGTGTT+TGG | + | chr1.2:6084418-6084437 | None:intergenic | 25.0% |
| ! | TTGTTCAGTTGAATATATCA+AGG | - | chr1.2:6085409-6085428 | MS.gene24549:intron | 25.0% |
| !! | ATCAATGTCCTTTTTCTATT+AGG | - | chr1.2:6086160-6086179 | MS.gene24549:CDS | 25.0% |
| !! | CAAAGAGTTGATCATATTAT+TGG | + | chr1.2:6086354-6086373 | None:intergenic | 25.0% |
| !! | TATTTTCCAGGATAAAAATG+GGG | + | chr1.2:6087759-6087778 | None:intergenic | 25.0% |
| !! | TTAGAGATGAGAAAGTTTTT+CGG | - | chr1.2:6087620-6087639 | MS.gene24549:intron | 25.0% |
| !! | TTTTTCCCTTTTCAATCTAA+AGG | - | chr1.2:6084716-6084735 | MS.gene24549:intron | 25.0% |
| !!! | AGCAATTCTAGAATATTCAA+TGG | + | chr1.2:6087222-6087241 | None:intergenic | 25.0% |
| !!! | ATTTGTTTCCTTTGTTTTTC+TGG | - | chr1.2:6084991-6085010 | MS.gene24549:intron | 25.0% |
| !!! | CAAATGATTTGCTAAAACAA+TGG | - | chr1.2:6086510-6086529 | MS.gene24549:intron | 25.0% |
| !!! | GCAATTCTAGAATATTCAAT+GGG | + | chr1.2:6087221-6087240 | None:intergenic | 25.0% |
| !!! | GTCATATTTTTTGACTATCA+TGG | + | chr1.2:6087830-6087849 | None:intergenic | 25.0% |
| !!! | TCTTAATTCTTTTGGTGTTT+TGG | - | chr1.2:6083675-6083694 | MS.gene24549:intron | 25.0% |
| !!! | TGCATATACCTTTGTTTTTA+AGG | - | chr1.2:6086322-6086341 | MS.gene24549:CDS | 25.0% |
| !!! | TTTTATTAAATCGATTTGGC+TGG | - | chr1.2:6087451-6087470 | MS.gene24549:intron | 25.0% |
| !!! | TTTTCATTTCTTGTTTAAGG+TGG | - | chr1.2:6088298-6088317 | MS.gene24549:intron | 25.0% |
| AAAACAACAGAAATACGAAG+GGG | + | chr1.2:6087165-6087184 | None:intergenic | 30.0% | |
| AAATGCTTGATAGAAACAAG+TGG | - | chr1.2:6088376-6088395 | MS.gene24549:CDS | 30.0% | |
| AAGTAGCTAATAACTGATAG+CGG | + | chr1.2:6084450-6084469 | None:intergenic | 30.0% | |
| ACAAGAGAGAGAAATTCTAT+TGG | + | chr1.2:6085591-6085610 | None:intergenic | 30.0% | |
| ACAGACTTCAAGTAAAAAGT+TGG | + | chr1.2:6085200-6085219 | None:intergenic | 30.0% | |
| AGAGCTTCACAGAAAAAAAA+AGG | + | chr1.2:6084876-6084895 | None:intergenic | 30.0% | |
| AGATATACTCAAAACACTTC+TGG | - | chr1.2:6087882-6087901 | MS.gene24549:intron | 30.0% | |
| AGTGAATAGCTTATAGCTTA+TGG | - | chr1.2:6083937-6083956 | MS.gene24549:intron | 30.0% | |
| AGTGTACCTTTAGATTGAAA+AGG | + | chr1.2:6084725-6084744 | None:intergenic | 30.0% | |
| ATATCCATTATCAGAGAATG+TGG | + | chr1.2:6087971-6087990 | None:intergenic | 30.0% | |
| ATCATACTTGAATAGTCTGA+AGG | - | chr1.2:6084749-6084768 | MS.gene24549:intron | 30.0% | |
| ATCCGTTTGATTCATCTAAA+TGG | - | chr1.2:6083635-6083654 | MS.gene24549:intron | 30.0% | |
| ATTTATCTGAGAGCTTACTT+TGG | - | chr1.2:6086268-6086287 | MS.gene24549:intron | 30.0% | |
| ATTTCCTTTGGTAAAAACAG+TGG | - | chr1.2:6084022-6084041 | MS.gene24549:intron | 30.0% | |
| CATATGAGCCTATATACTAT+AGG | + | chr1.2:6084262-6084281 | None:intergenic | 30.0% | |
| CTAATCCACCTAATAGAAAA+AGG | + | chr1.2:6086171-6086190 | None:intergenic | 30.0% | |
| CTTCACAGAAAAAAAAAGGA+AGG | + | chr1.2:6084872-6084891 | None:intergenic | 30.0% | |
| GAAAAACAACAGAAATACGA+AGG | + | chr1.2:6087167-6087186 | None:intergenic | 30.0% | |
| GAATATTCAATGGGTATGTT+TGG | + | chr1.2:6087212-6087231 | None:intergenic | 30.0% | |
| GCATTATAAACTAACAACTC+AGG | + | chr1.2:6087344-6087363 | None:intergenic | 30.0% | |
| GTAGAAGTTAGTTATGGAAT+TGG | + | chr1.2:6083414-6083433 | None:intergenic | 30.0% | |
| GTGTACCTTTAGATTGAAAA+GGG | + | chr1.2:6084724-6084743 | None:intergenic | 30.0% | |
| GTTGAAGGTAATGTAATTCT+TGG | - | chr1.2:6087400-6087419 | MS.gene24549:intron | 30.0% | |
| TAATTAAACGCTATCAGAGA+GGG | + | chr1.2:6083883-6083902 | None:intergenic | 30.0% | |
| TCAATTCACGTTTAGGAAAA+TGG | - | chr1.2:6088140-6088159 | MS.gene24549:intron | 30.0% | |
| TCCGTTTGATTCATCTAAAT+GGG | - | chr1.2:6083636-6083655 | MS.gene24549:intron | 30.0% | |
| TTACCAAAGGATATATTCCA+GGG | + | chr1.2:6085697-6085716 | None:intergenic | 30.0% | |
| TTCTGTTACCAGAAAAACAA+AGG | + | chr1.2:6085002-6085021 | None:intergenic | 30.0% | |
| TTCTTCCTGTGTTCTATATT+AGG | - | chr1.2:6086722-6086741 | MS.gene24549:intron | 30.0% | |
| TTGAAGAAAGTTCGCTAAAA+AGG | + | chr1.2:6088234-6088253 | None:intergenic | 30.0% | |
| TTTACCAAAGGATATATTCC+AGG | + | chr1.2:6085698-6085717 | None:intergenic | 30.0% | |
| ! | AATGTCCTTTTTCTATTAGG+TGG | - | chr1.2:6086163-6086182 | MS.gene24549:CDS | 30.0% |
| ! | CAAGATAATTGAGGTACTTT+CGG | - | chr1.2:6084788-6084807 | MS.gene24549:intron | 30.0% |
| ! | GAGTTGTTAGTTTATAATGC+TGG | - | chr1.2:6087344-6087363 | MS.gene24549:intron | 30.0% |
| ! | TACTGCATTTTATTATGAGG+CGG | - | chr1.2:6085741-6085760 | MS.gene24549:intron | 30.0% |
| ! | TCAAACTGATGCATTTTAAG+CGG | - | chr1.2:6084668-6084687 | MS.gene24549:intron | 30.0% |
| ! | TCACTCTCTTTTCTTTCATT+TGG | - | chr1.2:6083760-6083779 | MS.gene24549:intron | 30.0% |
| ! | TCTTGATTTGATAACCATGA+CGG | - | chr1.2:6088185-6088204 | MS.gene24549:CDS | 30.0% |
| ! | TTATACAGACAATTTTGCAC+AGG | + | chr1.2:6085490-6085509 | None:intergenic | 30.0% |
| ! | TTCTAAAGATGATCTTCTAG+TGG | - | chr1.2:6083729-6083748 | MS.gene24549:intron | 30.0% |
| ! | TTTTACTTTGTTCGTCATTC+AGG | - | chr1.2:6083469-6083488 | MS.gene24549:intron | 30.0% |
| ! | TTTTCCACATTCTCTGATAA+TGG | - | chr1.2:6087964-6087983 | MS.gene24549:intron | 30.0% |
| ! | TTTTCTGTGAAGCTCTTAAA+TGG | - | chr1.2:6084880-6084899 | MS.gene24549:intron | 30.0% |
| !! | CTAAAACAATGGACTGAAAT+TGG | - | chr1.2:6086521-6086540 | MS.gene24549:intron | 30.0% |
| !! | GAATTGGTTGTTACTTTAGA+GGG | + | chr1.2:6083398-6083417 | None:intergenic | 30.0% |
| !! | TATTAGGTGGATTAGTTATG+TGG | - | chr1.2:6086176-6086195 | MS.gene24549:CDS | 30.0% |
| !!! | CTGTTTTTACCAAAGGAAAT+TGG | + | chr1.2:6084022-6084041 | None:intergenic | 30.0% |
| !!! | CTTAGGATTTTTTCACTGAT+AGG | - | chr1.2:6085627-6085646 | MS.gene24549:intron | 30.0% |
| !!! | TGTTTTAGCAAATCATTTGC+TGG | + | chr1.2:6086509-6086528 | None:intergenic | 30.0% |
| AAACCGACCCTATAGTATAT+AGG | - | chr1.2:6084251-6084270 | MS.gene24549:intron | 35.0% | |
| ACATAGTCCTAGTAATGTAG+TGG | + | chr1.2:6086987-6087006 | None:intergenic | 35.0% | |
| ACATATCCAGAATGTAGACT+CGG | + | chr1.2:6085670-6085689 | None:intergenic | 35.0% | |
| AGAGGATACAATGATCTAGA+TGG | + | chr1.2:6085862-6085881 | None:intergenic | 35.0% | |
| ATTACCCTGAATACACATCA+TGG | + | chr1.2:6087723-6087742 | None:intergenic | 35.0% | |
| ATTACCTTCAACCTTCCTAA+TGG | + | chr1.2:6087392-6087411 | None:intergenic | 35.0% | |
| ATTCTGGATATGTATAACCC+TGG | - | chr1.2:6085677-6085696 | MS.gene24549:intron | 35.0% | |
| ATTGATCTTGATGCACATCA+AGG | - | chr1.2:6085527-6085546 | MS.gene24549:intron | 35.0% | |
| CAAATGCCAAGAAAGAGAAA+TGG | + | chr1.2:6085775-6085794 | None:intergenic | 35.0% | |
| CAAGCAATACTTATGATGTG+TGG | + | chr1.2:6087555-6087574 | None:intergenic | 35.0% | |
| CAATGTTGCCAAGATAATTG+AGG | - | chr1.2:6084779-6084798 | MS.gene24549:intron | 35.0% | |
| CATAGTCCTAGTAATGTAGT+GGG | + | chr1.2:6086986-6087005 | None:intergenic | 35.0% | |
| CATTTCTCTTTCTTGGCATT+TGG | - | chr1.2:6085773-6085792 | MS.gene24549:intron | 35.0% | |
| CATTTGCAAGTTAATTGCAG+AGG | + | chr1.2:6086472-6086491 | None:intergenic | 35.0% | |
| CCCCATTTAGATGAATCAAA+CGG | + | chr1.2:6083640-6083659 | None:intergenic | 35.0% | |
| CCGTTTGATTCATCTAAATG+GGG | - | chr1.2:6083637-6083656 | MS.gene24549:intron | 35.0% | |
| CTAATTAAACGCTATCAGAG+AGG | + | chr1.2:6083884-6083903 | None:intergenic | 35.0% | |
| CTCAATTATCTTGGCAACAT+TGG | + | chr1.2:6084781-6084800 | None:intergenic | 35.0% | |
| CTTACTCTTATACTAATGGC+AGG | - | chr1.2:6085242-6085261 | MS.gene24549:intron | 35.0% | |
| CTTATAGCTCATAAGCTCAT+AGG | + | chr1.2:6084212-6084231 | None:intergenic | 35.0% | |
| GAATTGTGAATAATCGCGTT+TGG | - | chr1.2:6083570-6083589 | MS.gene24549:intron | 35.0% | |
| GATTTACCTGTTTCCTGAAT+GGG | + | chr1.2:6085178-6085197 | None:intergenic | 35.0% | |
| GTAACAGAATGACATTTGCT+GGG | - | chr1.2:6085013-6085032 | MS.gene24549:intron | 35.0% | |
| GTTTCTCCATTTCTCTTTCT+TGG | - | chr1.2:6085766-6085785 | MS.gene24549:intron | 35.0% | |
| TAAATTGAAGATGGCCATTC+CGG | + | chr1.2:6086676-6086695 | None:intergenic | 35.0% | |
| TAACCCTGGAATATATCCTT+TGG | - | chr1.2:6085691-6085710 | MS.gene24549:intron | 35.0% | |
| TAAGAATCGGAGTAGATAAG+CGG | + | chr1.2:6083497-6083516 | None:intergenic | 35.0% | |
| TATATACTATAGGGTCGGTT+TGG | + | chr1.2:6084252-6084271 | None:intergenic | 35.0% | |
| TCAACTGAACAAAAGCAAAG+CGG | + | chr1.2:6085401-6085420 | None:intergenic | 35.0% | |
| TCAAGGAAATGGTCATGAAA+TGG | - | chr1.2:6085544-6085563 | MS.gene24549:intron | 35.0% | |
| TCTATTGGCCATACTATCAT+CGG | + | chr1.2:6085576-6085595 | None:intergenic | 35.0% | |
| TGATTACCCACTACATTACT+AGG | - | chr1.2:6086977-6086996 | MS.gene24549:intron | 35.0% | |
| TGTTTGCCTTCATATCTCTT+AGG | - | chr1.2:6085610-6085629 | MS.gene24549:intron | 35.0% | |
| TTTCATGCCATGATCACAAT+GGG | + | chr1.2:6085922-6085941 | None:intergenic | 35.0% | |
| ! | ACTGCATTTTATTATGAGGC+GGG | - | chr1.2:6085742-6085761 | MS.gene24549:intron | 35.0% |
| ! | ATCTCTAAGAGCAATTCCAT+CGG | + | chr1.2:6087608-6087627 | None:intergenic | 35.0% |
| ! | CCACCATGAAAAGCATAAAT+GGG | + | chr1.2:6084632-6084651 | None:intergenic | 35.0% |
| ! | CTACCCATTTATGCTTTTCA+TGG | - | chr1.2:6084626-6084645 | MS.gene24549:intron | 35.0% |
| ! | CTTGATTTGATAACCATGAC+GGG | - | chr1.2:6088186-6088205 | MS.gene24549:CDS | 35.0% |
| ! | GTAAAGTTCTTTTCCCATTC+AGG | - | chr1.2:6085162-6085181 | MS.gene24549:intron | 35.0% |
| ! | TAACAGAATGACATTTGCTG+GGG | - | chr1.2:6085014-6085033 | MS.gene24549:intron | 35.0% |
| ! | TATTAGTTTAGAACCCGTCA+TGG | + | chr1.2:6088202-6088221 | None:intergenic | 35.0% |
| ! | TCATCTTTAGAAGCTTCAAG+AGG | + | chr1.2:6083721-6083740 | None:intergenic | 35.0% |
| ! | TCCACCATGAAAAGCATAAA+TGG | + | chr1.2:6084633-6084652 | None:intergenic | 35.0% |
| ! | TTTTCATGCCATGATCACAA+TGG | + | chr1.2:6085923-6085942 | None:intergenic | 35.0% |
| !! | AGAAACTTATATGGTGTTGC+TGG | - | chr1.2:6084955-6084974 | MS.gene24549:CDS | 35.0% |
| !! | CGAAAGTACCTCAATTATCT+TGG | + | chr1.2:6084790-6084809 | None:intergenic | 35.0% |
| !! | GGAATTGGTTGTTACTTTAG+AGG | + | chr1.2:6083399-6083418 | None:intergenic | 35.0% |
| !! | GGGATTAGCCTTAAAAACAA+AGG | + | chr1.2:6086333-6086352 | None:intergenic | 35.0% |
| !! | TTTAGGATGTGCATGTTTTC+CGG | - | chr1.2:6086654-6086673 | MS.gene24549:intron | 35.0% |
| !!! | AGCTACTTTTTACCAATCAG+AGG | - | chr1.2:6084462-6084481 | MS.gene24549:intron | 35.0% |
| !!! | CTATCCACTGTTTTTACCAA+AGG | + | chr1.2:6084029-6084048 | None:intergenic | 35.0% |
| !!! | GCTACTTTTTACCAATCAGA+GGG | - | chr1.2:6084463-6084482 | MS.gene24549:intron | 35.0% |
| AAAACCTCCTCCCACATTAA+TGG | + | chr1.2:6085316-6085335 | None:intergenic | 40.0% | |
| AAATTGGCATTGCCAAACAG+AGG | + | chr1.2:6083907-6083926 | None:intergenic | 40.0% | |
| AGAGTTTGGTAGAGAGGATA+CGG | + | chr1.2:6083361-6083380 | None:intergenic | 40.0% | |
| ATAAATATAGGTCCCTCCTG+TGG | - | chr1.2:6085112-6085131 | MS.gene24549:intron | 40.0% | |
| ATACATGAAGTCCAGTGCTA+GGG | - | chr1.2:6088321-6088340 | MS.gene24549:intron | 40.0% | |
| ATCCTAGAAGGTGATCCATT+AGG | - | chr1.2:6087374-6087393 | MS.gene24549:intron | 40.0% | |
| ATGATCACAATGGGATTCAC+AGG | + | chr1.2:6085913-6085932 | None:intergenic | 40.0% | |
| CAACAATCAAAATGAGGGAG+AGG | - | chr1.2:6087115-6087134 | MS.gene24549:intron | 40.0% | |
| CACTGATAGGACCTTTGTAA+TGG | - | chr1.2:6085640-6085659 | MS.gene24549:intron | 40.0% | |
| CATCACTGTTCTGCAGAAAA+TGG | - | chr1.2:6085336-6085355 | MS.gene24549:intron | 40.0% | |
| CATCATTCACATCAAGACAG+AGG | + | chr1.2:6085880-6085899 | None:intergenic | 40.0% | |
| CTCTGTCTTGATGTGAATGA+TGG | - | chr1.2:6085878-6085897 | MS.gene24549:intron | 40.0% | |
| CTCTTATACTAATGGCAGGT+TGG | - | chr1.2:6085246-6085265 | MS.gene24549:intron | 40.0% | |
| CTTGATGCACATCAAGGAAA+TGG | - | chr1.2:6085533-6085552 | MS.gene24549:intron | 40.0% | |
| GAGCCTATATACTATAGGGT+CGG | + | chr1.2:6084257-6084276 | None:intergenic | 40.0% | |
| GGATTTACCTGTTTCCTGAA+TGG | + | chr1.2:6085179-6085198 | None:intergenic | 40.0% | |
| GGTAACAGAATGACATTTGC+TGG | - | chr1.2:6085012-6085031 | MS.gene24549:intron | 40.0% | |
| TAGAAGGTGATCCATTAGGA+AGG | - | chr1.2:6087378-6087397 | MS.gene24549:intron | 40.0% | |
| TAGCTTATAGCTTATGGCTC+TGG | - | chr1.2:6083943-6083962 | MS.gene24549:intron | 40.0% | |
| TAGCTTATTGAGCCTCTGTT+TGG | - | chr1.2:6083991-6084010 | MS.gene24549:intron | 40.0% | |
| TCCTTCTCCTTACCATAGAT+GGG | - | chr1.2:6087697-6087716 | MS.gene24549:intron | 40.0% | |
| TGATCACAATGGGATTCACA+GGG | + | chr1.2:6085912-6085931 | None:intergenic | 40.0% | |
| TGATCCATTAGGAAGGTTGA+AGG | - | chr1.2:6087385-6087404 | MS.gene24549:intron | 40.0% | |
| TGTGAATCCCATTGTGATCA+TGG | - | chr1.2:6085912-6085931 | MS.gene24549:intron | 40.0% | |
| TTACGTTGCACAAGACCATT+GGG | + | chr1.2:6085146-6085165 | None:intergenic | 40.0% | |
| TTCACCTTGAACTTTCAGAG+CGG | - | chr1.2:6086865-6086884 | MS.gene24549:intron | 40.0% | |
| TTTACGTTGCACAAGACCAT+TGG | + | chr1.2:6085147-6085166 | None:intergenic | 40.0% | |
| ! | CCCATTTATGCTTTTCATGG+TGG | - | chr1.2:6084629-6084648 | MS.gene24549:intron | 40.0% |
| ! | GAAATTAGATGAAGCACTCG+AGG | - | chr1.2:6086912-6086931 | MS.gene24549:intron | 40.0% |
| ! | GCGTTTAATTAGCCTCTGTT+TGG | - | chr1.2:6083892-6083911 | MS.gene24549:intron | 40.0% |
| ! | TCTCTAAGAGCAATTCCATC+GGG | + | chr1.2:6087607-6087626 | None:intergenic | 40.0% |
| ! | TCTTTTCCCATTCAGGAAAC+AGG | - | chr1.2:6085169-6085188 | MS.gene24549:intron | 40.0% |
| ! | TTATACTAATGGCAGGTTGG+AGG | - | chr1.2:6085249-6085268 | MS.gene24549:intron | 40.0% |
| ! | TTCCTAATGGATCACCTTCT+AGG | + | chr1.2:6087379-6087398 | None:intergenic | 40.0% |
| !! | ATGGTGTTGCTGGAATTCTT+TGG | - | chr1.2:6084965-6084984 | MS.gene24549:intron | 40.0% |
| !! | CAAAAGCCCCATTTTTATCC+TGG | - | chr1.2:6087750-6087769 | MS.gene24549:intron | 40.0% |
| !! | CTGATAGCGGATGAACTAAT+TGG | + | chr1.2:6084437-6084456 | None:intergenic | 40.0% |
| !! | TTGGTTGTTACTTTAGAGGG+AGG | + | chr1.2:6083395-6083414 | None:intergenic | 40.0% |
| AACTTGCAAATGAAGTGCGC+AGG | - | chr1.2:6086480-6086499 | MS.gene24549:intron | 45.0% | |
| AATGGGTATGTTTGGGAGTC+AGG | + | chr1.2:6087204-6087223 | None:intergenic | 45.0% | |
| ACAATGCCCCAGATGTACTA+TGG | + | chr1.2:6085992-6086011 | None:intergenic | 45.0% | |
| ACAGAAATACGAAGGGGACA+AGG | + | chr1.2:6087159-6087178 | None:intergenic | 45.0% | |
| AGAGGATGGGCCATTAATGT+GGG | - | chr1.2:6085303-6085322 | MS.gene24549:intron | 45.0% | |
| AGGTACGTCGAAGTAGAGTT+TGG | + | chr1.2:6083375-6083394 | None:intergenic | 45.0% | |
| AGTGTGAGCCATAGTACATC+TGG | - | chr1.2:6085981-6086000 | MS.gene24549:intron | 45.0% | |
| ATCATGGCCCATCTATGGTA+AGG | + | chr1.2:6087707-6087726 | None:intergenic | 45.0% | |
| ATGGGCCATGATGTGTATTC+AGG | - | chr1.2:6087715-6087734 | MS.gene24549:intron | 45.0% | |
| CACTGTTCTGCAGAAAATGG+TGG | - | chr1.2:6085339-6085358 | MS.gene24549:intron | 45.0% | |
| CCTATTGTCATGCTCACTTC+AGG | - | chr1.2:6087664-6087683 | MS.gene24549:intron | 45.0% | |
| CCTGAAGTGAGCATGACAAT+AGG | + | chr1.2:6087667-6087686 | None:intergenic | 45.0% | |
| CGAAGTAGAGTTTGGTAGAG+AGG | + | chr1.2:6083367-6083386 | None:intergenic | 45.0% | |
| CTCCTTCTCCTTACCATAGA+TGG | - | chr1.2:6087696-6087715 | MS.gene24549:intron | 45.0% | |
| GAGAGGGCTCATGACATTAT+TGG | + | chr1.2:6083867-6083886 | None:intergenic | 45.0% | |
| GATACATGAAGTCCAGTGCT+AGG | - | chr1.2:6088320-6088339 | MS.gene24549:intron | 45.0% | |
| GGACTTTGCCGATGATAGTA+TGG | - | chr1.2:6085565-6085584 | MS.gene24549:intron | 45.0% | |
| GGAGCAAAGAGCTTTACCAA+AGG | + | chr1.2:6085710-6085729 | None:intergenic | 45.0% | |
| GTGTGAGCCATAGTACATCT+GGG | - | chr1.2:6085982-6086001 | MS.gene24549:intron | 45.0% | |
| TACACATCATGGCCCATCTA+TGG | + | chr1.2:6087712-6087731 | None:intergenic | 45.0% | |
| TAGATGGATGATTGAACCCC+AGG | + | chr1.2:6085846-6085865 | None:intergenic | 45.0% | |
| TATTGAGCCTCTGTTTGGCA+AGG | - | chr1.2:6083996-6084015 | MS.gene24549:intron | 45.0% | |
| TCACCTTGAACTTTCAGAGC+GGG | - | chr1.2:6086866-6086885 | MS.gene24549:intron | 45.0% | |
| TCGGCTTACATGTATGCATG+AGG | - | chr1.2:6084807-6084826 | MS.gene24549:CDS | 45.0% | |
| TGGGCCATGATGTGTATTCA+GGG | - | chr1.2:6087716-6087735 | MS.gene24549:intron | 45.0% | |
| TGTGAGCCATAGTACATCTG+GGG | - | chr1.2:6085983-6086002 | MS.gene24549:intron | 45.0% | |
| TGTTCTGCAGAAAATGGTGG+TGG | - | chr1.2:6085342-6085361 | MS.gene24549:intron | 45.0% | |
| TTCTTAAGGCTCCCTCTGAT+TGG | + | chr1.2:6084477-6084496 | None:intergenic | 45.0% | |
| TTGGCAAGGCCAATTTCCTT+TGG | - | chr1.2:6084010-6084029 | MS.gene24549:intron | 45.0% | |
| ! | CATTGTTTTCTTGTGCGACG+TGG | - | chr1.2:6086006-6086025 | MS.gene24549:intron | 45.0% |
| ! | GATGTGCATGTTTTCCGGAA+TGG | - | chr1.2:6086659-6086678 | MS.gene24549:intron | 45.0% |
| ! | GCAGGTTGGAGGAACTATAT+TGG | - | chr1.2:6085260-6085279 | MS.gene24549:intron | 45.0% |
| ! | GCTAGTCTATTCAACGTTGC+TGG | - | chr1.2:6085795-6085814 | MS.gene24549:intron | 45.0% |
| !! | AAATTGGCCTTGCCAAACAG+AGG | + | chr1.2:6084006-6084025 | None:intergenic | 45.0% |
| !! | AATAAAAAAAAATATGATTT+AGG | + | chr1.2:6086816-6086835 | None:intergenic | 5.0% |
| AACTTGCGAAGGAGAGAGGA+TGG | - | chr1.2:6085289-6085308 | MS.gene24549:intron | 50.0% | |
| ACGAGGTTCCCACCATTGTT+GGG | + | chr1.2:6086111-6086130 | None:intergenic | 50.0% | |
| ACTCTAGACCCCAACAATGG+TGG | - | chr1.2:6086099-6086118 | MS.gene24549:intron | 50.0% | |
| ACTTGCGAAGGAGAGAGGAT+GGG | - | chr1.2:6085290-6085309 | MS.gene24549:intron | 50.0% | |
| ATTGGCTGCGAAACTTGCGA+AGG | - | chr1.2:6085278-6085297 | MS.gene24549:intron | 50.0% | |
| CCATTGGGAAACAATGCCAC+AGG | + | chr1.2:6085131-6085150 | None:intergenic | 50.0% | |
| CCTGTGGCATTGTTTCCCAA+TGG | - | chr1.2:6085128-6085147 | MS.gene24549:intron | 50.0% | |
| CTCTAGACCCCAACAATGGT+GGG | - | chr1.2:6086100-6086119 | MS.gene24549:intron | 50.0% | |
| GACACTCTAGACCCCAACAA+TGG | - | chr1.2:6086096-6086115 | MS.gene24549:intron | 50.0% | |
| GAGAGGATGGGCCATTAATG+TGG | - | chr1.2:6085302-6085321 | MS.gene24549:intron | 50.0% | |
| GCCCATCTATGGTAAGGAGA+AGG | + | chr1.2:6087701-6087720 | None:intergenic | 50.0% | |
| GCTGGAACTGACATCCTAGA+AGG | - | chr1.2:6087362-6087381 | MS.gene24549:intron | 50.0% | |
| TGGGAAACAATGCCACAGGA+GGG | + | chr1.2:6085127-6085146 | None:intergenic | 50.0% | |
| TTGGGAAACAATGCCACAGG+AGG | + | chr1.2:6085128-6085147 | None:intergenic | 50.0% | |
| TTTGGGAGTCAGGAGCTGAA+GGG | + | chr1.2:6087194-6087213 | None:intergenic | 50.0% | |
| ! | GACTCGGTCTGCCATTACAA+AGG | + | chr1.2:6085654-6085673 | None:intergenic | 50.0% |
| ! | TGACATGCTGCTTGTGTCCT+GGG | - | chr1.2:6085826-6085845 | MS.gene24549:intron | 50.0% |
| ! | TGCATGCAGATTAGTCCCGA+TGG | - | chr1.2:6087589-6087608 | MS.gene24549:intron | 50.0% |
| ! | TGTTTTCTTGTGCGACGTGG+TGG | - | chr1.2:6086009-6086028 | MS.gene24549:intron | 50.0% |
| !! | AGTCCCGCTCTGAAAGTTCA+AGG | + | chr1.2:6086872-6086891 | None:intergenic | 50.0% |
| AACACAGCACCTAGAGCACG+AGG | + | chr1.2:6086128-6086147 | None:intergenic | 55.0% | |
| ATCTGCGATGACCCTAGCAC+TGG | + | chr1.2:6088335-6088354 | None:intergenic | 55.0% | |
| CACGAGGTTCCCACCATTGT+TGG | + | chr1.2:6086112-6086131 | None:intergenic | 55.0% | |
| CGAGGTTCCCACCATTGTTG+GGG | + | chr1.2:6086110-6086129 | None:intergenic | 55.0% | |
| GAGTCAGGAGCTGAAGGGAA+AGG | + | chr1.2:6087189-6087208 | None:intergenic | 55.0% | |
| GCGAAACTTGCGAAGGAGAG+AGG | - | chr1.2:6085285-6085304 | MS.gene24549:intron | 55.0% | |
| GGATGGGCCATTAATGTGGG+AGG | - | chr1.2:6085306-6085325 | MS.gene24549:intron | 55.0% | |
| GGCAGACCGAGTCTACATTC+TGG | - | chr1.2:6085661-6085680 | MS.gene24549:intron | 55.0% | |
| GTTTCAAGGTTGCTGGGCGA+AGG | - | chr1.2:6087312-6087331 | MS.gene24549:intron | 55.0% | |
| GTTTGGGAGTCAGGAGCTGA+AGG | + | chr1.2:6087195-6087214 | None:intergenic | 55.0% | |
| TCGGAAGCGGAACAAGAAGG+AGG | + | chr1.2:6083320-6083339 | None:intergenic | 55.0% | |
| TCGTCGGAAGCGGAACAAGA+AGG | + | chr1.2:6083323-6083342 | None:intergenic | 55.0% | |
| TGGGCCATTAATGTGGGAGG+AGG | - | chr1.2:6085309-6085328 | MS.gene24549:intron | 55.0% | |
| ! | CTGACATGCTGCTTGTGTCC+TGG | - | chr1.2:6085825-6085844 | MS.gene24549:intron | 55.0% |
| ! | GACATGCTGCTTGTGTCCTG+GGG | - | chr1.2:6085827-6085846 | MS.gene24549:intron | 55.0% |
| !! | CATGAGAGTGTCGTCGGAAG+CGG | + | chr1.2:6083333-6083352 | None:intergenic | 55.0% |
| !! | GTTGCGCATGAGAGTGTCGT+CGG | + | chr1.2:6083339-6083358 | None:intergenic | 55.0% |
| TGGTGGGAACCTCGTGCTCT+AGG | - | chr1.2:6086116-6086135 | MS.gene24549:intron | 60.0% | |
| ! | GTGCGACGTGGTGGTGAATC+TGG | - | chr1.2:6086018-6086037 | MS.gene24549:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 6083308 | 6088417 | 6083308 | ID=MS.gene24549 |
| chr1.2 | mRNA | 6083308 | 6088417 | 6083308 | ID=MS.gene24549.t1;Parent=MS.gene24549 |
| chr1.2 | exon | 6088322 | 6088417 | 6088322 | ID=MS.gene24549.t1.exon1;Parent=MS.gene24549.t1 |
| chr1.2 | CDS | 6088322 | 6088417 | 6088322 | ID=cds.MS.gene24549.t1;Parent=MS.gene24549.t1 |
| chr1.2 | exon | 6088179 | 6088234 | 6088179 | ID=MS.gene24549.t1.exon2;Parent=MS.gene24549.t1 |
| chr1.2 | CDS | 6088179 | 6088234 | 6088179 | ID=cds.MS.gene24549.t1;Parent=MS.gene24549.t1 |
| chr1.2 | exon | 6087975 | 6088092 | 6087975 | ID=MS.gene24549.t1.exon3;Parent=MS.gene24549.t1 |
| chr1.2 | CDS | 6087975 | 6088092 | 6087975 | ID=cds.MS.gene24549.t1;Parent=MS.gene24549.t1 |
| chr1.2 | exon | 6086925 | 6086987 | 6086925 | ID=MS.gene24549.t1.exon4;Parent=MS.gene24549.t1 |
| chr1.2 | CDS | 6086925 | 6086987 | 6086925 | ID=cds.MS.gene24549.t1;Parent=MS.gene24549.t1 |
| chr1.2 | exon | 6086535 | 6086603 | 6086535 | ID=MS.gene24549.t1.exon5;Parent=MS.gene24549.t1 |
| chr1.2 | CDS | 6086535 | 6086603 | 6086535 | ID=cds.MS.gene24549.t1;Parent=MS.gene24549.t1 |
| chr1.2 | exon | 6086295 | 6086461 | 6086295 | ID=MS.gene24549.t1.exon6;Parent=MS.gene24549.t1 |
| chr1.2 | CDS | 6086295 | 6086461 | 6086295 | ID=cds.MS.gene24549.t1;Parent=MS.gene24549.t1 |
| chr1.2 | exon | 6086144 | 6086208 | 6086144 | ID=MS.gene24549.t1.exon7;Parent=MS.gene24549.t1 |
| chr1.2 | CDS | 6086144 | 6086208 | 6086144 | ID=cds.MS.gene24549.t1;Parent=MS.gene24549.t1 |
| chr1.2 | exon | 6086013 | 6086059 | 6086013 | ID=MS.gene24549.t1.exon8;Parent=MS.gene24549.t1 |
| chr1.2 | CDS | 6086013 | 6086059 | 6086013 | ID=cds.MS.gene24549.t1;Parent=MS.gene24549.t1 |
| chr1.2 | exon | 6084937 | 6084981 | 6084937 | ID=MS.gene24549.t1.exon9;Parent=MS.gene24549.t1 |
| chr1.2 | CDS | 6084937 | 6084981 | 6084937 | ID=cds.MS.gene24549.t1;Parent=MS.gene24549.t1 |
| chr1.2 | exon | 6084792 | 6084842 | 6084792 | ID=MS.gene24549.t1.exon10;Parent=MS.gene24549.t1 |
| chr1.2 | CDS | 6084792 | 6084842 | 6084792 | ID=cds.MS.gene24549.t1;Parent=MS.gene24549.t1 |
| chr1.2 | exon | 6084319 | 6084405 | 6084319 | ID=MS.gene24549.t1.exon11;Parent=MS.gene24549.t1 |
| chr1.2 | CDS | 6084319 | 6084405 | 6084319 | ID=cds.MS.gene24549.t1;Parent=MS.gene24549.t1 |
| chr1.2 | exon | 6084040 | 6084127 | 6084040 | ID=MS.gene24549.t1.exon12;Parent=MS.gene24549.t1 |
| chr1.2 | CDS | 6084040 | 6084127 | 6084040 | ID=cds.MS.gene24549.t1;Parent=MS.gene24549.t1 |
| chr1.2 | exon | 6083308 | 6083408 | 6083308 | ID=MS.gene24549.t1.exon13;Parent=MS.gene24549.t1 |
| chr1.2 | CDS | 6083308 | 6083408 | 6083308 | ID=cds.MS.gene24549.t1;Parent=MS.gene24549.t1 |
| Gene Sequence |
| Protein sequence |
