AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24576

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24576.t1 MTR_1g066710 98.316 297 5 0 1 297 29 325 0.0 613
MS.gene24576.t1 MTR_1g066380 88.215 297 35 0 1 297 29 325 0.0 553
MS.gene24576.t1 MTR_1g066640 88.215 297 35 0 1 297 29 325 0.0 552
MS.gene24576.t1 MTR_1g066680 80.471 297 57 1 1 297 29 324 1.36e-180 501
MS.gene24576.t1 MTR_1g066380 87.451 255 32 0 43 297 3 257 8.79e-169 468
MS.gene24576.t1 MTR_4g132110 61.356 295 114 0 1 295 34 328 6.96e-138 393
MS.gene24576.t1 MTR_4g132110 60.333 300 114 1 1 295 34 333 1.43e-135 387
MS.gene24576.t1 MTR_5g021060 43.000 300 161 4 3 295 34 330 6.07e-78 240
MS.gene24576.t1 MTR_8g076820 40.000 300 170 4 3 295 34 330 6.67e-72 225
MS.gene24576.t1 MTR_4g132490 36.577 298 183 4 2 295 32 327 1.56e-69 219
MS.gene24576.t1 MTR_7g086820 38.255 298 174 4 1 295 22 312 1.62e-68 216
MS.gene24576.t1 MTR_5g014100 38.361 305 173 4 3 295 30 331 3.60e-66 210
MS.gene24576.t1 MTR_7g086870 37.838 296 177 3 1 296 24 312 4.07e-65 207
MS.gene24576.t1 MTR_7g029030 40.203 296 172 4 2 295 28 320 1.70e-64 206
MS.gene24576.t1 MTR_3g466200 37.584 298 177 5 2 295 28 320 2.98e-64 205
MS.gene24576.t1 MTR_2g084000 36.486 296 181 4 2 295 29 319 3.51e-64 204
MS.gene24576.t1 MTR_5g083860 36.271 295 184 3 2 295 34 325 5.19e-63 202
MS.gene24576.t1 MTR_6g027440 35.235 298 184 3 1 295 23 314 8.10e-63 201
MS.gene24576.t1 MTR_4g087965 35.880 301 181 5 1 291 44 342 3.57e-62 200
MS.gene24576.t1 MTR_2g437770 38.742 302 168 6 1 296 52 342 6.69e-62 199
MS.gene24576.t1 MTR_3g092990 36.424 302 184 3 1 296 28 327 1.04e-61 199
MS.gene24576.t1 MTR_2g084110 34.915 295 186 3 2 295 28 317 1.32e-61 198
MS.gene24576.t1 MTR_6g043240 36.486 296 177 5 3 296 46 332 2.11e-61 198
MS.gene24576.t1 MTR_2g029830 36.964 303 180 4 3 297 32 331 3.02e-61 198
MS.gene24576.t1 MTR_2g084080 34.915 295 186 3 2 295 28 317 3.05e-61 197
MS.gene24576.t1 MTR_3g094650 34.884 301 180 5 2 295 31 322 7.23e-61 196
MS.gene24576.t1 MTR_1g054205 35.314 303 184 4 3 296 28 327 7.83e-61 196
MS.gene24576.t1 MTR_2g084010 35.000 300 180 5 2 295 28 318 9.32e-61 196
MS.gene24576.t1 MTR_7g093370 36.964 303 179 6 3 296 73 372 3.18e-60 196
MS.gene24576.t1 MTR_2g084020 35.000 300 180 5 2 295 28 318 4.94e-60 194
MS.gene24576.t1 MTR_2g029820 38.487 304 174 5 2 296 32 331 6.52e-60 195
MS.gene24576.t1 MTR_2g029815 37.829 304 176 5 2 296 32 331 6.70e-60 194
MS.gene24576.t1 MTR_7g072510 32.542 295 193 3 2 295 23 312 4.05e-59 191
MS.gene24576.t1 MTR_4g133800 37.542 301 172 6 1 295 43 333 4.46e-59 192
MS.gene24576.t1 MTR_2g078610 34.259 324 179 5 2 291 79 402 1.45e-58 193
MS.gene24576.t1 MTR_1g090760 34.653 303 188 4 1 295 30 330 1.83e-58 190
MS.gene24576.t1 MTR_3g072190 35.254 295 185 3 2 295 29 318 2.16e-58 190
MS.gene24576.t1 MTR_2g028980 37.542 301 177 4 3 295 33 330 5.89e-58 190
MS.gene24576.t1 MTR_0286s0010 35.216 301 187 4 1 295 36 334 6.29e-58 189
MS.gene24576.t1 MTR_6g008075 35.216 301 187 4 1 295 36 334 6.29e-58 189
MS.gene24576.t1 MTR_2g029800 37.954 303 177 5 2 296 32 331 9.16e-58 189
MS.gene24576.t1 MTR_8g062780 37.874 301 178 3 2 295 26 324 1.05e-57 188
MS.gene24576.t1 MTR_2g067440 33.231 325 184 5 2 294 63 386 1.21e-57 190
MS.gene24576.t1 MTR_5g022870 37.333 300 175 6 1 295 25 316 1.34e-57 187
MS.gene24576.t1 MTR_2g077990 33.951 324 180 6 2 291 79 402 2.09e-57 190
MS.gene24576.t1 MTR_4g046713 35.117 299 185 3 3 295 31 326 2.38e-57 187
MS.gene24576.t1 MTR_1g101830 34.783 299 184 4 2 295 30 322 4.73e-57 186
MS.gene24576.t1 MTR_4g029200 34.354 294 187 3 3 295 50 338 6.67e-57 186
MS.gene24576.t1 MTR_4g125940 34.754 305 184 6 2 296 31 330 6.68e-57 186
MS.gene24576.t1 MTR_1g115900 34.114 299 187 6 2 296 30 322 7.04e-57 186
MS.gene24576.t1 MTR_2g084090 33.108 296 191 4 2 295 28 318 9.59e-57 186
MS.gene24576.t1 MTR_8g075100 36.120 299 178 5 2 295 29 319 1.86e-56 185
MS.gene24576.t1 MTR_2g029750 35.099 302 185 4 2 295 32 330 2.63e-56 185
MS.gene24576.t1 MTR_5g074970 35.811 296 186 3 2 295 33 326 9.66e-56 183
MS.gene24576.t1 MTR_1g086320 34.868 304 183 5 3 295 34 333 1.24e-55 183
MS.gene24576.t1 MTR_6g043280 34.007 297 187 5 1 295 43 332 1.67e-55 183
MS.gene24576.t1 MTR_3g094670 34.915 295 186 4 3 295 32 322 1.71e-55 182
MS.gene24576.t1 MTR_1g038680 33.882 304 190 5 1 295 31 332 3.49e-55 182
MS.gene24576.t1 MTR_2g040000 35.526 304 182 7 3 296 33 332 3.65e-55 182
MS.gene24576.t1 MTR_2g088770 35.762 302 183 5 1 295 28 325 6.38e-55 181
MS.gene24576.t1 MTR_2g029740 34.884 301 185 4 3 295 33 330 1.13e-54 181
MS.gene24576.t1 MTR_4g031140 33.555 301 186 6 3 296 32 325 1.22e-54 181
MS.gene24576.t1 MTR_2g008710 33.553 304 186 6 1 295 29 325 2.56e-54 179
MS.gene24576.t1 MTR_0155s0040 33.108 296 188 4 1 295 29 315 2.73e-54 179
MS.gene24576.t1 MTR_4g030890 33.779 299 186 5 3 295 104 396 3.45e-54 181
MS.gene24576.t1 MTR_7g107520 35.452 299 182 4 2 295 28 320 3.51e-54 179
MS.gene24576.t1 MTR_5g033470 33.887 301 191 5 3 295 77 377 5.10e-54 180
MS.gene24576.t1 MTR_3g094630 35.135 296 186 4 2 295 31 322 8.46e-54 178
MS.gene24576.t1 MTR_6g043460 33.106 293 186 5 2 291 39 324 1.26e-53 178
MS.gene24576.t1 MTR_4g083710 33.110 299 189 4 3 295 31 324 1.83e-53 177
MS.gene24576.t1 MTR_1g022970 37.874 301 176 4 3 295 50 347 3.28e-53 177
MS.gene24576.t1 MTR_2g029850 34.983 303 186 5 3 297 33 332 3.52e-53 177
MS.gene24576.t1 MTR_2g078280 33.439 314 175 5 2 281 79 392 3.85e-53 178
MS.gene24576.t1 MTR_7g072480 33.220 295 191 3 2 295 27 316 1.01e-52 175
MS.gene24576.t1 MTR_3g092990 34.437 302 179 4 1 296 28 316 1.51e-52 174
MS.gene24576.t1 MTR_4g029170 36.364 297 181 5 2 295 30 321 2.33e-52 174
MS.gene24576.t1 MTR_4g029190 34.459 296 186 4 3 295 50 340 2.54e-52 175
MS.gene24576.t1 MTR_2g029560 32.673 303 193 4 3 297 28 327 4.73e-52 174
MS.gene24576.t1 MTR_5g074760 35.762 302 182 7 2 297 28 323 7.39e-52 173
MS.gene24576.t1 MTR_2g029830 37.786 262 152 4 44 297 5 263 7.73e-52 172
MS.gene24576.t1 MTR_1g086490 33.762 311 184 5 3 295 34 340 1.01e-51 173
MS.gene24576.t1 MTR_4g127670 34.459 296 183 5 3 291 28 319 1.07e-51 172
MS.gene24576.t1 MTR_2g029730 33.882 304 188 5 3 297 29 328 1.12e-51 173
MS.gene24576.t1 MTR_4g125940 36.101 277 162 6 30 296 4 275 2.57e-51 170
MS.gene24576.t1 MTR_4g122640 32.776 299 193 4 2 295 41 336 2.91e-51 172
MS.gene24576.t1 MTR_3g467600 32.667 300 191 6 2 295 30 324 1.45e-50 170
MS.gene24576.t1 MTR_1g009750 35.065 308 179 6 1 295 29 328 2.21e-50 169
MS.gene24576.t1 MTR_5g074860 34.000 300 184 7 2 294 32 324 3.35e-50 169
MS.gene24576.t1 MTR_4g029180 35.690 297 183 5 2 295 30 321 4.44e-50 168
MS.gene24576.t1 MTR_1g077000 31.864 295 193 3 1 295 41 327 6.41e-50 168
MS.gene24576.t1 MTR_2g099175 31.788 302 195 4 1 295 38 335 7.38e-50 168
MS.gene24576.t1 MTR_4g074995 33.779 299 174 6 3 295 28 308 8.22e-50 167
MS.gene24576.t1 MTR_5g074710 34.551 301 183 7 2 295 28 321 1.44e-49 167
MS.gene24576.t1 MTR_1g025980 32.776 299 189 4 1 294 26 317 1.50e-49 167
MS.gene24576.t1 MTR_7g026990 30.847 295 197 3 3 296 35 323 1.80e-49 167
MS.gene24576.t1 MTR_2g029860 33.333 303 191 4 3 297 33 332 1.87e-49 167
MS.gene24576.t1 MTR_4g114210 32.143 308 184 6 2 295 24 320 2.34e-49 166
MS.gene24576.t1 MTR_5g016010 35.099 302 184 5 2 294 30 328 2.44e-49 167
MS.gene24576.t1 MTR_4g095450 34.354 294 186 4 2 291 30 320 2.90e-49 166
MS.gene24576.t1 MTR_3g072190 36.471 255 156 4 42 295 2 251 3.85e-49 164
MS.gene24576.t1 MTR_5g074740 34.667 300 184 7 2 295 28 321 6.82e-49 165
MS.gene24576.t1 MTR_5g049280 31.922 307 195 7 1 296 35 338 1.94e-48 164
MS.gene24576.t1 MTR_5g017850 32.333 300 194 5 2 295 30 326 6.48e-48 163
MS.gene24576.t1 MTR_3g105790 32.450 302 191 4 1 295 27 322 1.68e-47 162
MS.gene24576.t1 MTR_2g029910 33.333 306 186 6 2 295 33 332 4.05e-47 161
MS.gene24576.t1 MTR_5g017860 31.561 301 195 5 2 295 30 326 2.27e-46 159
MS.gene24576.t1 MTR_2g067450 32.673 303 187 6 2 294 14 309 4.28e-46 158
MS.gene24576.t1 MTR_3g466180 34.448 299 182 4 2 295 34 323 4.99e-46 158
MS.gene24576.t1 MTR_4g074990 30.952 294 186 4 3 295 28 305 1.06e-45 156
MS.gene24576.t1 MTR_2g008160 30.744 309 189 6 1 295 26 323 1.28e-41 146
MS.gene24576.t1 MTR_2g008730 29.934 304 173 7 1 295 29 301 4.16e-41 144
MS.gene24576.t1 MTR_4g074980 31.858 226 152 2 3 227 29 253 1.04e-39 139
MS.gene24576.t1 MTR_1g009750 31.290 310 171 7 1 295 29 311 3.00e-39 140
MS.gene24576.t1 MTR_4g074980 29.153 295 180 7 2 295 28 294 4.01e-39 139
MS.gene24576.t1 MTR_0147s0010 27.937 315 192 5 2 294 80 381 3.28e-37 136
MS.gene24576.t1 MTR_3g105790 32.099 243 155 3 60 295 7 246 1.41e-34 126
MS.gene24576.t1 MTR_5g074860 29.000 300 160 7 2 294 32 285 6.33e-32 120
MS.gene24576.t1 MTR_2g008160 29.412 306 162 8 1 295 26 288 3.94e-31 118
MS.gene24576.t1 MTR_2g008160 36.257 171 106 2 1 171 26 193 5.89e-30 112
MS.gene24576.t1 MTR_5g074700 32.751 229 131 7 71 295 5 214 3.59e-28 108
MS.gene24576.t1 MTR_2g078560 26.036 338 182 10 1 294 6 319 2.80e-25 103
MS.gene24576.t1 MTR_3g072210 33.684 190 119 4 108 295 54 238 3.70e-24 98.2
MS.gene24576.t1 MTR_7g086790 34.946 186 102 4 46 231 17 183 7.14e-24 96.7
MS.gene24576.t1 MTR_2g029880 31.000 200 118 4 104 296 3 189 1.74e-23 95.9
MS.gene24576.t1 MTR_3g072260 40.952 105 61 1 2 105 29 133 3.92e-22 90.5
MS.gene24576.t1 MTR_7g072490 25.991 227 108 4 46 271 3 170 3.41e-19 84.3
MS.gene24576.t1 MTR_5g058120 34.014 147 88 3 145 291 18 155 8.79e-18 81.3
MS.gene24576.t1 MTR_6g048160 43.662 71 37 1 38 108 22 89 9.87e-15 68.9
MS.gene24576.t1 MTR_1g089005 34.783 115 69 1 2 110 18 132 4.22e-14 68.9
MS.gene24576.t1 MTR_1g098320 39.241 79 48 0 217 295 46 124 3.96e-13 65.9
MS.gene24576.t1 MTR_3g462850 30.769 143 88 4 163 296 10 150 7.99e-12 62.4
MS.gene24576.t1 MTR_7g086785 28.244 131 94 0 42 172 1 131 1.02e-11 62.0
MS.gene24576.t1 MTR_7g086810 32.479 117 54 1 1 117 8 99 9.59e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24576.t1 AT2G37130 76.351 296 69 1 1 295 1 296 4.75e-174 483
MS.gene24576.t1 AT2G37130 76.351 296 69 1 1 295 32 327 1.88e-173 483
MS.gene24576.t1 AT4G21960 57.576 297 126 0 1 297 33 329 3.39e-134 383
MS.gene24576.t1 AT4G36430 39.203 301 173 4 3 296 34 331 6.43e-71 222
MS.gene24576.t1 AT5G66390 39.735 302 170 5 2 295 36 333 7.76e-71 222
MS.gene24576.t1 AT2G18150 39.667 300 171 4 3 295 40 336 3.86e-70 221
MS.gene24576.t1 AT1G34510 38.983 295 169 5 2 295 25 309 8.97e-70 219
MS.gene24576.t1 AT3G50990 40.667 300 168 4 3 295 45 341 7.04e-69 218
MS.gene24576.t1 AT2G18140 38.206 301 176 4 2 295 38 335 3.68e-67 213
MS.gene24576.t1 AT5G17820 37.667 300 170 5 1 295 26 313 6.57e-66 209
MS.gene24576.t1 AT3G03670 37.624 303 175 3 1 295 25 321 2.33e-65 208
MS.gene24576.t1 AT4G08780 35.738 305 183 5 2 296 27 328 7.12e-65 207
MS.gene24576.t1 AT5G17820 38.000 300 169 5 1 295 79 366 1.26e-64 207
MS.gene24576.t1 AT5G40150 37.209 301 177 3 1 295 34 328 2.60e-64 205
MS.gene24576.t1 AT3G17070 35.762 302 183 6 2 295 41 339 2.41e-63 203
MS.gene24576.t1 AT4G08770 35.410 305 184 5 2 296 27 328 4.12e-63 203
MS.gene24576.t1 AT4G26010 36.610 295 176 5 2 295 25 309 6.78e-63 201
MS.gene24576.t1 AT4G26010 36.610 295 176 5 2 295 53 337 1.68e-62 201
MS.gene24576.t1 AT5G05340 35.811 296 184 4 2 295 33 324 6.44e-62 199
MS.gene24576.t1 AT4G17690 36.824 296 183 2 2 295 29 322 1.74e-61 198
MS.gene24576.t1 AT5G14130 36.333 300 181 3 2 295 35 330 1.88e-61 198
MS.gene24576.t1 AT5G14130 36.333 300 181 3 2 295 76 371 5.68e-61 198
MS.gene24576.t1 AT5G15180 36.545 301 180 5 1 295 34 329 6.95e-61 196
MS.gene24576.t1 AT1G71695 35.714 294 180 4 2 291 47 335 7.27e-61 197
MS.gene24576.t1 AT1G30870 37.171 304 173 6 1 296 53 346 6.83e-60 194
MS.gene24576.t1 AT2G39040 37.500 304 180 6 1 295 48 350 5.63e-59 192
MS.gene24576.t1 AT2G22420 35.117 299 182 5 3 295 27 319 7.97e-59 191
MS.gene24576.t1 AT2G35380 34.740 308 180 5 3 295 34 335 9.04e-59 191
MS.gene24576.t1 AT5G06730 33.113 302 191 4 3 296 37 335 1.09e-58 192
MS.gene24576.t1 AT3G32980 34.098 305 188 5 3 297 35 336 1.39e-58 191
MS.gene24576.t1 AT5G64120 33.333 303 183 5 1 295 37 328 1.89e-58 190
MS.gene24576.t1 AT1G24110 37.000 300 181 3 2 295 25 322 4.19e-58 189
MS.gene24576.t1 AT1G05260 34.323 303 188 5 1 296 28 326 4.62e-58 189
MS.gene24576.t1 AT4G31760 34.437 302 185 3 1 295 31 326 1.35e-57 188
MS.gene24576.t1 AT5G06720 33.444 302 190 4 3 296 36 334 1.45e-57 188
MS.gene24576.t1 AT3G28200 35.000 300 182 4 2 295 24 316 2.65e-57 187
MS.gene24576.t1 AT4G16270 36.093 302 181 6 1 295 52 348 4.43e-57 187
MS.gene24576.t1 AT2G34060 35.548 301 182 5 2 292 45 343 8.63e-57 186
MS.gene24576.t1 AT1G14550 36.149 296 182 5 3 295 30 321 1.24e-56 185
MS.gene24576.t1 AT3G49120 33.443 305 190 5 3 297 36 337 1.41e-56 186
MS.gene24576.t1 AT4G33870 31.193 327 188 5 2 291 71 397 5.88e-56 186
MS.gene24576.t1 AT3G49110 33.115 305 191 5 3 297 37 338 7.95e-56 184
MS.gene24576.t1 AT3G01190 35.762 302 179 7 1 295 28 321 1.74e-55 182
MS.gene24576.t1 AT2G38390 33.003 303 191 5 2 295 34 333 3.30e-55 182
MS.gene24576.t1 AT5G47000 35.017 297 188 3 2 295 36 330 3.82e-55 182
MS.gene24576.t1 AT2G24800 33.775 302 188 4 1 295 33 329 4.97e-55 181
MS.gene24576.t1 AT1G44970 37.542 301 177 4 3 295 49 346 1.09e-54 181
MS.gene24576.t1 AT5G42180 34.783 299 181 5 2 294 26 316 4.16e-54 179
MS.gene24576.t1 AT5G24070 33.770 305 188 5 2 297 38 337 4.56e-54 179
MS.gene24576.t1 AT1G49570 31.987 297 196 2 3 293 52 348 7.78e-54 179
MS.gene24576.t1 AT2G18980 33.555 301 188 4 2 295 28 323 9.49e-54 178
MS.gene24576.t1 AT2G38380 33.003 303 191 5 2 295 34 333 1.18e-53 178
MS.gene24576.t1 AT1G68850 33.007 306 194 6 1 296 32 336 2.94e-53 177
MS.gene24576.t1 AT5G51890 34.000 300 186 5 2 295 29 322 7.00e-53 176
MS.gene24576.t1 AT5G58390 34.122 296 190 4 2 295 24 316 8.07e-53 175
MS.gene24576.t1 AT4G30170 33.667 300 187 5 3 295 31 325 1.28e-52 175
MS.gene24576.t1 AT1G14540 33.559 295 190 4 3 295 25 315 1.40e-52 175
MS.gene24576.t1 AT4G11290 33.333 306 187 6 1 295 27 326 2.61e-52 174
MS.gene24576.t1 AT4G37520 33.663 303 189 5 2 295 30 329 3.10e-52 174
MS.gene24576.t1 AT2G41480 34.211 304 183 7 2 295 32 328 3.12e-52 174
MS.gene24576.t1 AT4G33420 34.459 296 184 4 1 295 39 325 3.73e-52 174
MS.gene24576.t1 AT3G21770 35.235 298 182 7 1 291 31 324 5.41e-52 174
MS.gene24576.t1 AT1G05240 33.553 304 187 5 1 295 28 325 5.49e-52 173
MS.gene24576.t1 AT1G05250 33.553 304 187 5 1 295 28 325 5.49e-52 173
MS.gene24576.t1 AT5G39580 33.333 300 188 6 1 295 27 319 7.68e-52 173
MS.gene24576.t1 AT4G33420 34.459 296 184 4 1 295 86 372 1.56e-51 174
MS.gene24576.t1 AT5G58400 32.215 298 193 5 2 295 33 325 2.17e-50 169
MS.gene24576.t1 AT4G37520 33.663 303 186 6 2 295 30 326 2.37e-50 169
MS.gene24576.t1 AT4G37530 33.333 303 190 5 2 295 30 329 3.31e-50 169
MS.gene24576.t1 AT4G25980 33.115 305 188 7 1 295 28 326 6.21e-50 168
MS.gene24576.t1 AT3G17070 36.047 258 154 6 46 295 22 276 1.28e-49 166
MS.gene24576.t1 AT5G19890 33.113 302 187 6 2 295 33 327 3.10e-49 166
MS.gene24576.t1 AT2G43480 32.013 303 192 5 2 295 38 335 7.54e-48 163
MS.gene24576.t1 AT3G49960 32.781 302 191 5 3 295 31 329 1.12e-47 162
MS.gene24576.t1 AT5G22410 32.441 299 189 5 1 292 30 322 1.38e-47 162
MS.gene24576.t1 AT5G19880 31.475 305 195 5 2 295 28 329 1.75e-47 162
MS.gene24576.t1 AT5G67400 33.663 303 189 5 2 295 30 329 7.37e-47 160
MS.gene24576.t1 AT1G77100 32.226 301 191 9 1 295 26 319 4.68e-44 152
MS.gene24576.t1 AT5G64110 31.894 301 189 6 3 295 38 330 8.64e-44 152
MS.gene24576.t1 AT4G37530 33.594 256 158 5 2 248 30 282 9.04e-42 145
MS.gene24576.t1 AT2G35380 32.129 249 149 4 61 295 5 247 2.96e-41 143
MS.gene24576.t1 AT5G64100 28.947 304 196 6 1 295 39 331 1.72e-38 138
MS.gene24576.t1 AT4G25980 37.576 165 100 2 1 165 73 234 1.22e-32 122
MS.gene24576.t1 AT5G39580 33.526 173 111 2 1 173 27 195 4.45e-28 108
MS.gene24576.t1 AT2G24800 34.356 163 104 1 1 163 33 192 2.54e-27 107
MS.gene24576.t1 AT3G42570 35.714 98 58 2 69 163 52 147 1.27e-13 67.4

Find 67 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGTCTTCATTTCAAATTT+TGG 0.167361 1.3:-46829217 None:intergenic
TTGATGATCTCTTCTGCTTT+TGG 0.188067 1.3:-46828699 None:intergenic
CAACTACTACAAGAACATTT+TGG 0.233199 1.3:+46829664 MS.gene24576:CDS
TTCACATAAGGTGATGTTCT+TGG 0.257639 1.3:-46829731 None:intergenic
AAGGGTACATTGCATGAATT+TGG 0.274410 1.3:+46829496 MS.gene24576:CDS
CAAATAATCATATAACTAAT+TGG 0.281961 1.3:-46829879 None:intergenic
TTTCTCAACAGCAGCTTTGA+TGG 0.284452 1.3:-46828993 None:intergenic
GCATATGTGGGGTCTAGCTT+TGG 0.306524 1.3:-46829545 None:intergenic
CTAAGGATATAGAGTCATTA+TGG 0.325868 1.3:-46829294 None:intergenic
CAGACATCAGAGAGAAGTTC+CGG 0.336911 1.3:+46828944 MS.gene24576:CDS
ACAGCATTTGGATCTGGATT+TGG 0.338871 1.3:-46829596 None:intergenic
CTTGCATATAGAACAGCATT+TGG 0.340382 1.3:-46829608 None:intergenic
TTGGATCTGGATTTGGTGTT+GGG 0.357857 1.3:-46829589 None:intergenic
TCAGAGAATAATCCTCTTAC+CGG 0.371092 1.3:+46829815 MS.gene24576:CDS
TCTAGCTTTGGGTCCACTGT+GGG 0.394817 1.3:-46829533 None:intergenic
CATATGTGGGGTCTAGCTTT+GGG 0.402844 1.3:-46829544 None:intergenic
GAAGCCACTGTTGCTCTGTT+AGG 0.406342 1.3:+46829352 MS.gene24576:CDS
TCACCTTGATCTCCGGTAAG+AGG 0.408149 1.3:-46829827 None:intergenic
GATATAGAGTCATTATGGTT+TGG 0.411553 1.3:-46829289 None:intergenic
CCACTGTGGGGTATAGCCTC+TGG 0.422051 1.3:-46829520 None:intergenic
TCTAATTTCACCTTGATCTC+CGG 0.439413 1.3:-46829834 None:intergenic
TATAGAACAGCATTTGGATC+TGG 0.452583 1.3:-46829602 None:intergenic
TTTGGATCTGGATTTGGTGT+TGG 0.455653 1.3:-46829590 None:intergenic
ATGGAAACACGGCGGTTTCG+TGG 0.470766 1.3:+46828751 MS.gene24576:CDS
AGACATCAGAGAGAAGTTCC+GGG 0.476089 1.3:+46828945 MS.gene24576:CDS
TAGTTGTTGTCGATTATCAT+TGG 0.485138 1.3:-46829647 None:intergenic
AATCCTCTTACCGGAGATCA+AGG 0.499067 1.3:+46829824 MS.gene24576:CDS
GTCGGTAGGCGATGTAGTAT+CGG 0.505099 1.3:+46828919 MS.gene24576:CDS
GTCTAGCTTTGGGTCCACTG+TGG 0.510662 1.3:-46829534 None:intergenic
TCACCTTGACTATGCAATCA+TGG 0.511245 1.3:-46828788 None:intergenic
TTTAGATAGGCAGCATATGT+GGG 0.512711 1.3:-46829557 None:intergenic
CGCCTACCGACTCTAAAAGC+AGG 0.513021 1.3:-46828907 None:intergenic
CCAAAATTTGAAATGAAGAC+AGG 0.514773 1.3:+46829217 MS.gene24576:CDS
ATTCTTCTACCATTGTTACA+TGG 0.531531 1.3:-46829261 None:intergenic
CGCTAGAGATGGAATTGCCA+TGG 0.534187 1.3:+46829060 MS.gene24576:CDS
GTTGCTCTTTCCGCTAGAGA+TGG 0.543064 1.3:+46829049 MS.gene24576:CDS
AGATCAAGGTGAAATTAGAA+AGG 0.559276 1.3:+46829838 MS.gene24576:CDS
CAGGAGGACACTCAGTGGGA+AGG 0.566579 1.3:+46829477 MS.gene24576:intron
ACTTCAATGAACAATTCTCA+AGG 0.567274 1.3:+46829777 MS.gene24576:CDS
ATACTTGAAGTTTCGCATCC+CGG 0.570050 1.3:-46828963 None:intergenic
CTAGCTTTGGGTCCACTGTG+GGG 0.577225 1.3:-46829532 None:intergenic
AGGAGGACACTCAGTGGGAA+GGG 0.577554 1.3:+46829478 MS.gene24576:intron
TGGAAACACGGCGGTTTCGT+GGG 0.579986 1.3:+46828752 MS.gene24576:CDS
ATTGAACTGTATAACGAGCA+TGG 0.584782 1.3:+46828732 MS.gene24576:CDS
CAAAGAAAGCCATGTAACAA+TGG 0.587531 1.3:+46829252 MS.gene24576:CDS
TTGAAATGAAGACAGGACGA+AGG 0.588626 1.3:+46829224 MS.gene24576:CDS
ATGAAGACAGGACGAAGGGA+TGG 0.591567 1.3:+46829229 MS.gene24576:CDS
TGAAATGAAGACAGGACGAA+GGG 0.593661 1.3:+46829225 MS.gene24576:CDS
TTGAAAACGAGAAAGCACTA+AGG 0.594148 1.3:-46829311 None:intergenic
CTTCCATGATTGCATAGTCA+AGG 0.595237 1.3:+46828785 MS.gene24576:CDS
GTCGGCACATGATACTGTCA+AGG 0.601258 1.3:-46829023 None:intergenic
GTATAACGAGCATGGAAACA+CGG 0.609604 1.3:+46828740 MS.gene24576:CDS
GGTGCATTTGTATAGTTGGG+AGG 0.613238 1.3:+46829193 MS.gene24576:intron
GCCTACCGACTCTAAAAGCA+GGG 0.614896 1.3:-46828906 None:intergenic
CTTCAATGAACAATTCTCAA+GGG 0.615864 1.3:+46829778 MS.gene24576:CDS
GTTCTTCATCCACAGTGAGT+AGG 0.617420 1.3:-46829697 None:intergenic
CAATCAGGAGGACACTCAGT+GGG 0.618173 1.3:+46829473 MS.gene24576:intron
ATTGCATGAATTTGGTCCAG+AGG 0.619021 1.3:+46829504 MS.gene24576:CDS
AGCGGAAAGAGCAACAATGT+CGG 0.649811 1.3:-46829041 None:intergenic
CATGGCAATTCCATCTCTAG+CGG 0.653048 1.3:-46829059 None:intergenic
TTAGATAGGCAGCATATGTG+GGG 0.658332 1.3:-46829556 None:intergenic
AGTACCTAACAGAGCAACAG+TGG 0.665213 1.3:-46829356 None:intergenic
TCAATCAGGAGGACACTCAG+TGG 0.675558 1.3:+46829472 MS.gene24576:intron
TCGGCACATGATACTGTCAA+GGG 0.683470 1.3:-46829022 None:intergenic
ACACAAGGGCCTACTCACTG+TGG 0.693288 1.3:+46829688 MS.gene24576:CDS
CCAGAGGCTATACCCCACAG+TGG 0.772742 1.3:+46829520 MS.gene24576:CDS
TAACGAGCATGGAAACACGG+CGG 0.832552 1.3:+46828743 MS.gene24576:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAACATAAACATAATTAAT+CGG + chr1.3:46829439-46829458 MS.gene24576:intron 15.0%
!! TATAGAACATTGTAAATATT+GGG + chr1.3:46829154-46829173 MS.gene24576:intron 15.0%
!! TTATAGAACATTGTAAATAT+TGG + chr1.3:46829153-46829172 MS.gene24576:intron 15.0%
!!! AATTGATAATGATATATATG+TGG + chr1.3:46828858-46828877 MS.gene24576:intron 15.0%
!!! ATTCTAACATTTACTTTTTT+TGG + chr1.3:46829386-46829405 MS.gene24576:intron 15.0%
!!! ATTGATAATGATATATATGT+GGG + chr1.3:46828859-46828878 MS.gene24576:intron 15.0%
ACTTCAATGAACAATTCTCA+AGG + chr1.3:46829777-46829796 MS.gene24576:CDS 30.0%
AGATCAAGGTGAAATTAGAA+AGG + chr1.3:46829838-46829857 MS.gene24576:CDS 30.0%
ATCACCTTATGTGAAAAAGA+TGG + chr1.3:46829739-46829758 MS.gene24576:CDS 30.0%
ATTCTTCTACCATTGTTACA+TGG - chr1.3:46829264-46829283 None:intergenic 30.0%
CTAAGGATATAGAGTCATTA+TGG - chr1.3:46829297-46829316 None:intergenic 30.0%
CTTCAATGAACAATTCTCAA+GGG + chr1.3:46829778-46829797 MS.gene24576:CDS 30.0%
GATATAGAGTCATTATGGTT+TGG - chr1.3:46829292-46829311 None:intergenic 30.0%
! CAACTACTACAAGAACATTT+TGG + chr1.3:46829664-46829683 MS.gene24576:CDS 30.0%
! CCAAAATTTGAAATGAAGAC+AGG + chr1.3:46829217-46829236 MS.gene24576:CDS 30.0%
! CCTGTCTTCATTTCAAATTT+TGG - chr1.3:46829220-46829239 None:intergenic 30.0%
! TAGTTGTTGTCGATTATCAT+TGG - chr1.3:46829650-46829669 None:intergenic 30.0%
! TTGGGTGTGAATTTTTATGT+TGG + chr1.3:46829172-46829191 MS.gene24576:intron 30.0%
!!! AAGAACATTTTGGAACACAA+GGG + chr1.3:46829674-46829693 MS.gene24576:CDS 30.0%
AAAAAGATGGCAGCTGATAA+TGG + chr1.3:46829752-46829771 MS.gene24576:CDS 35.0%
ATTGAACTGTATAACGAGCA+TGG + chr1.3:46828732-46828751 MS.gene24576:CDS 35.0%
CAAAGAAAGCCATGTAACAA+TGG + chr1.3:46829252-46829271 MS.gene24576:CDS 35.0%
CTTGCATATAGAACAGCATT+TGG - chr1.3:46829611-46829630 None:intergenic 35.0%
GTTGGTGCATTTGTATAGTT+GGG + chr1.3:46829190-46829209 MS.gene24576:intron 35.0%
TATAGAACAGCATTTGGATC+TGG - chr1.3:46829605-46829624 None:intergenic 35.0%
TCAGAGAATAATCCTCTTAC+CGG + chr1.3:46829815-46829834 MS.gene24576:CDS 35.0%
TCTAATTTCACCTTGATCTC+CGG - chr1.3:46829837-46829856 None:intergenic 35.0%
TGTTGGTGCATTTGTATAGT+TGG + chr1.3:46829189-46829208 MS.gene24576:intron 35.0%
TTCACATAAGGTGATGTTCT+TGG - chr1.3:46829734-46829753 None:intergenic 35.0%
TTTAGATAGGCAGCATATGT+GGG - chr1.3:46829560-46829579 None:intergenic 35.0%
! AAGGGTACATTGCATGAATT+TGG + chr1.3:46829496-46829515 MS.gene24576:CDS 35.0%
! TTTTAGATAGGCAGCATATG+TGG - chr1.3:46829561-46829580 None:intergenic 35.0%
!! CTTTCTCGTTTTCAAGCTAT+TGG + chr1.3:46829319-46829338 MS.gene24576:CDS 35.0%
!! TGATGATCTCTTCTGCTTTT+GGG - chr1.3:46828701-46828720 None:intergenic 35.0%
!! TTGAAAACGAGAAAGCACTA+AGG - chr1.3:46829314-46829333 None:intergenic 35.0%
!! TTGATGATCTCTTCTGCTTT+TGG - chr1.3:46828702-46828721 None:intergenic 35.0%
!!! CAAGAACATTTTGGAACACA+AGG + chr1.3:46829673-46829692 MS.gene24576:CDS 35.0%
!!! TGGGCATCTAAGTTTTAGAT+AGG - chr1.3:46829573-46829592 None:intergenic 35.0%
ACAGCATTTGGATCTGGATT+TGG - chr1.3:46829599-46829618 None:intergenic 40.0%
ATACTTGAAGTTTCGCATCC+CGG - chr1.3:46828966-46828985 None:intergenic 40.0%
ATTGCATGAATTTGGTCCAG+AGG + chr1.3:46829504-46829523 MS.gene24576:CDS 40.0%
CTTCCATGATTGCATAGTCA+AGG + chr1.3:46828785-46828804 MS.gene24576:CDS 40.0%
GTATAACGAGCATGGAAACA+CGG + chr1.3:46828740-46828759 MS.gene24576:CDS 40.0%
TCACCTTGACTATGCAATCA+TGG - chr1.3:46828791-46828810 None:intergenic 40.0%
TGAAATGAAGACAGGACGAA+GGG + chr1.3:46829225-46829244 MS.gene24576:CDS 40.0%
TTAGATAGGCAGCATATGTG+GGG - chr1.3:46829559-46829578 None:intergenic 40.0%
TTGAAATGAAGACAGGACGA+AGG + chr1.3:46829224-46829243 MS.gene24576:CDS 40.0%
! CGCAGCAGAGTTATCATTTT+TGG + chr1.3:46828824-46828843 MS.gene24576:intron 40.0%
! GTCACTTTGATTCAATCAGG+AGG + chr1.3:46829461-46829480 MS.gene24576:intron 40.0%
! TCGGTCACTTTGATTCAATC+AGG + chr1.3:46829458-46829477 MS.gene24576:intron 40.0%
! TTTCTCAACAGCAGCTTTGA+TGG - chr1.3:46828996-46829015 None:intergenic 40.0%
!! GCTGCCATCTTTTTCACATA+AGG - chr1.3:46829746-46829765 None:intergenic 40.0%
!! TTGGATCTGGATTTGGTGTT+GGG - chr1.3:46829592-46829611 None:intergenic 40.0%
!! TTTGGATCTGGATTTGGTGT+TGG - chr1.3:46829593-46829612 None:intergenic 40.0%
AATCCTCTTACCGGAGATCA+AGG + chr1.3:46829824-46829843 MS.gene24576:CDS 45.0%
AGACATCAGAGAGAAGTTCC+GGG + chr1.3:46828945-46828964 MS.gene24576:CDS 45.0%
AGCGGAAAGAGCAACAATGT+CGG - chr1.3:46829044-46829063 None:intergenic 45.0%
AGTACCTAACAGAGCAACAG+TGG - chr1.3:46829359-46829378 None:intergenic 45.0%
CAGACATCAGAGAGAAGTTC+CGG + chr1.3:46828944-46828963 MS.gene24576:CDS 45.0%
CATGGCAATTCCATCTCTAG+CGG - chr1.3:46829062-46829081 None:intergenic 45.0%
GGTGCATTTGTATAGTTGGG+AGG + chr1.3:46829193-46829212 MS.gene24576:intron 45.0%
GTGCGACTCTTAACATACCA+TGG - chr1.3:46829080-46829099 None:intergenic 45.0%
GTTCTTCATCCACAGTGAGT+AGG - chr1.3:46829700-46829719 None:intergenic 45.0%
TCGGCACATGATACTGTCAA+GGG - chr1.3:46829025-46829044 None:intergenic 45.0%
!! CATATGTGGGGTCTAGCTTT+GGG - chr1.3:46829547-46829566 None:intergenic 45.0%
!! TTCTGCTTTTGGGCAGCTTT+TGG - chr1.3:46828691-46828710 None:intergenic 45.0%
ATGAAGACAGGACGAAGGGA+TGG + chr1.3:46829229-46829248 MS.gene24576:CDS 50.0%
CAATCAGGAGGACACTCAGT+GGG + chr1.3:46829473-46829492 MS.gene24576:intron 50.0%
CGCTAGAGATGGAATTGCCA+TGG + chr1.3:46829060-46829079 MS.gene24576:CDS 50.0%
GAAGCCACTGTTGCTCTGTT+AGG + chr1.3:46829352-46829371 MS.gene24576:CDS 50.0%
GTCGGCACATGATACTGTCA+AGG - chr1.3:46829026-46829045 None:intergenic 50.0%
GTCGGTAGGCGATGTAGTAT+CGG + chr1.3:46828919-46828938 MS.gene24576:CDS 50.0%
GTTGCTCTTTCCGCTAGAGA+TGG + chr1.3:46829049-46829068 MS.gene24576:CDS 50.0%
TAACGAGCATGGAAACACGG+CGG + chr1.3:46828743-46828762 MS.gene24576:CDS 50.0%
TCAATCAGGAGGACACTCAG+TGG + chr1.3:46829472-46829491 MS.gene24576:intron 50.0%
TCACCTTGATCTCCGGTAAG+AGG - chr1.3:46829830-46829849 None:intergenic 50.0%
! GCATATGTGGGGTCTAGCTT+TGG - chr1.3:46829548-46829567 None:intergenic 50.0%
!! GCCTACCGACTCTAAAAGCA+GGG - chr1.3:46828909-46828928 None:intergenic 50.0%
!! TCTAGCTTTGGGTCCACTGT+GGG - chr1.3:46829536-46829555 None:intergenic 50.0%
!!! CGCATCCCTGCTTTTAGAGT+CGG + chr1.3:46828901-46828920 MS.gene24576:CDS 50.0%
!!! TCCCTGCTTTTAGAGTCGGT+AGG + chr1.3:46828905-46828924 MS.gene24576:CDS 50.0%
ACACAAGGGCCTACTCACTG+TGG + chr1.3:46829688-46829707 MS.gene24576:CDS 55.0%
AGGAGGACACTCAGTGGGAA+GGG + chr1.3:46829478-46829497 MS.gene24576:intron 55.0%
ATGGAAACACGGCGGTTTCG+TGG + chr1.3:46828751-46828770 MS.gene24576:CDS 55.0%
TGGAAACACGGCGGTTTCGT+GGG + chr1.3:46828752-46828771 MS.gene24576:CDS 55.0%
!! CGCCTACCGACTCTAAAAGC+AGG - chr1.3:46828910-46828929 None:intergenic 55.0%
!! CTAGCTTTGGGTCCACTGTG+GGG - chr1.3:46829535-46829554 None:intergenic 55.0%
!! GTCTAGCTTTGGGTCCACTG+TGG - chr1.3:46829537-46829556 None:intergenic 55.0%
CAGGAGGACACTCAGTGGGA+AGG + chr1.3:46829477-46829496 MS.gene24576:intron 60.0%
CCACTGTGGGGTATAGCCTC+TGG - chr1.3:46829523-46829542 None:intergenic 60.0%
CCAGAGGCTATACCCCACAG+TGG + chr1.3:46829520-46829539 MS.gene24576:CDS 60.0%
GGATGCGTCGCATGACTGCG+TGG - chr1.3:46828888-46828907 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 46828675 46829886 46828675 ID=MS.gene24576
chr1.3 mRNA 46828675 46829886 46828675 ID=MS.gene24576.t1;Parent=MS.gene24576
chr1.3 exon 46828675 46828806 46828675 ID=MS.gene24576.t1.exon1;Parent=MS.gene24576.t1
chr1.3 CDS 46828675 46828806 46828675 ID=cds.MS.gene24576.t1;Parent=MS.gene24576.t1
chr1.3 exon 46828893 46829081 46828893 ID=MS.gene24576.t1.exon2;Parent=MS.gene24576.t1
chr1.3 CDS 46828893 46829081 46828893 ID=cds.MS.gene24576.t1;Parent=MS.gene24576.t1
chr1.3 exon 46829208 46829373 46829208 ID=MS.gene24576.t1.exon3;Parent=MS.gene24576.t1
chr1.3 CDS 46829208 46829373 46829208 ID=cds.MS.gene24576.t1;Parent=MS.gene24576.t1
chr1.3 exon 46829480 46829886 46829480 ID=MS.gene24576.t1.exon4;Parent=MS.gene24576.t1
chr1.3 CDS 46829480 46829886 46829480 ID=cds.MS.gene24576.t1;Parent=MS.gene24576.t1
Gene Sequence

>MS.gene24576

ATGAACTACTACTCCAAAAGCTGCCCAAAAGCAGAAGAGATCATCAAACAAAAAGTCATTGAACTGTATAACGAGCATGGAAACACGGCGGTTTCGTGGGTTAGAAATCTCTTCCATGATTGCATAGTCAAGGTGAGTGTAAATGTAATCGCAGCAGAGTTATCATTTTTGGATTAAAGAAGCAATTGATAATGATATATATGTGGGTTTCCACGCAGTCATGCGACGCATCCCTGCTTTTAGAGTCGGTAGGCGATGTAGTATCGGAGCAGACATCAGAGAGAAGTTCCGGGATGCGAAACTTCAAGTATGTGAAAACCATCAAAGCTGCTGTTGAGAAAGAATGTCCCTTGACAGTATCATGTGCCGACATTGTTGCTCTTTCCGCTAGAGATGGAATTGCCATGGTATGTTAAGAGTCGCACATTAGAAATCTCACATTAAAAGTGAGACTTAAAATTCTAAAGATTCTTCTATCTTATAGAACATTGTAAATATTGGGTGTGAATTTTTATGTTGGTGCATTTGTATAGTTGGGAGGTCCAAAATTTGAAATGAAGACAGGACGAAGGGATGGCAAAGAAAGCCATGTAACAATGGTAGAAGAATTCATTCCAAACCATAATGACTCTATATCCTTAGTGCTTTCTCGTTTTCAAGCTATTGGTGTTGACGTTGAAGCCACTGTTGCTCTGTTAGGTACTACTGTGCATTCTAACATTTACTTTTTTTGGTCAATACATTCTAACATTGACTTCAAAAGTCAAACATAAACATAATTAATCGGTCACTTTGATTCAATCAGGAGGACACTCAGTGGGAAGGGTACATTGCATGAATTTGGTCCAGAGGCTATACCCCACAGTGGACCCAAAGCTAGACCCCACATATGCTGCCTATCTAAAACTTAGATGCCCAACACCAAATCCAGATCCAAATGCTGTTCTATATGCAAGAAATGATAGAAAAACGCCAATGATAATCGACAACAACTACTACAAGAACATTTTGGAACACAAGGGCCTACTCACTGTGGATGAAGAACTAGCTACTGATCCAAGAACATCACCTTATGTGAAAAAGATGGCAGCTGATAATGGATACTTCAATGAACAATTCTCAAGGGCTGTTCAATTGTTATCAGAGAATAATCCTCTTACCGGAGATCAAGGTGAAATTAGAAAGGATTGTCGTTACGTTAATGCCAATTAG
Protein sequence

>MS.gene24576.t1

MNYYSKSCPKAEEIIKQKVIELYNEHGNTAVSWVRNLFHDCIVKSCDASLLLESVGDVVSEQTSERSSGMRNFKYVKTIKAAVEKECPLTVSCADIVALSARDGIAMLGGPKFEMKTGRRDGKESHVTMVEEFIPNHNDSISLVLSRFQAIGVDVEATVALLGGHSVGRVHCMNLVQRLYPTVDPKLDPTYAAYLKLRCPTPNPDPNAVLYARNDRKTPMIIDNNYYKNILEHKGLLTVDEELATDPRTSPYVKKMAADNGYFNEQFSRAVQLLSENNPLTGDQGEIRKDCRYVNAN