Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060205.t1 | XP_003596337.1 | 98.2 | 227 | 4 | 0 | 1 | 227 | 1 | 227 | 5.00E-129 | 470.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060205.t1 | P16273 | 48.4 | 221 | 110 | 3 | 8 | 224 | 9 | 229 | 6.8e-58 | 225.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060205.t1 | Q2HSC5 | 98.2 | 227 | 4 | 0 | 1 | 227 | 1 | 227 | 3.6e-129 | 470.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050380 | MS.gene060205 | 0.803038 | 4.22E-49 | -1.69E-46 |
| MS.gene050381 | MS.gene060205 | 0.813952 | 1.97E-51 | -1.69E-46 |
| MS.gene050809 | MS.gene060205 | 0.807058 | 6.08E-50 | -1.69E-46 |
| MS.gene05104 | MS.gene060205 | 0.803338 | 3.66E-49 | -1.69E-46 |
| MS.gene051632 | MS.gene060205 | 0.817193 | 3.74E-52 | -1.69E-46 |
| MS.gene053488 | MS.gene060205 | 0.803889 | 2.81E-49 | -1.69E-46 |
| MS.gene055124 | MS.gene060205 | 0.828897 | 6.96E-55 | -1.69E-46 |
| MS.gene056920 | MS.gene060205 | 0.812752 | 3.62E-51 | -1.69E-46 |
| MS.gene056922 | MS.gene060205 | 0.806322 | 8.70E-50 | -1.69E-46 |
| MS.gene056924 | MS.gene060205 | 0.812337 | 4.46E-51 | -1.69E-46 |
| MS.gene058093 | MS.gene060205 | 0.826548 | 2.55E-54 | -1.69E-46 |
| MS.gene058099 | MS.gene060205 | 0.80348 | 3.42E-49 | -1.69E-46 |
| MS.gene058179 | MS.gene060205 | 0.835419 | 1.70E-56 | -1.69E-46 |
| MS.gene058180 | MS.gene060205 | 0.81269 | 3.73E-51 | -1.69E-46 |
| MS.gene058840 | MS.gene060205 | 0.801544 | 8.56E-49 | -1.69E-46 |
| MS.gene059037 | MS.gene060205 | 0.826288 | 2.94E-54 | -1.69E-46 |
| MS.gene059223 | MS.gene060205 | 0.825251 | 5.19E-54 | -1.69E-46 |
| MS.gene060205 | MS.gene060578 | 0.980806 | 4.46E-151 | -1.69E-46 |
| MS.gene060205 | MS.gene06074 | 0.808808 | 2.58E-50 | -1.69E-46 |
| MS.gene060205 | MS.gene063073 | 0.803096 | 4.10E-49 | -1.69E-46 |
| MS.gene060205 | MS.gene065240 | 0.801484 | 8.81E-49 | -1.69E-46 |
| MS.gene060205 | MS.gene065728 | 0.804037 | 2.62E-49 | -1.69E-46 |
| MS.gene060205 | MS.gene065729 | 0.800737 | 1.25E-48 | -1.69E-46 |
| MS.gene060205 | MS.gene065842 | 0.801031 | 1.09E-48 | -1.69E-46 |
| MS.gene060205 | MS.gene06593 | 0.809325 | 2.00E-50 | -1.69E-46 |
| MS.gene060205 | MS.gene066937 | 0.80222 | 6.22E-49 | -1.69E-46 |
| MS.gene060205 | MS.gene06805 | 0.800919 | 1.15E-48 | -1.69E-46 |
| MS.gene060205 | MS.gene068296 | 0.805971 | 1.03E-49 | -1.69E-46 |
| MS.gene060205 | MS.gene068297 | 0.843574 | 1.29E-58 | -1.69E-46 |
| MS.gene060205 | MS.gene069431 | 0.824866 | 6.40E-54 | -1.69E-46 |
| MS.gene060205 | MS.gene071838 | 0.818533 | 1.87E-52 | -1.69E-46 |
| MS.gene060205 | MS.gene071840 | 0.818382 | 2.02E-52 | -1.69E-46 |
| MS.gene060205 | MS.gene072609 | 0.813367 | 2.65E-51 | -1.69E-46 |
| MS.gene060205 | MS.gene072806 | 0.806498 | 7.99E-50 | -1.69E-46 |
| MS.gene060205 | MS.gene073777 | 0.836778 | 7.66E-57 | -1.69E-46 |
| MS.gene060205 | MS.gene07448 | 0.81498 | 1.17E-51 | -1.69E-46 |
| MS.gene060205 | MS.gene07612 | 0.800521 | 1.39E-48 | -1.69E-46 |
| MS.gene060205 | MS.gene08407 | 0.810057 | 1.39E-50 | -1.69E-46 |
| MS.gene060205 | MS.gene21350 | 0.807123 | 5.89E-50 | -1.69E-46 |
| MS.gene060205 | MS.gene21577 | 0.803591 | 3.24E-49 | -1.69E-46 |
| MS.gene060205 | MS.gene21772 | 0.80516 | 1.53E-49 | -1.69E-46 |
| MS.gene060205 | MS.gene21794 | 0.800784 | 1.23E-48 | -1.69E-46 |
| MS.gene060205 | MS.gene21856 | 0.812498 | 4.11E-51 | -1.69E-46 |
| MS.gene060205 | MS.gene24576 | 0.830288 | 3.20E-55 | -1.69E-46 |
| MS.gene060205 | MS.gene24974 | 0.840678 | 7.52E-58 | -1.69E-46 |
| MS.gene060205 | MS.gene26517 | 0.82596 | 3.52E-54 | -1.69E-46 |
| MS.gene060205 | MS.gene26860 | 0.811692 | 6.17E-51 | -1.69E-46 |
| MS.gene060205 | MS.gene27779 | 0.802838 | 4.64E-49 | -1.69E-46 |
| MS.gene060205 | MS.gene27827 | 0.803696 | 3.08E-49 | -1.69E-46 |
| MS.gene060205 | MS.gene30666 | 0.801055 | 1.08E-48 | -1.69E-46 |
| MS.gene060205 | MS.gene30911 | 0.837981 | 3.77E-57 | -1.69E-46 |
| MS.gene060205 | MS.gene33428 | 0.813342 | 2.69E-51 | -1.69E-46 |
| MS.gene060205 | MS.gene33682 | 0.812819 | 3.50E-51 | -1.69E-46 |
| MS.gene060205 | MS.gene35208 | 0.800677 | 1.29E-48 | -1.69E-46 |
| MS.gene060205 | MS.gene37192 | 0.807583 | 4.71E-50 | -1.69E-46 |
| MS.gene060205 | MS.gene38706 | 0.802272 | 6.07E-49 | -1.69E-46 |
| MS.gene060205 | MS.gene39533 | 0.822043 | 2.93E-53 | -1.69E-46 |
| MS.gene060205 | MS.gene39635 | 0.815495 | 8.98E-52 | -1.69E-46 |
| MS.gene060205 | MS.gene40493 | 0.804623 | 1.98E-49 | -1.69E-46 |
| MS.gene060205 | MS.gene42096 | 0.800739 | 1.25E-48 | -1.69E-46 |
| MS.gene060205 | MS.gene45854 | 0.812158 | 4.88E-51 | -1.69E-46 |
| MS.gene060205 | MS.gene46266 | 0.801546 | 8.56E-49 | -1.69E-46 |
| MS.gene060205 | MS.gene48169 | 0.808517 | 2.98E-50 | -1.69E-46 |
| MS.gene060205 | MS.gene48183 | 0.820495 | 6.65E-53 | -1.69E-46 |
| MS.gene060205 | MS.gene48921 | 0.81888 | 1.56E-52 | -1.69E-46 |
| MS.gene060205 | MS.gene49181 | 0.808001 | 3.84E-50 | -1.69E-46 |
| MS.gene060205 | MS.gene55801 | 0.81032 | 1.22E-50 | -1.69E-46 |
| MS.gene060205 | MS.gene56009 | 0.810499 | 1.12E-50 | -1.69E-46 |
| MS.gene060205 | MS.gene56509 | 0.800915 | 1.15E-48 | -1.69E-46 |
| MS.gene060205 | MS.gene57812 | 0.803259 | 3.80E-49 | -1.69E-46 |
| MS.gene060205 | MS.gene59005 | 0.800623 | 1.32E-48 | -1.69E-46 |
| MS.gene060205 | MS.gene59006 | 0.824621 | 7.31E-54 | -1.69E-46 |
| MS.gene060205 | MS.gene59273 | 0.815169 | 1.06E-51 | -1.69E-46 |
| MS.gene060205 | MS.gene59394 | 0.803252 | 3.81E-49 | -1.69E-46 |
| MS.gene060205 | MS.gene60477 | 0.801773 | 7.69E-49 | -1.69E-46 |
| MS.gene060205 | MS.gene61194 | 0.807128 | 5.88E-50 | -1.69E-46 |
| MS.gene060205 | MS.gene62114 | 0.813303 | 2.74E-51 | -1.69E-46 |
| MS.gene060205 | MS.gene63731 | 0.866779 | 2.22E-65 | -1.69E-46 |
| MS.gene060205 | MS.gene64372 | 0.800347 | 1.50E-48 | -1.69E-46 |
| MS.gene060205 | MS.gene66895 | 0.833111 | 6.43E-56 | -1.69E-46 |
| MS.gene060205 | MS.gene67371 | 0.820454 | 6.80E-53 | -1.69E-46 |
| MS.gene060205 | MS.gene68121 | 0.812994 | 3.20E-51 | -1.69E-46 |
| MS.gene060205 | MS.gene71346 | 0.802499 | 5.45E-49 | -1.69E-46 |
| MS.gene060205 | MS.gene75396 | 0.815697 | 8.10E-52 | -1.69E-46 |
| MS.gene060205 | MS.gene81770 | 0.844652 | 6.62E-59 | -1.69E-46 |
| MS.gene060205 | MS.gene81771 | 0.804922 | 1.71E-49 | -1.69E-46 |
| MS.gene060205 | MS.gene81774 | 0.803677 | 3.11E-49 | -1.69E-46 |
| MS.gene060205 | MS.gene82532 | 0.834029 | 3.80E-56 | -1.69E-46 |
| MS.gene060205 | MS.gene84568 | 0.818432 | 1.97E-52 | -1.69E-46 |
| MS.gene060205 | MS.gene85750 | 0.810949 | 8.94E-51 | -1.69E-46 |
| MS.gene060205 | MS.gene88816 | 0.806475 | 8.08E-50 | -1.69E-46 |
| MS.gene060205 | MS.gene89261 | 0.803911 | 2.78E-49 | -1.69E-46 |
| MS.gene060205 | MS.gene94790 | 0.816822 | 4.53E-52 | -1.69E-46 |
| MS.gene060205 | MS.gene97499 | 0.80125 | 9.84E-49 | -1.69E-46 |
| MS.gene060205 | MS.gene97500 | 0.816964 | 4.22E-52 | -1.69E-46 |
| MS.gene060205 | MS.gene98076 | 0.811351 | 7.31E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060205.t1 | MTR_2g076070 | 98.238 | 227 | 4 | 0 | 1 | 227 | 1 | 227 | 1.78e-167 | 461 |
| MS.gene060205.t1 | MTR_2g076010 | 90.749 | 227 | 21 | 0 | 1 | 227 | 1 | 227 | 6.37e-157 | 434 |
| MS.gene060205.t1 | MTR_8g058350 | 75.330 | 227 | 51 | 2 | 5 | 226 | 10 | 236 | 5.99e-126 | 356 |
| MS.gene060205.t1 | MTR_2g076070 | 97.561 | 164 | 4 | 0 | 64 | 227 | 1 | 164 | 1.84e-116 | 329 |
| MS.gene060205.t1 | MTR_2g076010 | 89.634 | 164 | 17 | 0 | 64 | 227 | 1 | 164 | 1.62e-108 | 309 |
| MS.gene060205.t1 | MTR_8g058700 | 47.525 | 101 | 22 | 2 | 90 | 190 | 13 | 82 | 5.80e-21 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060205.t1 | AT1G78780 | 71.186 | 236 | 55 | 3 | 5 | 227 | 17 | 252 | 6.20e-121 | 344 |
| MS.gene060205.t1 | AT1G78780 | 71.186 | 236 | 55 | 3 | 5 | 227 | 17 | 252 | 6.20e-121 | 344 |
| MS.gene060205.t1 | AT1G78780 | 69.874 | 239 | 59 | 3 | 1 | 227 | 1 | 238 | 1.46e-120 | 342 |
| MS.gene060205.t1 | AT1G78780 | 68.619 | 239 | 59 | 4 | 1 | 227 | 1 | 235 | 3.50e-116 | 331 |
| MS.gene060205.t1 | AT1G78780 | 70.455 | 176 | 40 | 2 | 64 | 227 | 1 | 176 | 1.91e-87 | 256 |
Find 61 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTCAAGTTCTTTGTTAA+TGG | 0.183252 | 2.3:-20815012 | MS.gene060205:intron |
| GTAAACAACTTATAATTAAT+TGG | 0.210864 | 2.3:+20812648 | None:intergenic |
| CTGAAATTGCTTTCAAGTTT+AGG | 0.246221 | 2.3:-20813529 | MS.gene060205:CDS |
| CTAAACTTGAAAGCAATTTC+AGG | 0.282078 | 2.3:+20813530 | None:intergenic |
| TGCTTTCAAGTTTAGGCATT+GGG | 0.293525 | 2.3:-20813522 | MS.gene060205:CDS |
| GTCTCTTCATTTGACTTGTA+TGG | 0.318507 | 2.3:+20813635 | None:intergenic |
| GTTTCCTCCAATGATCCTTC+TGG | 0.340734 | 2.3:+20815117 | None:intergenic |
| GTAGGGGCATGTCCCTTAAA+AGG | 0.343475 | 2.3:+20813485 | None:intergenic |
| TTGTATGGCTTGAAATCTTC+AGG | 0.351240 | 2.3:+20813650 | None:intergenic |
| TCCTTCCTTCTTCAAAGAGC+TGG | 0.367470 | 2.3:+20815248 | None:intergenic |
| TATGACCCAGGAGAGTTGTT+TGG | 0.376206 | 2.3:-20812721 | MS.gene060205:CDS |
| GAATGGACATGCTGAAGTTT+TGG | 0.380812 | 2.3:+20812672 | None:intergenic |
| GACACACAAGATCCGCTTGC+AGG | 0.389775 | 2.3:-20815058 | MS.gene060205:CDS |
| TGCTATCTCCGCTTGATAGA+AGG | 0.400178 | 2.3:+20812695 | None:intergenic |
| AGGCATTGGGGATTCTTTGA+AGG | 0.405743 | 2.3:-20813509 | MS.gene060205:CDS |
| TCTTGGAAAAGCTGATTTGA+AGG | 0.414467 | 2.3:+20813592 | None:intergenic |
| GATGGTCCAATTCTCTGGCT+TGG | 0.418419 | 2.3:-20813456 | MS.gene060205:CDS |
| ATGGTCCAATTCTCTGGCTT+GGG | 0.433013 | 2.3:-20813455 | MS.gene060205:CDS |
| ATTTCCCATGCAAATCCTCT+TGG | 0.434442 | 2.3:+20813575 | None:intergenic |
| GAGTTCCCAAGCCAGAGAAT+TGG | 0.445368 | 2.3:+20813450 | None:intergenic |
| GGAAAGATGGTCCAATTCTC+TGG | 0.445571 | 2.3:-20813461 | MS.gene060205:CDS |
| GTCAACCAGCTCTTTGAAGA+AGG | 0.445909 | 2.3:-20815253 | MS.gene060205:CDS |
| TTTAAGGGACATGCCCCTAC+TGG | 0.446687 | 2.3:-20813482 | MS.gene060205:CDS |
| CTAGGTGGATGACACTTTGA+AGG | 0.455213 | 2.3:-20812764 | MS.gene060205:intron |
| ACTTATAATTAATTGGAGAA+TGG | 0.459539 | 2.3:+20812655 | None:intergenic |
| AGGCCTCCAAACAACTCTCC+TGG | 0.465379 | 2.3:+20812715 | None:intergenic |
| TGCAAAATGCTATTAAGTCA+TGG | 0.470507 | 2.3:-20815092 | MS.gene060205:CDS |
| CACTTTGAAGGTTGAAGAAG+TGG | 0.475985 | 2.3:-20812752 | MS.gene060205:CDS |
| CATGGTGGCCCTCCCACCTA+TGG | 0.478252 | 2.3:-20815280 | MS.gene060205:CDS |
| GGAATGGCCAGAAGGATCAT+TGG | 0.485397 | 2.3:-20815124 | MS.gene060205:CDS |
| TTGCTTTCAAGTTTAGGCAT+TGG | 0.497447 | 2.3:-20813523 | MS.gene060205:CDS |
| TGCTATTAAGTCATGGGAGA+TGG | 0.500588 | 2.3:-20815085 | MS.gene060205:CDS |
| GACCCAGGAGAGTTGTTTGG+AGG | 0.521378 | 2.3:-20812718 | MS.gene060205:CDS |
| TTTCTAATTGCAGGCAGGGA+GGG | 0.527343 | 2.3:-20813734 | MS.gene060205:intron |
| GGCCTCCAAACAACTCTCCT+GGG | 0.528244 | 2.3:+20812716 | None:intergenic |
| GCAAAATGCTATTAAGTCAT+GGG | 0.533576 | 2.3:-20815091 | MS.gene060205:CDS |
| ACATGCCCCTACTGGAAAGA+TGG | 0.534599 | 2.3:-20813474 | MS.gene060205:CDS |
| GAGAATATCCAGTGGAGACA+TGG | 0.538003 | 2.3:-20815298 | MS.gene060205:CDS |
| CTCTGGCTTGGGAACTCTCA+AGG | 0.542832 | 2.3:-20813444 | MS.gene060205:intron |
| CTGGTTGACAAGACCATAGG+TGG | 0.543209 | 2.3:+20815267 | None:intergenic |
| GAGGGCCACCATGTCTCCAC+TGG | 0.548695 | 2.3:+20815290 | None:intergenic |
| ATTGGACCATCTTTCCAGTA+GGG | 0.558086 | 2.3:+20813468 | None:intergenic |
| AATTGGACCATCTTTCCAGT+AGG | 0.570938 | 2.3:+20813467 | None:intergenic |
| ACCAGCTCTTTGAAGAAGGA+AGG | 0.578694 | 2.3:-20815249 | MS.gene060205:CDS |
| GTGGAGATTTACTATGACCC+AGG | 0.582286 | 2.3:-20812733 | MS.gene060205:CDS |
| GCAGAGGAAACTCTAAGCAT+AGG | 0.582569 | 2.3:-20813704 | MS.gene060205:CDS |
| GCTTTCAAGTTTAGGCATTG+GGG | 0.594203 | 2.3:-20813521 | MS.gene060205:CDS |
| TGACAAGACCATAGGTGGGA+GGG | 0.603232 | 2.3:+20815272 | None:intergenic |
| TTTGGAGGCCTTCTATCAAG+CGG | 0.613986 | 2.3:-20812703 | MS.gene060205:CDS |
| TTGGACCATCTTTCCAGTAG+GGG | 0.615171 | 2.3:+20813469 | None:intergenic |
| ATGGCCAGAAGGATCATTGG+AGG | 0.617256 | 2.3:-20815121 | MS.gene060205:CDS |
| GAGCTGGTTGACAAGACCAT+AGG | 0.618838 | 2.3:+20815264 | None:intergenic |
| AACTTGAAAGCAATTTCAGG+TGG | 0.634134 | 2.3:+20813533 | None:intergenic |
| GAAATCATTAAAGTTTACAC+AGG | 0.640637 | 2.3:-20813557 | MS.gene060205:CDS |
| TGGTCTTGAAGTCCTGCAAG+CGG | 0.649941 | 2.3:+20815046 | None:intergenic |
| ATTTCTAATTGCAGGCAGGG+AGG | 0.661707 | 2.3:-20813735 | MS.gene060205:intron |
| AATATCCAGTGGAGACATGG+TGG | 0.668708 | 2.3:-20815295 | MS.gene060205:CDS |
| CAGGGAGGGATTAACTGCAG+AGG | 0.669645 | 2.3:-20813720 | MS.gene060205:CDS |
| TTGACAAGACCATAGGTGGG+AGG | 0.674543 | 2.3:+20815271 | None:intergenic |
| ATGAAGCTGAGAATATCCAG+TGG | 0.685948 | 2.3:-20815306 | MS.gene060205:CDS |
| TGGTTGACAAGACCATAGGT+GGG | 0.689395 | 2.3:+20815268 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAATTTAAATATAATAA+AGG | - | chr2.3:20814852-20814871 | MS.gene060205:intron | 0.0% |
| !! | AATTTAAATATAATAAAGGA+AGG | - | chr2.3:20814856-20814875 | MS.gene060205:intron | 10.0% |
| !! | TAAAATAAATGATAATCTAA+TGG | + | chr2.3:20815134-20815153 | None:intergenic | 10.0% |
| !!! | GATAAAAATTATTTCAATTT+TGG | - | chr2.3:20813298-20813317 | MS.gene060205:intron | 10.0% |
| !! | GAATTATACAAAATTATTAG+TGG | - | chr2.3:20813189-20813208 | MS.gene060205:intron | 15.0% |
| !! | TATGAATTATAATTCTATGA+AGG | - | chr2.3:20813098-20813117 | MS.gene060205:intron | 15.0% |
| !! | TTAAAATGAGAAATTTAACA+TGG | + | chr2.3:20814711-20814730 | None:intergenic | 15.0% |
| !!! | AACAATAATTTTTTTAACCT+AGG | - | chr2.3:20815233-20815252 | MS.gene060205:intron | 15.0% |
| !!! | ATTGAAATAATTTTTATCCA+AGG | + | chr2.3:20813296-20813315 | None:intergenic | 15.0% |
| !!! | TTCAAATTTCAATGTTTTTT+TGG | + | chr2.3:20814930-20814949 | None:intergenic | 15.0% |
| !!! | TTTTCTTAACAAATTTTTGT+AGG | - | chr2.3:20812870-20812889 | MS.gene060205:intron | 15.0% |
| !! | AAAATTGAGAAAGAATTACA+TGG | + | chr2.3:20812854-20812873 | None:intergenic | 20.0% |
| !! | AATTAATAAGAAAATACCCA+TGG | + | chr2.3:20814761-20814780 | None:intergenic | 20.0% |
| !! | AATTATAATTCTATGAAGGA+CGG | - | chr2.3:20813102-20813121 | MS.gene060205:intron | 20.0% |
| !! | AGATTAATGAATATACCAAT+AGG | + | chr2.3:20813433-20813452 | None:intergenic | 20.0% |
| !! | AGTGATGTATAAAATATAGA+GGG | + | chr2.3:20815209-20815228 | None:intergenic | 20.0% |
| !! | ATGATCTGAATTTAATTGTT+TGG | - | chr2.3:20814618-20814637 | MS.gene060205:intron | 20.0% |
| !! | ATTAATAAGAAAATACCCAT+GGG | + | chr2.3:20814760-20814779 | None:intergenic | 20.0% |
| !! | TAACTATAGAAATTAGATAC+AGG | + | chr2.3:20814211-20814230 | None:intergenic | 20.0% |
| !! | TAATATATGAAACATGGATA+CGG | + | chr2.3:20813256-20813275 | None:intergenic | 20.0% |
| !! | TAGTGATGTATAAAATATAG+AGG | + | chr2.3:20815210-20815229 | None:intergenic | 20.0% |
| !! | TATTATTAATTGGATTCAAG+TGG | - | chr2.3:20814009-20814028 | MS.gene060205:intron | 20.0% |
| !!! | AAATTCAAGTTCTTTGTTAA+TGG | - | chr2.3:20813003-20813022 | MS.gene060205:intron | 20.0% |
| !!! | AACAGCTATATTTTTTACTT+CGG | + | chr2.3:20813578-20813597 | None:intergenic | 20.0% |
| !!! | AAGTTAGCAATGATTTTTTT+AGG | - | chr2.3:20813932-20813951 | MS.gene060205:intron | 20.0% |
| !!! | AATAATTTTTTTAACCTAGG+TGG | - | chr2.3:20815236-20815255 | MS.gene060205:intron | 20.0% |
| !!! | AATTCAATATTTCTAATTGC+AGG | - | chr2.3:20814272-20814291 | MS.gene060205:intron | 20.0% |
| !!! | AGTTAGCAATGATTTTTTTA+GGG | - | chr2.3:20813933-20813952 | MS.gene060205:intron | 20.0% |
| !!! | GTAAATGATTCAAATTTGTT+TGG | - | chr2.3:20813032-20813051 | MS.gene060205:intron | 20.0% |
| !!! | TAAATTTTAATGTTATCCCT+TGG | + | chr2.3:20814842-20814861 | None:intergenic | 20.0% |
| !!! | TATCAAAATTTGAGATCAAT+TGG | - | chr2.3:20814181-20814200 | MS.gene060205:intron | 20.0% |
| !!! | TGAGAAATTTAAAATGATCA+AGG | + | chr2.3:20814666-20814685 | None:intergenic | 20.0% |
| !!! | TTAACAAATTTTTGTAGGAA+TGG | - | chr2.3:20812875-20812894 | MS.gene060205:intron | 20.0% |
| !!! | TTTATCTTTTTAATGGGTTT+AGG | - | chr2.3:20813349-20813368 | MS.gene060205:intron | 20.0% |
| ! | AAATGGAGAATAAGATTAAG+AGG | + | chr2.3:20812813-20812832 | None:intergenic | 25.0% |
| ! | AGTGATATGATATATGTGAT+AGG | + | chr2.3:20815053-20815072 | None:intergenic | 25.0% |
| ! | ATATGATATATGTGATAGGT+CGG | + | chr2.3:20815049-20815068 | None:intergenic | 25.0% |
| ! | CGATCATAATATATGAAACA+TGG | + | chr2.3:20813262-20813281 | None:intergenic | 25.0% |
| ! | GAAATCATTAAAGTTTACAC+AGG | - | chr2.3:20814458-20814477 | MS.gene060205:intron | 25.0% |
| ! | TATTAAACTTCGATTCTAAG+AGG | + | chr2.3:20814154-20814173 | None:intergenic | 25.0% |
| ! | TTAATAAGAAAATACCCATG+GGG | + | chr2.3:20814759-20814778 | None:intergenic | 25.0% |
| !! | ACAAAGAACTTGAATTTTTC+AGG | + | chr2.3:20813000-20813019 | None:intergenic | 25.0% |
| !! | CAAAGAACTTGAATTTTTCA+GGG | + | chr2.3:20812999-20813018 | None:intergenic | 25.0% |
| !! | GAAATAATTTTTATCCAAGG+TGG | + | chr2.3:20813293-20813312 | None:intergenic | 25.0% |
| !! | TTAATTTTTACTGCAAGCAA+AGG | - | chr2.3:20814727-20814746 | MS.gene060205:intron | 25.0% |
| !! | TTTGATTCGTCAAAAAACAA+AGG | - | chr2.3:20813862-20813881 | MS.gene060205:intron | 25.0% |
| !!! | GTTAGCAATGATTTTTTTAG+GGG | - | chr2.3:20813934-20813953 | MS.gene060205:intron | 25.0% |
| AAAAAGTTGTTCTCATAAGG+TGG | + | chr2.3:20815182-20815201 | None:intergenic | 30.0% | |
| AAACAAAACACCAATGTTCT+TGG | + | chr2.3:20813634-20813653 | None:intergenic | 30.0% | |
| AAATAGAAAGGAAGATACCA+AGG | - | chr2.3:20814822-20814841 | MS.gene060205:intron | 30.0% | |
| AATAGAAAGGAAGATACCAA+GGG | - | chr2.3:20814823-20814842 | MS.gene060205:intron | 30.0% | |
| AGGAATGAGTTATGGTAATT+CGG | + | chr2.3:20814134-20814153 | None:intergenic | 30.0% | |
| AGTAGAATACGTAGAAAACT+TGG | - | chr2.3:20813486-20813505 | MS.gene060205:CDS | 30.0% | |
| AGTTATGGTAATTCGGAATT+CGG | + | chr2.3:20814127-20814146 | None:intergenic | 30.0% | |
| ATAATCTAGAGAGGAAGAAA+TGG | + | chr2.3:20812830-20812849 | None:intergenic | 30.0% | |
| ATCAGACTATACTTACCAAA+CGG | - | chr2.3:20814101-20814120 | MS.gene060205:intron | 30.0% | |
| ATTAATTGGATTCAAGTGGT+TGG | - | chr2.3:20814013-20814032 | MS.gene060205:intron | 30.0% | |
| CTAAACTTGAAAGCAATTTC+AGG | + | chr2.3:20814488-20814507 | None:intergenic | 30.0% | |
| GATGTATAAAATATAGAGGG+TGG | + | chr2.3:20815206-20815225 | None:intergenic | 30.0% | |
| GCAAAATGCTATTAAGTCAT+GGG | - | chr2.3:20812924-20812943 | MS.gene060205:intron | 30.0% | |
| GGTAAAAAGTTGTTCTCATA+AGG | + | chr2.3:20815185-20815204 | None:intergenic | 30.0% | |
| GTGGAGTAAGAGAATAAAAA+CGG | + | chr2.3:20815163-20815182 | None:intergenic | 30.0% | |
| TGCAAAATGCTATTAAGTCA+TGG | - | chr2.3:20812923-20812942 | MS.gene060205:intron | 30.0% | |
| TGGAGTAAGAGAATAAAAAC+GGG | + | chr2.3:20815162-20815181 | None:intergenic | 30.0% | |
| TTACATGGTATAATCTAGAG+AGG | + | chr2.3:20812839-20812858 | None:intergenic | 30.0% | |
| ! | AATATTTCTAATTGCAGGCA+GGG | - | chr2.3:20814277-20814296 | MS.gene060205:intron | 30.0% |
| ! | AATTTTTATCCAAGGTGGAT+AGG | + | chr2.3:20813288-20813307 | None:intergenic | 30.0% |
| ! | ATTCTAAGAGGAATGAGTTA+TGG | + | chr2.3:20814142-20814161 | None:intergenic | 30.0% |
| ! | CTTGTACTTTGCTTAGATTT+TGG | - | chr2.3:20813666-20813685 | MS.gene060205:CDS | 30.0% |
| !! | ATTCTTTGAAGGTCCTTTTA+AGG | - | chr2.3:20814517-20814536 | MS.gene060205:intron | 30.0% |
| !! | CTGAAATTGCTTTCAAGTTT+AGG | - | chr2.3:20814486-20814505 | MS.gene060205:intron | 30.0% |
| !! | TTCTTTGAAGGTCCTTTTAA+GGG | - | chr2.3:20814518-20814537 | MS.gene060205:intron | 30.0% |
| !!! | TTAATTTGTTTTGCGTGTGT+AGG | - | chr2.3:20814775-20814794 | MS.gene060205:intron | 30.0% |
| !!! | TTTTTTCCTAAATCATCGCT+TGG | + | chr2.3:20813386-20813405 | None:intergenic | 30.0% |
| AACTTGAAAGCAATTTCAGG+TGG | + | chr2.3:20814485-20814504 | None:intergenic | 35.0% | |
| ACAAGTGAAGGAATCACTTT+AGG | + | chr2.3:20813548-20813567 | None:intergenic | 35.0% | |
| AGGATGTGATGATTTCACTT+TGG | + | chr2.3:20812793-20812812 | None:intergenic | 35.0% | |
| AGTAAGAGAATAAAAACGGG+TGG | + | chr2.3:20815159-20815178 | None:intergenic | 35.0% | |
| ATGAAACATGGATACGGATA+CGG | + | chr2.3:20813250-20813269 | None:intergenic | 35.0% | |
| ATTCAAACCCAGCATCATAA+CGG | + | chr2.3:20813827-20813846 | None:intergenic | 35.0% | |
| GAACAAACGATTGTGAAGAT+GGG | - | chr2.3:20813791-20813810 | MS.gene060205:intron | 35.0% | |
| GAGGCTGTAATCAAATAGAA+AGG | - | chr2.3:20814810-20814829 | MS.gene060205:intron | 35.0% | |
| TTGTATGGCTTGAAATCTTC+AGG | + | chr2.3:20814368-20814387 | None:intergenic | 35.0% | |
| ! | AATTTTCCCGTTATGATGCT+GGG | - | chr2.3:20813817-20813836 | MS.gene060205:intron | 35.0% |
| ! | CAATATTTCTAATTGCAGGC+AGG | - | chr2.3:20814276-20814295 | MS.gene060205:intron | 35.0% |
| ! | TGTTCTTTCTAGTAGTAGAG+CGG | - | chr2.3:20813605-20813624 | MS.gene060205:CDS | 35.0% |
| ! | TGTTTTCCAAGCGATGATTT+AGG | - | chr2.3:20813377-20813396 | MS.gene060205:intron | 35.0% |
| ! | TTCAAATCAGCTTTTCCAAG+AGG | - | chr2.3:20814425-20814444 | MS.gene060205:intron | 35.0% |
| ! | TTTTCCAAGAGGATTTGCAT+GGG | - | chr2.3:20814436-20814455 | MS.gene060205:intron | 35.0% |
| !! | GTCTCTTCATTTGACTTGTA+TGG | + | chr2.3:20814383-20814402 | None:intergenic | 35.0% |
| !! | TCTTGGAAAAGCTGATTTGA+AGG | + | chr2.3:20814426-20814445 | None:intergenic | 35.0% |
| !! | TGCTTTCAAGTTTAGGCATT+GGG | - | chr2.3:20814493-20814512 | MS.gene060205:intron | 35.0% |
| !! | TTGCTTTCAAGTTTAGGCAT+TGG | - | chr2.3:20814492-20814511 | MS.gene060205:intron | 35.0% |
| !!! | CTTGAATTTTTCAGGGACAA+TGG | + | chr2.3:20812992-20813011 | None:intergenic | 35.0% |
| AATTGGACCATCTTTCCAGT+AGG | + | chr2.3:20814551-20814570 | None:intergenic | 40.0% | |
| ATGAAGCTGAGAATATCCAG+TGG | - | chr2.3:20812709-20812728 | MS.gene060205:CDS | 40.0% | |
| ATTGGACCATCTTTCCAGTA+GGG | + | chr2.3:20814550-20814569 | None:intergenic | 40.0% | |
| ATTTCCCATGCAAATCCTCT+TGG | + | chr2.3:20814443-20814462 | None:intergenic | 40.0% | |
| CCATCAAAGACAAATCGTTC+AGG | - | chr2.3:20814044-20814063 | MS.gene060205:intron | 40.0% | |
| CCTGAACGATTTGTCTTTGA+TGG | + | chr2.3:20814047-20814066 | None:intergenic | 40.0% | |
| CGAACAAACGATTGTGAAGA+TGG | - | chr2.3:20813790-20813809 | MS.gene060205:intron | 40.0% | |
| CGCATGTAAGAGACTTTGTA+TGG | - | chr2.3:20813754-20813773 | MS.gene060205:intron | 40.0% | |
| GCTTACATCATCGATCCTAT+TGG | - | chr2.3:20813415-20813434 | MS.gene060205:intron | 40.0% | |
| GGAGAATGAGTTCGATTTCT+AGG | - | chr2.3:20814065-20814084 | MS.gene060205:intron | 40.0% | |
| TATGAAGGACGGACAATCAT+CGG | - | chr2.3:20813113-20813132 | MS.gene060205:intron | 40.0% | |
| TGCTATTAAGTCATGGGAGA+TGG | - | chr2.3:20812930-20812949 | MS.gene060205:intron | 40.0% | |
| TTCAAACCCAGCATCATAAC+GGG | + | chr2.3:20813826-20813845 | None:intergenic | 40.0% | |
| TTCGGATGATACACAAGTGA+AGG | + | chr2.3:20813560-20813579 | None:intergenic | 40.0% | |
| ! | AATTCAGTTCGTGTCGTTGT+CGG | + | chr2.3:20813174-20813193 | None:intergenic | 40.0% |
| ! | CACTTTGAAGGTTGAAGAAG+TGG | - | chr2.3:20815263-20815282 | MS.gene060205:CDS | 40.0% |
| ! | CTTTTCCAAGAGGATTTGCA+TGG | - | chr2.3:20814435-20814454 | MS.gene060205:intron | 40.0% |
| ! | GAATGGACATGCTGAAGTTT+TGG | + | chr2.3:20815346-20815365 | None:intergenic | 40.0% |
| ! | GAATTTTCCCGTTATGATGC+TGG | - | chr2.3:20813816-20813835 | MS.gene060205:intron | 40.0% |
| ! | TTTTTGTAGGAATGGCCAGA+AGG | - | chr2.3:20812883-20812902 | MS.gene060205:intron | 40.0% |
| !! | GCTTTCAAGTTTAGGCATTG+GGG | - | chr2.3:20814494-20814513 | MS.gene060205:intron | 40.0% |
| AATATCCAGTGGAGACATGG+TGG | - | chr2.3:20812720-20812739 | MS.gene060205:CDS | 45.0% | |
| ATCAGTATCTGTGTCGTGTC+TGG | - | chr2.3:20813221-20813240 | MS.gene060205:intron | 45.0% | |
| ATTTCTAATTGCAGGCAGGG+AGG | - | chr2.3:20814280-20814299 | MS.gene060205:intron | 45.0% | |
| CTAGGTGGATGACACTTTGA+AGG | - | chr2.3:20815251-20815270 | MS.gene060205:CDS | 45.0% | |
| GAGAATATCCAGTGGAGACA+TGG | - | chr2.3:20812717-20812736 | MS.gene060205:CDS | 45.0% | |
| GCAGAGGAAACTCTAAGCAT+AGG | - | chr2.3:20814311-20814330 | MS.gene060205:intron | 45.0% | |
| GGAAAGATGGTCCAATTCTC+TGG | - | chr2.3:20814554-20814573 | MS.gene060205:intron | 45.0% | |
| GTGGAGATTTACTATGACCC+AGG | - | chr2.3:20815282-20815301 | MS.gene060205:CDS | 45.0% | |
| GTTTCCTCCAATGATCCTTC+TGG | + | chr2.3:20812901-20812920 | None:intergenic | 45.0% | |
| TAATTCGGAATTCGGCCGTT+TGG | + | chr2.3:20814119-20814138 | None:intergenic | 45.0% | |
| TATGACCCAGGAGAGTTGTT+TGG | - | chr2.3:20815294-20815313 | MS.gene060205:CDS | 45.0% | |
| TATGTGATAGGTCGGAGATG+TGG | + | chr2.3:20815041-20815060 | None:intergenic | 45.0% | |
| TCCTTCCTTCTTCAAAGAGC+TGG | + | chr2.3:20812770-20812789 | None:intergenic | 45.0% | |
| TGCTATCTCCGCTTGATAGA+AGG | + | chr2.3:20815323-20815342 | None:intergenic | 45.0% | |
| TGGTTGACAAGACCATAGGT+GGG | + | chr2.3:20812750-20812769 | None:intergenic | 45.0% | |
| TTGGACCATCTTTCCAGTAG+GGG | + | chr2.3:20814549-20814568 | None:intergenic | 45.0% | |
| TTTACTGCAAGCAAAGGCCA+TGG | - | chr2.3:20814733-20814752 | MS.gene060205:intron | 45.0% | |
| TTTCTAATTGCAGGCAGGGA+GGG | - | chr2.3:20814281-20814300 | MS.gene060205:intron | 45.0% | |
| TTTGGAGGCCTTCTATCAAG+CGG | - | chr2.3:20815312-20815331 | MS.gene060205:CDS | 45.0% | |
| ! | ACCAGCTCTTTGAAGAAGGA+AGG | - | chr2.3:20812766-20812785 | MS.gene060205:intron | 45.0% |
| ! | ATGGTCCAATTCTCTGGCTT+GGG | - | chr2.3:20814560-20814579 | MS.gene060205:intron | 45.0% |
| ! | CTTCAAAGTGTCATCCACCT+AGG | + | chr2.3:20815253-20815272 | None:intergenic | 45.0% |
| ! | GTCAACCAGCTCTTTGAAGA+AGG | - | chr2.3:20812762-20812781 | MS.gene060205:CDS | 45.0% |
| ! | GTGTAGGTTGACTTTGTACG+AGG | - | chr2.3:20814791-20814810 | MS.gene060205:intron | 45.0% |
| !! | AGGCATTGGGGATTCTTTGA+AGG | - | chr2.3:20814506-20814525 | MS.gene060205:intron | 45.0% |
| !!! | ATTTTTATTTATCTTTTTAA+TGG | - | chr2.3:20813342-20813361 | MS.gene060205:intron | 5.0% |
| !!! | ATTTTTTGAATATTATTAAT+TGG | - | chr2.3:20813999-20814018 | MS.gene060205:intron | 5.0% |
| !!! | TTTTTATTTATCTTTTTAAT+GGG | - | chr2.3:20813343-20813362 | MS.gene060205:intron | 5.0% |
| ACATGCCCCTACTGGAAAGA+TGG | - | chr2.3:20814541-20814560 | MS.gene060205:intron | 50.0% | |
| AGAAAATACCCATGGGGCCA+TGG | + | chr2.3:20814753-20814772 | None:intergenic | 50.0% | |
| ATGGCCAGAAGGATCATTGG+AGG | - | chr2.3:20812894-20812913 | MS.gene060205:intron | 50.0% | |
| CACGACACATTTCCGATACC+AGG | + | chr2.3:20813150-20813169 | None:intergenic | 50.0% | |
| CTGGTTGACAAGACCATAGG+TGG | + | chr2.3:20812751-20812770 | None:intergenic | 50.0% | |
| GAGCTGGTTGACAAGACCAT+AGG | + | chr2.3:20812754-20812773 | None:intergenic | 50.0% | |
| GAGTTCCCAAGCCAGAGAAT+TGG | + | chr2.3:20814568-20814587 | None:intergenic | 50.0% | |
| GATGGTCCAATTCTCTGGCT+TGG | - | chr2.3:20814559-20814578 | MS.gene060205:intron | 50.0% | |
| GATTAGGCGTGTCCTGGTAT+CGG | - | chr2.3:20813135-20813154 | MS.gene060205:intron | 50.0% | |
| GGAATGGCCAGAAGGATCAT+TGG | - | chr2.3:20812891-20812910 | MS.gene060205:intron | 50.0% | |
| GGACGGACAATCATCGGATT+AGG | - | chr2.3:20813119-20813138 | MS.gene060205:intron | 50.0% | |
| TGACAAGACCATAGGTGGGA+GGG | + | chr2.3:20812746-20812765 | None:intergenic | 50.0% | |
| TGATAGGTCGGAGATGTGGT+AGG | + | chr2.3:20815037-20815056 | None:intergenic | 50.0% | |
| TTGACAAGACCATAGGTGGG+AGG | + | chr2.3:20812747-20812766 | None:intergenic | 50.0% | |
| TTTAAGGGACATGCCCCTAC+TGG | - | chr2.3:20814533-20814552 | MS.gene060205:intron | 50.0% | |
| ! | GTAGGGGCATGTCCCTTAAA+AGG | + | chr2.3:20814533-20814552 | None:intergenic | 50.0% |
| ! | TGATCGACTCCTATCCACCT+TGG | - | chr2.3:20813276-20813295 | MS.gene060205:intron | 50.0% |
| ! | TGGTCTTGAAGTCCTGCAAG+CGG | + | chr2.3:20812972-20812991 | None:intergenic | 50.0% |
| AGAGCGGCTGCCAAGAACAT+TGG | - | chr2.3:20813621-20813640 | MS.gene060205:CDS | 55.0% | |
| AGGCCTCCAAACAACTCTCC+TGG | + | chr2.3:20815303-20815322 | None:intergenic | 55.0% | |
| CAGGGAGGGATTAACTGCAG+AGG | - | chr2.3:20814295-20814314 | MS.gene060205:intron | 55.0% | |
| GACACACAAGATCCGCTTGC+AGG | - | chr2.3:20812957-20812976 | MS.gene060205:intron | 55.0% | |
| GACCCAGGAGAGTTGTTTGG+AGG | - | chr2.3:20815297-20815316 | MS.gene060205:CDS | 55.0% | |
| GGCCTCCAAACAACTCTCCT+GGG | + | chr2.3:20815302-20815321 | None:intergenic | 55.0% | |
| ! | TCATCGGATTAGGCGTGTCC+TGG | - | chr2.3:20813129-20813148 | MS.gene060205:intron | 55.0% |
| !! | CTCTGGCTTGGGAACTCTCA+AGG | - | chr2.3:20814571-20814590 | MS.gene060205:intron | 55.0% |
| AAGCAAAGGCCATGGCCCCA+TGG | - | chr2.3:20814741-20814760 | MS.gene060205:intron | 60.0% | |
| AGCAAAGGCCATGGCCCCAT+GGG | - | chr2.3:20814742-20814761 | MS.gene060205:intron | 60.0% | |
| CATGGTGGCCCTCCCACCTA+TGG | - | chr2.3:20812735-20812754 | MS.gene060205:CDS | 65.0% | |
| GAGGGCCACCATGTCTCCAC+TGG | + | chr2.3:20812728-20812747 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 20812663 | 20815374 | 20812663 | ID=MS.gene060205 |
| chr2.3 | mRNA | 20812663 | 20815374 | 20812663 | ID=MS.gene060205.t1;Parent=MS.gene060205 |
| chr2.3 | exon | 20815243 | 20815374 | 20815243 | ID=MS.gene060205.t1.exon1;Parent=MS.gene060205.t1 |
| chr2.3 | CDS | 20815243 | 20815374 | 20815243 | ID=cds.MS.gene060205.t1;Parent=MS.gene060205.t1 |
| chr2.3 | exon | 20815013 | 20815145 | 20815013 | ID=MS.gene060205.t1.exon2;Parent=MS.gene060205.t1 |
| chr2.3 | CDS | 20815013 | 20815145 | 20815013 | ID=cds.MS.gene060205.t1;Parent=MS.gene060205.t1 |
| chr2.3 | exon | 20813445 | 20813743 | 20813445 | ID=MS.gene060205.t1.exon3;Parent=MS.gene060205.t1 |
| chr2.3 | CDS | 20813445 | 20813743 | 20813445 | ID=cds.MS.gene060205.t1;Parent=MS.gene060205.t1 |
| chr2.3 | exon | 20812663 | 20812782 | 20812663 | ID=MS.gene060205.t1.exon4;Parent=MS.gene060205.t1 |
| chr2.3 | CDS | 20812663 | 20812782 | 20812663 | ID=cds.MS.gene060205.t1;Parent=MS.gene060205.t1 |
| Gene Sequence |
| Protein sequence |
