AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24640.t1 MTR_1g061050 87.989 358 43 0 1 358 1 358 0.0 657
MS.gene24640.t1 MTR_5g069055 85.754 358 51 0 1 358 1 358 0.0 641
MS.gene24640.t1 MTR_5g069050 79.609 358 58 1 1 358 42 384 0.0 582
MS.gene24640.t1 MTR_5g096670 78.492 358 76 1 1 358 1 357 0.0 573
MS.gene24640.t1 MTR_4g057670 55.966 352 150 4 8 358 53 400 1.60e-135 392
MS.gene24640.t1 MTR_4g071860 55.966 352 150 4 8 358 53 400 2.15e-135 392
MS.gene24640.t1 MTR_1g109200 53.652 356 160 4 4 358 40 391 4.18e-133 385
MS.gene24640.t1 MTR_4g071880 50.141 355 154 6 8 358 51 386 1.50e-113 335
MS.gene24640.t1 MTR_7g103920 73.958 96 0 1 112 207 11 81 1.26e-40 138
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24640.t1 AT2G36460 87.151 358 46 0 1 358 1 358 0.0 654
MS.gene24640.t1 AT3G52930 87.709 358 44 0 1 358 1 358 0.0 650
MS.gene24640.t1 AT5G03690 85.237 359 52 1 1 358 1 359 0.0 615
MS.gene24640.t1 AT5G03690 85.673 349 49 1 11 358 45 393 0.0 600
MS.gene24640.t1 AT4G26530 79.330 358 74 0 1 358 1 358 0.0 586
MS.gene24640.t1 AT4G26530 79.330 358 74 0 1 358 1 358 0.0 586
MS.gene24640.t1 AT4G26530 79.330 358 74 0 1 358 1 358 0.0 586
MS.gene24640.t1 AT4G26520 73.184 358 96 0 1 358 1 358 0.0 538
MS.gene24640.t1 AT4G26520 73.315 356 95 0 1 356 1 356 0.0 535
MS.gene24640.t1 AT4G26520 72.346 358 96 1 1 358 1 355 0.0 527
MS.gene24640.t1 AT4G26520 72.346 358 96 1 1 358 1 355 0.0 527
MS.gene24640.t1 AT2G36460 88.015 267 32 0 92 358 1 267 6.91e-179 497
MS.gene24640.t1 AT2G36460 88.015 267 32 0 92 358 1 267 6.91e-179 497
MS.gene24640.t1 AT5G03690 86.517 267 35 1 93 358 1 267 7.62e-165 461
MS.gene24640.t1 AT5G03690 86.517 267 35 1 93 358 1 267 7.62e-165 461
MS.gene24640.t1 AT4G38970 54.802 354 155 4 6 358 49 398 8.76e-134 387
MS.gene24640.t1 AT2G01140 54.830 352 154 4 8 358 44 391 2.92e-133 386
MS.gene24640.t1 AT2G21330 53.955 354 158 4 6 358 50 399 9.02e-132 382
MS.gene24640.t1 AT2G21330 51.977 354 155 5 6 358 50 389 7.89e-123 359
MS.gene24640.t1 AT4G38970 55.598 259 113 2 6 263 49 306 2.38e-96 291
MS.gene24640.t1 AT2G21330 53.668 259 118 2 6 263 50 307 5.63e-94 283

Find 121 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTCCCTTCAATTTGTTCA+TGG 0.195538 7.4:-6627925 None:intergenic
TGGGCACTTTCTTTCTCTTT+TGG 0.238095 7.4:+6627954 MS.gene24640:CDS
GATCCGTCCACTAGGATTTC+AGG 0.276408 7.4:-6627636 None:intergenic
CTCAGGAAGCATTCATTTCT+AGG 0.287182 7.4:+6628039 MS.gene24640:CDS
AGGAGTTCTTCCTGGCATTA+AGG 0.292833 7.4:+6627374 MS.gene24640:CDS
GCAACTTTGGGAACTTATAA+AGG 0.304285 7.4:+6628080 MS.gene24640:CDS
CACCAGCTTCATAGTACTTC+TGG 0.307791 7.4:-6627476 None:intergenic
GGCCTTGCAGCGAACCGTTC+CGG 0.326308 7.4:+6627833 MS.gene24640:CDS
CCTGCTGTTGTGTTCTTGTC+TGG 0.328998 7.4:+6627864 MS.gene24640:CDS
TGAGGTGACTGAACGTGTTC+TGG 0.341250 7.4:+6627680 MS.gene24640:CDS
GATGAATCAACTGGTACAAT+TGG 0.356390 7.4:+6626531 MS.gene24640:CDS
GGCTAACTCACAAGCAACTT+TGG 0.373884 7.4:+6628067 MS.gene24640:CDS
GTATATTCGGCTATAACTTC+AGG 0.378009 7.4:-6627804 None:intergenic
AAGTACCTGCAGCTGTCTTT+TGG 0.387833 7.4:-6626683 None:intergenic
TTGGGTGGTGGTTTCCCCAT+TGG 0.390053 7.4:-6627427 None:intergenic
AAGCACCAGGGGTGGTGAAT+AGG 0.392542 7.4:-6626617 None:intergenic
CAAGGCCTTAACGGTATATT+CGG 0.396094 7.4:-6627817 None:intergenic
CTCTGAGTCTCTCCATGTTA+AGG 0.403479 7.4:+6628127 MS.gene24640:CDS
AAGGAAGGAGGAGTTCTTCC+TGG 0.405511 7.4:+6627366 MS.gene24640:CDS
GGTTCGCTGCAAGGCCTTAA+CGG 0.417489 7.4:-6627826 None:intergenic
AAGCATTCATTTCTAGGTGC+AGG 0.421155 7.4:+6628045 MS.gene24640:CDS
GCTAACTCACAAGCAACTTT+GGG 0.426606 7.4:+6628068 MS.gene24640:CDS
CAGCACGCCACTTAGCAAAT+CGG 0.429319 7.4:-6627500 None:intergenic
AGGATTTCAGGCTCCACTAT+AGG 0.433980 7.4:-6627624 None:intergenic
GGAAACCACCACCCAAGGTT+TGG 0.439052 7.4:+6627434 MS.gene24640:CDS
AGTACTCTCAAGGCATGGGC+TGG 0.441574 7.4:+6627993 MS.gene24640:CDS
GCTGCTTACATTGGCAGCCC+AGG 0.446993 7.4:+6626489 MS.gene24640:CDS
GACAGCTCAGATGGCTCGTT+GGG 0.447524 7.4:-6627537 None:intergenic
AAGGGCACTGTAGAGCTTGC+TGG 0.449470 7.4:+6627402 MS.gene24640:CDS
GACATTCTCAACATTAATGC+TGG 0.457419 7.4:-6626565 None:intergenic
TTGAGAATGTCGAAACAAAC+AGG 0.460067 7.4:+6626577 MS.gene24640:CDS
ACCCAAGGTTTGGATGGGCT+TGG 0.462623 7.4:+6627444 MS.gene24640:CDS
GCGGCAAGGATACCCTTCCC+TGG 0.464998 7.4:-6626507 None:intergenic
CCAGACAAGAACACAACAGC+AGG 0.465132 7.4:-6627864 None:intergenic
TAGAGCTTGCTGGAACCAAT+GGG 0.468785 7.4:+6627412 MS.gene24640:CDS
TATAAAGGTGATTCTACCCT+TGG 0.470420 7.4:+6628095 MS.gene24640:CDS
AGCACGCCACTTAGCAAATC+GGG 0.476929 7.4:-6627499 None:intergenic
ACCTTTCGTAGAGTTGTTGA+AGG 0.478093 7.4:+6627347 MS.gene24640:CDS
ACCACCACCCAAGGTTTGGA+TGG 0.478747 7.4:+6627438 MS.gene24640:CDS
CCCATCCAAACCTTGGGTGG+TGG 0.479234 7.4:-6627439 None:intergenic
TGGTACAATTGGGAAGCGTT+TGG 0.480915 7.4:+6626542 MS.gene24640:CDS
GACCAAGCCCATCCAAACCT+TGG 0.485707 7.4:-6627446 None:intergenic
ACCAAGCCCATCCAAACCTT+GGG 0.487111 7.4:-6627445 None:intergenic
CAATGCCATGAACAAATTGA+AGG 0.489466 7.4:+6627920 MS.gene24640:CDS
TGGCGTGCTGTCCTCAAGAT+TGG 0.490006 7.4:+6627513 MS.gene24640:CDS
CAGGCTCCACTATAGGAACT+AGG 0.495272 7.4:-6627617 None:intergenic
ATGAATCAACTGGTACAATT+GGG 0.496848 7.4:+6626532 MS.gene24640:CDS
AGCCGGAACGGTTCGCTGCA+AGG 0.504681 7.4:-6627835 None:intergenic
GCTGTTGTGTTCTTGTCTGG+TGG 0.505060 7.4:+6627867 MS.gene24640:CDS
TATAGCCGAATATACCGTTA+AGG 0.505464 7.4:+6627812 MS.gene24640:CDS
GTAGAGTTGTTGAAGGAAGG+AGG 0.506426 7.4:+6627354 MS.gene24640:CDS
GTAGAGCTTGCTGGAACCAA+TGG 0.507341 7.4:+6627411 MS.gene24640:CDS
TATATTCGGCTATAACTTCA+GGG 0.510081 7.4:-6627803 None:intergenic
CTATACCAAAAGACAGCTGC+AGG 0.511625 7.4:+6626678 MS.gene24640:CDS
GTACTCTCAAGGCATGGGCT+GGG 0.512522 7.4:+6627994 MS.gene24640:CDS
GGGTGGTGAATAGGAGTTCA+CGG 0.514483 7.4:-6626608 None:intergenic
GAATGGCCTAGTTCCTATAG+TGG 0.514663 7.4:+6627611 MS.gene24640:CDS
TCTATCCACGAGAACGCCTA+TGG 0.515668 7.4:+6627558 MS.gene24640:CDS
CCCTTGTCAACCTTAATGCC+AGG 0.519001 7.4:-6627384 None:intergenic
CCCCGGTTCAGATTCTCAAA+AGG 0.519538 7.4:+6627776 MS.gene24640:CDS
TCAATTTGTTCATGGCATTG+AGG 0.520997 7.4:-6627917 None:intergenic
CTGAGGCAGTCAAAAGCACC+AGG 0.521879 7.4:-6626630 None:intergenic
CTTGCCGCTGATGAATCAAC+TGG 0.521919 7.4:+6626522 MS.gene24640:CDS
ATTGCCAATGCTGCTTACAT+TGG 0.521934 7.4:+6626480 MS.gene24640:CDS
TTCGTAGAGTTGTTGAAGGA+AGG 0.523483 7.4:+6627351 MS.gene24640:CDS
GCTGCCAATGTAAGCAGCAT+TGG 0.524935 7.4:-6626484 None:intergenic
AGCAGAGTACTCTCAAGGCA+TGG 0.525031 7.4:+6627988 MS.gene24640:CDS
CGGCAAGGATACCCTTCCCT+GGG 0.530056 7.4:-6626506 None:intergenic
TGAAAACATTAAGAAGGCTC+AGG 0.537239 7.4:+6628022 MS.gene24640:CDS
TCCTTCAACAACTCTACGAA+AGG 0.538329 7.4:-6627348 None:intergenic
TCCTGGCATTAAGGTTGACA+AGG 0.539046 7.4:+6627383 MS.gene24640:CDS
TGCCAGAAGTACTATGAAGC+TGG 0.539839 7.4:+6627474 MS.gene24640:CDS
GCTGTCATATGCCAAGAGAA+TGG 0.540178 7.4:+6627594 MS.gene24640:CDS
TTACATTGGCAGCCCAGGGA+AGG 0.541012 7.4:+6626494 MS.gene24640:CDS
ACAACAGCAGGAACTGCAGC+CGG 0.552294 7.4:-6627852 None:intergenic
TAGGAACTAGGCCATTCTCT+TGG 0.555043 7.4:-6627605 None:intergenic
TGGTGGACAGAGTGAGGAGG+AGG 0.559419 7.4:+6627884 MS.gene24640:CDS
GAAAGATGAAAACATTAAGA+AGG 0.560338 7.4:+6628016 MS.gene24640:CDS
AGCAGGAACTGCAGCCGGAA+CGG 0.563737 7.4:-6627847 None:intergenic
GAACTCCTATTCACCACCCC+TGG 0.564552 7.4:+6626612 MS.gene24640:CDS
CTAGACCATAGGCGTTCTCG+TGG 0.564863 7.4:-6627563 None:intergenic
AGCATTCATTTCTAGGTGCA+GGG 0.565780 7.4:+6628046 MS.gene24640:CDS
TACATTGGCAGCCCAGGGAA+GGG 0.567931 7.4:+6626495 MS.gene24640:CDS
AGACAGCTCAGATGGCTCGT+TGG 0.568425 7.4:-6627538 None:intergenic
CCACCACCCAAGGTTTGGAT+GGG 0.574869 7.4:+6627439 MS.gene24640:CDS
CTGCTTACATTGGCAGCCCA+GGG 0.576119 7.4:+6626490 MS.gene24640:CDS
AAGCCCAACATGGTAACCCC+CGG 0.580471 7.4:+6627759 MS.gene24640:CDS
GCAGAGTACTCTCAAGGCAT+GGG 0.580912 7.4:+6627989 MS.gene24640:CDS
CTGGTGCCCGATTTGCTAAG+TGG 0.581290 7.4:+6627493 MS.gene24640:CDS
AGTATTTGTAATCCTTAACA+TGG 0.585318 7.4:-6628139 None:intergenic
AATGCCATGAACAAATTGAA+GGG 0.590609 7.4:+6627921 MS.gene24640:CDS
TCGTGGATAGACAGCTCAGA+TGG 0.594167 7.4:-6627546 None:intergenic
TGTCATGAGATCCGTCCACT+AGG 0.594938 7.4:-6627644 None:intergenic
AATGGGGAAACCACCACCCA+AGG 0.600888 7.4:+6627429 MS.gene24640:CDS
AATTGAAGGGAAAGAAGCCG+TGG 0.606270 7.4:+6627934 MS.gene24640:CDS
CTTGTCTGGTGGACAGAGTG+AGG 0.610600 7.4:+6627878 MS.gene24640:CDS
AAGCCCATCCAAACCTTGGG+TGG 0.615549 7.4:-6627442 None:intergenic
GCTCGTTGGGACCAATCTTG+AGG 0.620621 7.4:-6627524 None:intergenic
GAGCCTGAAATCCTAGTGGA+CGG 0.627594 7.4:+6627633 MS.gene24640:CDS
CAGTTGATTCATCAGCGGCA+AGG 0.629317 7.4:-6626521 None:intergenic
GCAGTCAAAAGCACCAGGGG+TGG 0.632487 7.4:-6626625 None:intergenic
CTCAGAGGCACCATCACCAA+GGG 0.635565 7.4:-6628111 None:intergenic
GGTGATTCTACCCTTGGTGA+TGG 0.637135 7.4:+6628101 MS.gene24640:CDS
ACTTCAGCAGAGTACTCTCA+AGG 0.637395 7.4:+6627983 MS.gene24640:CDS
AAAGAGAAAGAAAGTGCCCA+CGG 0.650023 7.4:-6627951 None:intergenic
GATCATCATGTTCTACTCGA+AGG 0.653456 7.4:+6627726 MS.gene24640:CDS
CCTGGCATTAAGGTTGACAA+GGG 0.666501 7.4:+6627384 MS.gene24640:CDS
GTCTGGTGGACAGAGTGAGG+AGG 0.667820 7.4:+6627881 MS.gene24640:CDS
AGTGGAGCCTGAAATCCTAG+TGG 0.667846 7.4:+6627629 MS.gene24640:CDS
ACTCAGAGGCACCATCACCA+AGG 0.668916 7.4:-6628112 None:intergenic
GAGGCAGTCAAAAGCACCAG+GGG 0.673021 7.4:-6626628 None:intergenic
TGTACCAGTTGATTCATCAG+CGG 0.678605 7.4:-6626526 None:intergenic
CTTAACATGGAGAGACTCAG+AGG 0.681234 7.4:-6628126 None:intergenic
ATTGAAGGGAAAGAAGCCGT+GGG 0.685142 7.4:+6627935 MS.gene24640:CDS
ATATTCGGCTATAACTTCAG+GGG 0.697227 7.4:-6627802 None:intergenic
TTCTTCAAGAGCAAATACCA+AGG 0.700911 7.4:+6625777 MS.gene24640:CDS
AGCATAGCGAGCTAGACCAT+AGG 0.708256 7.4:-6627574 None:intergenic
TGAGGCAGTCAAAAGCACCA+GGG 0.711166 7.4:-6626629 None:intergenic
TGACATCAACAAGTGTGCTG+AGG 0.731985 7.4:+6627662 MS.gene24640:CDS
AGAGCTTGCTGGAACCAATG+GGG 0.738968 7.4:+6627413 MS.gene24640:CDS
CATATAAAATCACACCACTG+AGG 0.751130 7.4:-6626647 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTATTAATAA+TGG + chr7.4:6626059-6626078 MS.gene24640:intron 0.0%
!! CATTTAAAAAAATAAAGTTT+AGG - chr7.4:6627310-6627329 None:intergenic 10.0%
!! TAACATATATGAAAATAGTT+TGG + chr7.4:6627083-6627102 MS.gene24640:intron 15.0%
!!! TTTTAAATGTAATTAATTGC+AGG + chr7.4:6627321-6627340 MS.gene24640:intron 15.0%
!! TCTCAAATTATTATCTGTTT+CGG - chr7.4:6626192-6626211 None:intergenic 20.0%
!! TCTTTCTAACATCATAAATA+AGG - chr7.4:6626714-6626733 None:intergenic 20.0%
!!! AGATCAAGCAATTTATTTTA+GGG - chr7.4:6626106-6626125 None:intergenic 20.0%
!!! GTAAGATTTTAATCTTGTTT+TGG + chr7.4:6626324-6626343 MS.gene24640:intron 20.0%
!!! TAGATCAAGCAATTTATTTT+AGG - chr7.4:6626107-6626126 None:intergenic 20.0%
! AAATAAATTGCTTGATCTAC+CGG + chr7.4:6626108-6626127 MS.gene24640:intron 25.0%
! AAATAACCATTCGCATTAAA+AGG - chr7.4:6625964-6625983 None:intergenic 25.0%
! AATAACCATTCGCATTAAAA+GGG - chr7.4:6625963-6625982 None:intergenic 25.0%
! AGACATAAACTGAAAAACAA+GGG - chr7.4:6626842-6626861 None:intergenic 25.0%
! AGATTAACAAACTGCTATTA+CGG + chr7.4:6626398-6626417 MS.gene24640:intron 25.0%
! AGTATTTGTAATCCTTAACA+TGG - chr7.4:6628142-6628161 None:intergenic 25.0%
! ATGTTAAGTATTTCCTTACT+AGG + chr7.4:6626749-6626768 MS.gene24640:intron 25.0%
! CATATGTCAATACATAAGAA+AGG - chr7.4:6626801-6626820 None:intergenic 25.0%
! GAAAGATGAAAACATTAAGA+AGG + chr7.4:6628016-6628035 MS.gene24640:CDS 25.0%
! TAGACATAAACTGAAAAACA+AGG - chr7.4:6626843-6626862 None:intergenic 25.0%
! TCATTAGTTATTAGAACTTC+TGG - chr7.4:6627053-6627072 None:intergenic 25.0%
! TGAGAAAATGATATAATCTG+AGG + chr7.4:6626207-6626226 MS.gene24640:intron 25.0%
! TTAAGAGACAATAATAGCAT+CGG - chr7.4:6625843-6625862 None:intergenic 25.0%
!! AAAGTCTGAAGCATAATAAA+AGG - chr7.4:6625996-6626015 None:intergenic 25.0%
!! AAGTCTGAAGCATAATAAAA+GGG - chr7.4:6625995-6626014 None:intergenic 25.0%
!!! CATATTTTTTCAGTCTTCAT+CGG + chr7.4:6627282-6627301 MS.gene24640:intron 25.0%
!!! TCTTATTTTGTCATATTTGC+AGG - chr7.4:6626286-6626305 None:intergenic 25.0%
AATGCCATGAACAAATTGAA+GGG + chr7.4:6627921-6627940 MS.gene24640:CDS 30.0%
ATGAATCAACTGGTACAATT+GGG + chr7.4:6626532-6626551 MS.gene24640:CDS 30.0%
CAGTTTATGTCTAATGTTCT+TGG + chr7.4:6626850-6626869 MS.gene24640:intron 30.0%
CGATGAAGACTGAAAAAATA+TGG - chr7.4:6627284-6627303 None:intergenic 30.0%
CGGACATTATTAACAATGAA+AGG - chr7.4:6625823-6625842 None:intergenic 30.0%
GAAATAAGTTCAGCAACTAA+TGG - chr7.4:6627031-6627050 None:intergenic 30.0%
TATATTCGGCTATAACTTCA+GGG - chr7.4:6627806-6627825 None:intergenic 30.0%
!!! AGTTATACGCTGTTTTGAAA+AGG - chr7.4:6627112-6627131 None:intergenic 30.0%
!!! TTTCTTGTTTTCGTCGATTT+TGG + chr7.4:6625907-6625926 MS.gene24640:intron 30.0%
!!! TTTTTATCCTTTAGAGCTTC+TGG - chr7.4:6627190-6627209 None:intergenic 30.0%
AAGCTATCATAGAGAGACTA+TGG - chr7.4:6626957-6626976 None:intergenic 35.0%
ATATTCGGCTATAACTTCAG+GGG - chr7.4:6627805-6627824 None:intergenic 35.0%
CAATGCCATGAACAAATTGA+AGG + chr7.4:6627920-6627939 MS.gene24640:CDS 35.0%
CATATAAAATCACACCACTG+AGG - chr7.4:6626650-6626669 None:intergenic 35.0%
GACATTCTCAACATTAATGC+TGG - chr7.4:6626568-6626587 None:intergenic 35.0%
GACGAAAACAAGAAAGATAG+AGG - chr7.4:6625902-6625921 None:intergenic 35.0%
GAGTAAATGAGAGAATACCT+TGG - chr7.4:6625797-6625816 None:intergenic 35.0%
GATGAATCAACTGGTACAAT+TGG + chr7.4:6626531-6626550 MS.gene24640:CDS 35.0%
GTATATTCGGCTATAACTTC+AGG - chr7.4:6627807-6627826 None:intergenic 35.0%
TATAAAGGTGATTCTACCCT+TGG + chr7.4:6628095-6628114 MS.gene24640:CDS 35.0%
TATAGCCGAATATACCGTTA+AGG + chr7.4:6627812-6627831 MS.gene24640:CDS 35.0%
TCCAGATCAAAAGTCATGAT+AGG - chr7.4:6626360-6626379 None:intergenic 35.0%
TGAAAACATTAAGAAGGCTC+AGG + chr7.4:6628022-6628041 MS.gene24640:CDS 35.0%
TTCTTCAAGAGCAAATACCA+AGG + chr7.4:6625777-6625796 MS.gene24640:CDS 35.0%
TTGAGAATGTCGAAACAAAC+AGG + chr7.4:6626577-6626596 MS.gene24640:CDS 35.0%
! CAGTGGTGTGATTTTATATG+AGG + chr7.4:6626650-6626669 MS.gene24640:CDS 35.0%
! CTTATTTCCAGAAGCTCTAA+AGG + chr7.4:6627180-6627199 MS.gene24640:intron 35.0%
! CTTTCCCTTCAATTTGTTCA+TGG - chr7.4:6627928-6627947 None:intergenic 35.0%
! GCAACTTTGGGAACTTATAA+AGG + chr7.4:6628080-6628099 MS.gene24640:CDS 35.0%
! TATTATCTGTTTCGGTGTGT+CGG - chr7.4:6626184-6626203 None:intergenic 35.0%
! TCAATTTGTTCATGGCATTG+AGG - chr7.4:6627920-6627939 None:intergenic 35.0%
! TTGATCCCTTTTAATGCGAA+TGG + chr7.4:6625955-6625974 MS.gene24640:intron 35.0%
!! AACCTTTTGAGAATCTGAAC+CGG - chr7.4:6627781-6627800 None:intergenic 35.0%
!! TTGCTCATTGATTCCTAGTA+AGG - chr7.4:6626765-6626784 None:intergenic 35.0%
!!! ACTTTATTTTCAGTCGCCAT+TGG + chr7.4:6627149-6627168 MS.gene24640:intron 35.0%
ACCTTTCGTAGAGTTGTTGA+AGG + chr7.4:6627347-6627366 MS.gene24640:CDS 40.0%
ACTCCAGAACACATACAGAT+CGG - chr7.4:6626039-6626058 None:intergenic 40.0%
ATAATCCCAACCTACAGGTA+TGG - chr7.4:6626262-6626281 None:intergenic 40.0%
ATACCGATCTGTATGTGTTC+TGG + chr7.4:6626033-6626052 MS.gene24640:intron 40.0%
ATATTGAGCCTACGAAGACA+CGG + chr7.4:6626155-6626174 MS.gene24640:intron 40.0%
ATCAGCTCAACTATGAAGCA+CGG - chr7.4:6626238-6626257 None:intergenic 40.0%
CAAGGCCTTAACGGTATATT+CGG - chr7.4:6627820-6627839 None:intergenic 40.0%
CAGACTTTCTCGAATTGTCA+TGG + chr7.4:6625869-6625888 MS.gene24640:intron 40.0%
GATCATCATGTTCTACTCGA+AGG + chr7.4:6627726-6627745 MS.gene24640:CDS 40.0%
GCTAACTCACAAGCAACTTT+GGG + chr7.4:6628068-6628087 MS.gene24640:CDS 40.0%
TAACAAACTGCTATTACGGC+AGG + chr7.4:6626402-6626421 MS.gene24640:intron 40.0%
TCCTTCAACAACTCTACGAA+AGG - chr7.4:6627351-6627370 None:intergenic 40.0%
TGATACCATACCTGTAGGTT+GGG + chr7.4:6626254-6626273 MS.gene24640:intron 40.0%
TTCGTAGAGTTGTTGAAGGA+AGG + chr7.4:6627351-6627370 MS.gene24640:CDS 40.0%
! AAACAAGAGCACAAGCATTC+CGG - chr7.4:6626130-6626149 None:intergenic 40.0%
! AAGCATTCATTTCTAGGTGC+AGG + chr7.4:6628045-6628064 MS.gene24640:CDS 40.0%
! AGAGCTTCTGGAAATAAGCT+CGG - chr7.4:6627178-6627197 None:intergenic 40.0%
! AGCATTCATTTCTAGGTGCA+GGG + chr7.4:6628046-6628065 MS.gene24640:CDS 40.0%
! ATTGCCAATGCTGCTTACAT+TGG + chr7.4:6626480-6626499 MS.gene24640:CDS 40.0%
! GCCTATCATGACTTTTGATC+TGG + chr7.4:6626356-6626375 MS.gene24640:intron 40.0%
! TGGGCACTTTCTTTCTCTTT+TGG + chr7.4:6627954-6627973 MS.gene24640:CDS 40.0%
! TGTACCAGTTGATTCATCAG+CGG - chr7.4:6626529-6626548 None:intergenic 40.0%
!! AAAGAGAAAGAAAGTGCCCA+CGG - chr7.4:6627954-6627973 None:intergenic 40.0%
!! ACCTTTTGAGAATCTGAACC+GGG - chr7.4:6627780-6627799 None:intergenic 40.0%
!! CTCAGGAAGCATTCATTTCT+AGG + chr7.4:6628039-6628058 MS.gene24640:CDS 40.0%
!!! AACTCTTTTGAAGCCCAACA+TGG + chr7.4:6627749-6627768 MS.gene24640:CDS 40.0%
AATTGAAGGGAAAGAAGCCG+TGG + chr7.4:6627934-6627953 MS.gene24640:CDS 45.0%
AGGAGTTCTTCCTGGCATTA+AGG + chr7.4:6627374-6627393 MS.gene24640:CDS 45.0%
AGGATTTCAGGCTCCACTAT+AGG - chr7.4:6627627-6627646 None:intergenic 45.0%
ATTGAAGGGAAAGAAGCCGT+GGG + chr7.4:6627935-6627954 MS.gene24640:CDS 45.0%
CACCAGCTTCATAGTACTTC+TGG - chr7.4:6627479-6627498 None:intergenic 45.0%
CCTGGCATTAAGGTTGACAA+GGG + chr7.4:6627384-6627403 MS.gene24640:CDS 45.0%
CTATACCAAAAGACAGCTGC+AGG + chr7.4:6626678-6626697 MS.gene24640:CDS 45.0%
CTCTGAGTCTCTCCATGTTA+AGG + chr7.4:6628127-6628146 MS.gene24640:CDS 45.0%
CTGATACCATACCTGTAGGT+TGG + chr7.4:6626253-6626272 MS.gene24640:intron 45.0%
CTTAACATGGAGAGACTCAG+AGG - chr7.4:6628129-6628148 None:intergenic 45.0%
GAAATAAGCTCGGCAACCAA+TGG - chr7.4:6627168-6627187 None:intergenic 45.0%
GAATGGCCTAGTTCCTATAG+TGG + chr7.4:6627611-6627630 MS.gene24640:CDS 45.0%
GCTGTCATATGCCAAGAGAA+TGG + chr7.4:6627594-6627613 MS.gene24640:CDS 45.0%
GGCTAACTCACAAGCAACTT+TGG + chr7.4:6628067-6628086 MS.gene24640:CDS 45.0%
GTAGAGTTGTTGAAGGAAGG+AGG + chr7.4:6627354-6627373 MS.gene24640:CDS 45.0%
TAGGAACTAGGCCATTCTCT+TGG - chr7.4:6627608-6627627 None:intergenic 45.0%
TCCTGGCATTAAGGTTGACA+AGG + chr7.4:6627383-6627402 MS.gene24640:CDS 45.0%
TGACATCAACAAGTGTGCTG+AGG + chr7.4:6627662-6627681 MS.gene24640:CDS 45.0%
TGAGCTGATACCATACCTGT+AGG + chr7.4:6626249-6626268 MS.gene24640:intron 45.0%
! AAGTACCTGCAGCTGTCTTT+TGG - chr7.4:6626686-6626705 None:intergenic 45.0%
! ACTTCAGCAGAGTACTCTCA+AGG + chr7.4:6627983-6628002 MS.gene24640:CDS 45.0%
!! CCTTTTGAGAATCTGAACCG+GGG - chr7.4:6627779-6627798 None:intergenic 45.0%
!! CTTTTGAGAATCTGAACCGG+GGG - chr7.4:6627778-6627797 None:intergenic 45.0%
!! TAGAGCTTGCTGGAACCAAT+GGG + chr7.4:6627412-6627431 MS.gene24640:CDS 45.0%
!! TGCCAGAAGTACTATGAAGC+TGG + chr7.4:6627474-6627493 MS.gene24640:CDS 45.0%
!! TGGTACAATTGGGAAGCGTT+TGG + chr7.4:6626542-6626561 MS.gene24640:CDS 45.0%
AAGGAAGGAGGAGTTCTTCC+TGG + chr7.4:6627366-6627385 MS.gene24640:CDS 50.0%
ACCAAGCCCATCCAAACCTT+GGG - chr7.4:6627448-6627467 None:intergenic 50.0%
AGCACGCCACTTAGCAAATC+GGG - chr7.4:6627502-6627521 None:intergenic 50.0%
AGCATAGCGAGCTAGACCAT+AGG - chr7.4:6627577-6627596 None:intergenic 50.0%
AGTGGAGCCTGAAATCCTAG+TGG + chr7.4:6627629-6627648 MS.gene24640:CDS 50.0%
CAGCACGCCACTTAGCAAAT+CGG - chr7.4:6627503-6627522 None:intergenic 50.0%
CAGGCATAATCCCAACCTAC+AGG - chr7.4:6626267-6626286 None:intergenic 50.0%
CAGGCTCCACTATAGGAACT+AGG - chr7.4:6627620-6627639 None:intergenic 50.0%
CCAGACAAGAACACAACAGC+AGG - chr7.4:6627867-6627886 None:intergenic 50.0%
CCCCGGTTCAGATTCTCAAA+AGG + chr7.4:6627776-6627795 MS.gene24640:CDS 50.0%
CCCTTGTCAACCTTAATGCC+AGG - chr7.4:6627387-6627406 None:intergenic 50.0%
CCTGCTGTTGTGTTCTTGTC+TGG + chr7.4:6627864-6627883 MS.gene24640:CDS 50.0%
CTTGCCGCTGATGAATCAAC+TGG + chr7.4:6626522-6626541 MS.gene24640:CDS 50.0%
GAGCCTGAAATCCTAGTGGA+CGG + chr7.4:6627633-6627652 MS.gene24640:CDS 50.0%
GATCCGTCCACTAGGATTTC+AGG - chr7.4:6627639-6627658 None:intergenic 50.0%
GCTGCCAATGTAAGCAGCAT+TGG - chr7.4:6626487-6626506 None:intergenic 50.0%
GCTGTTGTGTTCTTGTCTGG+TGG + chr7.4:6627867-6627886 MS.gene24640:CDS 50.0%
GGGTGGTGAATAGGAGTTCA+CGG - chr7.4:6626611-6626630 None:intergenic 50.0%
GGTGATTCTACCCTTGGTGA+TGG + chr7.4:6628101-6628120 MS.gene24640:CDS 50.0%
TCGTGGATAGACAGCTCAGA+TGG - chr7.4:6627549-6627568 None:intergenic 50.0%
TCTATCCACGAGAACGCCTA+TGG + chr7.4:6627558-6627577 MS.gene24640:CDS 50.0%
TGAGGTGACTGAACGTGTTC+TGG + chr7.4:6627680-6627699 MS.gene24640:CDS 50.0%
TGTCATGAGATCCGTCCACT+AGG - chr7.4:6627647-6627666 None:intergenic 50.0%
! AGCAGAGTACTCTCAAGGCA+TGG + chr7.4:6627988-6628007 MS.gene24640:CDS 50.0%
! CAGTTGATTCATCAGCGGCA+AGG - chr7.4:6626524-6626543 None:intergenic 50.0%
! GCAGAGTACTCTCAAGGCAT+GGG + chr7.4:6627989-6628008 MS.gene24640:CDS 50.0%
!! AGAGCTTGCTGGAACCAATG+GGG + chr7.4:6627413-6627432 MS.gene24640:CDS 50.0%
!! GTAGAGCTTGCTGGAACCAA+TGG + chr7.4:6627411-6627430 MS.gene24640:CDS 50.0%
!! TGAGGCAGTCAAAAGCACCA+GGG - chr7.4:6626632-6626651 None:intergenic 50.0%
AAGCACCAGGGGTGGTGAAT+AGG - chr7.4:6626620-6626639 None:intergenic 55.0%
AAGCCCAACATGGTAACCCC+CGG + chr7.4:6627759-6627778 MS.gene24640:CDS 55.0%
AAGCCCATCCAAACCTTGGG+TGG - chr7.4:6627445-6627464 None:intergenic 55.0%
AATGGGGAAACCACCACCCA+AGG + chr7.4:6627429-6627448 MS.gene24640:CDS 55.0%
ACAACAGCAGGAACTGCAGC+CGG - chr7.4:6627855-6627874 None:intergenic 55.0%
ACCACCACCCAAGGTTTGGA+TGG + chr7.4:6627438-6627457 MS.gene24640:CDS 55.0%
AGACAGCTCAGATGGCTCGT+TGG - chr7.4:6627541-6627560 None:intergenic 55.0%
AGTACTCTCAAGGCATGGGC+TGG + chr7.4:6627993-6628012 MS.gene24640:CDS 55.0%
CCACCACCCAAGGTTTGGAT+GGG + chr7.4:6627439-6627458 MS.gene24640:CDS 55.0%
CTAGACCATAGGCGTTCTCG+TGG - chr7.4:6627566-6627585 None:intergenic 55.0%
CTGCTTACATTGGCAGCCCA+GGG + chr7.4:6626490-6626509 MS.gene24640:CDS 55.0%
GAACCGGGGGTTACCATGTT+GGG - chr7.4:6627765-6627784 None:intergenic 55.0%
GAACTCCTATTCACCACCCC+TGG + chr7.4:6626612-6626631 MS.gene24640:CDS 55.0%
GACAGCTCAGATGGCTCGTT+GGG - chr7.4:6627540-6627559 None:intergenic 55.0%
GACCAAGCCCATCCAAACCT+TGG - chr7.4:6627449-6627468 None:intergenic 55.0%
GCTCGTTGGGACCAATCTTG+AGG - chr7.4:6627527-6627546 None:intergenic 55.0%
GGAAACCACCACCCAAGGTT+TGG + chr7.4:6627434-6627453 MS.gene24640:CDS 55.0%
GGTTCGCTGCAAGGCCTTAA+CGG - chr7.4:6627829-6627848 None:intergenic 55.0%
GTACTCTCAAGGCATGGGCT+GGG + chr7.4:6627994-6628013 MS.gene24640:CDS 55.0%
TACATTGGCAGCCCAGGGAA+GGG + chr7.4:6626495-6626514 MS.gene24640:CDS 55.0%
TGAACCGGGGGTTACCATGT+TGG - chr7.4:6627766-6627785 None:intergenic 55.0%
TGGCGTGCTGTCCTCAAGAT+TGG + chr7.4:6627513-6627532 MS.gene24640:CDS 55.0%
TTACATTGGCAGCCCAGGGA+AGG + chr7.4:6626494-6626513 MS.gene24640:CDS 55.0%
! ACCCAAGGTTTGGATGGGCT+TGG + chr7.4:6627444-6627463 MS.gene24640:CDS 55.0%
! CTTGTCTGGTGGACAGAGTG+AGG + chr7.4:6627878-6627897 MS.gene24640:CDS 55.0%
! TTGGGTGGTGGTTTCCCCAT+TGG - chr7.4:6627430-6627449 None:intergenic 55.0%
!! AAGGGCACTGTAGAGCTTGC+TGG + chr7.4:6627402-6627421 MS.gene24640:CDS 55.0%
!! ACTCAGAGGCACCATCACCA+AGG - chr7.4:6628115-6628134 None:intergenic 55.0%
!! CTCAGAGGCACCATCACCAA+GGG - chr7.4:6628114-6628133 None:intergenic 55.0%
!! CTGAGGCAGTCAAAAGCACC+AGG - chr7.4:6626633-6626652 None:intergenic 55.0%
!! CTGGTGCCCGATTTGCTAAG+TGG + chr7.4:6627493-6627512 MS.gene24640:CDS 55.0%
!! GAGGCAGTCAAAAGCACCAG+GGG - chr7.4:6626631-6626650 None:intergenic 55.0%
!! GGTGCTTTTGACTGCCTCAG+TGG + chr7.4:6626633-6626652 MS.gene24640:CDS 55.0%
AGCAGGAACTGCAGCCGGAA+CGG - chr7.4:6627850-6627869 None:intergenic 60.0%
CCCATCCAAACCTTGGGTGG+TGG - chr7.4:6627442-6627461 None:intergenic 60.0%
CGGCAAGGATACCCTTCCCT+GGG - chr7.4:6626509-6626528 None:intergenic 60.0%
GCTGCTTACATTGGCAGCCC+AGG + chr7.4:6626489-6626508 MS.gene24640:CDS 60.0%
! GTCGGTGTCCGTGTCTTCGT+AGG - chr7.4:6626166-6626185 None:intergenic 60.0%
! GTCTGGTGGACAGAGTGAGG+AGG + chr7.4:6627881-6627900 MS.gene24640:CDS 60.0%
! TGGTGGACAGAGTGAGGAGG+AGG + chr7.4:6627884-6627903 MS.gene24640:CDS 60.0%
!! GCAGTCAAAAGCACCAGGGG+TGG - chr7.4:6626628-6626647 None:intergenic 60.0%
AGCCGGAACGGTTCGCTGCA+AGG - chr7.4:6627838-6627857 None:intergenic 65.0%
GCGGCAAGGATACCCTTCCC+TGG - chr7.4:6626510-6626529 None:intergenic 65.0%
GGCCTTGCAGCGAACCGTTC+CGG + chr7.4:6627833-6627852 MS.gene24640:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 6625771 6628163 6625771 ID=MS.gene24640
chr7.4 mRNA 6625771 6628163 6625771 ID=MS.gene24640.t1;Parent=MS.gene24640
chr7.4 exon 6625771 6625798 6625771 ID=MS.gene24640.t1.exon1;Parent=MS.gene24640.t1
chr7.4 CDS 6625771 6625798 6625771 ID=cds.MS.gene24640.t1;Parent=MS.gene24640.t1
chr7.4 exon 6626472 6626699 6626472 ID=MS.gene24640.t1.exon2;Parent=MS.gene24640.t1
chr7.4 CDS 6626472 6626699 6626472 ID=cds.MS.gene24640.t1;Parent=MS.gene24640.t1
chr7.4 exon 6627343 6628163 6627343 ID=MS.gene24640.t1.exon3;Parent=MS.gene24640.t1
chr7.4 CDS 6627343 6628163 6627343 ID=cds.MS.gene24640.t1;Parent=MS.gene24640.t1
Gene Sequence

>MS.gene24640

ATGTCTTTCTTCAAGAGCAAATACCAAGGTATTCTCTCATTTACTCTTGCCTTTCATTGTTAATAATGTCCGATGCTATTATTGTCTCTTAATCTTGTCAGACTTTCTCGAATTGTCATGGATTTTTGCCTCTATCTTTCTTGTTTTCGTCGATTTTGGTTGAACAATTATGCTGTATCAAAATTTGATCCCTTTTAATGCGAATGGTTATTTTATTATAACCCTTTTATTATGCTTCAGACTTTGTGATCTTAAGATTTTGATACCGATCTGTATGTGTTCTGGAGTTTTTTTTTTTTTATTAATAATGGAATACTTTTTGATTCTGTGTGCCCTAAAATAAATTGCTTGATCTACCGGAATGCTTGTGCTCTTGTTTTCATGATATTGAGCCTACGAAGACACGGACACCGACACACCGAAACAGATAATAATTTGAGAAAATGATATAATCTGAGGAGTGTCCGTGCTTCATAGTTGAGCTGATACCATACCTGTAGGTTGGGATTATGCCTGCAAATATGACAAAATAAGAACACTTTATTTGTATTATGTAAGATTTTAATCTTGTTTTGGTTTTGTGATGCCTATCATGACTTTTGATCTGGATTGAAATAAAATTATTAGAGATTAACAAACTGCTATTACGGCAGGATTGAAAAGATATGTAATCTACTAGTTAATGTGCTGATGTATTGCAGATGAACTCATTGCCAATGCTGCTTACATTGGCAGCCCAGGGAAGGGTATCCTTGCCGCTGATGAATCAACTGGTACAATTGGGAAGCGTTTGGCCAGCATTAATGTTGAGAATGTCGAAACAAACAGGCGTGCTCTCCGTGAACTCCTATTCACCACCCCTGGTGCTTTTGACTGCCTCAGTGGTGTGATTTTATATGAGGAAACTCTATACCAAAAGACAGCTGCAGGTACTTATGCTCCTTATTTATGATGTTAGAAAGATATATTTTGCAGTACATGTTAAGTATTTCCTTACTAGGAATCAATGAGCAAAATCTTACTTAAACCTTTCTTATGTATTGACATATGTTCTTAGATATAACTATTCCCTTGTTTTTCAGTTTATGTCTAATGTTCTTGGATTGACTTCTTTGAGCTTATCTAGTCACGTAAGTATTTGTGAGACTGTTAAGAGAGTTTATGATATAAGCTTATGACATATCCATAGTCTCTCTATGATAGCTTTTAAAATCAACATATAACTTATATAAAACAAATTTACTTTATTTTAAGTTGCCATTAGTTGCTGAACTTATTTCCAGAAGTTCTAATAACTAATGAAAACAACTTATAACATATATGAAAATAGTTTGGATACCTTTTCAAAACAGCGTATAACTTATATAAAAACAAATTTACTTTATTTTCAGTCGCCATTGGTTGCCGAGCTTATTTCCAGAAGCTCTAAAGGATAAAAAATGAAAACAACTTATAACTTATATGAAAACAATTTGACTTTAATTTATATTTTGTTATAACTTTAATCATGCCATATTTTTTCAGTCTTCATCGGCTCCTAAACTTTATTTTTTTAAATGTAATTAATTGCAGGAAAACCTTTCGTAGAGTTGTTGAAGGAAGGAGGAGTTCTTCCTGGCATTAAGGTTGACAAGGGCACTGTAGAGCTTGCTGGAACCAATGGGGAAACCACCACCCAAGGTTTGGATGGGCTTGGTCAGCGTTGCCAGAAGTACTATGAAGCTGGTGCCCGATTTGCTAAGTGGCGTGCTGTCCTCAAGATTGGTCCCAACGAGCCATCTGAGCTGTCTATCCACGAGAACGCCTATGGTCTAGCTCGCTATGCTGTCATATGCCAAGAGAATGGCCTAGTTCCTATAGTGGAGCCTGAAATCCTAGTGGACGGATCTCATGACATCAACAAGTGTGCTGAGGTGACTGAACGTGTTCTGGCTGCGTGCTACAAAGCTCTAAGTGATCATCATGTTCTACTCGAAGGAACTCTTTTGAAGCCCAACATGGTAACCCCCGGTTCAGATTCTCAAAAGGTTGCCCCTGAAGTTATAGCCGAATATACCGTTAAGGCCTTGCAGCGAACCGTTCCGGCTGCAGTTCCTGCTGTTGTGTTCTTGTCTGGTGGACAGAGTGAGGAGGAGGCAACACTCAACCTCAATGCCATGAACAAATTGAAGGGAAAGAAGCCGTGGGCACTTTCTTTCTCTTTTGGAAGAGCACTTCAGCAGAGTACTCTCAAGGCATGGGCTGGGAAAGATGAAAACATTAAGAAGGCTCAGGAAGCATTCATTTCTAGGTGCAGGGCTAACTCACAAGCAACTTTGGGAACTTATAAAGGTGATTCTACCCTTGGTGATGGTGCCTCTGAGTCTCTCCATGTTAAGGATTACAAATACTAA

Protein sequence

>MS.gene24640.t1

MSFFKSKYQDELIANAAYIGSPGKGILAADESTGTIGKRLASINVENVETNRRALRELLFTTPGAFDCLSGVILYEETLYQKTAAGKPFVELLKEGGVLPGIKVDKGTVELAGTNGETTTQGLDGLGQRCQKYYEAGARFAKWRAVLKIGPNEPSELSIHENAYGLARYAVICQENGLVPIVEPEILVDGSHDINKCAEVTERVLAACYKALSDHHVLLEGTLLKPNMVTPGSDSQKVAPEVIAEYTVKALQRTVPAAVPAVVFLSGGQSEEEATLNLNAMNKLKGKKPWALSFSFGRALQQSTLKAWAGKDENIKKAQEAFISRCRANSQATLGTYKGDSTLGDGASESLHVKDYKY