AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24901

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24901.t1 MTR_4g011930 94.196 448 15 2 1 448 1 437 0.0 827
MS.gene24901.t1 MTR_7g060890 52.448 143 24 1 1 143 1 99 6.51e-33 120
MS.gene24901.t1 MTR_3g032750 50.350 143 33 2 1 143 1 105 2.43e-31 122
MS.gene24901.t1 MTR_1g112060 76.136 88 19 1 1 86 115 202 3.64e-28 112
MS.gene24901.t1 MTR_4g014050 55.932 59 24 1 3 61 717 773 7.44e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24901.t1 AT1G52380 46.089 473 195 15 1 447 1 439 2.41e-103 315
MS.gene24901.t1 AT1G52380 46.089 473 195 15 1 447 1 439 2.41e-103 315
MS.gene24901.t1 AT1G52380 46.089 473 195 15 1 447 1 439 2.41e-103 315
MS.gene24901.t1 AT1G52380 46.089 473 195 15 1 447 1 439 2.41e-103 315
MS.gene24901.t1 AT3G15970 42.469 478 230 14 1 447 1 464 1.02e-92 288
MS.gene24901.t1 AT3G15970 42.469 478 230 14 1 447 1 464 1.02e-92 288

Find 121 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACAGGTCTTGCTGGGTC+TGG 0.282996 4.1:+83948610 MS.gene24901:CDS
TGAAATGAAGCTCACAAATA+TGG 0.293632 4.1:+83949023 MS.gene24901:CDS
ATATTTGTGAGCTTCATTTC+AGG 0.313432 4.1:-83949021 None:intergenic
TTATCTAACGCTGGAAGTTC+TGG 0.321462 4.1:+83948745 MS.gene24901:CDS
TTGAAACCTGACCAGCCTTT+AGG 0.324636 4.1:+83948715 MS.gene24901:CDS
CAGAGTCCTTATGAGGTCTA+AGG 0.326154 4.1:+83948963 MS.gene24901:CDS
TGTTACTTTGACCATTCTTC+TGG 0.332895 4.1:-83948029 None:intergenic
AACGCTGGAAGTTCTGGTTT+TGG 0.337784 4.1:+83948751 MS.gene24901:CDS
AATGCCTTCACAGGTCTTGC+TGG 0.338943 4.1:+83948604 MS.gene24901:CDS
CCTGACCAGCCTTTAGGTCT+TGG 0.361060 4.1:+83948721 MS.gene24901:CDS
TCATCTTCCTCGTCGTCAAT+AGG 0.362423 4.1:-83947953 None:intergenic
ACCTCAGGAGCTTTGCTCTC+TGG 0.367425 4.1:-83948190 None:intergenic
TGTAGACCCGAAGGAAAATA+AGG 0.369166 4.1:-83948644 None:intergenic
TCTTCATCCTTAGCTTTCTC+TGG 0.371345 4.1:-83948157 None:intergenic
TAAGAAGGAAGTTGCTGATA+AGG 0.373431 4.1:+83948354 MS.gene24901:CDS
AACAAATGATGGGTCTACTT+TGG 0.384601 4.1:+83948666 MS.gene24901:CDS
CGTATACCAGCGAAAGGGTT+TGG 0.386213 4.1:-83948076 None:intergenic
GAAGCCTTGGGAGAGTTCTC+TGG 0.387453 4.1:-83949195 None:intergenic
TCTACTTTGGGTAGTGGGTC+CGG 0.396921 4.1:+83948679 MS.gene24901:CDS
TCTTGAAAGTCCCGGCTTCA+AGG 0.403876 4.1:-83947982 None:intergenic
TTCCTGCAGTGTTTCAGTCT+TGG 0.406473 4.1:-83948797 None:intergenic
GAGCGACAGTGACAACTCTA+AGG 0.408430 4.1:+83948285 MS.gene24901:CDS
AATTTCCCTTAGACCTCATA+AGG 0.415992 4.1:-83948969 None:intergenic
AGCTCAAACATCAGAAGCCT+TGG 0.417787 4.1:-83949208 None:intergenic
CCAAGACCTAAAGGCTGGTC+AGG 0.423398 4.1:-83948721 None:intergenic
ACAAATGATGGGTCTACTTT+GGG 0.423993 4.1:+83948667 MS.gene24901:CDS
GGTTGGAAGGAACGTGGAAA+GGG 0.429315 4.1:+83948898 MS.gene24901:CDS
TCATCAAAGAAAAGGGCTGC+TGG 0.434481 4.1:+83947908 MS.gene24901:CDS
TTTGCATTGAAGTTCAAAGA+TGG 0.435158 4.1:+83949102 MS.gene24901:CDS
ACTGAATCCACTGCCAAGTC+TGG 0.437172 4.1:+83948112 MS.gene24901:CDS
TATTTGTGAGCTTCATTTCA+GGG 0.440319 4.1:-83949020 None:intergenic
TTCGGGTCTACAACAAATGA+TGG 0.442733 4.1:+83948655 MS.gene24901:CDS
CCTTACAGTCATCAAAGAAA+AGG 0.442829 4.1:+83947900 MS.gene24901:CDS
GAGCAAAGCTCCTGAGGTTG+AGG 0.446588 4.1:+83948195 MS.gene24901:CDS
AGGCAAGGAGCTTGCGGAGA+AGG 0.452508 4.1:+83948261 MS.gene24901:CDS
GGTAGATAATGAACAGAGTA+AGG 0.452713 4.1:+83948306 MS.gene24901:CDS
AGTAAGTGAAAGCAAGGATA+AGG 0.460546 4.1:+83948477 MS.gene24901:CDS
AGTAAGCGAAAGCAAGGATA+AGG 0.460546 4.1:+83948507 MS.gene24901:CDS
CAGGAAGTCGTTGTTGAAAC+CGG 0.466180 4.1:+83948814 MS.gene24901:CDS
GCTCACAAATATGGAGAAGA+AGG 0.474042 4.1:+83949032 MS.gene24901:CDS
ATGACGCTGCCCTTGAAGCC+GGG 0.474337 4.1:+83947972 MS.gene24901:CDS
GATGACGCTGCCCTTGAAGC+CGG 0.476093 4.1:+83947971 MS.gene24901:CDS
ATGGGTCTACTTTGGGTAGT+GGG 0.480263 4.1:+83948674 MS.gene24901:CDS
ACTGGCTTTCTTGAAAGTCC+CGG 0.480603 4.1:-83947990 None:intergenic
GGTTGCAAGAACCTCCTCAC+TGG 0.485123 4.1:-83948008 None:intergenic
AAATAGTGAAAGCAAGGATA+AGG 0.486758 4.1:+83948447 MS.gene24901:CDS
AGTGACGAGCCTACTGTTGA+AGG 0.487101 4.1:+83948541 MS.gene24901:CDS
CCCTTCAGTGGCACATGCAA+AGG 0.487875 4.1:-83949061 None:intergenic
GATTGAAAATGTGGATAAGA+AGG 0.488236 4.1:+83948339 MS.gene24901:CDS
AGTAGTAGCTTCACCAGACT+TGG 0.494029 4.1:-83948125 None:intergenic
AGGTTGGAAGGAACGTGGAA+AGG 0.496279 4.1:+83948897 MS.gene24901:CDS
CGTCGTCAATAGGAGTGTCT+CGG 0.502212 4.1:-83947943 None:intergenic
GCTGTTGAAATGATTTGAAA+GGG 0.504844 4.1:-83948567 None:intergenic
GATGGGTCTACTTTGGGTAG+TGG 0.506943 4.1:+83948673 MS.gene24901:CDS
TTGCATTGAAGTTCAAAGAT+GGG 0.509535 4.1:+83949103 MS.gene24901:CDS
AGTCTTGAAATCCTCCACTA+TGG 0.509950 4.1:-83949127 None:intergenic
CTTACAGTCATCAAAGAAAA+GGG 0.514198 4.1:+83947901 MS.gene24901:CDS
TTGGAGTAGATTTATTCTGT+TGG 0.517375 4.1:-83948057 None:intergenic
TTGAGTTTGCAGATGGAGGT+TGG 0.519670 4.1:+83948881 MS.gene24901:CDS
TTAGATAAACCAAGACCTAA+AGG 0.521590 4.1:-83948730 None:intergenic
TTGTTTGAGTTTGCAGATGG+AGG 0.522768 4.1:+83948877 MS.gene24901:CDS
GTAGATTTGTCCTCAACCTC+AGG 0.523191 4.1:-83948205 None:intergenic
ATGCCTTCACAGGTCTTGCT+GGG 0.525899 4.1:+83948605 MS.gene24901:CDS
GTCGTCAATAGGAGTGTCTC+GGG 0.531300 4.1:-83947942 None:intergenic
GTGTTGTTTGAGTTTGCAGA+TGG 0.533735 4.1:+83948874 MS.gene24901:CDS
TGGACGTAAGATTGAAAATG+TGG 0.535117 4.1:+83948330 MS.gene24901:CDS
CGGTGAAGAAAACGAGGAAG+TGG 0.537379 4.1:+83948834 MS.gene24901:CDS
CTTGAAAGTCCCGGCTTCAA+GGG 0.539539 4.1:-83947981 None:intergenic
AGCTGTTGAAATGATTTGAA+AGG 0.539560 4.1:-83948568 None:intergenic
GTTTGCAGATGGAGGTTGGA+AGG 0.542312 4.1:+83948885 MS.gene24901:CDS
GCTCAAACATCAGAAGCCTT+GGG 0.542932 4.1:-83949207 None:intergenic
GGTTCTTGCAACCAGAAGAA+TGG 0.542934 4.1:+83948018 MS.gene24901:CDS
AGACAAAGTAAGTGAAAGCA+AGG 0.543217 4.1:+83948471 MS.gene24901:CDS
GATAATGAACAGAGTAAGGA+TGG 0.544320 4.1:+83948310 MS.gene24901:CDS
AACTAGTGGAACAGAAAAGA+AGG 0.545059 4.1:+83948939 MS.gene24901:CDS
AGCAATCAAAATGCCTTCAC+AGG 0.548375 4.1:+83948595 MS.gene24901:CDS
CTTAGACCTCATAAGGACTC+TGG 0.552554 4.1:-83948962 None:intergenic
AGACAAAGTAAGCGAAAGCA+AGG 0.554995 4.1:+83948501 MS.gene24901:CDS
ATAAACCAAGACCTAAAGGC+TGG 0.555593 4.1:-83948726 None:intergenic
CATCAAAGAAAAGGGCTGCT+GGG 0.556088 4.1:+83947909 MS.gene24901:CDS
AGCTTCACCAGACTTGGCAG+TGG 0.560811 4.1:-83948119 None:intergenic
GCCAGAGAGCAAAGCTCCTG+AGG 0.563576 4.1:+83948189 MS.gene24901:CDS
TTCCAAGACTGAAACACTGC+AGG 0.563759 4.1:+83948795 MS.gene24901:CDS
GCAGTGGATTCAGTAGGAGC+AGG 0.564389 4.1:-83948103 None:intergenic
CAATGCAGGCAAGGAGCTTG+CGG 0.566828 4.1:+83948255 MS.gene24901:CDS
AAGACGGTCTTTCCCTTCAG+TGG 0.567228 4.1:-83949073 None:intergenic
TCTACTCCAAACCCTTTCGC+TGG 0.571206 4.1:+83948070 MS.gene24901:CDS
GGCAAGCGTATACCAGCGAA+AGG 0.572904 4.1:-83948082 None:intergenic
GACTGCTATCACAGCACACA+AGG 0.572911 4.1:+83949146 MS.gene24901:CDS
CCTTTGCATGTGCCACTGAA+GGG 0.575965 4.1:+83949061 MS.gene24901:CDS
GAACGGAAATAGTGAAAGCA+AGG 0.577253 4.1:+83948441 MS.gene24901:CDS
AAAGGGCCACCTTCAACAGT+AGG 0.577327 4.1:-83948550 None:intergenic
AGAGTCCTTATGAGGTCTAA+GGG 0.578040 4.1:+83948964 MS.gene24901:CDS
ACCTTTGCATGTGCCACTGA+AGG 0.579423 4.1:+83949060 MS.gene24901:CDS
AGACCCAGCAAGACCTGTGA+AGG 0.582987 4.1:-83948608 None:intergenic
GTTCAAAGATGGGTCCATAG+TGG 0.583030 4.1:+83949113 MS.gene24901:CDS
AGAAGGCCAGAGTCCTTATG+AGG 0.594988 4.1:+83948956 MS.gene24901:CDS
GTGAAAGTGAATGTAACTAG+TGG 0.595453 4.1:+83948925 MS.gene24901:CDS
TACTTCAAACAACGATGTTG+CGG 0.596477 4.1:+83948225 MS.gene24901:CDS
GGTCTTGGTTTATCTAACGC+TGG 0.598167 4.1:+83948736 MS.gene24901:CDS
GGACAGAAACAATGCAGGCA+AGG 0.604459 4.1:+83948246 MS.gene24901:CDS
ATCATTTGTTGTAGACCCGA+AGG 0.607405 4.1:-83948653 None:intergenic
GTTGCTGATAAGGAGAGTGC+CGG 0.608076 4.1:+83948364 MS.gene24901:CDS
TCAATGCAAATGTTGAAAGA+CGG 0.609075 4.1:-83949089 None:intergenic
TCGGGTCTACAACAAATGAT+GGG 0.616965 4.1:+83948656 MS.gene24901:CDS
GTTGCGGACAGAAACAATGC+AGG 0.625399 4.1:+83948241 MS.gene24901:CDS
CTCACAAATATGGAGAAGAA+GGG 0.630174 4.1:+83949033 MS.gene24901:CDS
GACTCCAGAGAACTCTCCCA+AGG 0.630564 4.1:+83949191 MS.gene24901:CDS
AACGCAGCCAGAGAAAGCTA+AGG 0.632276 4.1:+83948150 MS.gene24901:CDS
TATCACAGCACACAAGGGTG+AGG 0.638173 4.1:+83949152 MS.gene24901:CDS
CAAAGATGGGTCCATAGTGG+AGG 0.639977 4.1:+83949116 MS.gene24901:CDS
GCAAGCGTATACCAGCGAAA+GGG 0.643938 4.1:-83948081 None:intergenic
TTTCAAGAAAGCCAGTGAGG+AGG 0.650952 4.1:+83947997 MS.gene24901:CDS
ACTGAGAACAGTGATAAGAA+CGG 0.660347 4.1:+83948424 MS.gene24901:CDS
GACGAGCCTACTGTTGAAGG+TGG 0.667298 4.1:+83948544 MS.gene24901:CDS
GACTTTCAAGAAAGCCAGTG+AGG 0.667433 4.1:+83947994 MS.gene24901:CDS
GATGGAGGTTGGAAGGAACG+TGG 0.668623 4.1:+83948892 MS.gene24901:CDS
GACTTGGCAGTGGATTCAGT+AGG 0.688140 4.1:-83948109 None:intergenic
TGAAACCGGTGAAGAAAACG+AGG 0.705134 4.1:+83948828 MS.gene24901:CDS
ACTGCTATCACAGCACACAA+GGG 0.723065 4.1:+83949147 MS.gene24901:CDS
AGACACTCCTATTGACGACG+AGG 0.724010 4.1:+83947946 MS.gene24901:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TTTCAATCCAAAAATAGAAC+CGG - chr4.1:83948701-83948720 None:intergenic 25.0%
!!! TCAGTATTTTTTTCTTCTGT+AGG - chr4.1:83948409-83948428 None:intergenic 25.0%
AAATAGTGAAAGCAAGGATA+AGG + chr4.1:83948447-83948466 MS.gene24901:CDS 30.0%
AGCTGTTGAAATGATTTGAA+AGG - chr4.1:83948571-83948590 None:intergenic 30.0%
ATATTTGTGAGCTTCATTTC+AGG - chr4.1:83949024-83949043 None:intergenic 30.0%
CTTACAGTCATCAAAGAAAA+GGG + chr4.1:83947901-83947920 MS.gene24901:CDS 30.0%
GATTGAAAATGTGGATAAGA+AGG + chr4.1:83948339-83948358 MS.gene24901:CDS 30.0%
GCTGTTGAAATGATTTGAAA+GGG - chr4.1:83948570-83948589 None:intergenic 30.0%
TATTTGTGAGCTTCATTTCA+GGG - chr4.1:83949023-83949042 None:intergenic 30.0%
TCAATGCAAATGTTGAAAGA+CGG - chr4.1:83949092-83949111 None:intergenic 30.0%
TGAAATGAAGCTCACAAATA+TGG + chr4.1:83949023-83949042 MS.gene24901:CDS 30.0%
TTAGATAAACCAAGACCTAA+AGG - chr4.1:83948733-83948752 None:intergenic 30.0%
TTGCATTGAAGTTCAAAGAT+GGG + chr4.1:83949103-83949122 MS.gene24901:CDS 30.0%
TTGGAGTAGATTTATTCTGT+TGG - chr4.1:83948060-83948079 None:intergenic 30.0%
TTTGCATTGAAGTTCAAAGA+TGG + chr4.1:83949102-83949121 MS.gene24901:CDS 30.0%
!!! GTATTTTTTTCTTCTGTAGG+AGG - chr4.1:83948406-83948425 None:intergenic 30.0%
!!! TCTTCTTCCTTATTTTCCTT+CGG + chr4.1:83948637-83948656 MS.gene24901:CDS 30.0%
AACTAGTGGAACAGAAAAGA+AGG + chr4.1:83948939-83948958 MS.gene24901:CDS 35.0%
AATTTCCCTTAGACCTCATA+AGG - chr4.1:83948972-83948991 None:intergenic 35.0%
ACTGAGAACAGTGATAAGAA+CGG + chr4.1:83948424-83948443 MS.gene24901:CDS 35.0%
AGACAAAGTAAGTGAAAGCA+AGG + chr4.1:83948471-83948490 MS.gene24901:CDS 35.0%
AGTAAGTGAAAGCAAGGATA+AGG + chr4.1:83948477-83948496 MS.gene24901:CDS 35.0%
CCTTACAGTCATCAAAGAAA+AGG + chr4.1:83947900-83947919 MS.gene24901:CDS 35.0%
CTCACAAATATGGAGAAGAA+GGG + chr4.1:83949033-83949052 MS.gene24901:CDS 35.0%
GATAATGAACAGAGTAAGGA+TGG + chr4.1:83948310-83948329 MS.gene24901:CDS 35.0%
GGTAGATAATGAACAGAGTA+AGG + chr4.1:83948306-83948325 MS.gene24901:CDS 35.0%
GTGAAAGTGAATGTAACTAG+TGG + chr4.1:83948925-83948944 MS.gene24901:CDS 35.0%
TAAGAAGGAAGTTGCTGATA+AGG + chr4.1:83948354-83948373 MS.gene24901:CDS 35.0%
TACTTCAAACAACGATGTTG+CGG + chr4.1:83948225-83948244 MS.gene24901:CDS 35.0%
TGGACGTAAGATTGAAAATG+TGG + chr4.1:83948330-83948349 MS.gene24901:CDS 35.0%
!! AACAAATGATGGGTCTACTT+TGG + chr4.1:83948666-83948685 MS.gene24901:CDS 35.0%
!! ACAAATGATGGGTCTACTTT+GGG + chr4.1:83948667-83948686 MS.gene24901:CDS 35.0%
!! CCTTTTCTTTGATGACTGTA+AGG - chr4.1:83947903-83947922 None:intergenic 35.0%
!! TGTTACTTTGACCATTCTTC+TGG - chr4.1:83948032-83948051 None:intergenic 35.0%
!!! CTTCTTCCTTATTTTCCTTC+GGG + chr4.1:83948638-83948657 MS.gene24901:CDS 35.0%
AGACAAAGTAAGCGAAAGCA+AGG + chr4.1:83948501-83948520 MS.gene24901:CDS 40.0%
AGAGTCCTTATGAGGTCTAA+GGG + chr4.1:83948964-83948983 MS.gene24901:CDS 40.0%
AGCAATCAAAATGCCTTCAC+AGG + chr4.1:83948595-83948614 MS.gene24901:CDS 40.0%
AGTAAGCGAAAGCAAGGATA+AGG + chr4.1:83948507-83948526 MS.gene24901:CDS 40.0%
AGTCTTGAAATCCTCCACTA+TGG - chr4.1:83949130-83949149 None:intergenic 40.0%
ATAAACCAAGACCTAAAGGC+TGG - chr4.1:83948729-83948748 None:intergenic 40.0%
GAACGGAAATAGTGAAAGCA+AGG + chr4.1:83948441-83948460 MS.gene24901:CDS 40.0%
GCTCACAAATATGGAGAAGA+AGG + chr4.1:83949032-83949051 MS.gene24901:CDS 40.0%
TCGGGTCTACAACAAATGAT+GGG + chr4.1:83948656-83948675 MS.gene24901:CDS 40.0%
TGTAGACCCGAAGGAAAATA+AGG - chr4.1:83948647-83948666 None:intergenic 40.0%
TTATCTAACGCTGGAAGTTC+TGG + chr4.1:83948745-83948764 MS.gene24901:CDS 40.0%
TTCGGGTCTACAACAAATGA+TGG + chr4.1:83948655-83948674 MS.gene24901:CDS 40.0%
! TCTTCATCCTTAGCTTTCTC+TGG - chr4.1:83948160-83948179 None:intergenic 40.0%
! TTGTTTGAGTTTGCAGATGG+AGG + chr4.1:83948877-83948896 MS.gene24901:CDS 40.0%
!! ATCATTTGTTGTAGACCCGA+AGG - chr4.1:83948656-83948675 None:intergenic 40.0%
!! GTGTTGTTTGAGTTTGCAGA+TGG + chr4.1:83948874-83948893 MS.gene24901:CDS 40.0%
!!! AGGTTCTTTTTCGATCTCAC+CGG - chr4.1:83948386-83948405 None:intergenic 40.0%
!!! AGTTCTGGTTTTGGAACATC+AGG + chr4.1:83948760-83948779 MS.gene24901:CDS 40.0%
ACTGCTATCACAGCACACAA+GGG + chr4.1:83949147-83949166 MS.gene24901:CDS 45.0%
AGTAGTAGCTTCACCAGACT+TGG - chr4.1:83948128-83948147 None:intergenic 45.0%
ATGGGTCTACTTTGGGTAGT+GGG + chr4.1:83948674-83948693 MS.gene24901:CDS 45.0%
CAGAGTCCTTATGAGGTCTA+AGG + chr4.1:83948963-83948982 MS.gene24901:CDS 45.0%
CAGGAAGTCGTTGTTGAAAC+CGG + chr4.1:83948814-83948833 MS.gene24901:CDS 45.0%
CATCAAAGAAAAGGGCTGCT+GGG + chr4.1:83947909-83947928 MS.gene24901:CDS 45.0%
CTTAGACCTCATAAGGACTC+TGG - chr4.1:83948965-83948984 None:intergenic 45.0%
GACTTTCAAGAAAGCCAGTG+AGG + chr4.1:83947994-83948013 MS.gene24901:CDS 45.0%
GGTCTTGGTTTATCTAACGC+TGG + chr4.1:83948736-83948755 MS.gene24901:CDS 45.0%
GGTTCTTGCAACCAGAAGAA+TGG + chr4.1:83948018-83948037 MS.gene24901:CDS 45.0%
GTAGATTTGTCCTCAACCTC+AGG - chr4.1:83948208-83948227 None:intergenic 45.0%
GTTCAAAGATGGGTCCATAG+TGG + chr4.1:83949113-83949132 MS.gene24901:CDS 45.0%
TCATCAAAGAAAAGGGCTGC+TGG + chr4.1:83947908-83947927 MS.gene24901:CDS 45.0%
TCATCTTCCTCGTCGTCAAT+AGG - chr4.1:83947956-83947975 None:intergenic 45.0%
TGAAACCGGTGAAGAAAACG+AGG + chr4.1:83948828-83948847 MS.gene24901:CDS 45.0%
TTCCAAGACTGAAACACTGC+AGG + chr4.1:83948795-83948814 MS.gene24901:CDS 45.0%
TTCCTGCAGTGTTTCAGTCT+TGG - chr4.1:83948800-83948819 None:intergenic 45.0%
TTGAAACCTGACCAGCCTTT+AGG + chr4.1:83948715-83948734 MS.gene24901:CDS 45.0%
TTGAGTTTGCAGATGGAGGT+TGG + chr4.1:83948881-83948900 MS.gene24901:CDS 45.0%
TTTCAAGAAAGCCAGTGAGG+AGG + chr4.1:83947997-83948016 MS.gene24901:CDS 45.0%
! AGTGGGTCCGGTTCTATTTT+TGG + chr4.1:83948691-83948710 MS.gene24901:CDS 45.0%
! CACTTCCTCGTTTTCTTCAC+CGG - chr4.1:83948836-83948855 None:intergenic 45.0%
!! ACTGGCTTTCTTGAAAGTCC+CGG - chr4.1:83947993-83948012 None:intergenic 45.0%
!!! AACGCTGGAAGTTCTGGTTT+TGG + chr4.1:83948751-83948770 MS.gene24901:CDS 45.0%
AAAGGGCCACCTTCAACAGT+AGG - chr4.1:83948553-83948572 None:intergenic 50.0%
AACGCAGCCAGAGAAAGCTA+AGG + chr4.1:83948150-83948169 MS.gene24901:CDS 50.0%
AAGACGGTCTTTCCCTTCAG+TGG - chr4.1:83949076-83949095 None:intergenic 50.0%
AATGCCTTCACAGGTCTTGC+TGG + chr4.1:83948604-83948623 MS.gene24901:CDS 50.0%
ACTGAATCCACTGCCAAGTC+TGG + chr4.1:83948112-83948131 MS.gene24901:CDS 50.0%
AGAAGGCCAGAGTCCTTATG+AGG + chr4.1:83948956-83948975 MS.gene24901:CDS 50.0%
AGACACTCCTATTGACGACG+AGG + chr4.1:83947946-83947965 MS.gene24901:CDS 50.0%
AGGTTGGAAGGAACGTGGAA+AGG + chr4.1:83948897-83948916 MS.gene24901:CDS 50.0%
AGTGACGAGCCTACTGTTGA+AGG + chr4.1:83948541-83948560 MS.gene24901:CDS 50.0%
ATGCCTTCACAGGTCTTGCT+GGG + chr4.1:83948605-83948624 MS.gene24901:CDS 50.0%
CAAAGATGGGTCCATAGTGG+AGG + chr4.1:83949116-83949135 MS.gene24901:CDS 50.0%
CGGTGAAGAAAACGAGGAAG+TGG + chr4.1:83948834-83948853 MS.gene24901:CDS 50.0%
CGTATACCAGCGAAAGGGTT+TGG - chr4.1:83948079-83948098 None:intergenic 50.0%
CTTGAAAGTCCCGGCTTCAA+GGG - chr4.1:83947984-83948003 None:intergenic 50.0%
GACTGCTATCACAGCACACA+AGG + chr4.1:83949146-83949165 MS.gene24901:CDS 50.0%
GAGCGACAGTGACAACTCTA+AGG + chr4.1:83948285-83948304 MS.gene24901:CDS 50.0%
GATGGGTCTACTTTGGGTAG+TGG + chr4.1:83948673-83948692 MS.gene24901:CDS 50.0%
GCAAGCGTATACCAGCGAAA+GGG - chr4.1:83948084-83948103 None:intergenic 50.0%
GGACAGAAACAATGCAGGCA+AGG + chr4.1:83948246-83948265 MS.gene24901:CDS 50.0%
GGTTGGAAGGAACGTGGAAA+GGG + chr4.1:83948898-83948917 MS.gene24901:CDS 50.0%
GTTGCGGACAGAAACAATGC+AGG + chr4.1:83948241-83948260 MS.gene24901:CDS 50.0%
GTTTGCAGATGGAGGTTGGA+AGG + chr4.1:83948885-83948904 MS.gene24901:CDS 50.0%
TATCACAGCACACAAGGGTG+AGG + chr4.1:83949152-83949171 MS.gene24901:CDS 50.0%
TCTACTCCAAACCCTTTCGC+TGG + chr4.1:83948070-83948089 MS.gene24901:CDS 50.0%
TCTTGAAAGTCCCGGCTTCA+AGG - chr4.1:83947985-83948004 None:intergenic 50.0%
! ACCTTTGCATGTGCCACTGA+AGG + chr4.1:83949060-83949079 MS.gene24901:CDS 50.0%
! CCTTTGCATGTGCCACTGAA+GGG + chr4.1:83949061-83949080 MS.gene24901:CDS 50.0%
! GACTTGGCAGTGGATTCAGT+AGG - chr4.1:83948112-83948131 None:intergenic 50.0%
! GTTGCTGATAAGGAGAGTGC+CGG + chr4.1:83948364-83948383 MS.gene24901:CDS 50.0%
!! CGTCGTCAATAGGAGTGTCT+CGG - chr4.1:83947946-83947965 None:intergenic 50.0%
!! GTCGTCAATAGGAGTGTCTC+GGG - chr4.1:83947945-83947964 None:intergenic 50.0%
!! TCTACTTTGGGTAGTGGGTC+CGG + chr4.1:83948679-83948698 MS.gene24901:CDS 50.0%
ACCTCAGGAGCTTTGCTCTC+TGG - chr4.1:83948193-83948212 None:intergenic 55.0%
AGACCCAGCAAGACCTGTGA+AGG - chr4.1:83948611-83948630 None:intergenic 55.0%
AGCTTCACCAGACTTGGCAG+TGG - chr4.1:83948122-83948141 None:intergenic 55.0%
CAATGCAGGCAAGGAGCTTG+CGG + chr4.1:83948255-83948274 MS.gene24901:CDS 55.0%
CCCTTCAGTGGCACATGCAA+AGG - chr4.1:83949064-83949083 None:intergenic 55.0%
CCTGACCAGCCTTTAGGTCT+TGG + chr4.1:83948721-83948740 MS.gene24901:CDS 55.0%
GAAGCCTTGGGAGAGTTCTC+TGG - chr4.1:83949198-83949217 None:intergenic 55.0%
GACGAGCCTACTGTTGAAGG+TGG + chr4.1:83948544-83948563 MS.gene24901:CDS 55.0%
GACTCCAGAGAACTCTCCCA+AGG + chr4.1:83949191-83949210 MS.gene24901:CDS 55.0%
GAGCAAAGCTCCTGAGGTTG+AGG + chr4.1:83948195-83948214 MS.gene24901:CDS 55.0%
GATGGAGGTTGGAAGGAACG+TGG + chr4.1:83948892-83948911 MS.gene24901:CDS 55.0%
GGCAAGCGTATACCAGCGAA+AGG - chr4.1:83948085-83948104 None:intergenic 55.0%
GGTTGCAAGAACCTCCTCAC+TGG - chr4.1:83948011-83948030 None:intergenic 55.0%
TTCACAGGTCTTGCTGGGTC+TGG + chr4.1:83948610-83948629 MS.gene24901:CDS 55.0%
! CCAAGACCTAAAGGCTGGTC+AGG - chr4.1:83948724-83948743 None:intergenic 55.0%
! GCAGTGGATTCAGTAGGAGC+AGG - chr4.1:83948106-83948125 None:intergenic 55.0%
AGGCAAGGAGCTTGCGGAGA+AGG + chr4.1:83948261-83948280 MS.gene24901:CDS 60.0%
ATGACGCTGCCCTTGAAGCC+GGG + chr4.1:83947972-83947991 MS.gene24901:CDS 60.0%
GATGACGCTGCCCTTGAAGC+CGG + chr4.1:83947971-83947990 MS.gene24901:CDS 60.0%
GCCAGAGAGCAAAGCTCCTG+AGG + chr4.1:83948189-83948208 MS.gene24901:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 83947881 83949227 83947881 ID=MS.gene24901
chr4.1 mRNA 83947881 83949227 83947881 ID=MS.gene24901.t1;Parent=MS.gene24901
chr4.1 exon 83947881 83949227 83947881 ID=MS.gene24901.t1.exon1;Parent=MS.gene24901.t1
chr4.1 CDS 83947881 83949227 83947881 ID=cds.MS.gene24901.t1;Parent=MS.gene24901.t1
Gene Sequence

>MS.gene24901

ATGGGGGATGCTGAGAATGCCTTACAGTCATCAAAGAAAAGGGCTGCTGGGCGTGAGCTCACCCGAGACACTCCTATTGACGACGAGGAAGATGACGCTGCCCTTGAAGCCGGGACTTTCAAGAAAGCCAGTGAGGAGGTTCTTGCAACCAGAAGAATGGTCAAAGTAACACGTCGCCAACAGAATAAATCTACTCCAAACCCTTTCGCTGGTATACGCTTGCCTGCTCCTACTGAATCCACTGCCAAGTCTGGTGAAGCTACTACTGAAACGCAGCCAGAGAAAGCTAAGGATGAAGAAACTAAGCAGCCAGAGAGCAAAGCTCCTGAGGTTGAGGACAAATCTACTTCAAACAACGATGTTGCGGACAGAAACAATGCAGGCAAGGAGCTTGCGGAGAAGGAGAGCGACAGTGACAACTCTAAGGTAGATAATGAACAGAGTAAGGATGGACGTAAGATTGAAAATGTGGATAAGAAGGAAGTTGCTGATAAGGAGAGTGCCGGTGAGATCGAAAAAGAACCTCCTACAGAAGAAAAAAATACTGAGAACAGTGATAAGAACGGAAATAGTGAAAGCAAGGATAAGGAAGACAAAGTAAGTGAAAGCAAGGATAAGGAAGACAAAGTAAGCGAAAGCAAGGATAAGGAAGACAAAGTAAGTGACGAGCCTACTGTTGAAGGTGGCCCTTTCAAATCATTTCAACAGCTTTCGAGCAATCAAAATGCCTTCACAGGTCTTGCTGGGTCTGGATTTTCTTCTTCCTTATTTTCCTTCGGGTCTACAACAAATGATGGGTCTACTTTGGGTAGTGGGTCCGGTTCTATTTTTGGATTGAAACCTGACCAGCCTTTAGGTCTTGGTTTATCTAACGCTGGAAGTTCTGGTTTTGGAACATCAGGAGCATCTGCTGTTTCCAAGACTGAAACACTGCAGGAAGTCGTTGTTGAAACCGGTGAAGAAAACGAGGAAGTGGTTTTTAATGCAGATTCAGTGTTGTTTGAGTTTGCAGATGGAGGTTGGAAGGAACGTGGAAAGGGAGAAGTGAAAGTGAATGTAACTAGTGGAACAGAAAAGAAGGCCAGAGTCCTTATGAGGTCTAAGGGAAATTACAGATTGATTTTAAATGCACGTCTTTACCCTGAAATGAAGCTCACAAATATGGAGAAGAAGGGTGTTACCTTTGCATGTGCCACTGAAGGGAAAGACCGTCTTTCAACATTTGCATTGAAGTTCAAAGATGGGTCCATAGTGGAGGATTTCAAGACTGCTATCACAGCACACAAGGGTGAGGCATCTACAATTGTGAAGACTCCAGAGAACTCTCCCAAGGCTTCTGATGTTTGA
Protein sequence

>MS.gene24901.t1

MGDAENALQSSKKRAAGRELTRDTPIDDEEDDAALEAGTFKKASEEVLATRRMVKVTRRQQNKSTPNPFAGIRLPAPTESTAKSGEATTETQPEKAKDEETKQPESKAPEVEDKSTSNNDVADRNNAGKELAEKESDSDNSKVDNEQSKDGRKIENVDKKEVADKESAGEIEKEPPTEEKNTENSDKNGNSESKDKEDKVSESKDKEDKVSESKDKEDKVSDEPTVEGGPFKSFQQLSSNQNAFTGLAGSGFSSSLFSFGSTTNDGSTLGSGSGSIFGLKPDQPLGLGLSNAGSSGFGTSGASAVSKTETLQEVVVETGEENEEVVFNADSVLFEFADGGWKERGKGEVKVNVTSGTEKKARVLMRSKGNYRLILNARLYPEMKLTNMEKKGVTFACATEGKDRLSTFALKFKDGSIVEDFKTAITAHKGEASTIVKTPENSPKASDV