Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24955.t1 | XP_013454779.1 | 98.3 | 418 | 7 | 0 | 1 | 418 | 42 | 459 | 2.70E-221 | 777.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24955.t1 | F4KGN5 | 62.9 | 418 | 152 | 3 | 2 | 418 | 51 | 466 | 1.3e-139 | 497.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24955.t1 | A0A072USG9 | 98.3 | 418 | 7 | 0 | 1 | 418 | 42 | 459 | 1.9e-221 | 777.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050868 | MS.gene24955 | 0.800819 | 1.21E-48 | -1.69E-46 |
| MS.gene050871 | MS.gene24955 | 0.800137 | 1.66E-48 | -1.69E-46 |
| MS.gene051874 | MS.gene24955 | 0.825053 | 5.78E-54 | -1.69E-46 |
| MS.gene052999 | MS.gene24955 | 0.803718 | 3.05E-49 | -1.69E-46 |
| MS.gene05494 | MS.gene24955 | 0.830309 | 3.16E-55 | -1.69E-46 |
| MS.gene057289 | MS.gene24955 | 0.80962 | 1.73E-50 | -1.69E-46 |
| MS.gene05837 | MS.gene24955 | 0.802441 | 5.60E-49 | -1.69E-46 |
| MS.gene060837 | MS.gene24955 | 0.806655 | 7.40E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24955.t1 | MTR_4g013240 | 98.325 | 418 | 7 | 0 | 1 | 418 | 42 | 459 | 0.0 | 816 |
| MS.gene24955.t1 | MTR_4g013245 | 90.431 | 418 | 39 | 1 | 1 | 418 | 1 | 417 | 0.0 | 750 |
| MS.gene24955.t1 | MTR_4g013245 | 88.153 | 287 | 33 | 1 | 132 | 418 | 1 | 286 | 0.0 | 508 |
| MS.gene24955.t1 | MTR_1g084140 | 25.120 | 418 | 265 | 11 | 11 | 417 | 165 | 545 | 9.90e-17 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24955.t1 | AT5G03570 | 62.919 | 418 | 152 | 3 | 2 | 418 | 51 | 466 | 0.0 | 526 |
| MS.gene24955.t1 | AT5G03570 | 62.919 | 418 | 152 | 3 | 2 | 418 | 51 | 466 | 0.0 | 526 |
| MS.gene24955.t1 | AT5G03570 | 62.919 | 418 | 152 | 3 | 2 | 418 | 6 | 421 | 0.0 | 525 |
| MS.gene24955.t1 | AT2G38460 | 61.190 | 420 | 156 | 3 | 2 | 418 | 55 | 470 | 0.0 | 517 |
| MS.gene24955.t1 | AT2G38460 | 61.190 | 420 | 156 | 3 | 2 | 418 | 55 | 470 | 0.0 | 517 |
| MS.gene24955.t1 | AT2G38460 | 61.190 | 420 | 156 | 3 | 2 | 418 | 55 | 470 | 0.0 | 517 |
| MS.gene24955.t1 | AT2G38460 | 61.190 | 420 | 156 | 3 | 2 | 418 | 55 | 470 | 0.0 | 517 |
| MS.gene24955.t1 | AT2G38460 | 61.190 | 420 | 156 | 3 | 2 | 418 | 55 | 470 | 0.0 | 517 |
| MS.gene24955.t1 | AT2G38460 | 61.190 | 420 | 156 | 3 | 2 | 418 | 55 | 470 | 0.0 | 517 |
| MS.gene24955.t1 | AT5G03570 | 59.234 | 444 | 152 | 4 | 2 | 418 | 51 | 492 | 6.25e-180 | 512 |
| MS.gene24955.t1 | AT2G38460 | 60.197 | 304 | 114 | 3 | 118 | 418 | 26 | 325 | 8.49e-126 | 369 |
| MS.gene24955.t1 | AT2G38460 | 60.197 | 304 | 114 | 3 | 118 | 418 | 26 | 325 | 8.49e-126 | 369 |
| MS.gene24955.t1 | AT5G26820 | 26.340 | 429 | 264 | 12 | 1 | 416 | 165 | 554 | 5.47e-20 | 92.8 |
Find 83 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATTCACTTCAGTCCTTTA+TGG | 0.125940 | 4.1:-82572995 | MS.gene24955:CDS |
| GCATTGTTTGGCCCTTTAAT+TGG | 0.190357 | 4.1:-82575923 | MS.gene24955:CDS |
| TCAACCCAAGTTCCAATTAA+AGG | 0.213970 | 4.1:+82575911 | None:intergenic |
| TCCCTTGTTTAGCTGCATTA+TGG | 0.217736 | 4.1:-82573300 | MS.gene24955:CDS |
| ATGATGTTAAAATGCCATTT+TGG | 0.223694 | 4.1:+82573275 | None:intergenic |
| AAGGAATACTTCAACTTCTA+AGG | 0.236533 | 4.1:-82574242 | MS.gene24955:CDS |
| GTTTATATATGATCAGTATT+TGG | 0.251156 | 4.1:-82576000 | MS.gene24955:CDS |
| GAACTGGACTCTGGTCTATT+TGG | 0.272120 | 4.1:-82573516 | MS.gene24955:CDS |
| TCAGTCCTTTATGGATCTAT+TGG | 0.276334 | 4.1:-82572986 | MS.gene24955:CDS |
| TTCATCTTTGTCAGCAGTTC+CGG | 0.289433 | 4.1:+82574496 | None:intergenic |
| GGATCTATTGGCCTATGTTA+TGG | 0.293731 | 4.1:-82572974 | MS.gene24955:CDS |
| CAGCAAGAAGTTGTTCTTCC+TGG | 0.293929 | 4.1:-82574097 | MS.gene24955:CDS |
| GGTATACCTGCATATGTTAT+TGG | 0.306448 | 4.1:-82573622 | MS.gene24955:CDS |
| ATCAATATCTGTGGTGGAAT+TGG | 0.310884 | 4.1:-82575082 | MS.gene24955:CDS |
| GCTGCATTATGGATCCAAAA+TGG | 0.333988 | 4.1:-82573289 | MS.gene24955:CDS |
| TTGGAATAGTGCTTCTGTTT+GGG | 0.334106 | 4.1:-82574365 | MS.gene24955:CDS |
| TTTAACATCATATATATTGA+TGG | 0.336883 | 4.1:-82573263 | MS.gene24955:CDS |
| TCTGCTTCCATTGCATTGTT+TGG | 0.337950 | 4.1:-82575935 | MS.gene24955:CDS |
| GGAGTGCTTTCAACTCTTGC+TGG | 0.344551 | 4.1:-82575061 | MS.gene24955:CDS |
| CTACTTGCACCTGTTATAAC+TGG | 0.346354 | 4.1:-82574439 | MS.gene24955:CDS |
| CTTCTGTTTGGGTGGAGTAT+TGG | 0.348225 | 4.1:-82574354 | MS.gene24955:CDS |
| CTGCTGTATGCAGCAATATA+TGG | 0.350292 | 4.1:-82575968 | MS.gene24955:CDS |
| CGAGGAATAAGTGCTGTAAT+TGG | 0.353423 | 4.1:-82573592 | MS.gene24955:CDS |
| TTTGGAATAGTGCTTCTGTT+TGG | 0.364582 | 4.1:-82574366 | MS.gene24955:CDS |
| AACAGGTGCAAGTAGCTTGC+AGG | 0.369428 | 4.1:+82574447 | None:intergenic |
| ATTATGAAGCCAGTTATAAC+AGG | 0.369589 | 4.1:+82574430 | None:intergenic |
| CAACCCAAGTTCCAATTAAA+GGG | 0.374511 | 4.1:+82575912 | None:intergenic |
| GATATTTGATATTGTAGAAC+AGG | 0.378977 | 4.1:+82573547 | None:intergenic |
| GATCTATTGGCCTATGTTAT+GGG | 0.383403 | 4.1:-82572973 | MS.gene24955:CDS |
| CTGCTATAACTTTAGCACTT+TGG | 0.399038 | 4.1:-82574384 | MS.gene24955:CDS |
| TGTTCTTCCTGGACTAGCTC+TGG | 0.417677 | 4.1:-82574086 | MS.gene24955:CDS |
| TTGGCCCTTTAATTGGAACT+TGG | 0.418154 | 4.1:-82575916 | MS.gene24955:CDS |
| CAGTTCCGGTGGTTGGCCTT+CGG | 0.428049 | 4.1:+82574510 | None:intergenic |
| CAAATATCAGCTATTAGAAC+TGG | 0.431609 | 4.1:-82573532 | MS.gene24955:CDS |
| GCTGCATACAGCAGTGAGTC+TGG | 0.436769 | 4.1:+82575977 | None:intergenic |
| TGATGACAGCAACTTTAGAA+TGG | 0.445718 | 4.1:-82573648 | MS.gene24955:CDS |
| CAATATCTCGGCTTGGACTG+TGG | 0.477996 | 4.1:-82573231 | MS.gene24955:CDS |
| AAAGCCTTTCCATTCTCCTC+TGG | 0.480777 | 4.1:+82574284 | None:intergenic |
| CATCACAAAGTGATCTAGAA+AGG | 0.482356 | 4.1:-82574261 | MS.gene24955:CDS |
| GATGACAGCAACTTTAGAAT+GGG | 0.482523 | 4.1:-82573647 | MS.gene24955:CDS |
| ATAGGCCAATAGATCCATAA+AGG | 0.488945 | 4.1:+82572981 | None:intergenic |
| ACTCTGGTCTATTTGGTCTC+AGG | 0.489072 | 4.1:-82573509 | MS.gene24955:intron |
| AAATCTCTTATGTGGATGCT+TGG | 0.489879 | 4.1:-82574132 | MS.gene24955:CDS |
| TCAAAGTAGCCAGAGGAGAA+TGG | 0.495455 | 4.1:-82574293 | MS.gene24955:CDS |
| CAAAGATGAGTAGACAAGTA+AGG | 0.497546 | 4.1:+82575147 | None:intergenic |
| TTGTCAGCAGTTCCGGTGGT+TGG | 0.497663 | 4.1:+82574503 | None:intergenic |
| ATCTGTACTTCAACAAATGC+AGG | 0.500067 | 4.1:-82573197 | MS.gene24955:intron |
| GCTATTCCAATAACATATGC+AGG | 0.507380 | 4.1:+82573616 | None:intergenic |
| TGGCCCTTTAATTGGAACTT+GGG | 0.508372 | 4.1:-82575915 | MS.gene24955:CDS |
| GAGTCGGATCGTATGATTGT+TGG | 0.525421 | 4.1:-82573027 | MS.gene24955:CDS |
| TGGTAAGCGTCGCAATATCT+CGG | 0.527222 | 4.1:-82573243 | MS.gene24955:CDS |
| CAATCTTGATAGAAAGAGAA+TGG | 0.532256 | 4.1:-82575036 | MS.gene24955:intron |
| GATAGCACAGAATTGCTAGA+TGG | 0.536121 | 4.1:-82574190 | MS.gene24955:CDS |
| TACGATCCGACTCGGGAACA+AGG | 0.540166 | 4.1:+82573037 | None:intergenic |
| TGATAAGTTGACTTATGTAA+AGG | 0.542179 | 4.1:-82575891 | MS.gene24955:intron |
| AGGAATACTTCAACTTCTAA+GGG | 0.545260 | 4.1:-82574241 | MS.gene24955:CDS |
| GAATAGTGCTTCTGTTTGGG+TGG | 0.545987 | 4.1:-82574362 | MS.gene24955:CDS |
| AACAATCATACGATCCGACT+CGG | 0.550433 | 4.1:+82573029 | None:intergenic |
| AGCGTCGCAATATCTCGGCT+TGG | 0.554674 | 4.1:-82573238 | MS.gene24955:CDS |
| AGCAAAGCCAGAGCTAGTCC+AGG | 0.555663 | 4.1:+82574079 | None:intergenic |
| ACAATCATACGATCCGACTC+GGG | 0.557650 | 4.1:+82573030 | None:intergenic |
| ATCTTTGTCAGCAGTTCCGG+TGG | 0.568296 | 4.1:+82574499 | None:intergenic |
| TCGGATCGTATGATTGTTGG+AGG | 0.568824 | 4.1:-82573024 | MS.gene24955:CDS |
| ATCCATAATGCAGCTAAACA+AGG | 0.569009 | 4.1:+82573298 | None:intergenic |
| TATTATGATTCCCATAACAT+AGG | 0.572039 | 4.1:+82572963 | None:intergenic |
| AATCATAATATCTGATCCAA+AGG | 0.575547 | 4.1:-82572950 | MS.gene24955:intron |
| TAAAGGGCCAAACAATGCAA+TGG | 0.580311 | 4.1:+82575928 | None:intergenic |
| CAGCTATTAGAACTGGACTC+TGG | 0.592489 | 4.1:-82573525 | MS.gene24955:CDS |
| TGGCTACTTTGACACAAAGC+AGG | 0.598656 | 4.1:+82574304 | None:intergenic |
| ATGCAGCTAAACAAGGGAGG+AGG | 0.607589 | 4.1:+82573305 | None:intergenic |
| AGTTTGCTTAATGTTACTGA+CGG | 0.612034 | 4.1:-82574214 | MS.gene24955:CDS |
| ACAGAACCTTGTTCCCGAGT+CGG | 0.615679 | 4.1:-82573043 | MS.gene24955:intron |
| GTGATAATCAATATCTGTGG+TGG | 0.616754 | 4.1:-82575088 | MS.gene24955:CDS |
| TCCATAATGCAGCTAAACAA+GGG | 0.621645 | 4.1:+82573299 | None:intergenic |
| GTAGCCAGAGGAGAATGGAA+AGG | 0.637469 | 4.1:-82574288 | MS.gene24955:CDS |
| TATATCCGAAGGCCAACCAC+CGG | 0.639455 | 4.1:-82574515 | MS.gene24955:CDS |
| AGGTTGTTAGTTATATCCGA+AGG | 0.647756 | 4.1:-82574526 | MS.gene24955:CDS |
| ACAGCAACTTTAGAATGGGA+AGG | 0.654116 | 4.1:-82573643 | MS.gene24955:CDS |
| CTTTGTGTCAAAGTAGCCAG+AGG | 0.676305 | 4.1:-82574300 | MS.gene24955:CDS |
| GTGGTGATAATCAATATCTG+TGG | 0.691366 | 4.1:-82575091 | MS.gene24955:CDS |
| ATAATGCAGCTAAACAAGGG+AGG | 0.711149 | 4.1:+82573302 | None:intergenic |
| GACAAGTAAGGAAACAACAG+TGG | 0.713411 | 4.1:+82575159 | None:intergenic |
| TATGTTATTGGAATAGCACG+AGG | 0.719824 | 4.1:-82573610 | MS.gene24955:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTTATAAAATATTAT+TGG | - | chr4.1:82573104-82573123 | MS.gene24955:intron | 0.0% |
| !! | ATACATATTTATGTATGATT+TGG | - | chr4.1:82575541-82575560 | MS.gene24955:intron | 15.0% |
| !! | TTTAACATCATATATATTGA+TGG | - | chr4.1:82575620-82575639 | MS.gene24955:intron | 15.0% |
| !!! | AATGTCTTCATTTTTTTTAT+TGG | - | chr4.1:82573646-82573665 | MS.gene24955:CDS | 15.0% |
| !!! | AATTGATAATAAAAACAATC+AGG | + | chr4.1:82575813-82575832 | None:intergenic | 15.0% |
| !!! | ATTGTTTTCATATAACTTAT+AGG | + | chr4.1:82575029-82575048 | None:intergenic | 15.0% |
| !! | ACAAAGAAAAGATACATATT+TGG | + | chr4.1:82575992-82576011 | None:intergenic | 20.0% |
| !! | AGATTTATACTGTGAAATAT+TGG | + | chr4.1:82574259-82574278 | None:intergenic | 20.0% |
| !! | ATTTCACATATGAAACAATA+CGG | + | chr4.1:82575736-82575755 | None:intergenic | 20.0% |
| !! | CAATATCTAATTCAAACAAT+AGG | + | chr4.1:82573956-82573975 | None:intergenic | 20.0% |
| !! | GTTTATATATGATCAGTATT+TGG | - | chr4.1:82572883-82572902 | MS.gene24955:intron | 20.0% |
| !!! | CATAATTCTTTTATATGTTG+CGG | - | chr4.1:82573251-82573270 | MS.gene24955:CDS | 20.0% |
| !!! | TACTAATCAATTTTCATTGA+AGG | + | chr4.1:82573886-82573905 | None:intergenic | 20.0% |
| ! | AAATGTCTATGTAAAGCATA+GGG | - | chr4.1:82574300-82574319 | MS.gene24955:CDS | 25.0% |
| ! | AATCATAATATCTGATCCAA+AGG | - | chr4.1:82575933-82575952 | MS.gene24955:CDS | 25.0% |
| ! | ATATATCTTTGAACTAATCG+AGG | - | chr4.1:82573136-82573155 | MS.gene24955:intron | 25.0% |
| ! | CTTTATAACAGAAACTAACA+AGG | + | chr4.1:82573605-82573624 | None:intergenic | 25.0% |
| ! | GAAAAGATACATATTTGGAT+TGG | + | chr4.1:82575987-82576006 | None:intergenic | 25.0% |
| ! | GATATTTGATATTGTAGAAC+AGG | + | chr4.1:82575339-82575358 | None:intergenic | 25.0% |
| ! | GATTTCAAAAATCTCTTATG+TGG | - | chr4.1:82574743-82574762 | MS.gene24955:intron | 25.0% |
| ! | TATATTCCTTTACATTACAC+AGG | + | chr4.1:82573329-82573348 | None:intergenic | 25.0% |
| ! | TATTATGATTCCCATAACAT+AGG | + | chr4.1:82575923-82575942 | None:intergenic | 25.0% |
| ! | TTTACAAGTCAGTTAGATAT+TGG | - | chr4.1:82574035-82574054 | MS.gene24955:intron | 25.0% |
| ! | TTTCACAGTATAAATCTTGA+AGG | - | chr4.1:82574262-82574281 | MS.gene24955:CDS | 25.0% |
| !! | AATCTGTCTTTTATTATTGC+TGG | - | chr4.1:82573699-82573718 | MS.gene24955:intron | 25.0% |
| !! | CTTTTTACATCTGTGTATAA+TGG | - | chr4.1:82574552-82574571 | MS.gene24955:intron | 25.0% |
| !! | GTAGAGATACCAATATATTT+TGG | + | chr4.1:82573024-82573043 | None:intergenic | 25.0% |
| !! | TGATAAGTTGACTTATGTAA+AGG | - | chr4.1:82572992-82573011 | MS.gene24955:CDS | 25.0% |
| !!! | ATGATGTTAAAATGCCATTT+TGG | + | chr4.1:82575611-82575630 | None:intergenic | 25.0% |
| !!! | CTCTACTTTTTATGCAAATA+CGG | - | chr4.1:82573038-82573057 | MS.gene24955:CDS | 25.0% |
| !!! | TCTTCATTTTTTTTATTGGC+AGG | - | chr4.1:82573650-82573669 | MS.gene24955:CDS | 25.0% |
| !!! | TTAGTTTTTAAACTCACCTT+TGG | + | chr4.1:82575952-82575971 | None:intergenic | 25.0% |
| AACCTCCTTAAAAATTCCTT+TGG | - | chr4.1:82574112-82574131 | MS.gene24955:CDS | 30.0% | |
| AAGGAATACTTCAACTTCTA+AGG | - | chr4.1:82574641-82574660 | MS.gene24955:intron | 30.0% | |
| AGGAATACTTCAACTTCTAA+GGG | - | chr4.1:82574642-82574661 | MS.gene24955:intron | 30.0% | |
| AGGTGTGATCCAAAATATAT+TGG | - | chr4.1:82573012-82573031 | MS.gene24955:CDS | 30.0% | |
| AGTTTGATTCTAAACATGTG+TGG | + | chr4.1:82573476-82573495 | None:intergenic | 30.0% | |
| ATATACTCTCAAATGCAAAG+AGG | + | chr4.1:82574156-82574175 | None:intergenic | 30.0% | |
| ATATTCATTCTCTCCATTTG+AGG | + | chr4.1:82573357-82573376 | None:intergenic | 30.0% | |
| ATGATGAATCAAAGTTCCTT+TGG | - | chr4.1:82575772-82575791 | MS.gene24955:intron | 30.0% | |
| ATTATGAAGCCAGTTATAAC+AGG | + | chr4.1:82574456-82574475 | None:intergenic | 30.0% | |
| CAAATATCAGCTATTAGAAC+TGG | - | chr4.1:82575351-82575370 | MS.gene24955:intron | 30.0% | |
| CAATCTTGATAGAAAGAGAA+TGG | - | chr4.1:82573847-82573866 | MS.gene24955:intron | 30.0% | |
| GAAATGTCTATGTAAAGCAT+AGG | - | chr4.1:82574299-82574318 | MS.gene24955:CDS | 30.0% | |
| GGAATATAAAGTTCCTCAAA+TGG | - | chr4.1:82573341-82573360 | MS.gene24955:intron | 30.0% | |
| TTATAGTCATTAAGTGACTC+TGG | - | chr4.1:82575109-82575128 | MS.gene24955:CDS | 30.0% | |
| TTCATTCTTAGCTTACAACA+AGG | + | chr4.1:82575170-82575189 | None:intergenic | 30.0% | |
| ! | AGTAGGATAAAAAGTGCAAT+AGG | + | chr4.1:82573440-82573459 | None:intergenic | 30.0% |
| ! | AGTTTGCTTAATGTTACTGA+CGG | - | chr4.1:82574669-82574688 | MS.gene24955:intron | 30.0% |
| !! | GAATAATCTAGAGTCTGTTT+TGG | - | chr4.1:82574857-82574876 | MS.gene24955:intron | 30.0% |
| AAAGTATGCTTTCATTGTGC+AGG | - | chr4.1:82574337-82574356 | MS.gene24955:CDS | 35.0% | |
| AAATCTCTTATGTGGATGCT+TGG | - | chr4.1:82574751-82574770 | MS.gene24955:intron | 35.0% | |
| AAGCAATCTTCGATAGCTAA+TGG | + | chr4.1:82574996-82575015 | None:intergenic | 35.0% | |
| AATTGCTAGATGGAAAAAGC+AGG | - | chr4.1:82574703-82574722 | MS.gene24955:intron | 35.0% | |
| AGGTTGTTAGTTATATCCGA+AGG | - | chr4.1:82574357-82574376 | MS.gene24955:CDS | 35.0% | |
| ATAGGCCAATAGATCCATAA+AGG | + | chr4.1:82575905-82575924 | None:intergenic | 35.0% | |
| ATCCATAATGCAGCTAAACA+AGG | + | chr4.1:82575588-82575607 | None:intergenic | 35.0% | |
| ATCTGTACTTCAACAAATGC+AGG | - | chr4.1:82575686-82575705 | MS.gene24955:intron | 35.0% | |
| ATGACTCTGTTGATGTTTCA+TGG | - | chr4.1:82574177-82574196 | MS.gene24955:CDS | 35.0% | |
| CAAAGATGAGTAGACAAGTA+AGG | + | chr4.1:82573739-82573758 | None:intergenic | 35.0% | |
| CAAATGCAGGCAAGAAATAA+TGG | - | chr4.1:82575699-82575718 | MS.gene24955:intron | 35.0% | |
| CAACCCAAGTTCCAATTAAA+GGG | + | chr4.1:82572974-82572993 | None:intergenic | 35.0% | |
| CATCACAAAGTGATCTAGAA+AGG | - | chr4.1:82574622-82574641 | MS.gene24955:intron | 35.0% | |
| CTGCTATAACTTTAGCACTT+TGG | - | chr4.1:82574499-82574518 | MS.gene24955:CDS | 35.0% | |
| GAATTCACTTCAGTCCTTTA+TGG | - | chr4.1:82575888-82575907 | MS.gene24955:intron | 35.0% | |
| GATACATCCTTGAAGCTAAA+AGG | - | chr4.1:82573399-82573418 | MS.gene24955:intron | 35.0% | |
| GATGTATCAATCAGACACAA+TGG | + | chr4.1:82573387-82573406 | None:intergenic | 35.0% | |
| GATTAGTATCAGTAGCTAGA+AGG | - | chr4.1:82573898-82573917 | MS.gene24955:intron | 35.0% | |
| GATTGTAAAGACAACCATGA+TGG | + | chr4.1:82574007-82574026 | None:intergenic | 35.0% | |
| GCTATTCCAATAACATATGC+AGG | + | chr4.1:82575270-82575289 | None:intergenic | 35.0% | |
| GGTATACCTGCATATGTTAT+TGG | - | chr4.1:82575261-82575280 | MS.gene24955:intron | 35.0% | |
| GTACAAACTCACAAATGATC+TGG | - | chr4.1:82575396-82575415 | MS.gene24955:intron | 35.0% | |
| GTGATAATCAATATCTGTGG+TGG | - | chr4.1:82573795-82573814 | MS.gene24955:intron | 35.0% | |
| GTGGTGATAATCAATATCTG+TGG | - | chr4.1:82573792-82573811 | MS.gene24955:intron | 35.0% | |
| GTGGTGATCAACATAAAAGT+AGG | + | chr4.1:82573457-82573476 | None:intergenic | 35.0% | |
| TATGTTATTGGAATAGCACG+AGG | - | chr4.1:82575273-82575292 | MS.gene24955:intron | 35.0% | |
| TCAACCCAAGTTCCAATTAA+AGG | + | chr4.1:82572975-82572994 | None:intergenic | 35.0% | |
| TCAGTCCTTTATGGATCTAT+TGG | - | chr4.1:82575897-82575916 | MS.gene24955:CDS | 35.0% | |
| TCATTCTGAACAGTGAGATA+TGG | - | chr4.1:82573513-82573532 | MS.gene24955:CDS | 35.0% | |
| TCCATAATGCAGCTAAACAA+GGG | + | chr4.1:82575587-82575606 | None:intergenic | 35.0% | |
| TCCTTTGGTCATAATCATCT+TGG | - | chr4.1:82575787-82575806 | MS.gene24955:intron | 35.0% | |
| TGACTCTGTTGATGTTTCAT+GGG | - | chr4.1:82574178-82574197 | MS.gene24955:CDS | 35.0% | |
| TTAGCTATCGAAGATTGCTT+AGG | - | chr4.1:82574996-82575015 | MS.gene24955:intron | 35.0% | |
| TTGGAATAGTGCTTCTGTTT+GGG | - | chr4.1:82574518-82574537 | MS.gene24955:CDS | 35.0% | |
| ! | ATCAATATCTGTGGTGGAAT+TGG | - | chr4.1:82573801-82573820 | MS.gene24955:intron | 35.0% |
| ! | CACAGTTTTCTTATTGCTTG+TGG | - | chr4.1:82573773-82573792 | MS.gene24955:intron | 35.0% |
| ! | GATCTATTGGCCTATGTTAT+GGG | - | chr4.1:82575910-82575929 | MS.gene24955:CDS | 35.0% |
| ! | GCAGGACAAAATTTTCTAAG+TGG | - | chr4.1:82574721-82574740 | MS.gene24955:intron | 35.0% |
| ! | GGACACCAAAGGAATTTTTA+AGG | + | chr4.1:82574120-82574139 | None:intergenic | 35.0% |
| ! | GTTACGTACGTTAGTTTCAA+AGG | - | chr4.1:82574078-82574097 | MS.gene24955:CDS | 35.0% |
| ! | TATGTATGATTTGGATGCAG+TGG | - | chr4.1:82575550-82575569 | MS.gene24955:intron | 35.0% |
| ! | TGATGACAGCAACTTTAGAA+TGG | - | chr4.1:82575235-82575254 | MS.gene24955:intron | 35.0% |
| ! | TTTGGAATAGTGCTTCTGTT+TGG | - | chr4.1:82574517-82574536 | MS.gene24955:CDS | 35.0% |
| !! | CACCAAAGGAATTTTTAAGG+AGG | + | chr4.1:82574117-82574136 | None:intergenic | 35.0% |
| !! | CATGTTTCTGAAGTTGTGTT+TGG | + | chr4.1:82575137-82575156 | None:intergenic | 35.0% |
| !! | GATGACAGCAACTTTAGAAT+GGG | - | chr4.1:82575236-82575255 | MS.gene24955:intron | 35.0% |
| !! | GTCTTCATTTTTCACCATCA+TGG | - | chr4.1:82573990-82574009 | MS.gene24955:intron | 35.0% |
| !!! | CAAGTATCCTTTTAGCTTCA+AGG | + | chr4.1:82573409-82573428 | None:intergenic | 35.0% |
| !!! | CTAATCGAGGTTTTAAATCG+CGG | - | chr4.1:82573149-82573168 | MS.gene24955:intron | 35.0% |
| !!! | TGCTATTTTTCACTGTACTC+AGG | - | chr4.1:82574823-82574842 | MS.gene24955:intron | 35.0% |
| AACAATCATACGATCCGACT+CGG | + | chr4.1:82575857-82575876 | None:intergenic | 40.0% | |
| ACTCTCAAATGCAAAGAGGT+TGG | + | chr4.1:82574152-82574171 | None:intergenic | 40.0% | |
| ATAATGCAGCTAAACAAGGG+AGG | + | chr4.1:82575584-82575603 | None:intergenic | 40.0% | |
| ATATGTTGCGGCCTAAATTG+CGG | - | chr4.1:82573263-82573282 | MS.gene24955:CDS | 40.0% | |
| CCAAAGCTGAAGCAAGTAAT+TGG | + | chr4.1:82575210-82575229 | None:intergenic | 40.0% | |
| CCAATTACTTGCTTCAGCTT+TGG | - | chr4.1:82575207-82575226 | MS.gene24955:CDS | 40.0% | |
| CTACTTGCACCTGTTATAAC+TGG | - | chr4.1:82574444-82574463 | MS.gene24955:CDS | 40.0% | |
| CTCTCACCTGTGTAATGTAA+AGG | - | chr4.1:82573320-82573339 | MS.gene24955:intron | 40.0% | |
| CTGCTGTATGCAGCAATATA+TGG | - | chr4.1:82572915-82572934 | MS.gene24955:intron | 40.0% | |
| GACAAGTAAGGAAACAACAG+TGG | + | chr4.1:82573727-82573746 | None:intergenic | 40.0% | |
| GACTCTGTTGATGTTTCATG+GGG | - | chr4.1:82574179-82574198 | MS.gene24955:CDS | 40.0% | |
| GATAGCACAGAATTGCTAGA+TGG | - | chr4.1:82574693-82574712 | MS.gene24955:intron | 40.0% | |
| GCATTGTTTGGCCCTTTAAT+TGG | - | chr4.1:82572960-82572979 | MS.gene24955:CDS | 40.0% | |
| GCCAAGATGATTATGACCAA+AGG | + | chr4.1:82575791-82575810 | None:intergenic | 40.0% | |
| GCTGCATTATGGATCCAAAA+TGG | - | chr4.1:82575594-82575613 | MS.gene24955:intron | 40.0% | |
| GGCTAGAATCTGTAAGTTAG+TGG | - | chr4.1:82574056-82574075 | MS.gene24955:intron | 40.0% | |
| TAAAGGGCCAAACAATGCAA+TGG | + | chr4.1:82572958-82572977 | None:intergenic | 40.0% | |
| TCTGCTTCCATTGCATTGTT+TGG | - | chr4.1:82572948-82572967 | MS.gene24955:intron | 40.0% | |
| TGGCCCTTTAATTGGAACTT+GGG | - | chr4.1:82572968-82572987 | MS.gene24955:CDS | 40.0% | |
| TTCATCTTTGTCAGCAGTTC+CGG | + | chr4.1:82574390-82574409 | None:intergenic | 40.0% | |
| TTGGCCCTTTAATTGGAACT+TGG | - | chr4.1:82572967-82572986 | MS.gene24955:CDS | 40.0% | |
| ! | ATTGGCAGGTTTTGCAATTG+TGG | - | chr4.1:82573664-82573683 | MS.gene24955:intron | 40.0% |
| ! | CGAGGAATAAGTGCTGTAAT+TGG | - | chr4.1:82575291-82575310 | MS.gene24955:intron | 40.0% |
| ! | GGATCTATTGGCCTATGTTA+TGG | - | chr4.1:82575909-82575928 | MS.gene24955:CDS | 40.0% |
| ! | TCCCTTGTTTAGCTGCATTA+TGG | - | chr4.1:82575583-82575602 | MS.gene24955:intron | 40.0% |
| ! | TGTCCAGGGTTTTCAAAAGT+GGG | + | chr4.1:82573294-82573313 | None:intergenic | 40.0% |
| ! | TTGTCCAGGGTTTTCAAAAG+TGG | + | chr4.1:82573295-82573314 | None:intergenic | 40.0% |
| !! | ACAGCAACTTTAGAATGGGA+AGG | - | chr4.1:82575240-82575259 | MS.gene24955:intron | 40.0% |
| !! | CAAAGAGGTTGGTGAGTAAA+GGG | + | chr4.1:82574141-82574160 | None:intergenic | 40.0% |
| AAAGCCTTTCCATTCTCCTC+TGG | + | chr4.1:82574602-82574621 | None:intergenic | 45.0% | |
| ACAATCATACGATCCGACTC+GGG | + | chr4.1:82575856-82575875 | None:intergenic | 45.0% | |
| ACTCACAGTCGCATTATGGT+TGG | - | chr4.1:82573223-82573242 | MS.gene24955:CDS | 45.0% | |
| ACTCTGGTCTATTTGGTCTC+AGG | - | chr4.1:82575374-82575393 | MS.gene24955:intron | 45.0% | |
| AGGTGAGAGATCATTTGTCC+AGG | + | chr4.1:82573309-82573328 | None:intergenic | 45.0% | |
| CAGCAAGAAGTTGTTCTTCC+TGG | - | chr4.1:82574786-82574805 | MS.gene24955:intron | 45.0% | |
| CAGCTATTAGAACTGGACTC+TGG | - | chr4.1:82575358-82575377 | MS.gene24955:intron | 45.0% | |
| CTCACAGTCGCATTATGGTT+GGG | - | chr4.1:82573224-82573243 | MS.gene24955:CDS | 45.0% | |
| CTTCTGTTTGGGTGGAGTAT+TGG | - | chr4.1:82574529-82574548 | MS.gene24955:intron | 45.0% | |
| CTTTGTGTCAAAGTAGCCAG+AGG | - | chr4.1:82574583-82574602 | MS.gene24955:intron | 45.0% | |
| GAACTGGACTCTGGTCTATT+TGG | - | chr4.1:82575367-82575386 | MS.gene24955:intron | 45.0% | |
| GAATAGTGCTTCTGTTTGGG+TGG | - | chr4.1:82574521-82574540 | MS.gene24955:CDS | 45.0% | |
| GAGTCGGATCGTATGATTGT+TGG | - | chr4.1:82575856-82575875 | MS.gene24955:intron | 45.0% | |
| GGTGAGAGATCATTTGTCCA+GGG | + | chr4.1:82573308-82573327 | None:intergenic | 45.0% | |
| TCAAAGTAGCCAGAGGAGAA+TGG | - | chr4.1:82574590-82574609 | MS.gene24955:intron | 45.0% | |
| TCACAGTCGCATTATGGTTG+GGG | - | chr4.1:82573225-82573244 | MS.gene24955:CDS | 45.0% | |
| TCGGATCGTATGATTGTTGG+AGG | - | chr4.1:82575859-82575878 | MS.gene24955:intron | 45.0% | |
| TGTGACTCACAGTCGCATTA+TGG | - | chr4.1:82573219-82573238 | MS.gene24955:CDS | 45.0% | |
| ! | GCAGGTTTTGCAATTGTGGT+TGG | - | chr4.1:82573668-82573687 | MS.gene24955:intron | 45.0% |
| ! | TGGCTACTTTGACACAAAGC+AGG | + | chr4.1:82574582-82574601 | None:intergenic | 45.0% |
| ! | TGGTAAGCGTCGCAATATCT+CGG | - | chr4.1:82575640-82575659 | MS.gene24955:intron | 45.0% |
| !! | GCAAAGAGGTTGGTGAGTAA+AGG | + | chr4.1:82574142-82574161 | None:intergenic | 45.0% |
| !! | TAGCCCACTTTTGAAAACCC+TGG | - | chr4.1:82573288-82573307 | MS.gene24955:CDS | 45.0% |
| ACAGAACCTTGTTCCCGAGT+CGG | - | chr4.1:82575840-82575859 | MS.gene24955:intron | 50.0% | |
| ATCTTTGTCAGCAGTTCCGG+TGG | + | chr4.1:82574387-82574406 | None:intergenic | 50.0% | |
| ATGCAGCTAAACAAGGGAGG+AGG | + | chr4.1:82575581-82575600 | None:intergenic | 50.0% | |
| GGTGAGTAAAGGGACACCAA+AGG | + | chr4.1:82574131-82574150 | None:intergenic | 50.0% | |
| GTAGCCAGAGGAGAATGGAA+AGG | - | chr4.1:82574595-82574614 | MS.gene24955:intron | 50.0% | |
| TATATCCGAAGGCCAACCAC+CGG | - | chr4.1:82574368-82574387 | MS.gene24955:CDS | 50.0% | |
| ! | AACAGGTGCAAGTAGCTTGC+AGG | + | chr4.1:82574439-82574458 | None:intergenic | 50.0% |
| ! | GGAGTGCTTTCAACTCTTGC+TGG | - | chr4.1:82573822-82573841 | MS.gene24955:intron | 50.0% |
| !! | AGTGGGCTAGACCGCAATTT+AGG | + | chr4.1:82573277-82573296 | None:intergenic | 50.0% |
| !! | CAATATCTCGGCTTGGACTG+TGG | - | chr4.1:82575652-82575671 | MS.gene24955:intron | 50.0% |
| !! | TGTTCTTCCTGGACTAGCTC+TGG | - | chr4.1:82574797-82574816 | MS.gene24955:intron | 50.0% |
| AGCAAAGCCAGAGCTAGTCC+AGG | + | chr4.1:82574807-82574826 | None:intergenic | 55.0% | |
| AGCGTCGCAATATCTCGGCT+TGG | - | chr4.1:82575645-82575664 | MS.gene24955:intron | 55.0% | |
| GCTGCATACAGCAGTGAGTC+TGG | + | chr4.1:82572909-82572928 | None:intergenic | 55.0% | |
| TTGTCAGCAGTTCCGGTGGT+TGG | + | chr4.1:82574383-82574402 | None:intergenic | 55.0% | |
| !! | TACGATCCGACTCGGGAACA+AGG | + | chr4.1:82575849-82575868 | None:intergenic | 55.0% |
| !! | CAGTTCCGGTGGTTGGCCTT+CGG | + | chr4.1:82574376-82574395 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 82572864 | 82576041 | 82572864 | ID=MS.gene24955 |
| chr4.1 | mRNA | 82572864 | 82576041 | 82572864 | ID=MS.gene24955.t1;Parent=MS.gene24955 |
| chr4.1 | exon | 82575892 | 82576041 | 82575892 | ID=MS.gene24955.t1.exon1;Parent=MS.gene24955.t1 |
| chr4.1 | CDS | 82575892 | 82576041 | 82575892 | ID=cds.MS.gene24955.t1;Parent=MS.gene24955.t1 |
| chr4.1 | exon | 82575037 | 82575233 | 82575037 | ID=MS.gene24955.t1.exon2;Parent=MS.gene24955.t1 |
| chr4.1 | CDS | 82575037 | 82575233 | 82575037 | ID=cds.MS.gene24955.t1;Parent=MS.gene24955.t1 |
| chr4.1 | exon | 82574061 | 82574546 | 82574061 | ID=MS.gene24955.t1.exon3;Parent=MS.gene24955.t1 |
| chr4.1 | CDS | 82574061 | 82574546 | 82574061 | ID=cds.MS.gene24955.t1;Parent=MS.gene24955.t1 |
| chr4.1 | exon | 82573510 | 82573681 | 82573510 | ID=MS.gene24955.t1.exon4;Parent=MS.gene24955.t1 |
| chr4.1 | CDS | 82573510 | 82573681 | 82573510 | ID=cds.MS.gene24955.t1;Parent=MS.gene24955.t1 |
| chr4.1 | exon | 82573198 | 82573335 | 82573198 | ID=MS.gene24955.t1.exon5;Parent=MS.gene24955.t1 |
| chr4.1 | CDS | 82573198 | 82573335 | 82573198 | ID=cds.MS.gene24955.t1;Parent=MS.gene24955.t1 |
| chr4.1 | exon | 82572951 | 82573061 | 82572951 | ID=MS.gene24955.t1.exon6;Parent=MS.gene24955.t1 |
| chr4.1 | CDS | 82572951 | 82573061 | 82572951 | ID=cds.MS.gene24955.t1;Parent=MS.gene24955.t1 |
| chr4.1 | exon | 82572864 | 82572866 | 82572864 | ID=MS.gene24955.t1.exon7;Parent=MS.gene24955.t1 |
| chr4.1 | CDS | 82572864 | 82572866 | 82572864 | ID=cds.MS.gene24955.t1;Parent=MS.gene24955.t1 |
| Gene Sequence |
| Protein sequence |
