AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050871


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050871.t1 MTR_7g113530 97.653 213 5 0 10 222 38 250 3.21e-157 439
MS.gene050871.t1 MTR_2g083920 29.612 206 122 7 23 217 72 265 1.35e-15 75.5
MS.gene050871.t1 MTR_2g083920 32.099 162 98 5 23 178 72 227 2.43e-15 75.5
MS.gene050871.t1 MTR_4g080350 29.012 162 103 5 23 178 74 229 1.40e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050871.t1 AT3G05345 69.767 215 60 4 9 222 33 243 5.06e-107 311
MS.gene050871.t1 AT2G42750 32.716 162 97 5 23 178 78 233 4.72e-15 75.1

Find 72 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCATCACAGAGAATTATTT+TGG 0.134244 7.4:+3240480 MS.gene050871:CDS
AACATGCTGGGTTGAAAATT+TGG 0.174458 7.4:-3240915 None:intergenic
TCGAAAAGCGGCTTTAATTT+CGG 0.279196 7.4:-3239357 None:intergenic
TTTGGTGTTTGGTTTCTCTA+TGG 0.303094 7.4:+3241517 MS.gene050871:CDS
TTCACATTTGTCTCTTCAAC+TGG 0.307988 7.4:+3240190 MS.gene050871:CDS
ACTTTGACATAATCTTCCTT+AGG 0.356859 7.4:-3241422 None:intergenic
GTTATTCTCAAACTTAGCTT+TGG 0.385126 7.4:-3240867 None:intergenic
CTACGGATGAATTTGGTGTT+TGG 0.396165 7.4:+3241506 MS.gene050871:CDS
TGTGGTTGACTTTGGGATCA+AGG 0.398210 7.4:+3241460 MS.gene050871:CDS
GTGTGTGCTACGGATGAATT+TGG 0.398410 7.4:+3241499 MS.gene050871:CDS
TGCCTCAGCTGATGTATCAT+AGG 0.402393 7.4:-3240822 None:intergenic
GGTTCACTTCACCCCTCCTA+TGG 0.409915 7.4:+3239105 MS.gene050871:CDS
ATGGTTCTGTGGTTGACTTT+GGG 0.411324 7.4:+3241453 MS.gene050871:CDS
CATCTCTGTTGAGGTCTGGA+TGG 0.429052 7.4:-3239485 None:intergenic
ATTTCGGCGGCTGAGCAGTT+AGG 0.433399 7.4:-3239341 None:intergenic
CCAAAATAATTCTCTGTGAT+GGG 0.435014 7.4:-3240480 None:intergenic
GATGGTTCTGTGGTTGACTT+TGG 0.437474 7.4:+3241452 MS.gene050871:CDS
ACATAATGAATGCAACTTCT+CGG 0.437627 7.4:-3240454 None:intergenic
TCCAAAATAATTCTCTGTGA+TGG 0.443344 7.4:-3240481 None:intergenic
CTTTGACATAATCTTCCTTA+GGG 0.465160 7.4:-3241421 None:intergenic
GTTAATGAGTTTCTTTGTGT+CGG 0.474240 7.4:+3239874 MS.gene050871:CDS
GTCCAACAGCACACTGAACT+TGG 0.476520 7.4:-3240426 None:intergenic
AATTTGTGATGGTGTGTAGT+TGG 0.477410 7.4:-3239690 None:intergenic
AACAACTGTTTATAGGTCAT+GGG 0.479720 7.4:+3240395 MS.gene050871:intron
CATAATGAATGCAACTTCTC+GGG 0.481674 7.4:-3240453 None:intergenic
ACGTAATACAACCACAATGA+TGG 0.482587 7.4:-3241555 None:intergenic
TCCTCTGCTTACACCGTCCT+CGG 0.486253 7.4:+3239311 MS.gene050871:CDS
TTTCAACCCAGCATGTTGAC+TGG 0.504611 7.4:+3240921 MS.gene050871:CDS
TACCAAGTTCAGTGTGCTGT+TGG 0.507441 7.4:+3240424 MS.gene050871:CDS
ATCTTCCTTAGGGTTACTCC+AGG 0.507761 7.4:-3241411 None:intergenic
TTCACACTCTGGTCTGTCAA+AGG 0.509595 7.4:-3239836 None:intergenic
TCGACTTACTTTCCCATAGG+AGG 0.511597 7.4:-3239118 None:intergenic
GACGGTGTAAGCAGAGGAAG+TGG 0.512906 7.4:-3239306 None:intergenic
TCACACTCTGGTCTGTCAAA+GGG 0.522302 7.4:-3239835 None:intergenic
TACGTTTCAATAATTTGTGA+TGG 0.522555 7.4:-3239701 None:intergenic
CGACTTACTTTCCCATAGGA+GGG 0.524856 7.4:-3239117 None:intergenic
CCGTGTAATTCAAGCATACC+AGG 0.525324 7.4:+3239539 MS.gene050871:CDS
TTTCAGAATACTGAGGTGTA+AGG 0.526250 7.4:-3241053 None:intergenic
AGATCAAAAGCTTCACACTC+TGG 0.531042 7.4:-3239847 None:intergenic
CGGCGGCTGAGCAGTTAGGT+TGG 0.531621 7.4:-3239337 None:intergenic
AATTGCAGAGGCAGAGAAGA+TGG 0.533070 7.4:+3239275 MS.gene050871:intron
GCTAAAACCAGTCAACATGC+TGG 0.539656 7.4:-3240928 None:intergenic
GCCTCAGCTGATGTATCATA+GGG 0.543724 7.4:-3240821 None:intergenic
TGACTCTTATTCCATCATTG+TGG 0.547489 7.4:+3241544 MS.gene050871:CDS
ACCATGCTAATACTGCTGCC+TGG 0.549143 7.4:+3241393 MS.gene050871:CDS
ACTTCGACTTACTTTCCCAT+AGG 0.554474 7.4:-3239121 None:intergenic
GACTTACTTTCCCATAGGAG+GGG 0.555773 7.4:-3239116 None:intergenic
GTTCACTTCACCCCTCCTAT+GGG 0.564229 7.4:+3239106 MS.gene050871:CDS
TATGTCAAAGTCAATTGTGA+TGG 0.565976 7.4:+3241434 MS.gene050871:CDS
GAGTTTCTTTGTGTCGGCAA+AGG 0.566077 7.4:+3239880 MS.gene050871:CDS
CTGTGGTGGTGTGTGTGCTA+CGG 0.586058 7.4:+3241489 MS.gene050871:CDS
CTAAAACCAGTCAACATGCT+GGG 0.591004 7.4:-3240927 None:intergenic
CAAAATAATTCTCTGTGATG+GGG 0.597740 7.4:-3240479 None:intergenic
TGCTGCCTGGAGTAACCCTA+AGG 0.606377 7.4:+3241406 MS.gene050871:CDS
TCCAGGCAGCAGTATTAGCA+TGG 0.618759 7.4:-3241394 None:intergenic
ACAGCACGTGCATCTTCTCA+AGG 0.621543 7.4:+3240214 MS.gene050871:CDS
TGATACTTTGGATCGAAAAG+CGG 0.622876 7.4:-3239369 None:intergenic
GTTAGGTTGGACTCCGAGGA+CGG 0.622942 7.4:-3239324 None:intergenic
AGTCAATTGTGATGGTTCTG+TGG 0.623540 7.4:+3241442 MS.gene050871:CDS
TCCGAGGACGGTGTAAGCAG+AGG 0.625114 7.4:-3239312 None:intergenic
CCTGGTATGCTTGAATTACA+CGG 0.626987 7.4:-3239539 None:intergenic
ACAACTGTTTATAGGTCATG+GGG 0.627093 7.4:+3240396 MS.gene050871:intron
AGCAGTTAGGTTGGACTCCG+AGG 0.631176 7.4:-3239328 None:intergenic
ATGAGGTGCTCTTTCCACAC+AGG 0.664251 7.4:-3240164 None:intergenic
ACCCTATGATACATCAGCTG+AGG 0.667271 7.4:+3240820 MS.gene050871:CDS
TAAGCAGAGGAAGTGGACAG+AGG 0.671934 7.4:-3239299 None:intergenic
TTACATGTTTCAGAATACTG+AGG 0.676400 7.4:-3241060 None:intergenic
AAAAGCGGCTTTAATTTCGG+CGG 0.695406 7.4:-3239354 None:intergenic
GAGACAAATGTGAAAGCATG+AGG 0.702751 7.4:-3240181 None:intergenic
GATCAAGGCATATACTGTGG+TGG 0.711117 7.4:+3241475 MS.gene050871:CDS
TGGGATCAAGGCATATACTG+TGG 0.712148 7.4:+3241472 MS.gene050871:CDS
AGCTTGTTCAAATTCCTGTG+TGG 0.759817 7.4:+3240150 MS.gene050871:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTAAAAAAATAAAAATTGT+AGG - chr7.4:3240545-3240564 None:intergenic 10.0%
!!! ACAATTTTTATTTTTTTACT+TGG + chr7.4:3240545-3240564 MS.gene050871:intron 10.0%
!! AAAGATAATATATTGACAAA+GGG - chr7.4:3240600-3240619 None:intergenic 15.0%
!! ATCTTTCTTATAAAACTAAA+AGG + chr7.4:3240614-3240633 MS.gene050871:intron 15.0%
!! ATGATAGAAATAGATAAATA+GGG - chr7.4:3240664-3240683 None:intergenic 15.0%
!! TATGATAGAAATAGATAAAT+AGG - chr7.4:3240665-3240684 None:intergenic 15.0%
!!! ATTTTTATTTTTTTACTTGG+TGG + chr7.4:3240548-3240567 MS.gene050871:intron 15.0%
!!! TATAACATATTATTACCTTT+TGG + chr7.4:3240711-3240730 MS.gene050871:intron 15.0%
!!! TTCTCTTTAATTTATTACTT+AGG + chr7.4:3239452-3239471 MS.gene050871:intron 15.0%
!!! TTTTTATTTTTTTACTTGGT+GGG + chr7.4:3240549-3240568 MS.gene050871:intron 15.0%
!! AAAGGAAATAAGAAATCAAA+TGG - chr7.4:3240773-3240792 None:intergenic 20.0%
!! GAAAGATAATATATTGACAA+AGG - chr7.4:3240601-3240620 None:intergenic 20.0%
!! TAATGAATTTCTCAAAATGA+AGG - chr7.4:3240267-3240286 None:intergenic 20.0%
!! TTAAACTCATCAATGTAAAA+TGG - chr7.4:3240121-3240140 None:intergenic 20.0%
!!! CTTATTTTAAGATTTTGCAA+CGG + chr7.4:3241126-3241145 MS.gene050871:intron 20.0%
! AAACATTGTATGATTCCAAA+AGG - chr7.4:3240729-3240748 None:intergenic 25.0%
! AATGATTGATGTTGATACTT+TGG - chr7.4:3239384-3239403 None:intergenic 25.0%
! AATTTCTCAAAATGAAGGAA+GGG - chr7.4:3240262-3240281 None:intergenic 25.0%
! ACAATTTAGACCACATATAT+CGG + chr7.4:3239969-3239988 MS.gene050871:intron 25.0%
! ACATAATTTCATGTCATGTA+AGG - chr7.4:3239939-3239958 None:intergenic 25.0%
! ATAAATAGGGAAATTAAGCA+TGG - chr7.4:3240651-3240670 None:intergenic 25.0%
! ATACTGAAACATCAACAAAA+AGG - chr7.4:3240791-3240810 None:intergenic 25.0%
! CCGTAAATTTCAAAACAATA+CGG - chr7.4:3239750-3239769 None:intergenic 25.0%
! GCAGCTCATAAAAAATTTAT+TGG - chr7.4:3241024-3241043 None:intergenic 25.0%
! TATCTTCAACAACTGTTTAT+AGG + chr7.4:3240388-3240407 MS.gene050871:intron 25.0%
! TGAATTGAAGAGAATGAAAA+TGG - chr7.4:3239420-3239439 None:intergenic 25.0%
!! TACGTTTCAATAATTTGTGA+TGG - chr7.4:3239704-3239723 None:intergenic 25.0%
!!! ATTTTTTATGAGCTGCTTAT+AGG + chr7.4:3241028-3241047 MS.gene050871:intron 25.0%
!!! CCGTATTGTTTTGAAATTTA+CGG + chr7.4:3239747-3239766 MS.gene050871:intron 25.0%
!!! GAAAATTTGGTTTTCTTCTT+TGG - chr7.4:3240905-3240924 None:intergenic 25.0%
AAAAGTCATGTAGTGAGATT+TGG - chr7.4:3241245-3241264 None:intergenic 30.0%
AACAACTGTTTATAGGTCAT+GGG + chr7.4:3240395-3240414 MS.gene050871:intron 30.0%
AAGAATGAGTGAGTTTAAGA+AGG - chr7.4:3239580-3239599 None:intergenic 30.0%
ACATAATGAATGCAACTTCT+CGG - chr7.4:3240457-3240476 None:intergenic 30.0%
ACTTTGACATAATCTTCCTT+AGG - chr7.4:3241425-3241444 None:intergenic 30.0%
CAAAATAATTCTCTGTGATG+GGG - chr7.4:3240482-3240501 None:intergenic 30.0%
CCAAAATAATTCTCTGTGAT+GGG - chr7.4:3240483-3240502 None:intergenic 30.0%
CTTTGACATAATCTTCCTTA+GGG - chr7.4:3241424-3241443 None:intergenic 30.0%
GAATTTCTCAAAATGAAGGA+AGG - chr7.4:3240263-3240282 None:intergenic 30.0%
GTTAATGAGTTTCTTTGTGT+CGG + chr7.4:3239874-3239893 MS.gene050871:CDS 30.0%
GTTATTCTCAAACTTAGCTT+TGG - chr7.4:3240870-3240889 None:intergenic 30.0%
GTTTAAATCCTTTAGTCAGA+GGG + chr7.4:3241325-3241344 MS.gene050871:intron 30.0%
TATGTCAAAGTCAATTGTGA+TGG + chr7.4:3241434-3241453 MS.gene050871:CDS 30.0%
TCCAAAATAATTCTCTGTGA+TGG - chr7.4:3240484-3240503 None:intergenic 30.0%
TCTTTCAGTGAATGAATCAA+GGG + chr7.4:3241176-3241195 MS.gene050871:intron 30.0%
TGTAAGCTACTTACTACAAT+CGG + chr7.4:3241078-3241097 MS.gene050871:intron 30.0%
TTACATGTTTCAGAATACTG+AGG - chr7.4:3241063-3241082 None:intergenic 30.0%
TTCTTTCAGTGAATGAATCA+AGG + chr7.4:3241175-3241194 MS.gene050871:intron 30.0%
! AATTTTTCGTCATTTCCACA+AGG - chr7.4:3241268-3241287 None:intergenic 30.0%
! ATTTCTAATTTTTCCTGCCA+TGG + chr7.4:3241301-3241320 MS.gene050871:intron 30.0%
! TTCTTTAAAGACACAGACAA+AGG - chr7.4:3239242-3239261 None:intergenic 30.0%
! TTTCATTTTCATCTCTGTTG+AGG - chr7.4:3239497-3239516 None:intergenic 30.0%
!!! ATCACAGAGAATTATTTTGG+AGG + chr7.4:3240483-3240502 MS.gene050871:CDS 30.0%
!!! TTTTAAGATTTTGCAACGGA+TGG + chr7.4:3241130-3241149 MS.gene050871:intron 30.0%
AAAACAAGAACGAATTGCAG+AGG + chr7.4:3239263-3239282 MS.gene050871:intron 35.0%
ACAACTGTTTATAGGTCATG+GGG + chr7.4:3240396-3240415 MS.gene050871:intron 35.0%
ACGTAATACAACCACAATGA+TGG - chr7.4:3241558-3241577 None:intergenic 35.0%
ACTAAAGGATTTAAACGCCA+TGG - chr7.4:3241321-3241340 None:intergenic 35.0%
ACTATGCTGTATATGATGTG+TGG - chr7.4:3239617-3239636 None:intergenic 35.0%
CAACAACTGTTTATAGGTCA+TGG + chr7.4:3240394-3240413 MS.gene050871:intron 35.0%
CATAATGAATGCAACTTCTC+GGG - chr7.4:3240456-3240475 None:intergenic 35.0%
CGTTTAAATCCTTTAGTCAG+AGG + chr7.4:3241324-3241343 MS.gene050871:intron 35.0%
CTCAGTGCTATCTATAGTTT+GGG - chr7.4:3240972-3240991 None:intergenic 35.0%
GTAAGCTACTTACTACAATC+GGG + chr7.4:3241079-3241098 MS.gene050871:intron 35.0%
TCAGTGCTATCTATAGTTTG+GGG - chr7.4:3240971-3240990 None:intergenic 35.0%
TCTCAGTGCTATCTATAGTT+TGG - chr7.4:3240973-3240992 None:intergenic 35.0%
TGACTCTTATTCCATCATTG+TGG + chr7.4:3241544-3241563 MS.gene050871:CDS 35.0%
TGATACTTTGGATCGAAAAG+CGG - chr7.4:3239372-3239391 None:intergenic 35.0%
TTCACATTTGTCTCTTCAAC+TGG + chr7.4:3240190-3240209 MS.gene050871:CDS 35.0%
TTTCAGAATACTGAGGTGTA+AGG - chr7.4:3241056-3241075 None:intergenic 35.0%
! AACATGCTGGGTTGAAAATT+TGG - chr7.4:3240918-3240937 None:intergenic 35.0%
! AATTTGTGATGGTGTGTAGT+TGG - chr7.4:3239693-3239712 None:intergenic 35.0%
! CCCATCACAGAGAATTATTT+TGG + chr7.4:3240480-3240499 MS.gene050871:CDS 35.0%
! TATGATGTGTGGTAGTGAAT+AGG - chr7.4:3239606-3239625 None:intergenic 35.0%
! TCGAAAAGCGGCTTTAATTT+CGG - chr7.4:3239360-3239379 None:intergenic 35.0%
! TCTGCAGTAAAAAAGCATGA+AGG - chr7.4:3239664-3239683 None:intergenic 35.0%
!! ACAGTTGGTCTTACCATAAT+GGG + chr7.4:3239149-3239168 MS.gene050871:intron 35.0%
!! TTTGGTGTTTGGTTTCTCTA+TGG + chr7.4:3241517-3241536 MS.gene050871:CDS 35.0%
!!! TCTTCTTTGGCTTTTGGTAT+CGG - chr7.4:3240892-3240911 None:intergenic 35.0%
!!! TGCTGACTTTTCACTTTTCA+GGG + chr7.4:3239801-3239820 MS.gene050871:intron 35.0%
!!! TGGTTTTCTTCTTTGGCTTT+TGG - chr7.4:3240898-3240917 None:intergenic 35.0%
ACAATGTCTCAACGTCACTT+GGG + chr7.4:3240068-3240087 MS.gene050871:intron 40.0%
ACACAGACAAAGGAAAAGTG+CGG - chr7.4:3239232-3239251 None:intergenic 40.0%
ACACCTTTAATCTGCAAGTG+TGG + chr7.4:3240026-3240045 MS.gene050871:intron 40.0%
ACTTCGACTTACTTTCCCAT+AGG - chr7.4:3239124-3239143 None:intergenic 40.0%
AGATCAAAAGCTTCACACTC+TGG - chr7.4:3239850-3239869 None:intergenic 40.0%
ATGGGAAAGTAAGTCGAAGT+TGG + chr7.4:3239124-3239143 MS.gene050871:intron 40.0%
CCTGGTATGCTTGAATTACA+CGG - chr7.4:3239542-3239561 None:intergenic 40.0%
CTAAAACCAGTCAACATGCT+GGG - chr7.4:3240930-3240949 None:intergenic 40.0%
CTGAAAAGTGAAAAGTCAGC+AGG - chr7.4:3239802-3239821 None:intergenic 40.0%
TACAATGTCTCAACGTCACT+TGG + chr7.4:3240067-3240086 MS.gene050871:intron 40.0%
! AAAAGCGGCTTTAATTTCGG+CGG - chr7.4:3239357-3239376 None:intergenic 40.0%
! AGCTTGTTCAAATTCCTGTG+TGG + chr7.4:3240150-3240169 MS.gene050871:intron 40.0%
! AGTCAATTGTGATGGTTCTG+TGG + chr7.4:3241442-3241461 MS.gene050871:CDS 40.0%
! ATGGTTCTGTGGTTGACTTT+GGG + chr7.4:3241453-3241472 MS.gene050871:CDS 40.0%
! ATTAAAGGTGTGTCCAGTGT+AGG - chr7.4:3240017-3240036 None:intergenic 40.0%
! CACTACATGACTTTTCCTTG+TGG + chr7.4:3241250-3241269 MS.gene050871:intron 40.0%
! CTGTGTTTGATAACACTTGC+AGG + chr7.4:3241353-3241372 MS.gene050871:intron 40.0%
! GAGACAAATGTGAAAGCATG+AGG - chr7.4:3240184-3240203 None:intergenic 40.0%
! TAAGATTTTGCAACGGATGG+CGG + chr7.4:3241133-3241152 MS.gene050871:intron 40.0%
! TGTTTGATAACACTTGCAGG+TGG + chr7.4:3241356-3241375 MS.gene050871:intron 40.0%
! TTACCATAATGGGATCGTTC+AGG + chr7.4:3239159-3239178 MS.gene050871:intron 40.0%
! TTTTCATCTCTGTTGAGGTC+TGG - chr7.4:3239492-3239511 None:intergenic 40.0%
!! CACAGTTGGTCTTACCATAA+TGG + chr7.4:3239148-3239167 MS.gene050871:intron 40.0%
!! CTACGGATGAATTTGGTGTT+TGG + chr7.4:3241506-3241525 MS.gene050871:CDS 40.0%
!! TTTTGGAGGAGCTACTTAAC+AGG + chr7.4:3240497-3240516 MS.gene050871:CDS 40.0%
!!! CTGCTGACTTTTCACTTTTC+AGG + chr7.4:3239800-3239819 MS.gene050871:intron 40.0%
!!! TTTTTTTACTTGGTGGGCTG+TGG + chr7.4:3240555-3240574 MS.gene050871:intron 40.0%
AAGGATTTAAACGCCATGGC+AGG - chr7.4:3241317-3241336 None:intergenic 45.0%
AAGTCGAAGTTGGACACAGT+TGG + chr7.4:3239134-3239153 MS.gene050871:intron 45.0%
AATTGCAGAGGCAGAGAAGA+TGG + chr7.4:3239275-3239294 MS.gene050871:intron 45.0%
ACCCTATGATACATCAGCTG+AGG + chr7.4:3240820-3240839 MS.gene050871:CDS 45.0%
AGTTTGGGGAGTGAAGACAT+GGG - chr7.4:3240957-3240976 None:intergenic 45.0%
ATCTTCCTTAGGGTTACTCC+AGG - chr7.4:3241414-3241433 None:intergenic 45.0%
CAACCTGAACGATCCCATTA+TGG - chr7.4:3239165-3239184 None:intergenic 45.0%
CAAGCATACCAGGTACTACT+TGG + chr7.4:3239549-3239568 MS.gene050871:intron 45.0%
CCGTGTAATTCAAGCATACC+AGG + chr7.4:3239539-3239558 MS.gene050871:CDS 45.0%
CGACTTACTTTCCCATAGGA+GGG - chr7.4:3239120-3239139 None:intergenic 45.0%
GACTTACTTTCCCATAGGAG+GGG - chr7.4:3239119-3239138 None:intergenic 45.0%
GATCAAGGCATATACTGTGG+TGG + chr7.4:3241475-3241494 MS.gene050871:CDS 45.0%
GATTGCTGATGAGACAGTCA+TGG + chr7.4:3240991-3241010 MS.gene050871:intron 45.0%
GCCTCAGCTGATGTATCATA+GGG - chr7.4:3240824-3240843 None:intergenic 45.0%
GCTAAAACCAGTCAACATGC+TGG - chr7.4:3240931-3240950 None:intergenic 45.0%
GCTCCACACTTGCAGATTAA+AGG - chr7.4:3240032-3240051 None:intergenic 45.0%
GTGTGTGCTACGGATGAATT+TGG + chr7.4:3241499-3241518 MS.gene050871:CDS 45.0%
TACCAAGTTCAGTGTGCTGT+TGG + chr7.4:3240424-3240443 MS.gene050871:CDS 45.0%
TAGACCACATATATCGGTGC+AGG + chr7.4:3239975-3239994 MS.gene050871:intron 45.0%
TAGTTTGGGGAGTGAAGACA+TGG - chr7.4:3240958-3240977 None:intergenic 45.0%
TCACACTCTGGTCTGTCAAA+GGG - chr7.4:3239838-3239857 None:intergenic 45.0%
TCGACTTACTTTCCCATAGG+AGG - chr7.4:3239121-3239140 None:intergenic 45.0%
TGCCTCAGCTGATGTATCAT+AGG - chr7.4:3240825-3240844 None:intergenic 45.0%
TGGGATCAAGGCATATACTG+TGG + chr7.4:3241472-3241491 MS.gene050871:CDS 45.0%
TTCACACTCTGGTCTGTCAA+AGG - chr7.4:3239839-3239858 None:intergenic 45.0%
TTTCAACCCAGCATGTTGAC+TGG + chr7.4:3240921-3240940 MS.gene050871:CDS 45.0%
! AAGATTTTGCAACGGATGGC+GGG + chr7.4:3241134-3241153 MS.gene050871:intron 45.0%
! GAGTTTCTTTGTGTCGGCAA+AGG + chr7.4:3239880-3239899 MS.gene050871:CDS 45.0%
! GATGGTTCTGTGGTTGACTT+TGG + chr7.4:3241452-3241471 MS.gene050871:CDS 45.0%
! TTCTTTGTGTCGGCAAAGGT+AGG + chr7.4:3239884-3239903 MS.gene050871:intron 45.0%
!! AGGAAGTACCAAGTAGTACC+TGG - chr7.4:3239560-3239579 None:intergenic 45.0%
!! TGTGGTTGACTTTGGGATCA+AGG + chr7.4:3241460-3241479 MS.gene050871:CDS 45.0%
ACAGCACGTGCATCTTCTCA+AGG + chr7.4:3240214-3240233 MS.gene050871:CDS 50.0%
ACCATGCTAATACTGCTGCC+TGG + chr7.4:3241393-3241412 MS.gene050871:CDS 50.0%
ACGTGAATGCGTGATACTGC+AGG + chr7.4:3241215-3241234 MS.gene050871:intron 50.0%
CAGCTACTCCCTCTGACTAA+AGG - chr7.4:3241336-3241355 None:intergenic 50.0%
CATCTCTGTTGAGGTCTGGA+TGG - chr7.4:3239488-3239507 None:intergenic 50.0%
CTGCATGCAATGTCCTACAC+TGG + chr7.4:3240001-3240020 MS.gene050871:intron 50.0%
GTCCAACAGCACACTGAACT+TGG - chr7.4:3240429-3240448 None:intergenic 50.0%
GTTCACTTCACCCCTCCTAT+GGG + chr7.4:3239106-3239125 MS.gene050871:CDS 50.0%
TAAGCAGAGGAAGTGGACAG+AGG - chr7.4:3239302-3239321 None:intergenic 50.0%
TCCAGGCAGCAGTATTAGCA+TGG - chr7.4:3241397-3241416 None:intergenic 50.0%
! AGATTTTGCAACGGATGGCG+GGG + chr7.4:3241135-3241154 MS.gene050871:intron 50.0%
! ATGAGGTGCTCTTTCCACAC+AGG - chr7.4:3240167-3240186 None:intergenic 50.0%
! GTGTCCTGCACCGATATATG+TGG - chr7.4:3239982-3240001 None:intergenic 50.0%
ATTTCGGCGGCTGAGCAGTT+AGG - chr7.4:3239344-3239363 None:intergenic 55.0%
GACGGTGTAAGCAGAGGAAG+TGG - chr7.4:3239309-3239328 None:intergenic 55.0%
GGTTCACTTCACCCCTCCTA+TGG + chr7.4:3239105-3239124 MS.gene050871:CDS 55.0%
TCCTCTGCTTACACCGTCCT+CGG + chr7.4:3239311-3239330 MS.gene050871:CDS 55.0%
TGCTGCCTGGAGTAACCCTA+AGG + chr7.4:3241406-3241425 MS.gene050871:CDS 55.0%
! CTGTGGTGGTGTGTGTGCTA+CGG + chr7.4:3241489-3241508 MS.gene050871:CDS 55.0%
!! AGCAGTTAGGTTGGACTCCG+AGG - chr7.4:3239331-3239350 None:intergenic 55.0%
!! GTTAGGTTGGACTCCGAGGA+CGG - chr7.4:3239327-3239346 None:intergenic 55.0%
TCCGAGGACGGTGTAAGCAG+AGG - chr7.4:3239315-3239334 None:intergenic 60.0%
CGGCGGCTGAGCAGTTAGGT+TGG - chr7.4:3239340-3239359 None:intergenic 65.0%
!! TGCAACGGATGGCGGGGAAG+TGG + chr7.4:3241141-3241160 MS.gene050871:intron 65.0%
!! ACGGATGGCGGGGAAGTGGC+AGG + chr7.4:3241145-3241164 MS.gene050871:intron 70.0%
!! CGGATGGCGGGGAAGTGGCA+GGG + chr7.4:3241146-3241165 MS.gene050871:intron 70.0%
!! GATGGCGGGGAAGTGGCAGG+GGG + chr7.4:3241148-3241167 MS.gene050871:intron 70.0%
!! GGATGGCGGGGAAGTGGCAG+GGG + chr7.4:3241147-3241166 MS.gene050871:intron 70.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 3239103 3241580 3239103 ID=MS.gene050871
chr7.4 mRNA 3239103 3241580 3239103 ID=MS.gene050871.t1;Parent=MS.gene050871
chr7.4 exon 3239103 3239131 3239103 ID=MS.gene050871.t1.exon1;Parent=MS.gene050871.t1
chr7.4 CDS 3239103 3239131 3239103 ID=cds.MS.gene050871.t1;Parent=MS.gene050871.t1
chr7.4 exon 3239283 3239385 3239283 ID=MS.gene050871.t1.exon2;Parent=MS.gene050871.t1
chr7.4 CDS 3239283 3239385 3239283 ID=cds.MS.gene050871.t1;Parent=MS.gene050871.t1
chr7.4 exon 3239474 3239560 3239474 ID=MS.gene050871.t1.exon3;Parent=MS.gene050871.t1
chr7.4 CDS 3239474 3239560 3239474 ID=cds.MS.gene050871.t1;Parent=MS.gene050871.t1
chr7.4 exon 3239683 3239720 3239683 ID=MS.gene050871.t1.exon4;Parent=MS.gene050871.t1
chr7.4 CDS 3239683 3239720 3239683 ID=cds.MS.gene050871.t1;Parent=MS.gene050871.t1
chr7.4 exon 3239822 3239901 3239822 ID=MS.gene050871.t1.exon5;Parent=MS.gene050871.t1
chr7.4 CDS 3239822 3239901 3239822 ID=cds.MS.gene050871.t1;Parent=MS.gene050871.t1
chr7.4 exon 3240152 3240235 3240152 ID=MS.gene050871.t1.exon6;Parent=MS.gene050871.t1
chr7.4 CDS 3240152 3240235 3240152 ID=cds.MS.gene050871.t1;Parent=MS.gene050871.t1
chr7.4 exon 3240410 3240518 3240410 ID=MS.gene050871.t1.exon7;Parent=MS.gene050871.t1
chr7.4 CDS 3240410 3240518 3240410 ID=cds.MS.gene050871.t1;Parent=MS.gene050871.t1
chr7.4 exon 3240808 3240942 3240808 ID=MS.gene050871.t1.exon8;Parent=MS.gene050871.t1
chr7.4 CDS 3240808 3240942 3240808 ID=cds.MS.gene050871.t1;Parent=MS.gene050871.t1
chr7.4 exon 3241050 3241078 3241050 ID=MS.gene050871.t1.exon9;Parent=MS.gene050871.t1
chr7.4 CDS 3241050 3241078 3241050 ID=cds.MS.gene050871.t1;Parent=MS.gene050871.t1
chr7.4 exon 3241375 3241580 3241375 ID=MS.gene050871.t1.exon10;Parent=MS.gene050871.t1
chr7.4 CDS 3241375 3241580 3241375 ID=cds.MS.gene050871.t1;Parent=MS.gene050871.t1
Gene Sequence

>MS.gene050871

ATGGTTCACTTCACCCCTCCTATGGGAAAGTAAGTCGAAGTTGGACACAGTTGGTCTTACCATAATGGGATCGTTCAGGTTGTTTAGCTTCAACTTAACAACAACAACAACTTCTATGTTTGTAAACCGCACTTTTCCTTTGTCTGTGTCTTTAAAGAATAAAACAAGAACGAATTGCAGAGGCAGAGAAGATGGTCCTCTGTCCACTTCCTCTGCTTACACCGTCCTCGGAGTCCAACCTAACTGCTCAGCCGCCGAAATTAAAGCCGCTTTTCGATCCAAAGTATCAACATCAATCATTGAATATTTATTCACCATTTTCATTCTCTTCAATTCAATTCAAGTTTCTTTCTCTTTAATTTATTACTTAGGTAAAACAGTTCCATCCAGACCTCAACAGAGATGAAAATGAAACATATTCTGATGCTATGATTCGCCGTGTAATTCAAGCATACCAGGTACTACTTGGTACTTCCTTCTTAAACTCACTCATTCTTTTTCCTATTCACTACCACACATCATATACAGCATAGTAAAGTGTAATTAGTTCATTTTTAACCTTCATGCTTTTTTACTGCAGATACTATCCAACTACACACCATCACAAATTATTGAAACGTAAACTATATGTTCTTTATTCAACTCCGTATTGTTTTGAAATTTACGGTATGCATTCATTCTCTTACAGTTACAATGCCTGCTGACTTTTCACTTTTCAGGGAGTGCTTAGATCCCTTTGACAGACCAGAGTGTGAAGCTTTTGATCTTTTCGTTAATGAGTTTCTTTGTGTCGGCAAAGGTAGGAGTGTGAAGCATCAACACATACACAGACACCTTACATGACATGAAATTATGTAGAGCTCGTAACAATTTAGACCACATATATCGGTGCAGGACACTGCATGCAATGTCCTACACTGGACACACCTTTAATCTGCAAGTGTGGAGCATGCATACATACATATACAATGTCTCAACGTCACTTGGGATGAACAATTTTTATGCTTTTACTTTTCCATTTTACATTGATGAGTTTAAAATCTATGCAGCTTGTTCAAATTCCTGTGTGGAAAGAGCACCTCATGCTTTCACATTTGTCTCTTCAACTGGAACAGCACGTGCATCTTCTCAAGGTTAATTTGTTTTATATATTGTTCCCTTCCTTCATTTTGAGAAATTCATTAATTAAGAATGACATATTGAACTAGATAACTTCGCTTGTTTTAGAAGAGTGCATGTACTCTGCAAATGACATTCTTTTTAATGATTTATTTATGAATACTGCTATCTTCAACAACTGTTTATAGGTCATGGGGAAGACTACCAAGTTCAGTGTGCTGTTGGACAATGCCCGAGAAGTTGCATTCATTATGTAACCCCATCACAGAGAATTATTTTGGAGGAGCTACTTAACAGGTAACATTAACAGCGTTACTCATCCTACAATTTTTATTTTTTTACTTGGTGGGCTGTGGAACAGTTTATCAAATTAATCCCTTTGTCAATATATTATCTTTCTTATAAAACTAAAAGGATACAATACAACCATGCTTAATTTCCCTATTTATCTATTTCTATCATATACTAGCATGCTTTTTTACTTAATCATATAACATATTATTACCTTTTGGAATCATACAATGTTTTTAGAGTTTAACAAGTTCATTCCATTTGATTTCTTATTTCCTTTTTGTTGATGTTTCAGTATAATAGATGCACCCTATGATACATCAGCTGAGGCAGACTTGCTCTATTCACTTATAACCAAAGCTAAGTTTGAGAATAACCGATACCAAAAGCCAAAGAAGAAAACCAAATTTTCAACCCAGCATGTTGACTGGTTTTAGCGTTCCCATGTCTTCACTCCCCAAACTATAGATAGCACTGAGATTGCTGATGAGACAGTCATGGTTCTCAGCCAATAAATTTTTTATGAGCTGCTTATAGGTGCCTTACACCTCAGTATTCTGAAACATGTAAGCTACTTACTACAATCGGGCAATTTTTGTTTCATTTTGTACATCTTATTTTAAGATTTTGCAACGGATGGCGGGGAAGTGGCAGGGGGTTAGTTCTTTCAGTGAATGAATCAAGGGTCTAGATTCACTGTCTACGTGAATGCGTGATACTGCAGGTAATCCAAATCTCACTACATGACTTTTCCTTGTGGAAATGACGAAAAATTGCAAGTCTATATGATTTCTAATTTTTCCTGCCATGGCGTTTAAATCCTTTAGTCAGAGGGAGTAGCTGTGTTTGATAACACTTGCAGGTGGTGAATATATCATTGACCATGCTAATACTGCTGCCTGGAGTAACCCTAAGGAAGATTATGTCAAAGTCAATTGTGATGGTTCTGTGGTTGACTTTGGGATCAAGGCATATACTGTGGTGGTGTGTGTGCTACGGATGAATTTGGTGTTTGGTTTCTCTATGGCTCTTGACTCTTATTCCATCATTGTGGTTGTATTACGTTAA

Protein sequence

>MS.gene050871.t1

MVHFTPPMGKGREDGPLSTSSAYTVLGVQPNCSAAEIKAAFRSKVKQFHPDLNRDENETYSDAMIRRVIQAYQILSNYTPSQIIETECLDPFDRPECEAFDLFVNEFLCVGKACSNSCVERAPHAFTFVSSTGTARASSQGHGEDYQVQCAVGQCPRSCIHYVTPSQRIILEELLNSIIDAPYDTSAEADLLYSLITKAKFENNRYQKPKKKTKFSTQHVDWCLTPQYSETCGEYIIDHANTAAWSNPKEDYVKVNCDGSVVDFGIKAYTVVVCVLRMNLVFGFSMALDSYSIIVVVLR