Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25271.t1 | XP_003628618.1 | 99.2 | 395 | 2 | 1 | 1 | 394 | 1 | 395 | 1.60E-223 | 785 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25271.t1 | P52902 | 82.8 | 377 | 65 | 0 | 18 | 394 | 21 | 397 | 1.9e-185 | 649.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25271.t1 | G7LEP9 | 99.2 | 395 | 2 | 1 | 1 | 394 | 1 | 395 | 1.1e-223 | 785.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene25271 | MS.gene049277 | PPI |
MS.gene25271 | MS.gene06396 | PPI |
MS.gene25271 | MS.gene074258 | PPI |
MS.gene25271 | MS.gene054963 | PPI |
MS.gene25271 | MS.gene013304 | PPI |
MS.gene25271 | MS.gene76034 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25271.t1 | MTR_8g062670 | 99.241 | 395 | 2 | 1 | 1 | 394 | 1 | 395 | 0.0 | 818 |
MS.gene25271.t1 | MTR_5g036600 | 83.246 | 382 | 62 | 1 | 13 | 394 | 16 | 395 | 0.0 | 654 |
MS.gene25271.t1 | MTR_8g024310 | 35.867 | 421 | 225 | 9 | 6 | 388 | 3 | 416 | 2.00e-81 | 256 |
MS.gene25271.t1 | MTR_3g088845 | 29.231 | 325 | 220 | 4 | 57 | 375 | 31 | 351 | 1.84e-42 | 153 |
MS.gene25271.t1 | MTR_3g088845 | 29.231 | 325 | 220 | 4 | 57 | 375 | 119 | 439 | 7.54e-42 | 153 |
MS.gene25271.t1 | MTR_3g096390 | 28.994 | 338 | 218 | 7 | 49 | 373 | 90 | 418 | 1.46e-40 | 149 |
MS.gene25271.t1 | MTR_3g096390 | 28.063 | 253 | 160 | 7 | 49 | 288 | 90 | 333 | 3.76e-24 | 102 |
MS.gene25271.t1 | MTR_3g088845 | 25.683 | 183 | 129 | 2 | 57 | 236 | 119 | 297 | 4.73e-17 | 82.0 |
MS.gene25271.t1 | MTR_8g075470 | 27.074 | 229 | 139 | 7 | 99 | 311 | 61 | 277 | 1.06e-14 | 75.1 |
MS.gene25271.t1 | MTR_7g118200 | 38.095 | 84 | 47 | 3 | 223 | 301 | 5 | 88 | 1.99e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25271.t1 | AT1G24180 | 77.834 | 397 | 81 | 4 | 1 | 394 | 1 | 393 | 0.0 | 647 |
MS.gene25271.t1 | AT1G59900 | 76.650 | 394 | 87 | 3 | 1 | 394 | 1 | 389 | 0.0 | 645 |
MS.gene25271.t1 | AT1G59900 | 76.842 | 380 | 83 | 3 | 1 | 380 | 1 | 375 | 0.0 | 625 |
MS.gene25271.t1 | AT1G01090 | 37.565 | 386 | 220 | 9 | 20 | 388 | 36 | 417 | 6.25e-77 | 244 |
MS.gene25271.t1 | AT5G09300 | 28.399 | 331 | 217 | 6 | 54 | 373 | 49 | 370 | 7.61e-42 | 152 |
MS.gene25271.t1 | AT5G09300 | 28.399 | 331 | 217 | 6 | 54 | 373 | 120 | 441 | 2.37e-41 | 152 |
MS.gene25271.t1 | AT1G21400 | 31.148 | 305 | 196 | 5 | 99 | 394 | 72 | 371 | 2.02e-40 | 147 |
MS.gene25271.t1 | AT1G21400 | 31.148 | 305 | 196 | 5 | 99 | 394 | 72 | 371 | 2.02e-40 | 147 |
MS.gene25271.t1 | AT1G21400 | 31.148 | 305 | 196 | 5 | 99 | 394 | 89 | 388 | 3.67e-40 | 147 |
MS.gene25271.t1 | AT1G21400 | 31.148 | 305 | 196 | 5 | 99 | 394 | 164 | 463 | 5.15e-40 | 148 |
MS.gene25271.t1 | AT1G21400 | 31.148 | 305 | 196 | 5 | 99 | 394 | 216 | 515 | 6.15e-40 | 149 |
MS.gene25271.t1 | AT5G09300 | 27.935 | 247 | 158 | 6 | 54 | 289 | 120 | 357 | 5.71e-25 | 105 |
MS.gene25271.t1 | AT5G34780 | 34.043 | 188 | 109 | 5 | 194 | 373 | 31 | 211 | 1.03e-21 | 95.9 |
MS.gene25271.t1 | AT5G09300 | 27.419 | 186 | 128 | 2 | 54 | 236 | 120 | 301 | 7.03e-20 | 90.5 |
MS.gene25271.t1 | AT1G21400 | 28.378 | 148 | 103 | 1 | 99 | 243 | 216 | 363 | 8.57e-17 | 81.6 |
Find 113 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGGGATCTTCCTGCTATTT+TGG | 0.127087 | 8.3:+39997484 | MS.gene25271:CDS |
TTTACCAATGTATATGTTAA+AGG | 0.140584 | 8.3:+40004710 | MS.gene25271:CDS |
CTTGGAGTTGGATTGGCTTT+TGG | 0.188485 | 8.3:+39997362 | MS.gene25271:CDS |
TTCTACTGAAAAGGAATTAA+AGG | 0.202760 | 8.3:+40003415 | MS.gene25271:CDS |
TCGTATTGAGGAAAGGAAAT+AGG | 0.238108 | 8.3:-39996883 | None:intergenic |
CTCTTAATATCGCCGCTCTT+TGG | 0.242363 | 8.3:+39997465 | MS.gene25271:CDS |
TGGTGATGGTGCTGCTAATC+AGG | 0.297061 | 8.3:+39997427 | MS.gene25271:CDS |
GGTTTCGACGGTTAGGGTTT+CGG | 0.303370 | 8.3:-39996931 | None:intergenic |
AAGGAAAGATGGGTGTTCTA+AGG | 0.319128 | 8.3:+39997259 | MS.gene25271:CDS |
GGATGGAGGTTTCGACGGTT+AGG | 0.337250 | 8.3:-39996938 | None:intergenic |
AATGTATATGTTAAAGGCTT+AGG | 0.339639 | 8.3:+40004716 | MS.gene25271:CDS |
TCTTAATATCGCCGCTCTTT+GGG | 0.347641 | 8.3:+39997466 | MS.gene25271:CDS |
AGCTTTCTTACTCTCTCAAT+TGG | 0.359233 | 8.3:-40003374 | None:intergenic |
GCAGAAACCGCGGATGAGTT+TGG | 0.369250 | 8.3:-39997090 | None:intergenic |
ATTTACTTTGTACAGGTAGA+TGG | 0.383832 | 8.3:+39999190 | MS.gene25271:intron |
ATGTATATGTTAAAGGCTTA+GGG | 0.394667 | 8.3:+40004717 | MS.gene25271:CDS |
GTTGGAGCTCAGATTCCTCT+TGG | 0.398329 | 8.3:+39997344 | MS.gene25271:CDS |
GATTCCTCTTGGAGTTGGAT+TGG | 0.401098 | 8.3:+39997355 | MS.gene25271:CDS |
TGGCCACTCCATGTCTGATC+CGG | 0.401479 | 8.3:+40003207 | MS.gene25271:CDS |
CTTGTAATACGCAGGACTTT+TGG | 0.405631 | 8.3:-39997647 | None:intergenic |
TAATGTCCAGATTCTTGAAA+TGG | 0.407066 | 8.3:+40003168 | MS.gene25271:intron |
TATGGTGGACATGGGATTGT+TGG | 0.408224 | 8.3:+39997326 | MS.gene25271:CDS |
TGGAAGGTGGTTCGCAGTTG+TGG | 0.409089 | 8.3:-39996971 | None:intergenic |
ATATGGTTATACCTTTGCTT+TGG | 0.412121 | 8.3:-40004555 | None:intergenic |
GCTCAGATTCCTCTTGGAGT+TGG | 0.414889 | 8.3:+39997350 | MS.gene25271:CDS |
CTTTGTACAGGTAGATGGTA+TGG | 0.416779 | 8.3:+39999195 | MS.gene25271:intron |
CGTATTGAGGAAAGGAAATA+GGG | 0.419858 | 8.3:-39996882 | None:intergenic |
GATGGAGGTTTCGACGGTTA+GGG | 0.431680 | 8.3:-39996937 | None:intergenic |
GGTTAGGGTTTCGGTGGAAG+AGG | 0.446559 | 8.3:-39996922 | None:intergenic |
TGAGTTCGGAGGCGGTGGTT+TGG | 0.454095 | 8.3:-39997001 | None:intergenic |
GTGGTTTGGACGGTGGTGGA+AGG | 0.454242 | 8.3:-39996987 | None:intergenic |
AAGCGTGGAGATTATGCTCC+TGG | 0.457396 | 8.3:+39997667 | MS.gene25271:CDS |
TTCGGAGGCGGTGGTTTGGA+CGG | 0.457880 | 8.3:-39996997 | None:intergenic |
AGATTATGCTCCTGGATTGA+AGG | 0.459060 | 8.3:+39997675 | MS.gene25271:CDS |
CTGCCATCTCTACGACGGTC+AGG | 0.461075 | 8.3:+39997109 | MS.gene25271:CDS |
ATCTTTCTAACCTTCAATCC+AGG | 0.464660 | 8.3:-39997685 | None:intergenic |
TTCGGTGGAAGAGGAAGAAA+TGG | 0.466080 | 8.3:-39996913 | None:intergenic |
GGAAGGTGGTTCGCAGTTGT+GGG | 0.469466 | 8.3:-39996970 | None:intergenic |
GGCGGTGGTTTGGACGGTGG+TGG | 0.470193 | 8.3:-39996991 | None:intergenic |
TACAAAGCAAAAGTAACATT+GGG | 0.474957 | 8.3:-39997404 | None:intergenic |
CGATTCTCATCCTCTCAATT+CGG | 0.478801 | 8.3:+39996843 | MS.gene25271:CDS |
TCACGACATTTCTACTGAAA+AGG | 0.484619 | 8.3:+40003406 | MS.gene25271:CDS |
CAGAGGTGGCACCCTAATTG+AGG | 0.485594 | 8.3:+39997217 | MS.gene25271:CDS |
GAATTGATGGGAAGGAAAGA+TGG | 0.489679 | 8.3:+39997248 | MS.gene25271:CDS |
TTATACCTTTGCTTTGGCAA+TGG | 0.489696 | 8.3:-40004549 | None:intergenic |
GAGAGTAAGAAAGCTGGTAT+TGG | 0.491864 | 8.3:+40003382 | MS.gene25271:CDS |
CGCAGTTGTGGGAAGTGAAA+GGG | 0.491966 | 8.3:-39996959 | None:intergenic |
ATTTGTGTAACAGATGGAAT+GGG | 0.492493 | 8.3:+39997604 | MS.gene25271:intron |
AAGGAACATGCTTTGAAGAA+TGG | 0.493732 | 8.3:+39999253 | MS.gene25271:CDS |
GGACATGAGTTCGGAGGCGG+TGG | 0.495990 | 8.3:-39997006 | None:intergenic |
TGAGATTAGCGGTGTTAGAC+AGG | 0.497125 | 8.3:+40003252 | MS.gene25271:CDS |
GATTTGTGTAACAGATGGAA+TGG | 0.503553 | 8.3:+39997603 | MS.gene25271:intron |
CGCGTGCGGTATGTGCTGCC+CGG | 0.506711 | 8.3:-40003226 | None:intergenic |
AGGAAAGATGGGTGTTCTAA+GGG | 0.508469 | 8.3:+39997260 | MS.gene25271:CDS |
AATGGAACGGTGTCGTATTG+AGG | 0.512155 | 8.3:-39996895 | None:intergenic |
GAGAACCATGTCGTTGAAGA+AGG | 0.516045 | 8.3:-39997027 | None:intergenic |
ACATTGGTAAATAGATCAGA+TGG | 0.517521 | 8.3:-40004698 | None:intergenic |
GGCCACTCCATGTCTGATCC+GGG | 0.519101 | 8.3:+40003208 | MS.gene25271:CDS |
TTCTCACAAACCAAAATAGC+AGG | 0.519315 | 8.3:-39997494 | None:intergenic |
GTAAATAGATCAGATGGGTC+TGG | 0.522363 | 8.3:-40004692 | None:intergenic |
TGCAGGCATGTGGTGCTGAT+AGG | 0.523890 | 8.3:+40005047 | MS.gene25271:intron |
GTTGAAGAAGGACATGAGTT+CGG | 0.527595 | 8.3:-39997015 | None:intergenic |
GGTCAGGAAGCCGTTGCTGT+TGG | 0.530115 | 8.3:+39997125 | MS.gene25271:CDS |
GTTTGGACGGTGGTGGAAGG+TGG | 0.531937 | 8.3:-39996984 | None:intergenic |
ATACAAAGCAAAAGTAACAT+TGG | 0.535697 | 8.3:-39997405 | None:intergenic |
GATGGGTGTTCTAAGGGAAA+AGG | 0.535962 | 8.3:+39997266 | MS.gene25271:CDS |
CATGGTTCTCATGCGCCGTA+TGG | 0.536252 | 8.3:+39997040 | MS.gene25271:CDS |
GGAAGCCGTTGCTGTTGGAA+TGG | 0.541582 | 8.3:+39997130 | MS.gene25271:CDS |
TCGCAGTTGTGGGAAGTGAA+AGG | 0.544039 | 8.3:-39996960 | None:intergenic |
GTGGGAAGTGAAAGGGATGG+AGG | 0.555368 | 8.3:-39996952 | None:intergenic |
TGTTAAAGGCTTAGGGGTCG+AGG | 0.557159 | 8.3:+40004724 | MS.gene25271:CDS |
GGAGGCGGTGGTTTGGACGG+TGG | 0.567848 | 8.3:-39996994 | None:intergenic |
TAAGCCTTTAACATATACAT+TGG | 0.568328 | 8.3:-40004714 | None:intergenic |
CTTCCTGACCGTCGTAGAGA+TGG | 0.569109 | 8.3:-39997112 | None:intergenic |
TGCTTTGAAGAATGGTCCCC+TGG | 0.570115 | 8.3:+39999261 | MS.gene25271:CDS |
AAAGGAAATAGGGTTTGAGA+AGG | 0.572428 | 8.3:-39996872 | None:intergenic |
CATGTCCTTCTTCAACGACA+TGG | 0.574969 | 8.3:+39997022 | MS.gene25271:CDS |
GAAGGACATGAGTTCGGAGG+CGG | 0.576411 | 8.3:-39997009 | None:intergenic |
AAGGAAATAGGGTTTGAGAA+GGG | 0.576534 | 8.3:-39996871 | None:intergenic |
AGCTTCCATTCCAACAGCAA+CGG | 0.577026 | 8.3:-39997135 | None:intergenic |
GAAAGGGATGGAGGTTTCGA+CGG | 0.581945 | 8.3:-39996943 | None:intergenic |
GATCAGACATGGAGTGGCCA+TGG | 0.584534 | 8.3:-40003204 | None:intergenic |
GAAATAGGGTTTGAGAAGGG+TGG | 0.590452 | 8.3:-39996868 | None:intergenic |
TTCGACGGTTAGGGTTTCGG+TGG | 0.592878 | 8.3:-39996928 | None:intergenic |
AATTGATGGGAAGGAAAGAT+GGG | 0.593176 | 8.3:+39997249 | MS.gene25271:CDS |
TGTGCTGCCCGGATCAGACA+TGG | 0.594191 | 8.3:-40003215 | None:intergenic |
CGAAGCCATTGCCAAAGCAA+AGG | 0.598171 | 8.3:+40004544 | MS.gene25271:CDS |
AATTGAGAGAGTAAGAAAGC+TGG | 0.598823 | 8.3:+40003376 | MS.gene25271:CDS |
TGCCCGGATCAGACATGGAG+TGG | 0.600111 | 8.3:-40003210 | None:intergenic |
GCAAGCTTGCAAATTTGCAA+AGG | 0.602106 | 8.3:+39999234 | MS.gene25271:CDS |
GGTGATGGTGCTGCTAATCA+GGG | 0.617038 | 8.3:+39997428 | MS.gene25271:CDS |
GGGTGTTCTAAGGGAAAAGG+TGG | 0.623922 | 8.3:+39997269 | MS.gene25271:CDS |
AGTCAGCAGCGATCTCCATA+CGG | 0.627581 | 8.3:-39997055 | None:intergenic |
AACGGTGTCGTATTGAGGAA+AGG | 0.627993 | 8.3:-39996890 | None:intergenic |
AGTACAGTGATCACGATAAG+CGG | 0.629898 | 8.3:-39997186 | None:intergenic |
CGCACGCGTGATGAGATTAG+CGG | 0.635779 | 8.3:+40003241 | MS.gene25271:CDS |
CGCTAATCTCATCACGCGTG+CGG | 0.639390 | 8.3:-40003240 | None:intergenic |
AAGGGTGGATCCGAATTGAG+AGG | 0.642462 | 8.3:-39996853 | None:intergenic |
ATGGACACTTACAGATACCA+TGG | 0.644817 | 8.3:+40003187 | MS.gene25271:CDS |
AGTCCTGCGTATTACAAGCG+TGG | 0.644994 | 8.3:+39997652 | MS.gene25271:CDS |
AAAGCCAATCCAACTCCAAG+AGG | 0.648911 | 8.3:-39997359 | None:intergenic |
CGTAGAGATGGCAGAAACCG+CGG | 0.660828 | 8.3:-39997100 | None:intergenic |
CATTGGTAAATAGATCAGAT+GGG | 0.666454 | 8.3:-40004697 | None:intergenic |
TACAAAGCCAAACTCATCCG+CGG | 0.667143 | 8.3:+39997083 | MS.gene25271:CDS |
TGTATATGTTAAAGGCTTAG+GGG | 0.667239 | 8.3:+40004718 | MS.gene25271:CDS |
ATGGAATGGGGACTGCTGAG+TGG | 0.670807 | 8.3:+39997617 | MS.gene25271:CDS |
TGGAAGAGGAAGAAATGGAA+CGG | 0.671358 | 8.3:-39996908 | None:intergenic |
TCTCCACGCTTGTAATACGC+AGG | 0.672536 | 8.3:-39997655 | None:intergenic |
AGCAGGAAGATCCCAAAGAG+CGG | 0.675016 | 8.3:-39997477 | None:intergenic |
GAAGAAGGACATGAGTTCGG+AGG | 0.678757 | 8.3:-39997012 | None:intergenic |
GTTGTGGGAAGTGAAAGGGA+TGG | 0.697878 | 8.3:-39996955 | None:intergenic |
GGTTTCTGCCATCTCTACGA+CGG | 0.718050 | 8.3:+39997104 | MS.gene25271:CDS |
TTTGTGTAACAGATGGAATG+GGG | 0.720617 | 8.3:+39997605 | MS.gene25271:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 39996831 | 40005096 | 39996831 | ID=MS.gene25271 |
chr8.3 | mRNA | 39996831 | 40005096 | 39996831 | ID=MS.gene25271.t1;Parent=MS.gene25271 |
chr8.3 | exon | 39996831 | 39997524 | 39996831 | ID=MS.gene25271.t1.exon1;Parent=MS.gene25271.t1 |
chr8.3 | CDS | 39996831 | 39997524 | 39996831 | ID=cds.MS.gene25271.t1;Parent=MS.gene25271.t1 |
chr8.3 | exon | 39997617 | 39997696 | 39997617 | ID=MS.gene25271.t1.exon2;Parent=MS.gene25271.t1 |
chr8.3 | CDS | 39997617 | 39997696 | 39997617 | ID=cds.MS.gene25271.t1;Parent=MS.gene25271.t1 |
chr8.3 | exon | 39999205 | 39999282 | 39999205 | ID=MS.gene25271.t1.exon3;Parent=MS.gene25271.t1 |
chr8.3 | CDS | 39999205 | 39999282 | 39999205 | ID=cds.MS.gene25271.t1;Parent=MS.gene25271.t1 |
chr8.3 | exon | 40003178 | 40003273 | 40003178 | ID=MS.gene25271.t1.exon4;Parent=MS.gene25271.t1 |
chr8.3 | CDS | 40003178 | 40003273 | 40003178 | ID=cds.MS.gene25271.t1;Parent=MS.gene25271.t1 |
chr8.3 | exon | 40003365 | 40003436 | 40003365 | ID=MS.gene25271.t1.exon5;Parent=MS.gene25271.t1 |
chr8.3 | CDS | 40003365 | 40003436 | 40003365 | ID=cds.MS.gene25271.t1;Parent=MS.gene25271.t1 |
chr8.3 | exon | 40004512 | 40004565 | 40004512 | ID=MS.gene25271.t1.exon6;Parent=MS.gene25271.t1 |
chr8.3 | CDS | 40004512 | 40004565 | 40004512 | ID=cds.MS.gene25271.t1;Parent=MS.gene25271.t1 |
chr8.3 | exon | 40004680 | 40004745 | 40004680 | ID=MS.gene25271.t1.exon7;Parent=MS.gene25271.t1 |
chr8.3 | CDS | 40004680 | 40004745 | 40004680 | ID=cds.MS.gene25271.t1;Parent=MS.gene25271.t1 |
chr8.3 | exon | 40005052 | 40005096 | 40005052 | ID=MS.gene25271.t1.exon8;Parent=MS.gene25271.t1 |
chr8.3 | CDS | 40005052 | 40005096 | 40005052 | ID=cds.MS.gene25271.t1;Parent=MS.gene25271.t1 |
Gene Sequence |
Protein sequence |