AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene054963


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054963.t1 MTR_3g096390 95.495 444 18 1 1 442 6 449 0.0 891
MS.gene054963.t1 MTR_3g096390 94.801 327 15 1 1 325 6 332 0.0 650
MS.gene054963.t1 MTR_3g088845 62.931 464 150 5 1 442 5 468 0.0 615
MS.gene054963.t1 MTR_3g088845 70.263 380 111 1 65 442 1 380 0.0 586
MS.gene054963.t1 MTR_3g088845 71.849 238 65 1 44 279 68 305 4.46e-127 371
MS.gene054963.t1 MTR_8g075470 54.237 354 132 7 95 442 36 365 2.29e-122 360
MS.gene054963.t1 MTR_8g062670 29.167 336 218 6 85 411 50 374 3.09e-41 151
MS.gene054963.t1 MTR_5g036600 28.808 302 201 6 114 411 83 374 2.55e-36 138
MS.gene054963.t1 MTR_8g024310 26.140 329 233 3 94 414 76 402 1.06e-34 134
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054963.t1 AT5G09300 70.361 415 120 2 31 442 58 472 0.0 630
MS.gene054963.t1 AT5G09300 72.911 395 105 1 50 442 7 401 0.0 629
MS.gene054963.t1 AT1G21400 68.750 400 123 1 45 442 73 472 0.0 596
MS.gene054963.t1 AT1G21400 69.620 395 118 1 50 442 130 524 0.0 595
MS.gene054963.t1 AT1G21400 69.367 395 119 1 50 442 3 397 0.0 592
MS.gene054963.t1 AT1G21400 70.526 380 110 1 65 442 1 380 0.0 577
MS.gene054963.t1 AT1G21400 70.526 380 110 1 65 442 1 380 0.0 577
MS.gene054963.t1 AT5G09300 74.497 298 73 2 31 325 58 355 3.54e-164 466
MS.gene054963.t1 AT5G09300 73.518 253 64 2 31 280 58 310 3.81e-134 390
MS.gene054963.t1 AT1G21400 71.121 232 65 1 50 279 130 361 4.05e-121 357
MS.gene054963.t1 AT5G34780 73.057 193 52 0 225 417 25 217 3.92e-103 311
MS.gene054963.t1 AT1G59900 27.852 298 209 3 114 411 77 368 3.90e-40 148
MS.gene054963.t1 AT1G59900 28.674 279 196 2 133 411 93 368 5.80e-40 147
MS.gene054963.t1 AT1G24180 26.471 340 237 6 96 429 60 392 2.91e-37 140
MS.gene054963.t1 AT1G01090 24.695 328 238 3 94 414 78 403 1.39e-33 131

Find 110 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGTGGTGGGTGGTGAAATT+AGG 0.225113 3.1:+76721375 None:intergenic
TCAGCCATTTCTCCTGTTCA+TGG 0.273435 3.1:+76718543 None:intergenic
AGGCAGATGCCAGCCCATTA+TGG 0.274205 3.1:-76720282 MS.gene054963:CDS
GATATTGTGCTTAAACTATA+TGG 0.280847 3.1:+76718475 None:intergenic
TTCCTTAAAGATGGACAAAA+AGG 0.292427 3.1:-76720028 MS.gene054963:CDS
ACAAAATCAGTCCCGAAAAT+TGG 0.305302 3.1:+76721195 None:intergenic
TAAGAAGAAGTTGTTAAAGT+TGG 0.319173 3.1:+76721416 None:intergenic
AGTTAAAGCGGCGTGGGTGG+TGG 0.319787 3.1:+76721361 None:intergenic
GTCCGTAGCATTCGTGTAGA+TGG 0.320083 3.1:-76719343 MS.gene054963:CDS
AGCTTGAACAGCACTATAAA+TGG 0.323421 3.1:+76719306 None:intergenic
TTTCAAATAAGTTTGATAAT+GGG 0.330368 3.1:-76720311 MS.gene054963:CDS
TTTCTCCTGTTCATGGAGAT+TGG 0.340115 3.1:+76718550 None:intergenic
TGTGCTTGTTGGACCCATAA+TGG 0.349351 3.1:+76720268 None:intergenic
AACTATATGGAAATATTTGT+TGG 0.359142 3.1:+76718488 None:intergenic
TACCGTGTTCTTGATGATAA+TGG 0.369195 3.1:-76721222 MS.gene054963:CDS
CATGGTTGCACTTCAAACTA+TGG 0.372541 3.1:-76721054 MS.gene054963:CDS
GCATGTGCCGTAACATATTT+CGG 0.385578 3.1:-76720003 MS.gene054963:CDS
CTCGTTGGCGGGACGATACT+TGG 0.386748 3.1:+76719059 None:intergenic
TTATAGCCCATCCATTATTC+CGG 0.395618 3.1:+76719537 None:intergenic
GGCAGATGCCAGCCCATTAT+GGG 0.420042 3.1:-76720281 MS.gene054963:CDS
ATTCATGTAATTGTGCTTGT+TGG 0.423872 3.1:+76720257 None:intergenic
TCCTGTTCATGGAGATTGGA+TGG 0.425924 3.1:+76718554 None:intergenic
TCCATCCAATCTCCATGAAC+AGG 0.427742 3.1:-76718555 MS.gene054963:CDS
GTGCTTGTTGGACCCATAAT+GGG 0.428032 3.1:+76720269 None:intergenic
ATCTCCATGAACAGGAGAAA+TGG 0.428351 3.1:-76718547 MS.gene054963:CDS
ATCAATGGCCTGATCGTGAA+TGG 0.437790 3.1:+76721320 None:intergenic
ACTATATGGAAATATTTGTT+GGG 0.442669 3.1:+76718489 None:intergenic
TAGGAACAGTTTGAGACAAC+AGG 0.446713 3.1:-76718941 MS.gene054963:intron
AGCTGCATATTCCTTAAAGA+TGG 0.452958 3.1:-76720037 MS.gene054963:CDS
GTTGTGAAAGGACAGGCTTA+TGG 0.453904 3.1:-76719367 MS.gene054963:CDS
GTTAAAGCGGCGTGGGTGGT+GGG 0.454281 3.1:+76721362 None:intergenic
TACACTCTCAGCAACTTGAA+TGG 0.463732 3.1:+76718625 None:intergenic
TACCGCTGCAAAATTTAATC+CGG 0.464324 3.1:+76719586 None:intergenic
TCAATGGCCTGATCGTGAAT+GGG 0.464464 3.1:+76721321 None:intergenic
CTTCGAAACTGATCTGATGT+AGG 0.468212 3.1:+76719509 None:intergenic
TGTTCAAGCTGCTCGTCAAA+TGG 0.472797 3.1:-76719293 MS.gene054963:CDS
GGGAACAAGGAGTCTTGTTA+TGG 0.477452 3.1:-76720371 MS.gene054963:CDS
TCATAACCCCATTCACGATC+AGG 0.480021 3.1:-76721328 MS.gene054963:CDS
GATTTAGAAAGTGGATAGAA+AGG 0.484669 3.1:-76718999 MS.gene054963:CDS
TTCGAAACTGATCTGATGTA+GGG 0.489681 3.1:+76719510 None:intergenic
CTGTAGTGAGATTTAGAAAG+TGG 0.501288 3.1:-76719008 MS.gene054963:CDS
ATCAGCTGCAGCTCTTTCCA+TGG 0.514662 3.1:-76720949 MS.gene054963:CDS
ACGCAAATTCCCCATGCTGT+TGG 0.515599 3.1:-76720060 MS.gene054963:CDS
AATAAGTTTGATAATGGGAA+AGG 0.516825 3.1:-76720306 MS.gene054963:CDS
TGGAGTTAAAGCGGCGTGGG+TGG 0.516948 3.1:+76721358 None:intergenic
CCACCATTCTATCTCGTTGG+CGG 0.520404 3.1:+76719047 None:intergenic
GGATTTGAAGCAAGTGAGAA+TGG 0.520580 3.1:+76721437 None:intergenic
CACCATTCTATCTCGTTGGC+GGG 0.527457 3.1:+76719048 None:intergenic
CGGGAAAATAACATCGTCCA+TGG 0.528957 3.1:+76720932 None:intergenic
ATTTCCACCGGGGAAATCAA+TGG 0.533647 3.1:+76721305 None:intergenic
TATGAATTTGACATTTCCAC+CGG 0.533970 3.1:+76721293 None:intergenic
TTATATGCCGGAATAATGGA+TGG 0.534376 3.1:-76719544 MS.gene054963:CDS
CACTTTCTAAATCTCACTAC+AGG 0.536576 3.1:+76719009 None:intergenic
ACCATCTCCGAAATATGTTA+CGG 0.538718 3.1:+76719996 None:intergenic
TGGTGGAGTTAAAGCGGCGT+GGG 0.539258 3.1:+76721355 None:intergenic
TGTAGATGGGAATGATGCTC+TGG 0.540418 3.1:-76719329 MS.gene054963:CDS
ATATGCAGCTCCAACAGCAT+GGG 0.542436 3.1:+76720050 None:intergenic
AAAGCGGCGTGGGTGGTGGG+TGG 0.543898 3.1:+76721365 None:intergenic
GTCCCGCCAACGAGATAGAA+TGG 0.546054 3.1:-76719050 MS.gene054963:CDS
CGGTATTGTTGTGAAAGGAC+AGG 0.548213 3.1:-76719374 MS.gene054963:CDS
AATATGCAGCTCCAACAGCA+TGG 0.552307 3.1:+76720049 None:intergenic
TCCGTAGCATTCGTGTAGAT+GGG 0.552757 3.1:-76719342 MS.gene054963:CDS
GAAGCAAGTGAGAATGGTGG+TGG 0.557155 3.1:+76721443 None:intergenic
ACATGGCTGAGTCTGAGCTT+AGG 0.558677 3.1:-76718960 MS.gene054963:CDS
GGATAGAAAGGAATGGTTGG+TGG 0.559328 3.1:-76718987 MS.gene054963:CDS
TGACAGGGAGATTTCCATGC+CGG 0.562203 3.1:-76719605 MS.gene054963:intron
TTGTTGGACCCATAATGGGC+TGG 0.564271 3.1:+76720273 None:intergenic
CAGGCTCTTACATATAGAGT+AGG 0.566525 3.1:-76719108 MS.gene054963:CDS
AGTTTGATAATGGGAAAGGA+AGG 0.568039 3.1:-76720302 MS.gene054963:CDS
TATATGCCGGAATAATGGAT+GGG 0.568225 3.1:-76719543 MS.gene054963:CDS
GAAATTAGGTTTCCGACGAG+TGG 0.569374 3.1:+76721389 None:intergenic
CTGCAAAATTTAATCCGGCA+TGG 0.571659 3.1:+76719591 None:intergenic
TCTTCTTATCTTCCACTCGT+CGG 0.577089 3.1:-76721401 MS.gene054963:CDS
GCCGTAACATATTTCGGAGA+TGG 0.577923 3.1:-76719997 MS.gene054963:CDS
GATCAGGCCATTGATTTCCC+CGG 0.583473 3.1:-76721312 MS.gene054963:CDS
CAAGGAGTCTTGTTATGGCG+TGG 0.584066 3.1:-76720366 MS.gene054963:CDS
ATATTTGTTGGGTAAACATG+TGG 0.592694 3.1:+76718500 None:intergenic
CTTGGTAGAGTCATCTGATG+TGG 0.593776 3.1:+76719077 None:intergenic
AGTGGATAGAAAGGAATGGT+TGG 0.596393 3.1:-76718990 MS.gene054963:CDS
CGGAGATGGTGGTTCAAGTG+AGG 0.598055 3.1:-76719983 MS.gene054963:intron
TGATGCTGTTTAGGTTAGCG+AGG 0.600776 3.1:-76721102 MS.gene054963:intron
TTCTATGAAGCACAAAGACA+AGG 0.602730 3.1:-76721023 MS.gene054963:CDS
AGAAAGTGGATAGAAAGGAA+TGG 0.604364 3.1:-76718994 MS.gene054963:CDS
TCTCCACCATTCTATCTCGT+TGG 0.604472 3.1:+76719044 None:intergenic
GTAACATATTTCGGAGATGG+TGG 0.604520 3.1:-76719994 MS.gene054963:CDS
TTGTTGGGTAAACATGTGGA+TGG 0.606418 3.1:+76718504 None:intergenic
TCACTAAACATGTCTGCAAG+TGG 0.606720 3.1:+76718593 None:intergenic
TCATCAAGAACACGGTAACA+AGG 0.609922 3.1:+76721228 None:intergenic
TCCCATCTACACGAATGCTA+CGG 0.620589 3.1:+76719341 None:intergenic
CACCATTATCATCAAGAACA+CGG 0.621664 3.1:+76721220 None:intergenic
TGAACAGGAGAAATGGCTGA+AGG 0.622098 3.1:-76718540 MS.gene054963:CDS
CAATGGCCTGATCGTGAATG+GGG 0.622105 3.1:+76721322 None:intergenic
GGTGACGGTATTGTTGTGAA+AGG 0.624075 3.1:-76719379 MS.gene054963:CDS
GAGCAGTGGTGGAGTTAAAG+CGG 0.626711 3.1:+76721349 None:intergenic
GTGGTGGAGTTAAAGCGGCG+TGG 0.638211 3.1:+76721354 None:intergenic
CAGGCCATTGATTTCCCCGG+TGG 0.638723 3.1:-76721309 MS.gene054963:CDS
ATGAATTTGACATTTCCACC+GGG 0.645088 3.1:+76721294 None:intergenic
CTAAACATGTCTGCAAGTGG+AGG 0.645266 3.1:+76718596 None:intergenic
GTGAATGGGGTTATGAGCAG+TGG 0.646216 3.1:+76721335 None:intergenic
TATGCAGCTCCAACAGCATG+GGG 0.649008 3.1:+76720051 None:intergenic
AATGGGGTTATGAGCAGTGG+TGG 0.649419 3.1:+76721338 None:intergenic
TGTGTGCAGTATAGGGAACA+AGG 0.650480 3.1:-76720384 MS.gene054963:intron
TGTTAAAATGTACAATGACA+TGG 0.664765 3.1:-76721072 MS.gene054963:CDS
TAGAGTCATCTGATGTGGAG+TGG 0.674103 3.1:+76719082 None:intergenic
GAATGGTTGGTGGAATGACA+TGG 0.675261 3.1:-76718977 MS.gene054963:CDS
TCGAAACTGATCTGATGTAG+GGG 0.680340 3.1:+76719511 None:intergenic
TGTTCATGGAGATTGGATGG+AGG 0.693865 3.1:+76718557 None:intergenic
CCGCCAACGAGATAGAATGG+TGG 0.712027 3.1:-76719047 MS.gene054963:CDS
TTTGAAGCAAGTGAGAATGG+TGG 0.730604 3.1:+76721440 None:intergenic
TGAATTTGACATTTCCACCG+GGG 0.758614 3.1:+76721295 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATTCATACTTTCAT+TGG - chr3.1:76719459-76719478 MS.gene054963:intron 15.0%
!! AAAAAATTCATACTTTCATT+GGG - chr3.1:76719460-76719479 MS.gene054963:intron 15.0%
!! AAGAAAATAATTGAAATAGA+AGG + chr3.1:76720476-76720495 None:intergenic 15.0%
!!! AATATTTAACAATGCTTTTA+TGG + chr3.1:76721264-76721283 None:intergenic 15.0%
!!! AATTTTCTTGAATTTGATTT+AGG - chr3.1:76721233-76721252 MS.gene054963:CDS 15.0%
!!! ATTACTACTATTATTTTTGT+TGG - chr3.1:76719788-76719807 MS.gene054963:intron 15.0%
!!! TAAACTTTAATATCGTTTTT+TGG - chr3.1:76720137-76720156 MS.gene054963:intron 15.0%
!!! TTTCAAATAAGTTTGATAAT+GGG - chr3.1:76719635-76719654 MS.gene054963:intron 15.0%
!!! TTTTCAAATAAGTTTGATAA+TGG - chr3.1:76719634-76719653 MS.gene054963:intron 15.0%
!!! TTTTGCTACAAAATATTTTA+AGG + chr3.1:76721192-76721211 None:intergenic 15.0%
!! AAAAAAATCTTAACATATCG+AGG + chr3.1:76720280-76720299 None:intergenic 20.0%
!! ACTTTCAATTTCAAAATTGT+TGG + chr3.1:76719834-76719853 None:intergenic 20.0%
!! CTTTCAATTTCAAAATTGTT+GGG + chr3.1:76719833-76719852 None:intergenic 20.0%
!! TCAGATAAAAAATTCATTTG+AGG + chr3.1:76718679-76718698 None:intergenic 20.0%
!!! AATATATTTGAAACAGAACT+AGG + chr3.1:76721079-76721098 None:intergenic 20.0%
!!! ATATATTTGAAACAGAACTA+GGG + chr3.1:76721078-76721097 None:intergenic 20.0%
!!! ATTTTGTAGCAAAAAATTTG+CGG - chr3.1:76721198-76721217 MS.gene054963:CDS 20.0%
!!! CATTTTACTTCTATTAGAAT+TGG + chr3.1:76720696-76720715 None:intergenic 20.0%
!!! TCATTTTATGTAACTACAAA+TGG - chr3.1:76718953-76718972 MS.gene054963:CDS 20.0%
!!! TTAAAATTTTGAAGGAGTTT+AGG - chr3.1:76720084-76720103 MS.gene054963:intron 20.0%
!!! TTAATATCGTTTTTTGGTTT+AGG - chr3.1:76720143-76720162 MS.gene054963:intron 20.0%
!!! TTTTGCTCTTAAAATTTTGA+AGG - chr3.1:76720076-76720095 MS.gene054963:intron 20.0%
! ACAGAAATTTCCATTCAATA+AGG + chr3.1:76720028-76720047 None:intergenic 25.0%
! AGAAATTTCCATTCAATAAG+GGG + chr3.1:76720026-76720045 None:intergenic 25.0%
! ATTTCTCATATTGTAATGCA+AGG + chr3.1:76719423-76719442 None:intergenic 25.0%
! CAGAAATTTCCATTCAATAA+GGG + chr3.1:76720027-76720046 None:intergenic 25.0%
! CTATCACACACTTATTTAAT+GGG + chr3.1:76720219-76720238 None:intergenic 25.0%
! TAAGAAGAAGTTGTTAAAGT+TGG + chr3.1:76718533-76718552 None:intergenic 25.0%
! TCAACAGCAAATTATTATCA+AGG - chr3.1:76720252-76720271 MS.gene054963:CDS 25.0%
! TCAGTTTCGAAGTAATTTAT+CGG - chr3.1:76720448-76720467 MS.gene054963:intron 25.0%
! TCTATCACACACTTATTTAA+TGG + chr3.1:76720220-76720239 None:intergenic 25.0%
! TGTTAAAATGTACAATGACA+TGG - chr3.1:76718874-76718893 MS.gene054963:intron 25.0%
! TGTTAAATTTCACTACATTG+AGG + chr3.1:76719372-76719391 None:intergenic 25.0%
!! AGTTGCATAGAATTTTTGTT+AGG - chr3.1:76720168-76720187 MS.gene054963:intron 25.0%
!! ATCAACCAAATGATTTTTCA+GGG + chr3.1:76721047-76721066 None:intergenic 25.0%
!! ATTTTTATATGCCGGAATAA+TGG - chr3.1:76720398-76720417 MS.gene054963:intron 25.0%
!! GGACATGTTTAAAACAAAAA+TGG - chr3.1:76720739-76720758 MS.gene054963:intron 25.0%
!! TATCAACCAAATGATTTTTC+AGG + chr3.1:76721048-76721067 None:intergenic 25.0%
!! TTACTTACATAAATTTTGCG+AGG + chr3.1:76719216-76719235 None:intergenic 25.0%
!!! AATAAGTTTGATAATGGGAA+AGG - chr3.1:76719640-76719659 MS.gene054963:intron 25.0%
!!! ATATAATTTTGATCAACCTG+CGG + chr3.1:76719037-76719056 None:intergenic 25.0%
ACACACTTATTTAATGGGAT+GGG + chr3.1:76720214-76720233 None:intergenic 30.0%
AGAAGAAACAGATACAACAT+TGG + chr3.1:76720811-76720830 None:intergenic 30.0%
ATATAGTGTTGTCAAATAGC+AGG - chr3.1:76719339-76719358 MS.gene054963:CDS 30.0%
ATCTTCTGTAAGATCATTTC+TGG + chr3.1:76719533-76719552 None:intergenic 30.0%
ATTCATGTAATTGTGCTTGT+TGG + chr3.1:76719692-76719711 None:intergenic 30.0%
CGATAGCAAAAGATAAAACA+AGG - chr3.1:76719073-76719092 MS.gene054963:CDS 30.0%
CTCATATTGAAGCATGTTAA+CGG - chr3.1:76720781-76720800 MS.gene054963:intron 30.0%
GATGAATGAAATGAAAGTGA+AGG + chr3.1:76718800-76718819 None:intergenic 30.0%
GATTTAGAAAGTGGATAGAA+AGG - chr3.1:76720947-76720966 MS.gene054963:CDS 30.0%
TATACTAATGCAATTGACAC+AGG - chr3.1:76721135-76721154 MS.gene054963:intron 30.0%
TATCTAACGATATATTGTGC+TGG - chr3.1:76720526-76720545 MS.gene054963:intron 30.0%
TATGAATTTGACATTTCCAC+CGG + chr3.1:76718656-76718675 None:intergenic 30.0%
TCAAACAAGTCAATACAAAC+AGG - chr3.1:76719242-76719261 MS.gene054963:intron 30.0%
TCCGGCATATAAAAATAACT+GGG + chr3.1:76720394-76720413 None:intergenic 30.0%
TGTACAATGTTGTCAAATAG+TGG - chr3.1:76719269-76719288 MS.gene054963:CDS 30.0%
TGTGTCAATTGCATTAGTAT+AGG + chr3.1:76721136-76721155 None:intergenic 30.0%
TTCCGGCATATAAAAATAAC+TGG + chr3.1:76720395-76720414 None:intergenic 30.0%
TTCCTTAAAGATGGACAAAA+AGG - chr3.1:76719918-76719937 MS.gene054963:intron 30.0%
! ATAATGGTGAACCAATTTTC+GGG - chr3.1:76718740-76718759 MS.gene054963:intron 30.0%
! ATATTTGTTGGGTAAACATG+TGG + chr3.1:76721449-76721468 None:intergenic 30.0%
! ATCCTTTTTGTCCATCTTTA+AGG + chr3.1:76719923-76719942 None:intergenic 30.0%
! ATTAAATTTTGCAGCGGTAA+TGG - chr3.1:76720364-76720383 MS.gene054963:CDS 30.0%
! CTTAGAAATTGATGCTGTTT+AGG - chr3.1:76718835-76718854 MS.gene054963:intron 30.0%
! CTTTTCCCTGAAAAATCATT+TGG - chr3.1:76721039-76721058 MS.gene054963:CDS 30.0%
! TATTGATTGTGTGCAGTATA+GGG - chr3.1:76719555-76719574 MS.gene054963:CDS 30.0%
! TTATTGATTGTGTGCAGTAT+AGG - chr3.1:76719554-76719573 MS.gene054963:CDS 30.0%
!! AACCTTTGAAGTCAAATCTT+TGG - chr3.1:76720718-76720737 MS.gene054963:intron 30.0%
!! GATAATGGTGAACCAATTTT+CGG - chr3.1:76718739-76718758 MS.gene054963:intron 30.0%
!! TATAATTTTGATCAACCTGC+GGG + chr3.1:76719036-76719055 None:intergenic 30.0%
!! TGTGCTATTTAAACATGTCA+TGG - chr3.1:76720045-76720064 MS.gene054963:CDS 30.0%
AAACAAAAATGGCAGTATGC+TGG - chr3.1:76720750-76720769 MS.gene054963:intron 35.0%
AATGCAATTGACACAGGTAT+GGG - chr3.1:76721141-76721160 MS.gene054963:intron 35.0%
ACAAAATCAGTCCCGAAAAT+TGG + chr3.1:76718754-76718773 None:intergenic 35.0%
ACCATCTCCGAAATATGTTA+CGG + chr3.1:76719953-76719972 None:intergenic 35.0%
AGAAAGTGGATAGAAAGGAA+TGG - chr3.1:76720952-76720971 MS.gene054963:CDS 35.0%
AGCTGCATATTCCTTAAAGA+TGG - chr3.1:76719909-76719928 MS.gene054963:intron 35.0%
AGCTTGAACAGCACTATAAA+TGG + chr3.1:76720643-76720662 None:intergenic 35.0%
AGGTTATACTGTATCACTCT+CGG - chr3.1:76720104-76720123 MS.gene054963:intron 35.0%
ATGAATTTGACATTTCCACC+GGG + chr3.1:76718655-76718674 None:intergenic 35.0%
ATTGAGTTATGAGCTATGAC+AGG - chr3.1:76720325-76720344 MS.gene054963:CDS 35.0%
CACACACTTATTTAATGGGA+TGG + chr3.1:76720215-76720234 None:intergenic 35.0%
CACCATTATCATCAAGAACA+CGG + chr3.1:76718729-76718748 None:intergenic 35.0%
CACTTTCTAAATCTCACTAC+AGG + chr3.1:76720940-76720959 None:intergenic 35.0%
CCGGCATATAAAAATAACTG+GGG + chr3.1:76720393-76720412 None:intergenic 35.0%
CTGTAGTGAGATTTAGAAAG+TGG - chr3.1:76720938-76720957 MS.gene054963:CDS 35.0%
GAATGAAATGAAAGTGAAGG+TGG + chr3.1:76718797-76718816 None:intergenic 35.0%
TAATGCAAGGTTGTCAATTG+TGG + chr3.1:76719410-76719429 None:intergenic 35.0%
TAATGCAATTGACACAGGTA+TGG - chr3.1:76721140-76721159 MS.gene054963:intron 35.0%
TACCGCTGCAAAATTTAATC+CGG + chr3.1:76720363-76720382 None:intergenic 35.0%
TCCTGTTTATACATAGGTGA+CGG - chr3.1:76720552-76720571 MS.gene054963:intron 35.0%
TGGTGTTCCTGTTTATACAT+AGG - chr3.1:76720546-76720565 MS.gene054963:intron 35.0%
TTATAGCCCATCCATTATTC+CGG + chr3.1:76720412-76720431 None:intergenic 35.0%
TTCGAAACTGATCTGATGTA+GGG + chr3.1:76720439-76720458 None:intergenic 35.0%
TTCTATGAAGCACAAAGACA+AGG - chr3.1:76718923-76718942 MS.gene054963:intron 35.0%
TTGAGTTATGAGCTATGACA+GGG - chr3.1:76720326-76720345 MS.gene054963:CDS 35.0%
! GTCCAAAGATTTGACTTCAA+AGG + chr3.1:76720723-76720742 None:intergenic 35.0%
! TAAATTTTGCGAGGCTGTTT+AGG + chr3.1:76719207-76719226 None:intergenic 35.0%
! TACCGTGTTCTTGATGATAA+TGG - chr3.1:76718724-76718743 MS.gene054963:intron 35.0%
! TTATATGCCGGAATAATGGA+TGG - chr3.1:76720402-76720421 MS.gene054963:intron 35.0%
!! AGTTTGATAATGGGAAAGGA+AGG - chr3.1:76719644-76719663 MS.gene054963:intron 35.0%
!! TATATGCCGGAATAATGGAT+GGG - chr3.1:76720403-76720422 MS.gene054963:intron 35.0%
!!! CCCCAGTTATTTTTATATGC+CGG - chr3.1:76720390-76720409 MS.gene054963:intron 35.0%
!!! TCTGTTTCTTCTGTTTTTGC+AGG - chr3.1:76720819-76720838 MS.gene054963:intron 35.0%
ACCGTCACCTATGTATAAAC+AGG + chr3.1:76720556-76720575 None:intergenic 40.0%
AGTGGATAGAAAGGAATGGT+TGG - chr3.1:76720956-76720975 MS.gene054963:CDS 40.0%
ATCTCCATGAACAGGAGAAA+TGG - chr3.1:76721399-76721418 MS.gene054963:CDS 40.0%
ATGCAATTGACACAGGTATG+GGG - chr3.1:76721142-76721161 MS.gene054963:intron 40.0%
CAGCGACGATTACAAATTCA+TGG + chr3.1:76721102-76721121 None:intergenic 40.0%
CAGGCTCTTACATATAGAGT+AGG - chr3.1:76720838-76720857 MS.gene054963:intron 40.0%
CATGGTTGCACTTCAAACTA+TGG - chr3.1:76718892-76718911 MS.gene054963:intron 40.0%
CTGCAAAATTTAATCCGGCA+TGG + chr3.1:76720358-76720377 None:intergenic 40.0%
CTTCGAAACTGATCTGATGT+AGG + chr3.1:76720440-76720459 None:intergenic 40.0%
GCATGTGCCGTAACATATTT+CGG - chr3.1:76719943-76719962 MS.gene054963:intron 40.0%
GTAACATATTTCGGAGATGG+TGG - chr3.1:76719952-76719971 MS.gene054963:intron 40.0%
TACACTCTCAGCAACTTGAA+TGG + chr3.1:76721324-76721343 None:intergenic 40.0%
TCACTAAACATGTCTGCAAG+TGG + chr3.1:76721356-76721375 None:intergenic 40.0%
TCATCAAGAACACGGTAACA+AGG + chr3.1:76718721-76718740 None:intergenic 40.0%
TCGAAACTGATCTGATGTAG+GGG + chr3.1:76720438-76720457 None:intergenic 40.0%
TCTTCTTATCTTCCACTCGT+CGG - chr3.1:76718545-76718564 MS.gene054963:CDS 40.0%
TGAATTTGACATTTCCACCG+GGG + chr3.1:76718654-76718673 None:intergenic 40.0%
TTGTTGGGTAAACATGTGGA+TGG + chr3.1:76721445-76721464 None:intergenic 40.0%
TTTCTCCTGTTCATGGAGAT+TGG + chr3.1:76721399-76721418 None:intergenic 40.0%
! GGATTTGAAGCAAGTGAGAA+TGG + chr3.1:76718512-76718531 None:intergenic 40.0%
! GTATGGGGTATCTGATTACT+TGG - chr3.1:76721157-76721176 MS.gene054963:intron 40.0%
! TAGGAACAGTTTGAGACAAC+AGG - chr3.1:76721005-76721024 MS.gene054963:CDS 40.0%
! TGCCGGATTAAATTTTGCAG+CGG - chr3.1:76720358-76720377 MS.gene054963:CDS 40.0%
! TTTGAAGCAAGTGAGAATGG+TGG + chr3.1:76718509-76718528 None:intergenic 40.0%
!! AAATTTTGCAGCGGTAATGG+AGG - chr3.1:76720367-76720386 MS.gene054963:CDS 40.0%
!! TTTCGGGACTGATTTTGTTC+AGG - chr3.1:76718756-76718775 MS.gene054963:intron 40.0%
AATATGCAGCTCCAACAGCA+TGG + chr3.1:76719900-76719919 None:intergenic 45.0%
ATATGCAGCTCCAACAGCAT+GGG + chr3.1:76719899-76719918 None:intergenic 45.0%
ATCAATGGCCTGATCGTGAA+TGG + chr3.1:76718629-76718648 None:intergenic 45.0%
ATTTCCACCGGGGAAATCAA+TGG + chr3.1:76718644-76718663 None:intergenic 45.0%
CGGGAAAATAACATCGTCCA+TGG + chr3.1:76719017-76719036 None:intergenic 45.0%
CGGTATTGTTGTGAAAGGAC+AGG - chr3.1:76720572-76720591 MS.gene054963:intron 45.0%
CTAAACATGTCTGCAAGTGG+AGG + chr3.1:76721353-76721372 None:intergenic 45.0%
CTTGGTAGAGTCATCTGATG+TGG + chr3.1:76720872-76720891 None:intergenic 45.0%
GAAATTAGGTTTCCGACGAG+TGG + chr3.1:76718560-76718579 None:intergenic 45.0%
GCCGTAACATATTTCGGAGA+TGG - chr3.1:76719949-76719968 MS.gene054963:intron 45.0%
GGATAGAAAGGAATGGTTGG+TGG - chr3.1:76720959-76720978 MS.gene054963:CDS 45.0%
GTTGTGAAAGGACAGGCTTA+TGG - chr3.1:76720579-76720598 MS.gene054963:intron 45.0%
TAGAGTCATCTGATGTGGAG+TGG + chr3.1:76720867-76720886 None:intergenic 45.0%
TCAATGGCCTGATCGTGAAT+GGG + chr3.1:76718628-76718647 None:intergenic 45.0%
TCAGCCATTTCTCCTGTTCA+TGG + chr3.1:76721406-76721425 None:intergenic 45.0%
TCATAACCCCATTCACGATC+AGG - chr3.1:76718618-76718637 MS.gene054963:CDS 45.0%
TCCATCCAATCTCCATGAAC+AGG - chr3.1:76721391-76721410 MS.gene054963:CDS 45.0%
TCCCATCTACACGAATGCTA+CGG + chr3.1:76720608-76720627 None:intergenic 45.0%
TCCGTAGCATTCGTGTAGAT+GGG - chr3.1:76720604-76720623 MS.gene054963:intron 45.0%
TCCTGTTCATGGAGATTGGA+TGG + chr3.1:76721395-76721414 None:intergenic 45.0%
TCGCTTCTCCCCTTATTGAA+TGG - chr3.1:76720015-76720034 MS.gene054963:CDS 45.0%
TCTCCACCATTCTATCTCGT+TGG + chr3.1:76720905-76720924 None:intergenic 45.0%
TGAACAGGAGAAATGGCTGA+AGG - chr3.1:76721406-76721425 MS.gene054963:CDS 45.0%
TGGTCTGTAGAAGCTGTAAC+AGG + chr3.1:76721304-76721323 None:intergenic 45.0%
TGTAGATGGGAATGATGCTC+TGG - chr3.1:76720617-76720636 MS.gene054963:intron 45.0%
TGTGTGCAGTATAGGGAACA+AGG - chr3.1:76719562-76719581 MS.gene054963:CDS 45.0%
TGTTCAAGCTGCTCGTCAAA+TGG - chr3.1:76720653-76720672 MS.gene054963:intron 45.0%
TGTTCATGGAGATTGGATGG+AGG + chr3.1:76721392-76721411 None:intergenic 45.0%
! GGTGACGGTATTGTTGTGAA+AGG - chr3.1:76720567-76720586 MS.gene054963:intron 45.0%
! GTGCTTGTTGGACCCATAAT+GGG + chr3.1:76719680-76719699 None:intergenic 45.0%
! TGATGCTGTTTAGGTTAGCG+AGG - chr3.1:76718844-76718863 MS.gene054963:intron 45.0%
! TGTGCTTGTTGGACCCATAA+TGG + chr3.1:76719681-76719700 None:intergenic 45.0%
!! GAATGGTTGGTGGAATGACA+TGG - chr3.1:76720969-76720988 MS.gene054963:CDS 45.0%
!! GAGAAGCGAGTCTGCTTTTA+TGG + chr3.1:76720004-76720023 None:intergenic 45.0%
!! GGGAACAAGGAGTCTTGTTA+TGG - chr3.1:76719575-76719594 MS.gene054963:CDS 45.0%
AATGGGGTTATGAGCAGTGG+TGG + chr3.1:76718611-76718630 None:intergenic 50.0%
ACATGGCTGAGTCTGAGCTT+AGG - chr3.1:76720986-76721005 MS.gene054963:CDS 50.0%
ACGCAAATTCCCCATGCTGT+TGG - chr3.1:76719886-76719905 MS.gene054963:intron 50.0%
ATCAGCTGCAGCTCTTTCCA+TGG - chr3.1:76718997-76719016 MS.gene054963:CDS 50.0%
CAATGGCCTGATCGTGAATG+GGG + chr3.1:76718627-76718646 None:intergenic 50.0%
CACCATTCTATCTCGTTGGC+GGG + chr3.1:76720901-76720920 None:intergenic 50.0%
CCACCATTCTATCTCGTTGG+CGG + chr3.1:76720902-76720921 None:intergenic 50.0%
GAAGCAAGTGAGAATGGTGG+TGG + chr3.1:76718506-76718525 None:intergenic 50.0%
GTCCGTAGCATTCGTGTAGA+TGG - chr3.1:76720603-76720622 MS.gene054963:intron 50.0%
GTGAATGGGGTTATGAGCAG+TGG + chr3.1:76718614-76718633 None:intergenic 50.0%
TATGCAGCTCCAACAGCATG+GGG + chr3.1:76719898-76719917 None:intergenic 50.0%
TGACAGGGAGATTTCCATGC+CGG - chr3.1:76720341-76720360 MS.gene054963:CDS 50.0%
! GAGCAGTGGTGGAGTTAAAG+CGG + chr3.1:76718600-76718619 None:intergenic 50.0%
!! CAAGGAGTCTTGTTATGGCG+TGG - chr3.1:76719580-76719599 MS.gene054963:CDS 50.0%
!! GATCAGGCCATTGATTTCCC+CGG - chr3.1:76718634-76718653 MS.gene054963:CDS 50.0%
!! TTGTTGGACCCATAATGGGC+TGG + chr3.1:76719676-76719695 None:intergenic 50.0%
!!! GGACGATGTTATTTTCCCGC+AGG - chr3.1:76719018-76719037 MS.gene054963:CDS 50.0%
AGGCAGATGCCAGCCCATTA+TGG - chr3.1:76719664-76719683 MS.gene054963:intron 55.0%
CCGCCAACGAGATAGAATGG+TGG - chr3.1:76720899-76720918 MS.gene054963:intron 55.0%
GGCAGATGCCAGCCCATTAT+GGG - chr3.1:76719665-76719684 MS.gene054963:intron 55.0%
GTCCCGCCAACGAGATAGAA+TGG - chr3.1:76720896-76720915 MS.gene054963:intron 55.0%
TGGTGGAGTTAAAGCGGCGT+GGG + chr3.1:76718594-76718613 None:intergenic 55.0%
! CGGAGATGGTGGTTCAAGTG+AGG - chr3.1:76719963-76719982 MS.gene054963:intron 55.0%
!! GGGTGGTGGGTGGTGAAATT+AGG + chr3.1:76718574-76718593 None:intergenic 55.0%
AGTTAAAGCGGCGTGGGTGG+TGG + chr3.1:76718588-76718607 None:intergenic 60.0%
CTCGTTGGCGGGACGATACT+TGG + chr3.1:76720890-76720909 None:intergenic 60.0%
GTTAAAGCGGCGTGGGTGGT+GGG + chr3.1:76718587-76718606 None:intergenic 60.0%
TGGAGTTAAAGCGGCGTGGG+TGG + chr3.1:76718591-76718610 None:intergenic 60.0%
! GTGGTGGAGTTAAAGCGGCG+TGG + chr3.1:76718595-76718614 None:intergenic 60.0%
!! CAGGCCATTGATTTCCCCGG+TGG - chr3.1:76718637-76718656 MS.gene054963:CDS 60.0%
!! AAAGCGGCGTGGGTGGTGGG+TGG + chr3.1:76718584-76718603 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 76718490 76721478 76718490 ID=MS.gene054963
chr3.1 mRNA 76718490 76721478 76718490 ID=MS.gene054963.t1;Parent=MS.gene054963
chr3.1 exon 76721197 76721478 76721197 ID=MS.gene054963.t1.exon1;Parent=MS.gene054963.t1
chr3.1 CDS 76721197 76721478 76721197 ID=cds.MS.gene054963.t1;Parent=MS.gene054963.t1
chr3.1 exon 76720929 76721111 76720929 ID=MS.gene054963.t1.exon2;Parent=MS.gene054963.t1
chr3.1 CDS 76720929 76721111 76720929 ID=cds.MS.gene054963.t1;Parent=MS.gene054963.t1
chr3.1 exon 76720240 76720397 76720240 ID=MS.gene054963.t1.exon3;Parent=MS.gene054963.t1
chr3.1 CDS 76720240 76720397 76720240 ID=cds.MS.gene054963.t1;Parent=MS.gene054963.t1
chr3.1 exon 76719984 76720083 76719984 ID=MS.gene054963.t1.exon4;Parent=MS.gene054963.t1
chr3.1 CDS 76719984 76720083 76719984 ID=cds.MS.gene054963.t1;Parent=MS.gene054963.t1
chr3.1 exon 76719510 76719621 76719510 ID=MS.gene054963.t1.exon5;Parent=MS.gene054963.t1
chr3.1 CDS 76719510 76719621 76719510 ID=cds.MS.gene054963.t1;Parent=MS.gene054963.t1
chr3.1 exon 76719261 76719400 76719261 ID=MS.gene054963.t1.exon6;Parent=MS.gene054963.t1
chr3.1 CDS 76719261 76719400 76719261 ID=cds.MS.gene054963.t1;Parent=MS.gene054963.t1
chr3.1 exon 76718942 76719127 76718942 ID=MS.gene054963.t1.exon7;Parent=MS.gene054963.t1
chr3.1 CDS 76718942 76719127 76718942 ID=cds.MS.gene054963.t1;Parent=MS.gene054963.t1
chr3.1 exon 76718490 76718657 76718490 ID=MS.gene054963.t1.exon8;Parent=MS.gene054963.t1
chr3.1 CDS 76718490 76718657 76718490 ID=cds.MS.gene054963.t1;Parent=MS.gene054963.t1
Gene Sequence

>MS.gene054963

ATGATGAGAAAATCCACCACCATTCTCACTTGCTTCAAATCCAACTTTAACAACTTCTTCTTATCTTCCACTCGTCGGAAACCTAATTTCACCACCCACCACCCACGCCGCTTTAACTCCACCACTGCTCATAACCCCATTCACGATCAGGCCATTGATTTCCCCGGTGGAAATGTCAAATTCATACCTCAAATGAATTTTTTATCTGAATCACAACAACACAGAGTTCCTTGTTACCGTGTTCTTGATGATAATGGTGAACCAATTTTCGGGACTGATTTTGTTCAGGTTTGCACTTACTTCACCACCTTCACTTTCATTTCATTCATCTGTGAAAATTAGTATCTTAGAAATTGATGCTGTTTAGGTTAGCGAGGATGTTGCTGTTAAAATGTACAATGACATGGTTGCACTTCAAACTATGGACACTATCTTCTATGAAGCACAAAGACAAGGAAGAATCTCATTTTATGTAACTACAAATGGAGAAGAAGCTATCAACATTGCATCAGCTGCAGCTCTTTCCATGGACGATGTTATTTTCCCGCAGGTTGATCAAAATTATATTTTGTATAAGCTATTTCGATAGCAAAAGATAAAACAAGGTTAAATTGTTTTTGTATAAGCTATAAGTTGTTTTCATAAGATATCTTAGAGAATTTATGAAAATAAGCTAAAACAGTTTATGATTCATAAGTTGTTTTTATAAGTTCTCCTAAACAGCCTCGCAAAATTTATGTAAGTAAATAAGCTCAAACAAGTCAATACAAACAGGTGTATGTACAATGTTGTCAAATAGTGGCTATAACACTACAATGTAGCTGAATTTTAACAATATGCTTAGTATGTATATAGTGTTGTCAAATAGCAGGCATATCACCTCAATGTAGTGAAATTTAACAGTTATTTTCAGCAATCCACAATTGACAACCTTGCATTACAATATGAGAAATGCAACAGAAATCTATGAAAAAAATTCATACTTTCATTGGGATTTTTTTTTTTTTAATTTGTCTAAATTTTGCTAAAAAGTTAGCTAACCAGAAATGATCTTACAGAAGATATTATTGATTGTGTGCAGTATAGGGAACAAGGAGTCTTGTTATGGCGTGGCTTCACTCTGCAAGAATTCGCAAATCAGTGTTTTTCAAATAAGTTTGATAATGGGAAAGGAAGGCAGATGCCAGCCCATTATGGGTCCAACAAGCACAATTACATGAATGTAGCTTCAACTGTTGCGTAAGTATTGAAAAAGTTTGATGTACAAGACTTTGATGTATGATATTGATAATATTGTTATTACTACTATTATTTTTGTTGGTGTCGCTGCTGCTGTTTTTCCCAACAATTTTGAAATTGAAAGTTACAAAATGCAAAATCTACTTTGATCTGTAGTACGCAAATTCCCCATGCTGTTGGAGCTGCATATTCCTTAAAGATGGACAAAAAGGATGCATGTGCCGTAACATATTTCGGAGATGGTGGTTCAAGTGAGGTAAATTTTACAATTTCCATAAAAGCAGACTCGCTTCTCCCCTTATTGAATGGAAATTTCTGTGCTATTTAAACATGTCATGGATTGAGAGTTTTGCTCTTAAAATTTTGAAGGAGTTTAGGTTATACTGTATCACTCTCGGCTAAAACTTTTAAACTTTAATATCGTTTTTTGGTTTAGGAGAGTTGCATAGAATTTTTGTTAGGAAAAAAAAATATGCAGTTATCCCATCCCATTAAATAAGTGTGTGATAGAATGCTTTTGTTTTCAACAGCAAATTATTATCAAGGATCCTCGATATGTTAAGATTTTTTTTCTTTTGCTTTTTATATTGTAATAGATTGAGTTATGAGCTATGACAGGGAGATTTCCATGCCGGATTAAATTTTGCAGCGGTAATGGAGGCCCCAGTTATTTTTATATGCCGGAATAATGGATGGGCTATAAGTACCCCTACATCAGATCAGTTTCGAAGTAATTTATCGGTTCCTTCTATTTCAATTATTTTCTTACTGTCTACATCTTTAGCATTGTCTTGCAATATCTAACGATATATTGTGCTGGTGTTCCTGTTTATACATAGGTGACGGTATTGTTGTGAAAGGACAGGCTTATGGAGTCCGTAGCATTCGTGTAGATGGGAATGATGCTCTGGCCATTTATAGTGCTGTTCAAGCTGCTCGTCAAATGGCAGTTAGCGAAGAGAGACCAATTCTAATAGAAGTAAAATGATAACCTTTGAAGTCAAATCTTTGGACATGTTTAAAACAAAAATGGCAGTATGCTGGTATACAGTCTCATATTGAAGCATGTTAACGGCAGACCAATGTTGTATCTGTTTCTTCTGTTTTTGCAGGCTCTTACATATAGAGTAGGACACCACTCCACATCAGATGACTCTACCAAGTATCGTCCCGCCAACGAGATAGAATGGTGGAGATTGTCACGTGATCCTGTAGTGAGATTTAGAAAGTGGATAGAAAGGAATGGTTGGTGGAATGACATGGCTGAGTCTGAGCTTAGGAACAGTTTGAGACAACAGGTAACTAACTATCTTTTCCCTGAAAAATCATTTGGTTGATACTAGATACCCTAGTTCTGTTTCAAATATATTCCATGAATTTGTAATCGTCGCTGAAAGTGTTCTTCCTATACTAATGCAATTGACACAGGTATGGGGTATCTGATTACTTGGTATACTACACCTTAAAATATTTTGTAGCAAAAAATTTGCGGTTTTATAATCATAATTTTCTTGAATTTGATTTAGGATGATCCATAAAAGCATTGTTAAATATTTATTCTAACTCAAATTTCCTGTTACAGCTTCTACAGACCATTCAAGTTGCTGAGAGTGTAGAAAAACCTCCACTTGCAGACATGTTTAGTGATGTATATGATGTTCCTCCATCCAATCTCCATGAACAGGAGAAATGGCTGAAGGAGACAGTCAAAAACCATCCACATGTTTACCCAACAAATATTTCCATATAG

Protein sequence

>MS.gene054963.t1

MMRKSTTILTCFKSNFNNFFLSSTRRKPNFTTHHPRRFNSTTAHNPIHDQAIDFPGGNVKFIPQMNFLSESQQHRVPCYRVLDDNGEPIFGTDFVSEDVAVKMYNDMVALQTMDTIFYEAQRQGRISFYVTTNGEEAINIASAAALSMDDVIFPQYREQGVLLWRGFTLQEFANQCFSNKFDNGKGRQMPAHYGSNKHNYMNVASTVATQIPHAVGAAYSLKMDKKDACAVTYFGDGGSSEGDFHAGLNFAAVMEAPVIFICRNNGWAISTPTSDQFRSDGIVVKGQAYGVRSIRVDGNDALAIYSAVQAARQMAVSEERPILIEALTYRVGHHSTSDDSTKYRPANEIEWWRLSRDPVVRFRKWIERNGWWNDMAESELRNSLRQQLLQTIQVAESVEKPPLADMFSDVYDVPPSNLHEQEKWLKETVKNHPHVYPTNISI