Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049277.t1 | XP_003602628.1 | 96.8 | 444 | 14 | 0 | 1 | 444 | 6 | 449 | 9.10E-252 | 879 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049277.t1 | Q84JL2 | 70.8 | 415 | 120 | 1 | 31 | 444 | 58 | 472 | 6.3e-177 | 621.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049277.t1 | G7JBL9 | 96.8 | 444 | 14 | 0 | 1 | 444 | 6 | 449 | 6.6e-252 | 879.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene000331 | MS.gene049277 | PPI |
| MS.gene25271 | MS.gene049277 | PPI |
| MS.gene038691 | MS.gene049277 | PPI |
| MS.gene000681 | MS.gene049277 | PPI |
| MS.gene009229 | MS.gene049277 | PPI |
| MS.gene97445 | MS.gene049277 | PPI |
| MS.gene049277 | MS.gene34851 | PPI |
| MS.gene54337 | MS.gene049277 | PPI |
| MS.gene049277 | MS.gene79015 | PPI |
| MS.gene049277 | MS.gene45168 | PPI |
| MS.gene049277 | MS.gene58567 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049277.t1 | MTR_3g096390 | 96.847 | 444 | 14 | 0 | 1 | 444 | 6 | 449 | 0.0 | 910 |
| MS.gene049277.t1 | MTR_3g096390 | 96.636 | 327 | 11 | 0 | 1 | 327 | 6 | 332 | 0.0 | 670 |
| MS.gene049277.t1 | MTR_3g088845 | 62.741 | 467 | 148 | 4 | 1 | 444 | 5 | 468 | 0.0 | 624 |
| MS.gene049277.t1 | MTR_3g088845 | 70.526 | 380 | 112 | 0 | 65 | 444 | 1 | 380 | 0.0 | 593 |
| MS.gene049277.t1 | MTR_3g088845 | 61.184 | 304 | 92 | 4 | 1 | 281 | 5 | 305 | 5.19e-131 | 381 |
| MS.gene049277.t1 | MTR_8g075470 | 53.631 | 358 | 136 | 7 | 93 | 444 | 32 | 365 | 2.18e-121 | 358 |
| MS.gene049277.t1 | MTR_8g062670 | 29.290 | 338 | 217 | 7 | 85 | 413 | 50 | 374 | 9.16e-41 | 150 |
| MS.gene049277.t1 | MTR_5g036600 | 28.477 | 302 | 202 | 6 | 116 | 413 | 83 | 374 | 1.97e-35 | 135 |
| MS.gene049277.t1 | MTR_8g024310 | 26.126 | 333 | 236 | 3 | 92 | 416 | 72 | 402 | 2.02e-34 | 133 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049277.t1 | AT5G09300 | 73.418 | 395 | 105 | 0 | 50 | 444 | 78 | 472 | 0.0 | 640 |
| MS.gene049277.t1 | AT5G09300 | 73.418 | 395 | 105 | 0 | 50 | 444 | 7 | 401 | 0.0 | 639 |
| MS.gene049277.t1 | AT1G21400 | 68.750 | 400 | 125 | 0 | 45 | 444 | 73 | 472 | 0.0 | 599 |
| MS.gene049277.t1 | AT1G21400 | 69.620 | 395 | 120 | 0 | 50 | 444 | 130 | 524 | 0.0 | 599 |
| MS.gene049277.t1 | AT1G21400 | 69.720 | 393 | 119 | 0 | 52 | 444 | 5 | 397 | 0.0 | 597 |
| MS.gene049277.t1 | AT1G21400 | 70.526 | 380 | 112 | 0 | 65 | 444 | 1 | 380 | 0.0 | 581 |
| MS.gene049277.t1 | AT1G21400 | 70.526 | 380 | 112 | 0 | 65 | 444 | 1 | 380 | 0.0 | 581 |
| MS.gene049277.t1 | AT5G09300 | 75.168 | 298 | 73 | 1 | 31 | 327 | 58 | 355 | 1.72e-167 | 475 |
| MS.gene049277.t1 | AT5G09300 | 78.970 | 233 | 49 | 0 | 50 | 282 | 78 | 310 | 1.82e-137 | 398 |
| MS.gene049277.t1 | AT1G21400 | 71.121 | 232 | 67 | 0 | 50 | 281 | 130 | 361 | 5.30e-123 | 362 |
| MS.gene049277.t1 | AT5G34780 | 73.057 | 193 | 52 | 0 | 227 | 419 | 25 | 217 | 6.45e-103 | 311 |
| MS.gene049277.t1 | AT1G59900 | 26.935 | 323 | 226 | 4 | 95 | 413 | 52 | 368 | 5.24e-40 | 147 |
| MS.gene049277.t1 | AT1G59900 | 26.935 | 323 | 226 | 4 | 95 | 413 | 52 | 368 | 7.10e-40 | 147 |
| MS.gene049277.t1 | AT1G24180 | 26.239 | 343 | 241 | 5 | 95 | 431 | 56 | 392 | 9.55e-38 | 142 |
| MS.gene049277.t1 | AT1G01090 | 25.076 | 327 | 236 | 3 | 97 | 416 | 79 | 403 | 1.00e-33 | 131 |
Find 100 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGCCATTTCTCCTGTTCA+TGG | 0.273435 | 3.3:+79857375 | None:intergenic |
| AGGCAGATGCCAGCCCATTA+TGG | 0.274205 | 3.3:-79859113 | MS.gene049277:CDS |
| GATATTGTGCTTAAACTATA+TGG | 0.280847 | 3.3:+79857307 | None:intergenic |
| TTCCTTAAAGATGGACAAAA+AGG | 0.292427 | 3.3:-79858859 | MS.gene049277:CDS |
| ACAAAATCAGTCCCGAAAAT+TGG | 0.305302 | 3.3:+79860051 | None:intergenic |
| GTCCGTAGCATTCGTGTAGA+TGG | 0.320083 | 3.3:-79858175 | MS.gene049277:CDS |
| AGCTTGAACAGCACTATAAA+TGG | 0.323421 | 3.3:+79858138 | None:intergenic |
| TGAGAAGAAGTTGTTGAAGT+TGG | 0.329008 | 3.3:+79860272 | None:intergenic |
| TTTCAAATAAGTTTGATAAT+GGG | 0.330368 | 3.3:-79859142 | MS.gene049277:CDS |
| TTTCTCCTGTTCATGGAGAT+TGG | 0.340115 | 3.3:+79857382 | None:intergenic |
| TGTGCTTGTTGGACCCATAA+TGG | 0.349351 | 3.3:+79859099 | None:intergenic |
| AACTATATGGAAATATTTGT+TGG | 0.359142 | 3.3:+79857320 | None:intergenic |
| GGATGGTGGTTGGTGAAATT+AGG | 0.366836 | 3.3:+79860231 | None:intergenic |
| TACCGTGTTCTTGATGATAA+TGG | 0.369195 | 3.3:-79860078 | MS.gene049277:CDS |
| CATGGTTGCACTTCAAACTA+TGG | 0.372541 | 3.3:-79859910 | MS.gene049277:CDS |
| GCATGTGCCGTAACATATTT+CGG | 0.385578 | 3.3:-79858834 | MS.gene049277:CDS |
| CTCGTTGGCGGGACGATACT+TGG | 0.386748 | 3.3:+79857891 | None:intergenic |
| TTATAGCCCATCCATTATTC+CGG | 0.395618 | 3.3:+79858369 | None:intergenic |
| GGCAGATGCCAGCCCATTAT+GGG | 0.420042 | 3.3:-79859112 | MS.gene049277:CDS |
| ATCTATGAGCTGATCGTGAA+TGG | 0.423735 | 3.3:+79860176 | None:intergenic |
| ATTCATGTAATTGTGCTTGT+TGG | 0.423872 | 3.3:+79859088 | None:intergenic |
| TCCTGTTCATGGAGATTGGA+TGG | 0.425924 | 3.3:+79857386 | None:intergenic |
| TCCATCCAATCTCCATGAAC+AGG | 0.427742 | 3.3:-79857387 | MS.gene049277:CDS |
| GTGCTTGTTGGACCCATAAT+GGG | 0.428032 | 3.3:+79859100 | None:intergenic |
| ATCTCCATGAACAGGAGAAA+TGG | 0.428351 | 3.3:-79857379 | MS.gene049277:CDS |
| ACTATATGGAAATATTTGTT+GGG | 0.442669 | 3.3:+79857321 | None:intergenic |
| TAGGAACAGTTTGAGACAAC+AGG | 0.446713 | 3.3:-79857773 | MS.gene049277:intron |
| AGCTGCATATTCCTTAAAGA+TGG | 0.452958 | 3.3:-79858868 | MS.gene049277:CDS |
| GTTGTGAAAGGACAGGCTTA+TGG | 0.453904 | 3.3:-79858199 | MS.gene049277:CDS |
| TACACTCTCAGCAACTTGAA+TGG | 0.463732 | 3.3:+79857457 | None:intergenic |
| TACCGCTGCAAAATTTAATC+CGG | 0.464324 | 3.3:+79858418 | None:intergenic |
| CTTCGAAACTGATCTGATGT+AGG | 0.468212 | 3.3:+79858341 | None:intergenic |
| TGTTCAAGCTGCTCGTCAAA+TGG | 0.472797 | 3.3:-79858125 | MS.gene049277:CDS |
| GGGAACAAGGAGTCTTGTTA+TGG | 0.477452 | 3.3:-79859202 | MS.gene049277:CDS |
| GATTTAGAAAGTGGATAGAA+AGG | 0.480435 | 3.3:-79857831 | MS.gene049277:CDS |
| TTCGAAACTGATCTGATGTA+GGG | 0.489681 | 3.3:+79858342 | None:intergenic |
| CTGTAGCGAGATTTAGAAAG+TGG | 0.492223 | 3.3:-79857840 | MS.gene049277:CDS |
| GGATTTGAAGTAAGTGAGAA+TGG | 0.500348 | 3.3:+79860293 | None:intergenic |
| TGGAGTTAAAGCGGCGTGGA+TGG | 0.514535 | 3.3:+79860214 | None:intergenic |
| ATCAGCTGCAGCTCTTTCCA+TGG | 0.514662 | 3.3:-79859805 | MS.gene049277:CDS |
| ACGCAAATTCCCCATGCTGT+TGG | 0.515599 | 3.3:-79858891 | MS.gene049277:CDS |
| AATAAGTTTGATAATGGGAA+AGG | 0.516825 | 3.3:-79859137 | MS.gene049277:CDS |
| CCACCATTCTATCTCGTTGG+CGG | 0.520404 | 3.3:+79857879 | None:intergenic |
| CACTTTCTAAATCTCGCTAC+AGG | 0.521381 | 3.3:+79857841 | None:intergenic |
| CACCATTCTATCTCGTTGGC+GGG | 0.527457 | 3.3:+79857880 | None:intergenic |
| CGGGAAAATAACATCGTCCA+TGG | 0.528957 | 3.3:+79859788 | None:intergenic |
| TTATATGCCGGAATAATGGA+TGG | 0.534376 | 3.3:-79858376 | MS.gene049277:CDS |
| ACCATCTCCGAAATATGTTA+CGG | 0.538718 | 3.3:+79858827 | None:intergenic |
| TCTATGAGCTGATCGTGAAT+GGG | 0.538734 | 3.3:+79860177 | None:intergenic |
| TGTAGATGGGAATGATGCTC+TGG | 0.540418 | 3.3:-79858161 | MS.gene049277:CDS |
| ATATGCAGCTCCAACAGCAT+GGG | 0.542436 | 3.3:+79858881 | None:intergenic |
| GTCCCGCCAACGAGATAGAA+TGG | 0.546054 | 3.3:-79857882 | MS.gene049277:CDS |
| CGGTATTGTTGTGAAAGGAC+AGG | 0.548213 | 3.3:-79858206 | MS.gene049277:CDS |
| GAAGTAAGTGAGAATGGTTG+TGG | 0.551715 | 3.3:+79860299 | None:intergenic |
| AATATGCAGCTCCAACAGCA+TGG | 0.552307 | 3.3:+79858880 | None:intergenic |
| TCCGTAGCATTCGTGTAGAT+GGG | 0.552757 | 3.3:-79858174 | MS.gene049277:CDS |
| ACATGGCTGAGTCTGAGCTT+AGG | 0.558677 | 3.3:-79857792 | MS.gene049277:CDS |
| GGATAGAAAGGAATGGTTGG+TGG | 0.559328 | 3.3:-79857819 | MS.gene049277:CDS |
| TGACAGGGAGATTTCCATGC+CGG | 0.562203 | 3.3:-79858437 | MS.gene049277:intron |
| TTGTTGGACCCATAATGGGC+TGG | 0.564271 | 3.3:+79859104 | None:intergenic |
| CAGGCTCTTACATATAGAGT+AGG | 0.566525 | 3.3:-79857940 | MS.gene049277:CDS |
| AGTTTGATAATGGGAAAGGA+AGG | 0.568039 | 3.3:-79859133 | MS.gene049277:CDS |
| TATATGCCGGAATAATGGAT+GGG | 0.568225 | 3.3:-79858375 | MS.gene049277:CDS |
| GAAATTAGGTTTCCGACGAG+TGG | 0.569374 | 3.3:+79860245 | None:intergenic |
| CTGCAAAATTTAATCCGGCA+TGG | 0.571659 | 3.3:+79858423 | None:intergenic |
| GCCGTAACATATTTCGGAGA+TGG | 0.577923 | 3.3:-79858828 | MS.gene049277:CDS |
| CAAGGAGTCTTGTTATGGCG+TGG | 0.590052 | 3.3:-79859197 | MS.gene049277:CDS |
| ATATTTGTTGGGTAAACATG+TGG | 0.592694 | 3.3:+79857332 | None:intergenic |
| CTTGGTAGAGTCATCTGATG+TGG | 0.593776 | 3.3:+79857909 | None:intergenic |
| TGATGCTGTTTAGGTTAGTG+AGG | 0.595546 | 3.3:-79859958 | MS.gene049277:intron |
| AGTGGATAGAAAGGAATGGT+TGG | 0.596393 | 3.3:-79857822 | MS.gene049277:CDS |
| CGGAGATGGTGGTTCAAGTG+AGG | 0.598055 | 3.3:-79858814 | MS.gene049277:intron |
| TCACTAAACATGCCTGCAAG+TGG | 0.602110 | 3.3:+79857425 | None:intergenic |
| TTCTATGAAGCACAAAGACA+AGG | 0.602730 | 3.3:-79859879 | MS.gene049277:CDS |
| AGAAAGTGGATAGAAAGGAA+TGG | 0.604364 | 3.3:-79857826 | MS.gene049277:CDS |
| TCTCCACCATTCTATCTCGT+TGG | 0.604472 | 3.3:+79857876 | None:intergenic |
| GTAACATATTTCGGAGATGG+TGG | 0.604520 | 3.3:-79858825 | MS.gene049277:CDS |
| CTAAACATGCCTGCAAGTGG+AGG | 0.606397 | 3.3:+79857428 | None:intergenic |
| TTGTTGGGTAAACATGTGGA+TGG | 0.606418 | 3.3:+79857336 | None:intergenic |
| TCTTCTCATCTTCCACTCGT+CGG | 0.607029 | 3.3:-79860257 | MS.gene049277:CDS |
| AGTTAAAGCGGCGTGGATGG+TGG | 0.609821 | 3.3:+79860217 | None:intergenic |
| TCATCAAGAACACGGTAACA+AGG | 0.609922 | 3.3:+79860084 | None:intergenic |
| ATGAATTTGACATTTCCACC+AGG | 0.617542 | 3.3:+79860150 | None:intergenic |
| TCCCATCTACACGAATGCTA+CGG | 0.620589 | 3.3:+79858173 | None:intergenic |
| CACCATTATCATCAAGAACA+CGG | 0.621664 | 3.3:+79860076 | None:intergenic |
| TGAACAGGAGAAATGGCTGA+AGG | 0.622098 | 3.3:-79857372 | MS.gene049277:CDS |
| GGTGACGGTATTGTTGTGAA+AGG | 0.624075 | 3.3:-79858211 | MS.gene049277:CDS |
| GAGCAGTGGTGGAGTTAAAG+CGG | 0.626711 | 3.3:+79860205 | None:intergenic |
| TATGCAGCTCCAACAGCATG+GGG | 0.649008 | 3.3:+79858882 | None:intergenic |
| AAAGCGGCGTGGATGGTGGT+TGG | 0.649937 | 3.3:+79860221 | None:intergenic |
| TGTGTGCAGTATAGGGAACA+AGG | 0.650480 | 3.3:-79859215 | MS.gene049277:intron |
| AATGGGATTATGAGCAGTGG+TGG | 0.651439 | 3.3:+79860194 | None:intergenic |
| TGTTAAAATGTACAATGACA+TGG | 0.664765 | 3.3:-79859928 | MS.gene049277:CDS |
| TAGAGTCATCTGATGTGGAG+TGG | 0.674103 | 3.3:+79857914 | None:intergenic |
| GAATGGTTGGTGGAATGACA+TGG | 0.675261 | 3.3:-79857809 | MS.gene049277:CDS |
| TCGAAACTGATCTGATGTAG+GGG | 0.680340 | 3.3:+79858343 | None:intergenic |
| TGTTCATGGAGATTGGATGG+AGG | 0.693865 | 3.3:+79857389 | None:intergenic |
| GTGGTGGAGTTAAAGCGGCG+TGG | 0.695513 | 3.3:+79860210 | None:intergenic |
| CCGCCAACGAGATAGAATGG+TGG | 0.712027 | 3.3:-79857879 | MS.gene049277:CDS |
| GTGAATGGGATTATGAGCAG+TGG | 0.719730 | 3.3:+79860191 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATTCATACTTTCAT+TGG | - | chr3.3:79858314-79858333 | MS.gene049277:intron | 15.0% |
| !! | AAAAAATTCATACTTTCATT+GGG | - | chr3.3:79858315-79858334 | MS.gene049277:intron | 15.0% |
| !! | AAGAAAATAATTGAAATAGA+AGG | + | chr3.3:79859332-79859351 | None:intergenic | 15.0% |
| !!! | AATATTTAACAATGCTTTTA+TGG | + | chr3.3:79860120-79860139 | None:intergenic | 15.0% |
| !!! | AATTTTCTTGAATTTGATTT+AGG | - | chr3.3:79860089-79860108 | MS.gene049277:CDS | 15.0% |
| !!! | ATTACTACTAATATTTTTGT+TGG | - | chr3.3:79858645-79858664 | MS.gene049277:intron | 15.0% |
| !!! | TTAAACTTAATATCGTTTTT+TGG | - | chr3.3:79858993-79859012 | MS.gene049277:intron | 15.0% |
| !!! | TTTCAAATAAGTTTGATAAT+GGG | - | chr3.3:79858492-79858511 | MS.gene049277:intron | 15.0% |
| !!! | TTTTCAAATAAGTTTGATAA+TGG | - | chr3.3:79858491-79858510 | MS.gene049277:intron | 15.0% |
| !! | AAAAAAATCTTAACATATCG+AGG | + | chr3.3:79859136-79859155 | None:intergenic | 20.0% |
| !! | ACTTTCAATTTCAAAATTGT+TGG | + | chr3.3:79858691-79858710 | None:intergenic | 20.0% |
| !! | CTTTCAATTTCAAAATTGTT+GGG | + | chr3.3:79858690-79858709 | None:intergenic | 20.0% |
| !! | TCAACAGTAAATTATTATCA+AGG | - | chr3.3:79859108-79859127 | MS.gene049277:CDS | 20.0% |
| !!! | AATATATTTGAAACAGAACT+AGG | + | chr3.3:79859935-79859954 | None:intergenic | 20.0% |
| !!! | ATATATTTGAAACAGAACTA+GGG | + | chr3.3:79859934-79859953 | None:intergenic | 20.0% |
| !!! | CATTTTACTTCTATTAGAAT+TGG | + | chr3.3:79859552-79859571 | None:intergenic | 20.0% |
| !!! | TCATTTTATGTAACTACAAA+TGG | - | chr3.3:79857785-79857804 | MS.gene049277:CDS | 20.0% |
| !!! | TTAAAATTTTGAAGGAGTTT+AGG | - | chr3.3:79858941-79858960 | MS.gene049277:intron | 20.0% |
| !!! | TTAATATCGTTTTTTGGTTT+AGG | - | chr3.3:79858999-79859018 | MS.gene049277:intron | 20.0% |
| !!! | TTTTGCTACGAAATATTTTA+AGG | + | chr3.3:79860048-79860067 | None:intergenic | 20.0% |
| !!! | TTTTGCTCTTAAAATTTTGA+AGG | - | chr3.3:79858933-79858952 | MS.gene049277:intron | 20.0% |
| ! | ACAGAAATTTCCATTCAATA+AGG | + | chr3.3:79858885-79858904 | None:intergenic | 25.0% |
| ! | AGAAATTTCCATTCAATAAG+GGG | + | chr3.3:79858883-79858902 | None:intergenic | 25.0% |
| ! | ATTTCGTAGCAAAAAATTTG+CGG | - | chr3.3:79860054-79860073 | MS.gene049277:CDS | 25.0% |
| ! | ATTTCTCATATTGTAATGCA+AGG | + | chr3.3:79858278-79858297 | None:intergenic | 25.0% |
| ! | CAGAAATTTCCATTCAATAA+GGG | + | chr3.3:79858884-79858903 | None:intergenic | 25.0% |
| ! | CTATCACACACTTATTTAAT+GGG | + | chr3.3:79859075-79859094 | None:intergenic | 25.0% |
| ! | GGACATGTTTAAAAGAAAAA+TGG | - | chr3.3:79859595-79859614 | MS.gene049277:intron | 25.0% |
| ! | TATACATACTAAGCATATTG+TGG | + | chr3.3:79858177-79858196 | None:intergenic | 25.0% |
| ! | TCAGTTTCGAAGTAATTTAT+CGG | - | chr3.3:79859304-79859323 | MS.gene049277:intron | 25.0% |
| ! | TCTATCACACACTTATTTAA+TGG | + | chr3.3:79859076-79859095 | None:intergenic | 25.0% |
| ! | TGTTAAAATGTACAATGACA+TGG | - | chr3.3:79857706-79857725 | MS.gene049277:intron | 25.0% |
| ! | TGTTAAATTTCACTACATTG+AGG | + | chr3.3:79858227-79858246 | None:intergenic | 25.0% |
| !! | AGTTGCATAGAATTTTTGTT+AGG | - | chr3.3:79859024-79859043 | MS.gene049277:intron | 25.0% |
| !! | ATCAACCAAATGATTTTTCA+GGG | + | chr3.3:79859903-79859922 | None:intergenic | 25.0% |
| !! | ATTTTTATATGCCGGAATAA+TGG | - | chr3.3:79859254-79859273 | MS.gene049277:intron | 25.0% |
| !! | CAGATAAAAATGTCATTTGA+GGG | + | chr3.3:79857510-79857529 | None:intergenic | 25.0% |
| !! | TATCAACCAAATGATTTTTC+AGG | + | chr3.3:79859904-79859923 | None:intergenic | 25.0% |
| !! | TCAGATAAAAATGTCATTTG+AGG | + | chr3.3:79857511-79857530 | None:intergenic | 25.0% |
| !!! | AATAAGTTTGATAATGGGAA+AGG | - | chr3.3:79858497-79858516 | MS.gene049277:intron | 25.0% |
| !!! | ATATAATTTTGATCAACCTG+CGG | + | chr3.3:79857869-79857888 | None:intergenic | 25.0% |
| ACACACTTATTTAATGGGAT+GGG | + | chr3.3:79859070-79859089 | None:intergenic | 30.0% | |
| AGAAGAAACAGATACAACAT+TGG | + | chr3.3:79859667-79859686 | None:intergenic | 30.0% | |
| ATATAGTGTTGTCAAATAGC+AGG | - | chr3.3:79858194-79858213 | MS.gene049277:CDS | 30.0% | |
| ATCTTCTGTAAGATCATTTC+TGG | + | chr3.3:79858390-79858409 | None:intergenic | 30.0% | |
| ATTCATGTAATTGTGCTTGT+TGG | + | chr3.3:79858549-79858568 | None:intergenic | 30.0% | |
| CGATAGCAAAAGATAAAACA+AGG | - | chr3.3:79857905-79857924 | MS.gene049277:CDS | 30.0% | |
| CTCATATTGAAGCATGTTAA+CGG | - | chr3.3:79859637-79859656 | MS.gene049277:intron | 30.0% | |
| GATGAATGAAATGAAAGTGA+AGG | + | chr3.3:79857632-79857651 | None:intergenic | 30.0% | |
| GATTTAGAAAGTGGATAGAA+AGG | - | chr3.3:79859803-79859822 | MS.gene049277:CDS | 30.0% | |
| TATACTAATGCAATTGACAC+AGG | - | chr3.3:79859991-79860010 | MS.gene049277:intron | 30.0% | |
| TATCTAACGATATATTGTGC+TGG | - | chr3.3:79859382-79859401 | MS.gene049277:intron | 30.0% | |
| TCAAACAAGTCAATACAAAC+AGG | - | chr3.3:79858074-79858093 | MS.gene049277:intron | 30.0% | |
| TCCGGCATATAAAAATAACT+GGG | + | chr3.3:79859250-79859269 | None:intergenic | 30.0% | |
| TGTACAATGTTGTCAAATAG+TGG | - | chr3.3:79858101-79858120 | MS.gene049277:CDS | 30.0% | |
| TGTGTCAATTGCATTAGTAT+AGG | + | chr3.3:79859992-79860011 | None:intergenic | 30.0% | |
| TTCCGGCATATAAAAATAAC+TGG | + | chr3.3:79859251-79859270 | None:intergenic | 30.0% | |
| TTCCTTAAAGATGGACAAAA+AGG | - | chr3.3:79858775-79858794 | MS.gene049277:intron | 30.0% | |
| ! | ATAATGGTGAACCAATTTTC+GGG | - | chr3.3:79857572-79857591 | MS.gene049277:intron | 30.0% |
| ! | ATATTTGTTGGGTAAACATG+TGG | + | chr3.3:79860305-79860324 | None:intergenic | 30.0% |
| ! | ATCCTTTTTGTCCATCTTTA+AGG | + | chr3.3:79858780-79858799 | None:intergenic | 30.0% |
| ! | ATTAAATTTTGCAGCGGTAA+TGG | - | chr3.3:79859220-79859239 | MS.gene049277:intron | 30.0% |
| ! | CTACTTACATAAATTTTGCG+AGG | + | chr3.3:79858048-79858067 | None:intergenic | 30.0% |
| ! | CTTAGAAATTGATGCTGTTT+AGG | - | chr3.3:79857667-79857686 | MS.gene049277:intron | 30.0% |
| ! | CTTTTCCCTGAAAAATCATT+TGG | - | chr3.3:79859895-79859914 | MS.gene049277:CDS | 30.0% |
| ! | TATTGATTGTGTGCAGTATA+GGG | - | chr3.3:79858412-79858431 | MS.gene049277:CDS | 30.0% |
| ! | TTATTGATTGTGTGCAGTAT+AGG | - | chr3.3:79858411-79858430 | MS.gene049277:CDS | 30.0% |
| !! | AACCTTTGAAGTCAAATCTT+TGG | - | chr3.3:79859574-79859593 | MS.gene049277:intron | 30.0% |
| !! | GATAATGGTGAACCAATTTT+CGG | - | chr3.3:79857571-79857590 | MS.gene049277:intron | 30.0% |
| !! | TATAATTTTGATCAACCTGC+GGG | + | chr3.3:79857868-79857887 | None:intergenic | 30.0% |
| !! | TGTGCTATTTAAACATGTCA+TGG | - | chr3.3:79858902-79858921 | MS.gene049277:intron | 30.0% |
| AAAGAAAAATGGCAGTATGC+TGG | - | chr3.3:79859606-79859625 | MS.gene049277:intron | 35.0% | |
| AATGCAATTGACACAGGTAT+GGG | - | chr3.3:79859997-79860016 | MS.gene049277:intron | 35.0% | |
| ACAAAATCAGTCCCGAAAAT+TGG | + | chr3.3:79857586-79857605 | None:intergenic | 35.0% | |
| ACCATCTCCGAAATATGTTA+CGG | + | chr3.3:79858810-79858829 | None:intergenic | 35.0% | |
| AGAAAGTGGATAGAAAGGAA+TGG | - | chr3.3:79859808-79859827 | MS.gene049277:CDS | 35.0% | |
| AGCTGCATATTCCTTAAAGA+TGG | - | chr3.3:79858766-79858785 | MS.gene049277:intron | 35.0% | |
| AGCTTGAACAGCACTATAAA+TGG | + | chr3.3:79859499-79859518 | None:intergenic | 35.0% | |
| AGGTTATACTGTATCACTCT+CGG | - | chr3.3:79858961-79858980 | MS.gene049277:intron | 35.0% | |
| ATGAATTTGACATTTCCACC+AGG | + | chr3.3:79857487-79857506 | None:intergenic | 35.0% | |
| ATTGAGTTATGAGCTATGAC+AGG | - | chr3.3:79859181-79859200 | MS.gene049277:CDS | 35.0% | |
| CACACACTTATTTAATGGGA+TGG | + | chr3.3:79859071-79859090 | None:intergenic | 35.0% | |
| CACCATTATCATCAAGAACA+CGG | + | chr3.3:79857561-79857580 | None:intergenic | 35.0% | |
| CCGGCATATAAAAATAACTG+GGG | + | chr3.3:79859249-79859268 | None:intergenic | 35.0% | |
| GAATGAAATGAAAGTGAAGG+TGG | + | chr3.3:79857629-79857648 | None:intergenic | 35.0% | |
| TAATGCAAGGTTGTCAATTG+TGG | + | chr3.3:79858265-79858284 | None:intergenic | 35.0% | |
| TAATGCAATTGACACAGGTA+TGG | - | chr3.3:79859996-79860015 | MS.gene049277:intron | 35.0% | |
| TACCGCTGCAAAATTTAATC+CGG | + | chr3.3:79859219-79859238 | None:intergenic | 35.0% | |
| TCCTGTTTATACATAGGTGA+CGG | - | chr3.3:79859408-79859427 | MS.gene049277:intron | 35.0% | |
| TGAGAAGAAGTTGTTGAAGT+TGG | + | chr3.3:79857365-79857384 | None:intergenic | 35.0% | |
| TGGTGTTCCTGTTTATACAT+AGG | - | chr3.3:79859402-79859421 | MS.gene049277:intron | 35.0% | |
| TTATAGCCCATCCATTATTC+CGG | + | chr3.3:79859268-79859287 | None:intergenic | 35.0% | |
| TTCGAAACTGATCTGATGTA+GGG | + | chr3.3:79859295-79859314 | None:intergenic | 35.0% | |
| TTCTATGAAGCACAAAGACA+AGG | - | chr3.3:79857755-79857774 | MS.gene049277:intron | 35.0% | |
| TTGAGTTATGAGCTATGACA+GGG | - | chr3.3:79859182-79859201 | MS.gene049277:CDS | 35.0% | |
| ! | GGATTTGAAGTAAGTGAGAA+TGG | + | chr3.3:79857344-79857363 | None:intergenic | 35.0% |
| ! | GTCCAAAGATTTGACTTCAA+AGG | + | chr3.3:79859579-79859598 | None:intergenic | 35.0% |
| ! | TAAATTTTGCGAGGCTGTTT+AGG | + | chr3.3:79858039-79858058 | None:intergenic | 35.0% |
| ! | TACCGTGTTCTTGATGATAA+TGG | - | chr3.3:79857556-79857575 | MS.gene049277:intron | 35.0% |
| ! | TTATATGCCGGAATAATGGA+TGG | - | chr3.3:79859258-79859277 | MS.gene049277:intron | 35.0% |
| !! | AGTTTGATAATGGGAAAGGA+AGG | - | chr3.3:79858501-79858520 | MS.gene049277:intron | 35.0% |
| !! | TATATGCCGGAATAATGGAT+GGG | - | chr3.3:79859259-79859278 | MS.gene049277:intron | 35.0% |
| !!! | CCCCAGTTATTTTTATATGC+CGG | - | chr3.3:79859246-79859265 | MS.gene049277:intron | 35.0% |
| !!! | TCTGTTTCTTCTGTTTTTGC+AGG | - | chr3.3:79859675-79859694 | MS.gene049277:intron | 35.0% |
| ACCGTCACCTATGTATAAAC+AGG | + | chr3.3:79859412-79859431 | None:intergenic | 40.0% | |
| AGTGGATAGAAAGGAATGGT+TGG | - | chr3.3:79859812-79859831 | MS.gene049277:CDS | 40.0% | |
| ATACTAAGCATATTGTGGCG+CGG | + | chr3.3:79858172-79858191 | None:intergenic | 40.0% | |
| ATCTATGAGCTGATCGTGAA+TGG | + | chr3.3:79857461-79857480 | None:intergenic | 40.0% | |
| ATCTCCATGAACAGGAGAAA+TGG | - | chr3.3:79860255-79860274 | MS.gene049277:CDS | 40.0% | |
| ATGCAATTGACACAGGTATG+GGG | - | chr3.3:79859998-79860017 | MS.gene049277:intron | 40.0% | |
| CACTTTCTAAATCTCGCTAC+AGG | + | chr3.3:79859796-79859815 | None:intergenic | 40.0% | |
| CAGCGACGATTACAAATTCA+TGG | + | chr3.3:79859958-79859977 | None:intergenic | 40.0% | |
| CAGGCTCTTACATATAGAGT+AGG | - | chr3.3:79859694-79859713 | MS.gene049277:intron | 40.0% | |
| CATGGTTGCACTTCAAACTA+TGG | - | chr3.3:79857724-79857743 | MS.gene049277:intron | 40.0% | |
| CTGCAAAATTTAATCCGGCA+TGG | + | chr3.3:79859214-79859233 | None:intergenic | 40.0% | |
| CTGTAGCGAGATTTAGAAAG+TGG | - | chr3.3:79859794-79859813 | MS.gene049277:CDS | 40.0% | |
| CTTCGAAACTGATCTGATGT+AGG | + | chr3.3:79859296-79859315 | None:intergenic | 40.0% | |
| GAAGTAAGTGAGAATGGTTG+TGG | + | chr3.3:79857338-79857357 | None:intergenic | 40.0% | |
| GCATGTGCCGTAACATATTT+CGG | - | chr3.3:79858800-79858819 | MS.gene049277:intron | 40.0% | |
| GTAACATATTTCGGAGATGG+TGG | - | chr3.3:79858809-79858828 | MS.gene049277:intron | 40.0% | |
| TACACTCTCAGCAACTTGAA+TGG | + | chr3.3:79860180-79860199 | None:intergenic | 40.0% | |
| TCATCAAGAACACGGTAACA+AGG | + | chr3.3:79857553-79857572 | None:intergenic | 40.0% | |
| TCGAAACTGATCTGATGTAG+GGG | + | chr3.3:79859294-79859313 | None:intergenic | 40.0% | |
| TCTATGAGCTGATCGTGAAT+GGG | + | chr3.3:79857460-79857479 | None:intergenic | 40.0% | |
| TTGTTGGGTAAACATGTGGA+TGG | + | chr3.3:79860301-79860320 | None:intergenic | 40.0% | |
| TTTCTCCTGTTCATGGAGAT+TGG | + | chr3.3:79860255-79860274 | None:intergenic | 40.0% | |
| ! | GATCAGCTCATAGATTTTCC+TGG | - | chr3.3:79857466-79857485 | MS.gene049277:CDS | 40.0% |
| ! | GTATGGGGTATCTGATTACT+TGG | - | chr3.3:79860013-79860032 | MS.gene049277:intron | 40.0% |
| ! | TAGGAACAGTTTGAGACAAC+AGG | - | chr3.3:79859861-79859880 | MS.gene049277:CDS | 40.0% |
| ! | TGATGCTGTTTAGGTTAGTG+AGG | - | chr3.3:79857676-79857695 | MS.gene049277:intron | 40.0% |
| ! | TGCCGGATTAAATTTTGCAG+CGG | - | chr3.3:79859214-79859233 | MS.gene049277:intron | 40.0% |
| !! | AAATTTTGCAGCGGTAATGG+AGG | - | chr3.3:79859223-79859242 | MS.gene049277:intron | 40.0% |
| !! | TTTCGGGACTGATTTTGTTC+AGG | - | chr3.3:79857588-79857607 | MS.gene049277:intron | 40.0% |
| AATATGCAGCTCCAACAGCA+TGG | + | chr3.3:79858757-79858776 | None:intergenic | 45.0% | |
| AATGGGATTATGAGCAGTGG+TGG | + | chr3.3:79857443-79857462 | None:intergenic | 45.0% | |
| ATATGCAGCTCCAACAGCAT+GGG | + | chr3.3:79858756-79858775 | None:intergenic | 45.0% | |
| CGGGAAAATAACATCGTCCA+TGG | + | chr3.3:79857849-79857868 | None:intergenic | 45.0% | |
| CGGTATTGTTGTGAAAGGAC+AGG | - | chr3.3:79859428-79859447 | MS.gene049277:intron | 45.0% | |
| CTTGGTAGAGTCATCTGATG+TGG | + | chr3.3:79859728-79859747 | None:intergenic | 45.0% | |
| GAAATTAGGTTTCCGACGAG+TGG | + | chr3.3:79857392-79857411 | None:intergenic | 45.0% | |
| GCCGTAACATATTTCGGAGA+TGG | - | chr3.3:79858806-79858825 | MS.gene049277:intron | 45.0% | |
| GGATAGAAAGGAATGGTTGG+TGG | - | chr3.3:79859815-79859834 | MS.gene049277:CDS | 45.0% | |
| GTAGAAAAACCTCCACTTGC+AGG | - | chr3.3:79860197-79860216 | MS.gene049277:CDS | 45.0% | |
| GTGAATGGGATTATGAGCAG+TGG | + | chr3.3:79857446-79857465 | None:intergenic | 45.0% | |
| GTTGTGAAAGGACAGGCTTA+TGG | - | chr3.3:79859435-79859454 | MS.gene049277:intron | 45.0% | |
| TAGAGTCATCTGATGTGGAG+TGG | + | chr3.3:79859723-79859742 | None:intergenic | 45.0% | |
| TCACTAAACATGCCTGCAAG+TGG | + | chr3.3:79860212-79860231 | None:intergenic | 45.0% | |
| TCAGCCATTTCTCCTGTTCA+TGG | + | chr3.3:79860262-79860281 | None:intergenic | 45.0% | |
| TCCATCCAATCTCCATGAAC+AGG | - | chr3.3:79860247-79860266 | MS.gene049277:CDS | 45.0% | |
| TCCCATCTACACGAATGCTA+CGG | + | chr3.3:79859464-79859483 | None:intergenic | 45.0% | |
| TCCGTAGCATTCGTGTAGAT+GGG | - | chr3.3:79859460-79859479 | MS.gene049277:intron | 45.0% | |
| TCCTGTTCATGGAGATTGGA+TGG | + | chr3.3:79860251-79860270 | None:intergenic | 45.0% | |
| TCGCTTCTCCCCTTATTGAA+TGG | - | chr3.3:79858872-79858891 | MS.gene049277:CDS | 45.0% | |
| TCTCCACCATTCTATCTCGT+TGG | + | chr3.3:79859761-79859780 | None:intergenic | 45.0% | |
| TCTTCTCATCTTCCACTCGT+CGG | - | chr3.3:79857377-79857396 | MS.gene049277:CDS | 45.0% | |
| TGAACAGGAGAAATGGCTGA+AGG | - | chr3.3:79860262-79860281 | MS.gene049277:CDS | 45.0% | |
| TGGTCTGTAGAAGCTGTAAC+AGG | + | chr3.3:79860160-79860179 | None:intergenic | 45.0% | |
| TGTAGATGGGAATGATGCTC+TGG | - | chr3.3:79859473-79859492 | MS.gene049277:intron | 45.0% | |
| TGTGTGCAGTATAGGGAACA+AGG | - | chr3.3:79858419-79858438 | MS.gene049277:CDS | 45.0% | |
| TGTTCAAGCTGCTCGTCAAA+TGG | - | chr3.3:79859509-79859528 | MS.gene049277:intron | 45.0% | |
| TGTTCATGGAGATTGGATGG+AGG | + | chr3.3:79860248-79860267 | None:intergenic | 45.0% | |
| ! | CAGCTCATAGATTTTCCTGG+TGG | - | chr3.3:79857469-79857488 | MS.gene049277:CDS | 45.0% |
| ! | GGTGACGGTATTGTTGTGAA+AGG | - | chr3.3:79859423-79859442 | MS.gene049277:intron | 45.0% |
| ! | GTGCTTGTTGGACCCATAAT+GGG | + | chr3.3:79858537-79858556 | None:intergenic | 45.0% |
| ! | TGTGCTTGTTGGACCCATAA+TGG | + | chr3.3:79858538-79858557 | None:intergenic | 45.0% |
| !! | GAATGGTTGGTGGAATGACA+TGG | - | chr3.3:79859825-79859844 | MS.gene049277:CDS | 45.0% |
| !! | GAGAAGCGAGTCTGCTTTTA+TGG | + | chr3.3:79858861-79858880 | None:intergenic | 45.0% |
| !! | GGATGGTGGTTGGTGAAATT+AGG | + | chr3.3:79857406-79857425 | None:intergenic | 45.0% |
| !! | GGGAACAAGGAGTCTTGTTA+TGG | - | chr3.3:79858432-79858451 | MS.gene049277:CDS | 45.0% |
| ACATGGCTGAGTCTGAGCTT+AGG | - | chr3.3:79859842-79859861 | MS.gene049277:CDS | 50.0% | |
| ACGCAAATTCCCCATGCTGT+TGG | - | chr3.3:79858743-79858762 | MS.gene049277:intron | 50.0% | |
| ATCAGCTGCAGCTCTTTCCA+TGG | - | chr3.3:79857829-79857848 | MS.gene049277:CDS | 50.0% | |
| CACCATTCTATCTCGTTGGC+GGG | + | chr3.3:79859757-79859776 | None:intergenic | 50.0% | |
| CCACCATTCTATCTCGTTGG+CGG | + | chr3.3:79859758-79859777 | None:intergenic | 50.0% | |
| CTAAACATGCCTGCAAGTGG+AGG | + | chr3.3:79860209-79860228 | None:intergenic | 50.0% | |
| GTCCGTAGCATTCGTGTAGA+TGG | - | chr3.3:79859459-79859478 | MS.gene049277:intron | 50.0% | |
| TATGCAGCTCCAACAGCATG+GGG | + | chr3.3:79858755-79858774 | None:intergenic | 50.0% | |
| TGACAGGGAGATTTCCATGC+CGG | - | chr3.3:79859197-79859216 | MS.gene049277:CDS | 50.0% | |
| ! | GAGCAGTGGTGGAGTTAAAG+CGG | + | chr3.3:79857432-79857451 | None:intergenic | 50.0% |
| !! | CAAGGAGTCTTGTTATGGCG+TGG | - | chr3.3:79858437-79858456 | MS.gene049277:intron | 50.0% |
| !! | TTGTTGGACCCATAATGGGC+TGG | + | chr3.3:79858533-79858552 | None:intergenic | 50.0% |
| !!! | GGACGATGTTATTTTCCCGC+AGG | - | chr3.3:79857850-79857869 | MS.gene049277:CDS | 50.0% |
| AGGCAGATGCCAGCCCATTA+TGG | - | chr3.3:79858521-79858540 | MS.gene049277:intron | 55.0% | |
| AGTTAAAGCGGCGTGGATGG+TGG | + | chr3.3:79857420-79857439 | None:intergenic | 55.0% | |
| CCGCCAACGAGATAGAATGG+TGG | - | chr3.3:79859755-79859774 | MS.gene049277:intron | 55.0% | |
| GGCAGATGCCAGCCCATTAT+GGG | - | chr3.3:79858522-79858541 | MS.gene049277:intron | 55.0% | |
| GTCCCGCCAACGAGATAGAA+TGG | - | chr3.3:79859752-79859771 | MS.gene049277:intron | 55.0% | |
| TGGAGTTAAAGCGGCGTGGA+TGG | + | chr3.3:79857423-79857442 | None:intergenic | 55.0% | |
| ! | CGGAGATGGTGGTTCAAGTG+AGG | - | chr3.3:79858820-79858839 | MS.gene049277:CDS | 55.0% |
| CTCGTTGGCGGGACGATACT+TGG | + | chr3.3:79859746-79859765 | None:intergenic | 60.0% | |
| ! | AAAGCGGCGTGGATGGTGGT+TGG | + | chr3.3:79857416-79857435 | None:intergenic | 60.0% |
| ! | GTGGTGGAGTTAAAGCGGCG+TGG | + | chr3.3:79857427-79857446 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 79857322 | 79860334 | 79857322 | ID=MS.gene049277 |
| chr3.3 | mRNA | 79857322 | 79860334 | 79857322 | ID=MS.gene049277.t1;Parent=MS.gene049277 |
| chr3.3 | exon | 79860047 | 79860334 | 79860047 | ID=MS.gene049277.t1.exon1;Parent=MS.gene049277.t1 |
| chr3.3 | CDS | 79860047 | 79860334 | 79860047 | ID=cds.MS.gene049277.t1;Parent=MS.gene049277.t1 |
| chr3.3 | exon | 79859785 | 79859967 | 79859785 | ID=MS.gene049277.t1.exon2;Parent=MS.gene049277.t1 |
| chr3.3 | CDS | 79859785 | 79859967 | 79859785 | ID=cds.MS.gene049277.t1;Parent=MS.gene049277.t1 |
| chr3.3 | exon | 79859071 | 79859228 | 79859071 | ID=MS.gene049277.t1.exon3;Parent=MS.gene049277.t1 |
| chr3.3 | CDS | 79859071 | 79859228 | 79859071 | ID=cds.MS.gene049277.t1;Parent=MS.gene049277.t1 |
| chr3.3 | exon | 79858815 | 79858914 | 79858815 | ID=MS.gene049277.t1.exon4;Parent=MS.gene049277.t1 |
| chr3.3 | CDS | 79858815 | 79858914 | 79858815 | ID=cds.MS.gene049277.t1;Parent=MS.gene049277.t1 |
| chr3.3 | exon | 79858342 | 79858453 | 79858342 | ID=MS.gene049277.t1.exon5;Parent=MS.gene049277.t1 |
| chr3.3 | CDS | 79858342 | 79858453 | 79858342 | ID=cds.MS.gene049277.t1;Parent=MS.gene049277.t1 |
| chr3.3 | exon | 79858093 | 79858232 | 79858093 | ID=MS.gene049277.t1.exon6;Parent=MS.gene049277.t1 |
| chr3.3 | CDS | 79858093 | 79858232 | 79858093 | ID=cds.MS.gene049277.t1;Parent=MS.gene049277.t1 |
| chr3.3 | exon | 79857774 | 79857959 | 79857774 | ID=MS.gene049277.t1.exon7;Parent=MS.gene049277.t1 |
| chr3.3 | CDS | 79857774 | 79857959 | 79857774 | ID=cds.MS.gene049277.t1;Parent=MS.gene049277.t1 |
| chr3.3 | exon | 79857322 | 79857489 | 79857322 | ID=MS.gene049277.t1.exon8;Parent=MS.gene049277.t1 |
| chr3.3 | CDS | 79857322 | 79857489 | 79857322 | ID=cds.MS.gene049277.t1;Parent=MS.gene049277.t1 |
| Gene Sequence |
| Protein sequence |
