AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene013304


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene013304.t1 MTR_3g096390 96.396 444 16 0 1 444 6 449 0.0 906
MS.gene013304.t1 MTR_3g096390 96.024 327 13 0 1 327 6 332 0.0 665
MS.gene013304.t1 MTR_3g088845 64.758 454 145 3 1 444 20 468 0.0 624
MS.gene013304.t1 MTR_3g088845 70.789 380 111 0 65 444 1 380 0.0 595
MS.gene013304.t1 MTR_3g088845 72.689 238 65 0 44 281 68 305 1.34e-130 380
MS.gene013304.t1 MTR_8g075470 53.631 358 136 7 93 444 32 365 2.17e-122 360
MS.gene013304.t1 MTR_8g062670 29.586 338 216 7 85 413 50 374 8.48e-42 152
MS.gene013304.t1 MTR_5g036600 28.808 302 201 6 116 413 83 374 2.15e-36 138
MS.gene013304.t1 MTR_8g024310 26.126 333 236 3 92 416 72 402 1.10e-34 134
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene013304.t1 AT5G09300 70.843 415 120 1 31 444 58 472 0.0 639
MS.gene013304.t1 AT5G09300 73.418 395 105 0 50 444 7 401 0.0 638
MS.gene013304.t1 AT1G21400 68.750 400 125 0 45 444 73 472 0.0 602
MS.gene013304.t1 AT1G21400 69.620 395 120 0 50 444 130 524 0.0 601
MS.gene013304.t1 AT1G21400 69.367 395 121 0 50 444 3 397 0.0 598
MS.gene013304.t1 AT1G21400 70.526 380 112 0 65 444 1 380 0.0 583
MS.gene013304.t1 AT1G21400 70.526 380 112 0 65 444 1 380 0.0 583
MS.gene013304.t1 AT5G09300 75.168 298 73 1 31 327 58 355 9.14e-168 476
MS.gene013304.t1 AT5G09300 74.308 253 64 1 31 282 58 310 1.29e-137 399
MS.gene013304.t1 AT1G21400 71.121 232 67 0 50 281 130 361 1.91e-123 363
MS.gene013304.t1 AT5G34780 73.057 193 52 0 227 419 25 217 3.37e-103 311
MS.gene013304.t1 AT1G59900 26.935 323 226 4 95 413 52 368 2.12e-40 149
MS.gene013304.t1 AT1G59900 26.935 323 226 4 95 413 52 368 2.68e-40 149
MS.gene013304.t1 AT1G24180 26.239 343 241 5 95 431 56 392 3.45e-38 143
MS.gene013304.t1 AT1G01090 24.771 327 237 3 97 416 79 403 2.43e-33 130

Find 109 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGTGGTGGGTGGTGAAATT+AGG 0.225113 3.4:+87293843 None:intergenic
TCAGCCATTTCTCCTGTTCA+TGG 0.273435 3.4:+87291012 None:intergenic
AGGCAGATGCCAGCCCATTA+TGG 0.274205 3.4:-87292751 MS.gene013304:CDS
GATATTGTGCTTAAACTATA+TGG 0.280847 3.4:+87290944 None:intergenic
TTCCTTAAAGATGGACAAAA+AGG 0.292427 3.4:-87292497 MS.gene013304:CDS
ACAAAATCAGTCCCGAAAAT+TGG 0.305302 3.4:+87293663 None:intergenic
AGTTAAAGCGGCGTGGGTGG+TGG 0.319787 3.4:+87293829 None:intergenic
GTCCGTAGCATTCGTGTAGA+TGG 0.320083 3.4:-87291812 MS.gene013304:CDS
AGCTTGAACAGCACTATAAA+TGG 0.323421 3.4:+87291775 None:intergenic
TGAGAAGAAGTTGTTGAAGT+TGG 0.329008 3.4:+87293884 None:intergenic
TTTCAAATAAGTTTGATAAT+GGG 0.330368 3.4:-87292780 MS.gene013304:CDS
TTTCTCCTGTTCATGGAGAT+TGG 0.340115 3.4:+87291019 None:intergenic
TGTGCTTGTTGGACCCATAA+TGG 0.349351 3.4:+87292737 None:intergenic
AACTATATGGAAATATTTGT+TGG 0.359142 3.4:+87290957 None:intergenic
TACCGTGTTCTTGATGATAA+TGG 0.369195 3.4:-87293690 MS.gene013304:CDS
CATGGTTGCACTTCAAACTA+TGG 0.372541 3.4:-87293522 MS.gene013304:CDS
GCATGTGCCGTAACATATTT+CGG 0.385578 3.4:-87292472 MS.gene013304:CDS
CTCGTTGGCGGGACGATACT+TGG 0.386748 3.4:+87291528 None:intergenic
TTATAGCCCATCCATTATTC+CGG 0.395618 3.4:+87292006 None:intergenic
GGCAGATGCCAGCCCATTAT+GGG 0.420042 3.4:-87292750 MS.gene013304:CDS
ATTCATGTAATTGTGCTTGT+TGG 0.423872 3.4:+87292726 None:intergenic
TCCTGTTCATGGAGATTGGA+TGG 0.425924 3.4:+87291023 None:intergenic
TCCATCCAATCTCCATGAAC+AGG 0.427742 3.4:-87291024 MS.gene013304:CDS
GTGCTTGTTGGACCCATAAT+GGG 0.428032 3.4:+87292738 None:intergenic
ATCTCCATGAACAGGAGAAA+TGG 0.428351 3.4:-87291016 MS.gene013304:CDS
ATCAATGGCCTGATCGTGAA+TGG 0.437790 3.4:+87293788 None:intergenic
ACTATATGGAAATATTTGTT+GGG 0.442669 3.4:+87290958 None:intergenic
TAGGAACAGTTTGAGACAAC+AGG 0.446713 3.4:-87291410 MS.gene013304:intron
AGCTGCATATTCCTTAAAGA+TGG 0.452958 3.4:-87292506 MS.gene013304:CDS
GTTGTGAAAGGACAGGCTTA+TGG 0.453904 3.4:-87291836 MS.gene013304:CDS
GTTAAAGCGGCGTGGGTGGT+GGG 0.454281 3.4:+87293830 None:intergenic
TACACTCTCAGCAACTTGAA+TGG 0.463732 3.4:+87291094 None:intergenic
TACCGCTGCAAAATTTAATC+CGG 0.464324 3.4:+87292055 None:intergenic
TCAATGGCCTGATCGTGAAT+GGG 0.464464 3.4:+87293789 None:intergenic
CTTCGAAACTGATCTGATGT+AGG 0.468212 3.4:+87291978 None:intergenic
TGTTCAAGCTGCTCGTCAAA+TGG 0.472797 3.4:-87291762 MS.gene013304:CDS
GGGAACAAGGAGTCTTGTTA+TGG 0.477452 3.4:-87292840 MS.gene013304:CDS
TCATAACCCCATTCACGATC+AGG 0.480021 3.4:-87293796 MS.gene013304:CDS
GATTTAGAAAGTGGATAGAA+AGG 0.484669 3.4:-87291468 MS.gene013304:CDS
TTCGAAACTGATCTGATGTA+GGG 0.489681 3.4:+87291979 None:intergenic
GGATTTGAAGTAAGTGAGAA+TGG 0.500348 3.4:+87293905 None:intergenic
CTGTAGTGAGATTTAGAAAG+TGG 0.501288 3.4:-87291477 MS.gene013304:CDS
ATCAGCTGCAGCTCTTTCCA+TGG 0.514662 3.4:-87293417 MS.gene013304:CDS
ACGCAAATTCCCCATGCTGT+TGG 0.515599 3.4:-87292529 MS.gene013304:CDS
AATAAGTTTGATAATGGGAA+AGG 0.516825 3.4:-87292775 MS.gene013304:CDS
TGGAGTTAAAGCGGCGTGGG+TGG 0.516948 3.4:+87293826 None:intergenic
CCACCATTCTATCTCGTTGG+CGG 0.520404 3.4:+87291516 None:intergenic
CACCATTCTATCTCGTTGGC+GGG 0.527457 3.4:+87291517 None:intergenic
CGGGAAAATAACATCGTCCA+TGG 0.528957 3.4:+87293400 None:intergenic
ATTTCCACCGGGGAAATCAA+TGG 0.533647 3.4:+87293773 None:intergenic
TATGAATTTGACATTTCCAC+CGG 0.533970 3.4:+87293761 None:intergenic
TTATATGCCGGAATAATGGA+TGG 0.534376 3.4:-87292013 MS.gene013304:CDS
CACTTTCTAAATCTCACTAC+AGG 0.536576 3.4:+87291478 None:intergenic
ACCATCTCCGAAATATGTTA+CGG 0.538718 3.4:+87292465 None:intergenic
TGGTGGAGTTAAAGCGGCGT+GGG 0.539258 3.4:+87293823 None:intergenic
TGTAGATGGGAATGATGCTC+TGG 0.540418 3.4:-87291798 MS.gene013304:CDS
ATATGCAGCTCCAACAGCAT+GGG 0.542436 3.4:+87292519 None:intergenic
AAAGCGGCGTGGGTGGTGGG+TGG 0.543898 3.4:+87293833 None:intergenic
GTCCCGCCAACGAGATAGAA+TGG 0.546054 3.4:-87291519 MS.gene013304:CDS
CGGTATTGTTGTGAAAGGAC+AGG 0.548213 3.4:-87291843 MS.gene013304:CDS
GAAGTAAGTGAGAATGGTTG+TGG 0.551715 3.4:+87293911 None:intergenic
AATATGCAGCTCCAACAGCA+TGG 0.552307 3.4:+87292518 None:intergenic
TCCGTAGCATTCGTGTAGAT+GGG 0.552757 3.4:-87291811 MS.gene013304:CDS
ACATGGCTGAGTCTGAGCTT+AGG 0.558677 3.4:-87291429 MS.gene013304:CDS
GGATAGAAAGGAATGGTTGG+TGG 0.559328 3.4:-87291456 MS.gene013304:CDS
TGACAGGGAGATTTCCATGC+CGG 0.562203 3.4:-87292074 MS.gene013304:intron
TTGTTGGACCCATAATGGGC+TGG 0.564271 3.4:+87292742 None:intergenic
CAGGCTCTTACATATAGAGT+AGG 0.566525 3.4:-87291577 MS.gene013304:CDS
AGTTTGATAATGGGAAAGGA+AGG 0.568039 3.4:-87292771 MS.gene013304:CDS
TATATGCCGGAATAATGGAT+GGG 0.568225 3.4:-87292012 MS.gene013304:CDS
GAAATTAGGTTTCCGACGAG+TGG 0.569374 3.4:+87293857 None:intergenic
CTGCAAAATTTAATCCGGCA+TGG 0.571659 3.4:+87292060 None:intergenic
GCCGTAACATATTTCGGAGA+TGG 0.577923 3.4:-87292466 MS.gene013304:CDS
GATCAGGCCATTGATTTCCC+CGG 0.583473 3.4:-87293780 MS.gene013304:CDS
CAAGGAGTCTTGTTATGGCG+TGG 0.584066 3.4:-87292835 MS.gene013304:CDS
ATATTTGTTGGGTAAACATG+TGG 0.592694 3.4:+87290969 None:intergenic
CTTGGTAGAGTCATCTGATG+TGG 0.593776 3.4:+87291546 None:intergenic
AGTGGATAGAAAGGAATGGT+TGG 0.596393 3.4:-87291459 MS.gene013304:CDS
CGGAGATGGTGGTTCAAGTG+AGG 0.598055 3.4:-87292452 MS.gene013304:intron
TGATGCTGTTTAGGTTAGCG+AGG 0.600776 3.4:-87293570 MS.gene013304:intron
TTCTATGAAGCACAAAGACA+AGG 0.602730 3.4:-87293491 MS.gene013304:CDS
AGAAAGTGGATAGAAAGGAA+TGG 0.604364 3.4:-87291463 MS.gene013304:CDS
TCTCCACCATTCTATCTCGT+TGG 0.604472 3.4:+87291513 None:intergenic
GTAACATATTTCGGAGATGG+TGG 0.604520 3.4:-87292463 MS.gene013304:CDS
TTGTTGGGTAAACATGTGGA+TGG 0.606418 3.4:+87290973 None:intergenic
TCACTAAACATGTCTGCAAG+TGG 0.606720 3.4:+87291062 None:intergenic
TCTTCTCATCTTCCACTCGT+CGG 0.607029 3.4:-87293869 MS.gene013304:CDS
TCATCAAGAACACGGTAACA+AGG 0.609922 3.4:+87293696 None:intergenic
TCCCATCTACACGAATGCTA+CGG 0.620589 3.4:+87291810 None:intergenic
CACCATTATCATCAAGAACA+CGG 0.621664 3.4:+87293688 None:intergenic
TGAACAGGAGAAATGGCTGA+AGG 0.622098 3.4:-87291009 MS.gene013304:CDS
CAATGGCCTGATCGTGAATG+GGG 0.622105 3.4:+87293790 None:intergenic
GGTGACGGTATTGTTGTGAA+AGG 0.624075 3.4:-87291848 MS.gene013304:CDS
GAGCAGTGGTGGAGTTAAAG+CGG 0.626711 3.4:+87293817 None:intergenic
GTGGTGGAGTTAAAGCGGCG+TGG 0.638211 3.4:+87293822 None:intergenic
CAGGCCATTGATTTCCCCGG+TGG 0.638723 3.4:-87293777 MS.gene013304:CDS
ATGAATTTGACATTTCCACC+GGG 0.645088 3.4:+87293762 None:intergenic
CTAAACATGTCTGCAAGTGG+AGG 0.645266 3.4:+87291065 None:intergenic
GTGAATGGGGTTATGAGCAG+TGG 0.646216 3.4:+87293803 None:intergenic
TATGCAGCTCCAACAGCATG+GGG 0.649008 3.4:+87292520 None:intergenic
AATGGGGTTATGAGCAGTGG+TGG 0.649419 3.4:+87293806 None:intergenic
TGTGTGCAGTATAGGGAACA+AGG 0.650480 3.4:-87292853 MS.gene013304:intron
TGTTAAAATGTACAATGACA+TGG 0.664765 3.4:-87293540 MS.gene013304:CDS
TAGAGTCATCTGATGTGGAG+TGG 0.674103 3.4:+87291551 None:intergenic
GAATGGTTGGTGGAATGACA+TGG 0.675261 3.4:-87291446 MS.gene013304:CDS
TCGAAACTGATCTGATGTAG+GGG 0.680340 3.4:+87291980 None:intergenic
TGTTCATGGAGATTGGATGG+AGG 0.693865 3.4:+87291026 None:intergenic
CCGCCAACGAGATAGAATGG+TGG 0.712027 3.4:-87291516 MS.gene013304:CDS
TGAATTTGACATTTCCACCG+GGG 0.758614 3.4:+87293763 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATTCATACTTTCAT+TGG - chr3.4:87291928-87291947 MS.gene013304:intron 15.0%
!! AAAAAATTCATACTTTCATT+GGG - chr3.4:87291929-87291948 MS.gene013304:intron 15.0%
!! AAGAAAATAATTGAAATAGA+AGG + chr3.4:87292944-87292963 None:intergenic 15.0%
!!! AATATTTAACAATGCTTTTA+TGG + chr3.4:87293732-87293751 None:intergenic 15.0%
!!! AATTTTCTTGAATTTGATTT+AGG - chr3.4:87293701-87293720 MS.gene013304:CDS 15.0%
!!! ATTACTACTATTATTTTTGT+TGG - chr3.4:87292256-87292275 MS.gene013304:intron 15.0%
!!! TAAACTTTAATATCGTTTTT+TGG - chr3.4:87292605-87292624 MS.gene013304:intron 15.0%
!!! TTTCAAATAAGTTTGATAAT+GGG - chr3.4:87292103-87292122 MS.gene013304:intron 15.0%
!!! TTTTCAAATAAGTTTGATAA+TGG - chr3.4:87292102-87292121 MS.gene013304:intron 15.0%
!!! TTTTGCTACAAAATATTTTA+AGG + chr3.4:87293660-87293679 None:intergenic 15.0%
!! AAAAAAATCTTAACATATCG+AGG + chr3.4:87292748-87292767 None:intergenic 20.0%
!! ACTTTCAATTTCAAAATTGT+TGG + chr3.4:87292302-87292321 None:intergenic 20.0%
!! CTTTCAATTTCAAAATTGTT+GGG + chr3.4:87292301-87292320 None:intergenic 20.0%
!! TCAGATAAAAAATTCATTTG+AGG + chr3.4:87291148-87291167 None:intergenic 20.0%
!!! AATATATTTGAAACAGAACT+AGG + chr3.4:87293547-87293566 None:intergenic 20.0%
!!! ATATATTTGAAACAGAACTA+GGG + chr3.4:87293546-87293565 None:intergenic 20.0%
!!! ATTTTGTAGCAAAAAATTTG+CGG - chr3.4:87293666-87293685 MS.gene013304:CDS 20.0%
!!! CATTTTACTTCTATTAGAAT+TGG + chr3.4:87293164-87293183 None:intergenic 20.0%
!!! TCATTTTATGTAACTACAAA+TGG - chr3.4:87291422-87291441 MS.gene013304:CDS 20.0%
!!! TTAAAATTTTGAAGGAGTTT+AGG - chr3.4:87292552-87292571 MS.gene013304:intron 20.0%
!!! TTAATATCGTTTTTTGGTTT+AGG - chr3.4:87292611-87292630 MS.gene013304:intron 20.0%
!!! TTTTGCTCTTAAAATTTTGA+AGG - chr3.4:87292544-87292563 MS.gene013304:intron 20.0%
! ACAGAAATTTCCATTCAATA+AGG + chr3.4:87292496-87292515 None:intergenic 25.0%
! AGAAATTTCCATTCAATAAG+GGG + chr3.4:87292494-87292513 None:intergenic 25.0%
! ATTTCTCATATTGTAATGCA+AGG + chr3.4:87291892-87291911 None:intergenic 25.0%
! CAGAAATTTCCATTCAATAA+GGG + chr3.4:87292495-87292514 None:intergenic 25.0%
! CTATCACACACTTATTTAAT+GGG + chr3.4:87292687-87292706 None:intergenic 25.0%
! TCAACAGCAAATTATTATCA+AGG - chr3.4:87292720-87292739 MS.gene013304:CDS 25.0%
! TCAGTTTCGAAGTAATTTAT+CGG - chr3.4:87292916-87292935 MS.gene013304:intron 25.0%
! TCTATCACACACTTATTTAA+TGG + chr3.4:87292688-87292707 None:intergenic 25.0%
! TGTTAAAATGTACAATGACA+TGG - chr3.4:87291343-87291362 MS.gene013304:intron 25.0%
! TGTTAAATTTCACTACATTG+AGG + chr3.4:87291841-87291860 None:intergenic 25.0%
!! AGTTGCATAGAATTTTTGTT+AGG - chr3.4:87292636-87292655 MS.gene013304:intron 25.0%
!! ATCAACCAAATGATTTTTCA+GGG + chr3.4:87293515-87293534 None:intergenic 25.0%
!! ATTTTTATATGCCGGAATAA+TGG - chr3.4:87292866-87292885 MS.gene013304:intron 25.0%
!! GGACATGTTTAAAACAAAAA+TGG - chr3.4:87293207-87293226 MS.gene013304:intron 25.0%
!! TATCAACCAAATGATTTTTC+AGG + chr3.4:87293516-87293535 None:intergenic 25.0%
!!! AATAAGTTTGATAATGGGAA+AGG - chr3.4:87292108-87292127 MS.gene013304:intron 25.0%
!!! ATATAATTTTGATCAACCTG+CGG + chr3.4:87291506-87291525 None:intergenic 25.0%
ACACACTTATTTAATGGGAT+GGG + chr3.4:87292682-87292701 None:intergenic 30.0%
AGAAGAAACAGATACAACAT+TGG + chr3.4:87293279-87293298 None:intergenic 30.0%
ATATAGTGTTGTCAAATAGC+AGG - chr3.4:87291808-87291827 MS.gene013304:CDS 30.0%
ATCTTCTGTAAGATCATTTC+TGG + chr3.4:87292001-87292020 None:intergenic 30.0%
ATTCATGTAATTGTGCTTGT+TGG + chr3.4:87292160-87292179 None:intergenic 30.0%
CGATAGCAAAAGATAAAACA+AGG - chr3.4:87291542-87291561 MS.gene013304:CDS 30.0%
CTCATATTGAAGCATGTTAA+CGG - chr3.4:87293249-87293268 MS.gene013304:intron 30.0%
GATGAATGAAATGAAAGTGA+AGG + chr3.4:87291269-87291288 None:intergenic 30.0%
GATTTAGAAAGTGGATAGAA+AGG - chr3.4:87293415-87293434 MS.gene013304:CDS 30.0%
TATACTAATGCAATTGACAC+AGG - chr3.4:87293603-87293622 MS.gene013304:intron 30.0%
TATCTAACGATATATTGTGC+TGG - chr3.4:87292994-87293013 MS.gene013304:intron 30.0%
TATGAATTTGACATTTCCAC+CGG + chr3.4:87291125-87291144 None:intergenic 30.0%
TCAAACAAGTCAATACAAAC+AGG - chr3.4:87291711-87291730 MS.gene013304:intron 30.0%
TCCGGCATATAAAAATAACT+GGG + chr3.4:87292862-87292881 None:intergenic 30.0%
TGTACAATGTTGTCAAATAG+TGG - chr3.4:87291738-87291757 MS.gene013304:CDS 30.0%
TGTGTCAATTGCATTAGTAT+AGG + chr3.4:87293604-87293623 None:intergenic 30.0%
TTCCGGCATATAAAAATAAC+TGG + chr3.4:87292863-87292882 None:intergenic 30.0%
TTCCTTAAAGATGGACAAAA+AGG - chr3.4:87292386-87292405 MS.gene013304:intron 30.0%
! ATAATGGTGAACCAATTTTC+GGG - chr3.4:87291209-87291228 MS.gene013304:intron 30.0%
! ATATTTGTTGGGTAAACATG+TGG + chr3.4:87293917-87293936 None:intergenic 30.0%
! ATCCTTTTTGTCCATCTTTA+AGG + chr3.4:87292391-87292410 None:intergenic 30.0%
! ATTAAATTTTGCAGCGGTAA+TGG - chr3.4:87292832-87292851 MS.gene013304:CDS 30.0%
! CTACTTACATAAATTTTGCG+AGG + chr3.4:87291685-87291704 None:intergenic 30.0%
! CTTAGAAATTGATGCTGTTT+AGG - chr3.4:87291304-87291323 MS.gene013304:intron 30.0%
! CTTTTCCCTGAAAAATCATT+TGG - chr3.4:87293507-87293526 MS.gene013304:CDS 30.0%
! TATTGATTGTGTGCAGTATA+GGG - chr3.4:87292023-87292042 MS.gene013304:CDS 30.0%
! TTATTGATTGTGTGCAGTAT+AGG - chr3.4:87292022-87292041 MS.gene013304:CDS 30.0%
!! AACCTTTGAAGTCAAATCTT+TGG - chr3.4:87293186-87293205 MS.gene013304:intron 30.0%
!! GATAATGGTGAACCAATTTT+CGG - chr3.4:87291208-87291227 MS.gene013304:intron 30.0%
!! TATAATTTTGATCAACCTGC+GGG + chr3.4:87291505-87291524 None:intergenic 30.0%
!! TGTGCTATTTAAACATGTCA+TGG - chr3.4:87292513-87292532 MS.gene013304:CDS 30.0%
AAACAAAAATGGCAGTATGC+TGG - chr3.4:87293218-87293237 MS.gene013304:intron 35.0%
AATGCAATTGACACAGGTAT+GGG - chr3.4:87293609-87293628 MS.gene013304:intron 35.0%
ACAAAATCAGTCCCGAAAAT+TGG + chr3.4:87291223-87291242 None:intergenic 35.0%
ACCATCTCCGAAATATGTTA+CGG + chr3.4:87292421-87292440 None:intergenic 35.0%
AGAAAGTGGATAGAAAGGAA+TGG - chr3.4:87293420-87293439 MS.gene013304:CDS 35.0%
AGCTGCATATTCCTTAAAGA+TGG - chr3.4:87292377-87292396 MS.gene013304:intron 35.0%
AGCTTGAACAGCACTATAAA+TGG + chr3.4:87293111-87293130 None:intergenic 35.0%
AGGTTATACTGTATCACTCT+CGG - chr3.4:87292572-87292591 MS.gene013304:intron 35.0%
ATGAATTTGACATTTCCACC+GGG + chr3.4:87291124-87291143 None:intergenic 35.0%
ATTGAGTTATGAGCTATGAC+AGG - chr3.4:87292793-87292812 MS.gene013304:CDS 35.0%
CACACACTTATTTAATGGGA+TGG + chr3.4:87292683-87292702 None:intergenic 35.0%
CACCATTATCATCAAGAACA+CGG + chr3.4:87291198-87291217 None:intergenic 35.0%
CACTTTCTAAATCTCACTAC+AGG + chr3.4:87293408-87293427 None:intergenic 35.0%
CCGGCATATAAAAATAACTG+GGG + chr3.4:87292861-87292880 None:intergenic 35.0%
CTGTAGTGAGATTTAGAAAG+TGG - chr3.4:87293406-87293425 MS.gene013304:CDS 35.0%
GAATGAAATGAAAGTGAAGG+TGG + chr3.4:87291266-87291285 None:intergenic 35.0%
TAATGCAAGGTTGTCAATTG+TGG + chr3.4:87291879-87291898 None:intergenic 35.0%
TAATGCAATTGACACAGGTA+TGG - chr3.4:87293608-87293627 MS.gene013304:intron 35.0%
TACCGCTGCAAAATTTAATC+CGG + chr3.4:87292831-87292850 None:intergenic 35.0%
TCCTGTTTATACATAGGTGA+CGG - chr3.4:87293020-87293039 MS.gene013304:intron 35.0%
TGAGAAGAAGTTGTTGAAGT+TGG + chr3.4:87291002-87291021 None:intergenic 35.0%
TGGTGTTCCTGTTTATACAT+AGG - chr3.4:87293014-87293033 MS.gene013304:intron 35.0%
TTATAGCCCATCCATTATTC+CGG + chr3.4:87292880-87292899 None:intergenic 35.0%
TTCGAAACTGATCTGATGTA+GGG + chr3.4:87292907-87292926 None:intergenic 35.0%
TTCTATGAAGCACAAAGACA+AGG - chr3.4:87291392-87291411 MS.gene013304:intron 35.0%
TTGAGTTATGAGCTATGACA+GGG - chr3.4:87292794-87292813 MS.gene013304:CDS 35.0%
! GGATTTGAAGTAAGTGAGAA+TGG + chr3.4:87290981-87291000 None:intergenic 35.0%
! GTCCAAAGATTTGACTTCAA+AGG + chr3.4:87293191-87293210 None:intergenic 35.0%
! TAAATTTTGCGAGGCTGTTT+AGG + chr3.4:87291676-87291695 None:intergenic 35.0%
! TACCGTGTTCTTGATGATAA+TGG - chr3.4:87291193-87291212 MS.gene013304:intron 35.0%
! TTATATGCCGGAATAATGGA+TGG - chr3.4:87292870-87292889 MS.gene013304:intron 35.0%
!! AGTTTGATAATGGGAAAGGA+AGG - chr3.4:87292112-87292131 MS.gene013304:intron 35.0%
!! TATATGCCGGAATAATGGAT+GGG - chr3.4:87292871-87292890 MS.gene013304:intron 35.0%
!!! CCCCAGTTATTTTTATATGC+CGG - chr3.4:87292858-87292877 MS.gene013304:intron 35.0%
!!! TCTGTTTCTTCTGTTTTTGC+AGG - chr3.4:87293287-87293306 MS.gene013304:intron 35.0%
ACCGTCACCTATGTATAAAC+AGG + chr3.4:87293024-87293043 None:intergenic 40.0%
AGTGGATAGAAAGGAATGGT+TGG - chr3.4:87293424-87293443 MS.gene013304:CDS 40.0%
ATCTCCATGAACAGGAGAAA+TGG - chr3.4:87293867-87293886 MS.gene013304:CDS 40.0%
ATGCAATTGACACAGGTATG+GGG - chr3.4:87293610-87293629 MS.gene013304:intron 40.0%
CAGCGACGATTACAAATTCA+TGG + chr3.4:87293570-87293589 None:intergenic 40.0%
CAGGCTCTTACATATAGAGT+AGG - chr3.4:87293306-87293325 MS.gene013304:intron 40.0%
CATGGTTGCACTTCAAACTA+TGG - chr3.4:87291361-87291380 MS.gene013304:intron 40.0%
CTGCAAAATTTAATCCGGCA+TGG + chr3.4:87292826-87292845 None:intergenic 40.0%
CTTCGAAACTGATCTGATGT+AGG + chr3.4:87292908-87292927 None:intergenic 40.0%
GAAGTAAGTGAGAATGGTTG+TGG + chr3.4:87290975-87290994 None:intergenic 40.0%
GCATGTGCCGTAACATATTT+CGG - chr3.4:87292411-87292430 MS.gene013304:intron 40.0%
GTAACATATTTCGGAGATGG+TGG - chr3.4:87292420-87292439 MS.gene013304:intron 40.0%
TACACTCTCAGCAACTTGAA+TGG + chr3.4:87293792-87293811 None:intergenic 40.0%
TCACTAAACATGTCTGCAAG+TGG + chr3.4:87293824-87293843 None:intergenic 40.0%
TCATCAAGAACACGGTAACA+AGG + chr3.4:87291190-87291209 None:intergenic 40.0%
TCGAAACTGATCTGATGTAG+GGG + chr3.4:87292906-87292925 None:intergenic 40.0%
TGAATTTGACATTTCCACCG+GGG + chr3.4:87291123-87291142 None:intergenic 40.0%
TTGTTGGGTAAACATGTGGA+TGG + chr3.4:87293913-87293932 None:intergenic 40.0%
TTTCTCCTGTTCATGGAGAT+TGG + chr3.4:87293867-87293886 None:intergenic 40.0%
! GTATGGGGTATCTGATTACT+TGG - chr3.4:87293625-87293644 MS.gene013304:intron 40.0%
! TAGGAACAGTTTGAGACAAC+AGG - chr3.4:87293473-87293492 MS.gene013304:CDS 40.0%
! TGCCGGATTAAATTTTGCAG+CGG - chr3.4:87292826-87292845 MS.gene013304:CDS 40.0%
!! AAATTTTGCAGCGGTAATGG+AGG - chr3.4:87292835-87292854 MS.gene013304:CDS 40.0%
!! TTTCGGGACTGATTTTGTTC+AGG - chr3.4:87291225-87291244 MS.gene013304:intron 40.0%
AATATGCAGCTCCAACAGCA+TGG + chr3.4:87292368-87292387 None:intergenic 45.0%
ATATGCAGCTCCAACAGCAT+GGG + chr3.4:87292367-87292386 None:intergenic 45.0%
ATCAATGGCCTGATCGTGAA+TGG + chr3.4:87291098-87291117 None:intergenic 45.0%
ATTTCCACCGGGGAAATCAA+TGG + chr3.4:87291113-87291132 None:intergenic 45.0%
CGGGAAAATAACATCGTCCA+TGG + chr3.4:87291486-87291505 None:intergenic 45.0%
CGGTATTGTTGTGAAAGGAC+AGG - chr3.4:87293040-87293059 MS.gene013304:intron 45.0%
CTAAACATGTCTGCAAGTGG+AGG + chr3.4:87293821-87293840 None:intergenic 45.0%
CTTGGTAGAGTCATCTGATG+TGG + chr3.4:87293340-87293359 None:intergenic 45.0%
GAAATTAGGTTTCCGACGAG+TGG + chr3.4:87291029-87291048 None:intergenic 45.0%
GCCGTAACATATTTCGGAGA+TGG - chr3.4:87292417-87292436 MS.gene013304:intron 45.0%
GGATAGAAAGGAATGGTTGG+TGG - chr3.4:87293427-87293446 MS.gene013304:CDS 45.0%
GTTGTGAAAGGACAGGCTTA+TGG - chr3.4:87293047-87293066 MS.gene013304:intron 45.0%
TAGAGTCATCTGATGTGGAG+TGG + chr3.4:87293335-87293354 None:intergenic 45.0%
TCAATGGCCTGATCGTGAAT+GGG + chr3.4:87291097-87291116 None:intergenic 45.0%
TCAGCCATTTCTCCTGTTCA+TGG + chr3.4:87293874-87293893 None:intergenic 45.0%
TCATAACCCCATTCACGATC+AGG - chr3.4:87291087-87291106 MS.gene013304:CDS 45.0%
TCCATCCAATCTCCATGAAC+AGG - chr3.4:87293859-87293878 MS.gene013304:CDS 45.0%
TCCCATCTACACGAATGCTA+CGG + chr3.4:87293076-87293095 None:intergenic 45.0%
TCCGTAGCATTCGTGTAGAT+GGG - chr3.4:87293072-87293091 MS.gene013304:intron 45.0%
TCCTGTTCATGGAGATTGGA+TGG + chr3.4:87293863-87293882 None:intergenic 45.0%
TCGCTTCTCCCCTTATTGAA+TGG - chr3.4:87292483-87292502 MS.gene013304:CDS 45.0%
TCTCCACCATTCTATCTCGT+TGG + chr3.4:87293373-87293392 None:intergenic 45.0%
TCTTCTCATCTTCCACTCGT+CGG - chr3.4:87291014-87291033 MS.gene013304:CDS 45.0%
TGAACAGGAGAAATGGCTGA+AGG - chr3.4:87293874-87293893 MS.gene013304:CDS 45.0%
TGGTCTGTAGAAGCTGTAAC+AGG + chr3.4:87293772-87293791 None:intergenic 45.0%
TGTAGATGGGAATGATGCTC+TGG - chr3.4:87293085-87293104 MS.gene013304:intron 45.0%
TGTGTGCAGTATAGGGAACA+AGG - chr3.4:87292030-87292049 MS.gene013304:CDS 45.0%
TGTTCAAGCTGCTCGTCAAA+TGG - chr3.4:87293121-87293140 MS.gene013304:intron 45.0%
TGTTCATGGAGATTGGATGG+AGG + chr3.4:87293860-87293879 None:intergenic 45.0%
! GGTGACGGTATTGTTGTGAA+AGG - chr3.4:87293035-87293054 MS.gene013304:intron 45.0%
! GTGCTTGTTGGACCCATAAT+GGG + chr3.4:87292148-87292167 None:intergenic 45.0%
! TGATGCTGTTTAGGTTAGCG+AGG - chr3.4:87291313-87291332 MS.gene013304:intron 45.0%
! TGTGCTTGTTGGACCCATAA+TGG + chr3.4:87292149-87292168 None:intergenic 45.0%
!! GAATGGTTGGTGGAATGACA+TGG - chr3.4:87293437-87293456 MS.gene013304:CDS 45.0%
!! GAGAAGCGAGTCTGCTTTTA+TGG + chr3.4:87292472-87292491 None:intergenic 45.0%
!! GGGAACAAGGAGTCTTGTTA+TGG - chr3.4:87292043-87292062 MS.gene013304:CDS 45.0%
AATGGGGTTATGAGCAGTGG+TGG + chr3.4:87291080-87291099 None:intergenic 50.0%
ACATGGCTGAGTCTGAGCTT+AGG - chr3.4:87293454-87293473 MS.gene013304:CDS 50.0%
ACGCAAATTCCCCATGCTGT+TGG - chr3.4:87292354-87292373 MS.gene013304:intron 50.0%
ATCAGCTGCAGCTCTTTCCA+TGG - chr3.4:87291466-87291485 MS.gene013304:CDS 50.0%
CAATGGCCTGATCGTGAATG+GGG + chr3.4:87291096-87291115 None:intergenic 50.0%
CACCATTCTATCTCGTTGGC+GGG + chr3.4:87293369-87293388 None:intergenic 50.0%
CCACCATTCTATCTCGTTGG+CGG + chr3.4:87293370-87293389 None:intergenic 50.0%
GTCCGTAGCATTCGTGTAGA+TGG - chr3.4:87293071-87293090 MS.gene013304:intron 50.0%
GTGAATGGGGTTATGAGCAG+TGG + chr3.4:87291083-87291102 None:intergenic 50.0%
TATGCAGCTCCAACAGCATG+GGG + chr3.4:87292366-87292385 None:intergenic 50.0%
TGACAGGGAGATTTCCATGC+CGG - chr3.4:87292809-87292828 MS.gene013304:CDS 50.0%
! GAGCAGTGGTGGAGTTAAAG+CGG + chr3.4:87291069-87291088 None:intergenic 50.0%
!! CAAGGAGTCTTGTTATGGCG+TGG - chr3.4:87292048-87292067 MS.gene013304:CDS 50.0%
!! GATCAGGCCATTGATTTCCC+CGG - chr3.4:87291103-87291122 MS.gene013304:CDS 50.0%
!! TTGTTGGACCCATAATGGGC+TGG + chr3.4:87292144-87292163 None:intergenic 50.0%
!!! GGACGATGTTATTTTCCCGC+AGG - chr3.4:87291487-87291506 MS.gene013304:CDS 50.0%
AGGCAGATGCCAGCCCATTA+TGG - chr3.4:87292132-87292151 MS.gene013304:intron 55.0%
CCGCCAACGAGATAGAATGG+TGG - chr3.4:87293367-87293386 MS.gene013304:intron 55.0%
GGCAGATGCCAGCCCATTAT+GGG - chr3.4:87292133-87292152 MS.gene013304:intron 55.0%
GTCCCGCCAACGAGATAGAA+TGG - chr3.4:87293364-87293383 MS.gene013304:intron 55.0%
TGGTGGAGTTAAAGCGGCGT+GGG + chr3.4:87291063-87291082 None:intergenic 55.0%
! CGGAGATGGTGGTTCAAGTG+AGG - chr3.4:87292431-87292450 MS.gene013304:intron 55.0%
!! GGGTGGTGGGTGGTGAAATT+AGG + chr3.4:87291043-87291062 None:intergenic 55.0%
AGTTAAAGCGGCGTGGGTGG+TGG + chr3.4:87291057-87291076 None:intergenic 60.0%
CTCGTTGGCGGGACGATACT+TGG + chr3.4:87293358-87293377 None:intergenic 60.0%
GTTAAAGCGGCGTGGGTGGT+GGG + chr3.4:87291056-87291075 None:intergenic 60.0%
TGGAGTTAAAGCGGCGTGGG+TGG + chr3.4:87291060-87291079 None:intergenic 60.0%
! GTGGTGGAGTTAAAGCGGCG+TGG + chr3.4:87291064-87291083 None:intergenic 60.0%
!! CAGGCCATTGATTTCCCCGG+TGG - chr3.4:87291106-87291125 MS.gene013304:CDS 60.0%
!! AAAGCGGCGTGGGTGGTGGG+TGG + chr3.4:87291053-87291072 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 87290959 87293946 87290959 ID=MS.gene013304
chr3.4 mRNA 87290959 87293946 87290959 ID=MS.gene013304.t1;Parent=MS.gene013304
chr3.4 exon 87293659 87293946 87293659 ID=MS.gene013304.t1.exon1;Parent=MS.gene013304.t1
chr3.4 CDS 87293659 87293946 87293659 ID=cds.MS.gene013304.t1;Parent=MS.gene013304.t1
chr3.4 exon 87293397 87293579 87293397 ID=MS.gene013304.t1.exon2;Parent=MS.gene013304.t1
chr3.4 CDS 87293397 87293579 87293397 ID=cds.MS.gene013304.t1;Parent=MS.gene013304.t1
chr3.4 exon 87292709 87292866 87292709 ID=MS.gene013304.t1.exon3;Parent=MS.gene013304.t1
chr3.4 CDS 87292709 87292866 87292709 ID=cds.MS.gene013304.t1;Parent=MS.gene013304.t1
chr3.4 exon 87292453 87292552 87292453 ID=MS.gene013304.t1.exon4;Parent=MS.gene013304.t1
chr3.4 CDS 87292453 87292552 87292453 ID=cds.MS.gene013304.t1;Parent=MS.gene013304.t1
chr3.4 exon 87291979 87292090 87291979 ID=MS.gene013304.t1.exon5;Parent=MS.gene013304.t1
chr3.4 CDS 87291979 87292090 87291979 ID=cds.MS.gene013304.t1;Parent=MS.gene013304.t1
chr3.4 exon 87291730 87291869 87291730 ID=MS.gene013304.t1.exon6;Parent=MS.gene013304.t1
chr3.4 CDS 87291730 87291869 87291730 ID=cds.MS.gene013304.t1;Parent=MS.gene013304.t1
chr3.4 exon 87291411 87291596 87291411 ID=MS.gene013304.t1.exon7;Parent=MS.gene013304.t1
chr3.4 CDS 87291411 87291596 87291411 ID=cds.MS.gene013304.t1;Parent=MS.gene013304.t1
chr3.4 exon 87290959 87291126 87290959 ID=MS.gene013304.t1.exon8;Parent=MS.gene013304.t1
chr3.4 CDS 87290959 87291126 87290959 ID=cds.MS.gene013304.t1;Parent=MS.gene013304.t1
Gene Sequence

>MS.gene013304

ATGATGAGAAAATCCACAACCATTCTCACTTACTTCAAATCCAACTTCAACAACTTCTTCTCATCTTCCACTCGTCGGAAACCTAATTTCACCACCCACCACCCACGCCGCTTTAACTCCACCACTGCTCATAACCCCATTCACGATCAGGCCATTGATTTCCCCGGTGGAAATGTCAAATTCATACCTCAAATGAATTTTTTATCTGAATCACAACAACACAGAGTTCCTTGTTACCGTGTTCTTGATGATAATGGTGAACCAATTTTCGGGACTGATTTTGTTCAGGTTTGCACTTACTTCACCACCTTCACTTTCATTTCATTCATCTGTGAAAATTAGTATCTTAGAAATTGATGCTGTTTAGGTTAGCGAGGATGTTGCTGTTAAAATGTACAATGACATGGTTGCACTTCAAACTATGGACACTATCTTCTATGAAGCACAAAGACAAGGAAGAATCTCATTTTATGTAACTACAAATGGAGAAGAAGCTATCAACATTGCATCAGCTGCAGCTCTTTCCATGGACGATGTTATTTTCCCGCAGGTTGATCAAAATTATATTTTGTATAAGCTATTTCGATAGCAAAAGATAAAACAAGGTTAAATTGTTTTTGTATAAGCTATAAGTTGTTTTCATAAGATATCTTAGAGAATTTATGAAAATAAGCTAAAACAGTTTATGATTCATAAGTTGTTTTTATAAGTTCTCCTAAACAGCCTCGCAAAATTTATGTAAGTAGATAAGCTCAAACAAGTCAATACAAACAGGTGTATGTACAATGTTGTCAAATAGTGGCTATAACACTACAATGTAGCTGAATTTTAACAATATGCTTAGTATGTATATAGTGTTGTCAAATAGCAGGCATATCACCTCAATGTAGTGAAATTTAACAGTTATTTTCAGCAATCCACAATTGACAACCTTGCATTACAATATGAGAAATGCAACAGAAATCTATGAAAAAAATTCATACTTTCATTGGGATTTTTTTTTTTTAATTTGTCTAAATTTTGCTAAAAAGTTAGCTAACCAGAAATGATCTTACAGAAGATATTATTGATTGTGTGCAGTATAGGGAACAAGGAGTCTTGTTATGGCGTGGCTTCACTCTGCAAGAATTCGCAAATCAGTGTTTTTCAAATAAGTTTGATAATGGGAAAGGAAGGCAGATGCCAGCCCATTATGGGTCCAACAAGCACAATTACATGAATGTAGCTTCAACTGTTGCGTAAGTATTGAAAAAGTTTGATGTACAAGACTTTGATGTATGATATTGATAATATTGTTATTACTACTATTATTTTTGTTGGTGTCGCTGCTGCTGTTTTTCCCAACAATTTTGAAATTGAAAGTTACAAAATGCAAAATCTACTTTGATCTGTAGTACGCAAATTCCCCATGCTGTTGGAGCTGCATATTCCTTAAAGATGGACAAAAAGGATGCATGTGCCGTAACATATTTCGGAGATGGTGGTTCAAGTGAGGTAAATTTTACAATTTCCATAAAAGCAGACTCGCTTCTCCCCTTATTGAATGGAAATTTCTGTGCTATTTAAACATGTCATGGATTGAGAGTTTTGCTCTTAAAATTTTGAAGGAGTTTAGGTTATACTGTATCACTCTCGGCTAAAACTTTTAAACTTTAATATCGTTTTTTGGTTTAGGAGAGTTGCATAGAATTTTTGTTAGGAAAAAAAAATATGCAGTTATCCCATCCCATTAAATAAGTGTGTGATAGAATGCTTTTGTTTTCAACAGCAAATTATTATCAAGGATCCTCGATATGTTAAGATTTTTTTTCTTTTGCTTTTTATATTGTAATAGATTGAGTTATGAGCTATGACAGGGAGATTTCCATGCCGGATTAAATTTTGCAGCGGTAATGGAGGCCCCAGTTATTTTTATATGCCGGAATAATGGATGGGCTATAAGTACCCCTACATCAGATCAGTTTCGAAGTAATTTATCGGTTCCTTCTATTTCAATTATTTTCTTACTGTCTACATCTTTAGCATTGTCTTGCAATATCTAACGATATATTGTGCTGGTGTTCCTGTTTATACATAGGTGACGGTATTGTTGTGAAAGGACAGGCTTATGGAGTCCGTAGCATTCGTGTAGATGGGAATGATGCTCTGGCCATTTATAGTGCTGTTCAAGCTGCTCGTCAAATGGCAGTTAGCGAAGAGAGACCAATTCTAATAGAAGTAAAATGATAACCTTTGAAGTCAAATCTTTGGACATGTTTAAAACAAAAATGGCAGTATGCTGGTATACAGTCTCATATTGAAGCATGTTAACGGCAGACCAATGTTGTATCTGTTTCTTCTGTTTTTGCAGGCTCTTACATATAGAGTAGGACACCACTCCACATCAGATGACTCTACCAAGTATCGTCCCGCCAACGAGATAGAATGGTGGAGATTGTCACGTGATCCTGTAGTGAGATTTAGAAAGTGGATAGAAAGGAATGGTTGGTGGAATGACATGGCTGAGTCTGAGCTTAGGAACAGTTTGAGACAACAGGTAACTAACTATCTTTTCCCTGAAAAATCATTTGGTTGATACTAGATACCCTAGTTCTGTTTCAAATATATTCCATGAATTTGTAATCGTCGCTGAAAGTGTTCTTCCTATACTAATGCAATTGACACAGGTATGGGGTATCTGATTACTTGGTATACTACACCTTAAAATATTTTGTAGCAAAAAATTTGCGGTTTTATAATCATAATTTTCTTGAATTTGATTTAGGATGATCCATAAAAGCATTGTTAAATATTTATTCTAACTCAAATTTCCTGTTACAGCTTCTACAGACCATTCAAGTTGCTGAGAGTGTAGAAAAACCTCCACTTGCAGACATGTTTAGTGATGTATATGATGTTCCTCCATCCAATCTCCATGAACAGGAGAAATGGCTGAAGGAGACAGTCAAAAACCATCCACATGTTTACCCAACAAATATTTCCATATAG

Protein sequence

>MS.gene013304.t1

MMRKSTTILTYFKSNFNNFFSSSTRRKPNFTTHHPRRFNSTTAHNPIHDQAIDFPGGNVKFIPQMNFLSESQQHRVPCYRVLDDNGEPIFGTDFVQVSEDVAVKMYNDMVALQTMDTIFYEAQRQGRISFYVTTNGEEAINIASAAALSMDDVIFPQYREQGVLLWRGFTLQEFANQCFSNKFDNGKGRQMPAHYGSNKHNYMNVASTVATQIPHAVGAAYSLKMDKKDACAVTYFGDGGSSEGDFHAGLNFAAVMEAPVIFICRNNGWAISTPTSDQFRSDGIVVKGQAYGVRSIRVDGNDALAIYSAVQAARQMAVSEERPILIEALTYRVGHHSTSDDSTKYRPANEIEWWRLSRDPVVRFRKWIERNGWWNDMAESELRNSLRQQLLQTIQVAESVEKPPLADMFSDVYDVPPSNLHEQEKWLKETVKNHPHVYPTNISI