Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25358.t1 | XP_024626574.1 | 72.1 | 298 | 43 | 2 | 5 | 301 | 2 | 260 | 2.00E-82 | 316.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25358.t1 | Q9SZL8 | 32.8 | 198 | 129 | 4 | 160 | 355 | 77 | 272 | 1.2e-17 | 92.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25358.t1 | A0A072TZ24 | 76.9 | 208 | 30 | 1 | 134 | 341 | 66 | 255 | 3.3e-82 | 315.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene25358.t1 | TF | FAR1 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052447 | MS.gene25358 | 0.855114 | 7.84E-62 | -1.69E-46 |
MS.gene05329 | MS.gene25358 | 0.822739 | 2.02E-53 | -1.69E-46 |
MS.gene054124 | MS.gene25358 | 0.800026 | 1.75E-48 | -1.69E-46 |
MS.gene055952 | MS.gene25358 | 0.802199 | 6.28E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25358.t1 | MTR_7g028855 | 70.990 | 293 | 50 | 3 | 8 | 299 | 5 | 263 | 1.63e-134 | 397 |
MS.gene25358.t1 | MTR_7g446520 | 69.123 | 285 | 45 | 3 | 58 | 342 | 15 | 256 | 7.81e-129 | 378 |
MS.gene25358.t1 | MTR_7g446480 | 52.959 | 338 | 69 | 8 | 5 | 342 | 2 | 249 | 5.10e-98 | 298 |
MS.gene25358.t1 | MTR_7g446510 | 53.500 | 200 | 77 | 5 | 147 | 342 | 77 | 264 | 3.60e-55 | 188 |
MS.gene25358.t1 | MTR_7g446510 | 61.062 | 113 | 36 | 3 | 346 | 452 | 48 | 158 | 1.54e-31 | 124 |
MS.gene25358.t1 | MTR_1g070355 | 31.651 | 218 | 143 | 2 | 125 | 342 | 47 | 258 | 1.58e-28 | 119 |
MS.gene25358.t1 | MTR_5g076070 | 30.464 | 151 | 105 | 0 | 168 | 318 | 65 | 215 | 3.05e-22 | 97.1 |
MS.gene25358.t1 | MTR_6g022080 | 25.926 | 189 | 136 | 3 | 133 | 318 | 60 | 247 | 4.01e-17 | 81.3 |
MS.gene25358.t1 | MTR_8g467420 | 43.836 | 73 | 41 | 0 | 139 | 211 | 61 | 133 | 9.53e-17 | 78.2 |
MS.gene25358.t1 | MTR_0402s0040 | 32.524 | 206 | 109 | 9 | 158 | 352 | 28 | 214 | 2.00e-15 | 79.0 |
MS.gene25358.t1 | MTR_3g448650 | 35.433 | 127 | 70 | 2 | 107 | 231 | 41 | 157 | 8.22e-15 | 73.2 |
MS.gene25358.t1 | MTR_2g101460 | 30.769 | 169 | 105 | 2 | 107 | 273 | 14 | 172 | 2.12e-14 | 72.8 |
MS.gene25358.t1 | MTR_6g053140 | 30.286 | 175 | 106 | 5 | 98 | 270 | 47 | 207 | 3.38e-14 | 72.0 |
MS.gene25358.t1 | MTR_1g008290 | 30.882 | 136 | 89 | 2 | 216 | 351 | 10 | 140 | 7.20e-14 | 69.3 |
MS.gene25358.t1 | MTR_0060s0090 | 38.462 | 78 | 48 | 0 | 161 | 238 | 61 | 138 | 1.36e-13 | 68.9 |
MS.gene25358.t1 | MTR_2g101460 | 30.864 | 162 | 100 | 2 | 114 | 273 | 11 | 162 | 2.02e-13 | 69.7 |
MS.gene25358.t1 | MTR_2g098880 | 36.752 | 117 | 71 | 3 | 150 | 264 | 55 | 170 | 7.17e-13 | 68.9 |
MS.gene25358.t1 | MTR_2g098880 | 36.752 | 117 | 71 | 3 | 150 | 264 | 67 | 182 | 9.49e-13 | 68.9 |
MS.gene25358.t1 | MTR_6g051425 | 26.425 | 193 | 138 | 3 | 166 | 355 | 27 | 218 | 2.48e-11 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25358.t1 | AT4G38180 | 32.828 | 198 | 129 | 4 | 160 | 355 | 77 | 272 | 1.65e-16 | 83.2 |
MS.gene25358.t1 | AT3G07500 | 37.719 | 114 | 67 | 3 | 151 | 263 | 28 | 138 | 4.09e-12 | 66.2 |
Find 84 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATAAGAACTTGTCATATAA+TGG | 0.240494 | 8.2:-39126092 | MS.gene25358:CDS |
TGCATTTACACCTTGTTTAT+CGG | 0.260369 | 8.2:-39126165 | MS.gene25358:CDS |
TGTTCACTACAGACCCAAAA+AGG | 0.266221 | 8.2:-39126251 | MS.gene25358:CDS |
TGTGCTTCTTTGGCTTGTTC+AGG | 0.269948 | 8.2:+39124101 | None:intergenic |
ACTCTGTCATCTTTGTTAGA+TGG | 0.289359 | 8.2:+39123869 | None:intergenic |
CGCAATATAATCAAATATTC+TGG | 0.294303 | 8.2:+39124869 | None:intergenic |
AGTGATGATGGTGGTTGTTC+TGG | 0.317361 | 8.2:-39126712 | MS.gene25358:CDS |
ATTAACTGCTGAAGGAATAA+TGG | 0.327415 | 8.2:-39126506 | MS.gene25358:CDS |
CTGTTAAGAAGAGTGATATT+AGG | 0.348071 | 8.2:-39126414 | MS.gene25358:CDS |
GTAGAACCGTAATCATATTT+CGG | 0.389914 | 8.2:+39126910 | None:intergenic |
AGTCTCCTTGATGCCCTAAC+AGG | 0.395341 | 8.2:+39124047 | None:intergenic |
ATAAGAACTTGTCATATAAT+GGG | 0.396367 | 8.2:-39126091 | MS.gene25358:CDS |
TGCTGAAGGAATAATGGAAA+TGG | 0.417359 | 8.2:-39126500 | MS.gene25358:CDS |
CGTGTGGTGAGGCACCTGTT+AGG | 0.420139 | 8.2:-39124061 | MS.gene25358:CDS |
TGAGGCTGCTGAAATCTATA+CGG | 0.433917 | 8.2:-39125136 | MS.gene25358:intron |
TGTAAATGCACAACACTAGA+TGG | 0.434308 | 8.2:+39126178 | None:intergenic |
GGTTCACCGAAATATGATTA+CGG | 0.436818 | 8.2:-39126916 | MS.gene25358:CDS |
GATTATAGTGTTGGTGATAA+AGG | 0.444719 | 8.2:-39126688 | MS.gene25358:CDS |
TTTAAGTACTGTAAGTGTAA+AGG | 0.451106 | 8.2:-39126442 | MS.gene25358:CDS |
GACGATAGTTCTGATGAAAC+TGG | 0.457084 | 8.2:-39126745 | MS.gene25358:CDS |
AAGGGTGGATATCCTGGTGT+TGG | 0.458467 | 8.2:-39126052 | MS.gene25358:CDS |
AAGCCAAAGAAGCACAGAAA+AGG | 0.460028 | 8.2:-39124094 | MS.gene25358:CDS |
GCTCAGAAGGGTGGATATCC+TGG | 0.461189 | 8.2:-39126058 | MS.gene25358:CDS |
AAACCTATCCGATGATTGTT+GGG | 0.461967 | 8.2:-39126867 | MS.gene25358:CDS |
ATTGTTCATTGTCGTGACTT+TGG | 0.463049 | 8.2:+39123925 | None:intergenic |
TAGTGAACACGAAGCCTAGC+TGG | 0.465685 | 8.2:+39126265 | None:intergenic |
GCAGATAAAGCACAAATTGA+TGG | 0.466709 | 8.2:-39126130 | MS.gene25358:CDS |
CACTAGATGGAGTAAGTTCA+TGG | 0.468010 | 8.2:+39126191 | None:intergenic |
TGTTCTGGTGATTATAGTGT+TGG | 0.469535 | 8.2:-39126697 | MS.gene25358:CDS |
GAGAGAAGAAGCATTTATCA+AGG | 0.474767 | 8.2:-39126333 | MS.gene25358:CDS |
AGGGTGGATATCCTGGTGTT+GGG | 0.476260 | 8.2:-39126051 | MS.gene25358:CDS |
AATAATGGAAATGGAATTTG+CGG | 0.487093 | 8.2:-39126491 | MS.gene25358:CDS |
GGGATACATTGTGGCTCAGA+AGG | 0.492920 | 8.2:-39126071 | MS.gene25358:CDS |
GAAACCTATCCGATGATTGT+TGG | 0.493181 | 8.2:-39126868 | MS.gene25358:CDS |
AATGTAGATGATAGTTCTGA+TGG | 0.493462 | 8.2:-39126811 | MS.gene25358:CDS |
GCAGTATGTATGCAACAAGC+AGG | 0.502107 | 8.2:-39126362 | MS.gene25358:CDS |
TGTAGTTGTTGGTGAGGAAA+TGG | 0.504666 | 8.2:-39126542 | MS.gene25358:CDS |
GAAGATGATGATGTAGTTGT+TGG | 0.505754 | 8.2:-39126553 | MS.gene25358:CDS |
GTGAAAGAAGAGATTATGAA+AGG | 0.507624 | 8.2:-39125096 | MS.gene25358:CDS |
ATAATGGAAATGGAATTTGC+GGG | 0.512795 | 8.2:-39126490 | MS.gene25358:CDS |
CCGATGATTGTTGGGAGTCA+AGG | 0.516932 | 8.2:-39126859 | MS.gene25358:CDS |
ATAAATTCATTAACTGCTGA+AGG | 0.519495 | 8.2:-39126514 | MS.gene25358:CDS |
CCTTGACTCCCAACAATCAT+CGG | 0.519588 | 8.2:+39126859 | None:intergenic |
AGCATTTATCAAGGTCAGAT+AGG | 0.519899 | 8.2:-39126324 | MS.gene25358:CDS |
AATATTTGATTATATTGCGT+TGG | 0.522218 | 8.2:-39124865 | MS.gene25358:CDS |
TAGGGCATCAAGGAGACTAA+TGG | 0.526483 | 8.2:-39124042 | MS.gene25358:CDS |
GTGTGGTGAGGCACCTGTTA+GGG | 0.531715 | 8.2:-39124060 | MS.gene25358:CDS |
CAGAATTCTCAAGCGAATGC+AGG | 0.540569 | 8.2:-39126769 | MS.gene25358:CDS |
TTGACAAAATATATTGAGGA+AGG | 0.543857 | 8.2:-39125018 | MS.gene25358:CDS |
TGATTACGGTTCTACGAATG+TGG | 0.550987 | 8.2:-39126902 | MS.gene25358:CDS |
TGTTTATCGGCAAATATTCG+AGG | 0.554010 | 8.2:-39126152 | MS.gene25358:CDS |
CGAATATTTGCCGATAAACA+AGG | 0.558539 | 8.2:+39126155 | None:intergenic |
TGGCAGGATAAGAACATAGA+CGG | 0.565361 | 8.2:-39124143 | MS.gene25358:intron |
TTCTTAGTGAACCCAACACC+AGG | 0.567834 | 8.2:+39126040 | None:intergenic |
TTGTTGGTGAGGAAATGGTA+AGG | 0.572827 | 8.2:-39126537 | MS.gene25358:CDS |
AGGCACCTGTTAGGGCATCA+AGG | 0.577424 | 8.2:-39124052 | MS.gene25358:CDS |
ACTCCCAACAATCATCGGAT+AGG | 0.580782 | 8.2:+39126864 | None:intergenic |
TACATTGTGGCTCAGAAGGG+TGG | 0.583038 | 8.2:-39126067 | MS.gene25358:CDS |
CAGTATGTATGCAACAAGCA+GGG | 0.584535 | 8.2:-39126361 | MS.gene25358:CDS |
GAAGTTGACAAAATATATTG+AGG | 0.598462 | 8.2:-39125022 | MS.gene25358:CDS |
GGAGGCAATGAAAGTGATGA+TGG | 0.602419 | 8.2:-39126724 | MS.gene25358:CDS |
TCATATAATGGGATACATTG+TGG | 0.603031 | 8.2:-39126080 | MS.gene25358:CDS |
AGTGAAGGTCATGGTAGTGA+AGG | 0.614950 | 8.2:-39126592 | MS.gene25358:CDS |
GGTGAAGATGATGAAAGTCA+AGG | 0.619507 | 8.2:-39126667 | MS.gene25358:CDS |
GAAAGGTGTTGCAATGAGTG+TGG | 0.626883 | 8.2:-39125079 | MS.gene25358:CDS |
CAAGAAATTTGAATCTCGAG+AGG | 0.629020 | 8.2:-39124944 | MS.gene25358:intron |
AGTATGTATGCAACAAGCAG+GGG | 0.634341 | 8.2:-39126360 | MS.gene25358:CDS |
ATGTAGATGATAGTTCTGAT+GGG | 0.634382 | 8.2:-39126810 | MS.gene25358:CDS |
GGATACATTGTGGCTCAGAA+GGG | 0.635876 | 8.2:-39126070 | MS.gene25358:CDS |
GATAGTTCTGATGGGAGTCG+TGG | 0.635892 | 8.2:-39126802 | MS.gene25358:CDS |
CTCGTACAAAGTGTCCAGCT+AGG | 0.644688 | 8.2:-39126279 | MS.gene25358:CDS |
GAAAAGAAGAACGTGTGGTG+AGG | 0.652176 | 8.2:-39124072 | MS.gene25358:CDS |
GAAAGTGATGAAAGTGAAGG+TGG | 0.661484 | 8.2:-39126634 | MS.gene25358:CDS |
TGATGATGTAGTTGTTGGTG+AGG | 0.665725 | 8.2:-39126548 | MS.gene25358:CDS |
TTAACGATGAGATTGTAATG+AGG | 0.666140 | 8.2:-39126384 | MS.gene25358:CDS |
GGTGATGAAAGTGAAGGTCA+TGG | 0.667300 | 8.2:-39126601 | MS.gene25358:CDS |
AAAAGGAAAAGAAGAACGTG+TGG | 0.672916 | 8.2:-39124077 | MS.gene25358:CDS |
AGTGAAGGTGGTGAAACTGA+AGG | 0.681173 | 8.2:-39126622 | MS.gene25358:CDS |
GGATAAGAACATAGACGGCG+AGG | 0.683636 | 8.2:-39124138 | MS.gene25358:CDS |
AGGTGTTGCAATGAGTGTGG+AGG | 0.696599 | 8.2:-39125076 | MS.gene25358:CDS |
GGCAATGAAAGTGATGATGG+TGG | 0.706532 | 8.2:-39126721 | MS.gene25358:CDS |
GATAGTTCTGATGAAACTGG+AGG | 0.707194 | 8.2:-39126742 | MS.gene25358:CDS |
AGTGAAAGTGATGAAAGTGA+AGG | 0.717258 | 8.2:-39126637 | MS.gene25358:CDS |
ACTGAAGGTGATGAAAGTGA+AGG | 0.722369 | 8.2:-39126607 | MS.gene25358:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAACAATAGAAACTTATATG+TGG | - | chr8.2:39125125-39125144 | MS.gene25358:CDS | 20.0% |
!! | AAATTGAGAAGTTAATCAAA+AGG | + | chr8.2:39126659-39126678 | None:intergenic | 20.0% |
!! | AACAATAGAAACTTATATGT+GGG | - | chr8.2:39125126-39125145 | MS.gene25358:CDS | 20.0% |
!! | AATAAGAACTTGTCATATAA+TGG | - | chr8.2:39124731-39124750 | MS.gene25358:intron | 20.0% |
!! | AATATTTGATTATATTGCGT+TGG | - | chr8.2:39125958-39125977 | MS.gene25358:CDS | 20.0% |
!! | ATAAGAACTTGTCATATAAT+GGG | - | chr8.2:39124732-39124751 | MS.gene25358:intron | 20.0% |
!! | CCTTCAACAAAAAAAAATAT+GGG | + | chr8.2:39125914-39125933 | None:intergenic | 20.0% |
!! | CTTAAAAAACAACATATATG+AGG | + | chr8.2:39126848-39126867 | None:intergenic | 20.0% |
!! | TCCTTCAACAAAAAAAAATA+TGG | + | chr8.2:39125915-39125934 | None:intergenic | 20.0% |
!!! | AAAAAACAACAATGACTTTT+CGG | - | chr8.2:39123879-39123898 | MS.gene25358:CDS | 20.0% |
!!! | ACATGGATAATTTTTGATTT+AGG | - | chr8.2:39126872-39126891 | MS.gene25358:CDS | 20.0% |
!!! | ATTTCTGTATAATTTTGATG+AGG | - | chr8.2:39125570-39125589 | MS.gene25358:intron | 20.0% |
!!! | CTCATATATGTTGTTTTTTA+AGG | - | chr8.2:39126846-39126865 | MS.gene25358:CDS | 20.0% |
!!! | TTGATTAACTTCTCAATTTT+TGG | - | chr8.2:39126660-39126679 | MS.gene25358:CDS | 20.0% |
! | ATAAATTCATTAACTGCTGA+AGG | - | chr8.2:39124309-39124328 | MS.gene25358:intron | 25.0% |
! | ATATATGAGGTCAAGAATAT+GGG | + | chr8.2:39126835-39126854 | None:intergenic | 25.0% |
! | CCAACAATGTGTTTAAATAT+AGG | - | chr8.2:39126596-39126615 | MS.gene25358:CDS | 25.0% |
! | CCTATATTTAAACACATTGT+TGG | + | chr8.2:39126599-39126618 | None:intergenic | 25.0% |
! | CGCAATATAATCAAATATTC+TGG | + | chr8.2:39125957-39125976 | None:intergenic | 25.0% |
! | GAAGTTGACAAAATATATTG+AGG | - | chr8.2:39125801-39125820 | MS.gene25358:intron | 25.0% |
! | TTGACAAAATATATTGAGGA+AGG | - | chr8.2:39125805-39125824 | MS.gene25358:intron | 25.0% |
! | TTTCATACAATCTAGAAAAC+TGG | + | chr8.2:39125158-39125177 | None:intergenic | 25.0% |
!! | AAAAATGCGTGTTGTTATTA+AGG | - | chr8.2:39124830-39124849 | MS.gene25358:intron | 25.0% |
!! | AATAATGGAAATGGAATTTG+CGG | - | chr8.2:39124332-39124351 | MS.gene25358:intron | 25.0% |
!! | AGCAATGTACTCTAATTTTA+CGG | - | chr8.2:39125336-39125355 | MS.gene25358:intron | 25.0% |
!! | ATAACATATCTACCCTTTTT+GGG | + | chr8.2:39124588-39124607 | None:intergenic | 25.0% |
!! | TTTAAGTACTGTAAGTGTAA+AGG | - | chr8.2:39124381-39124400 | MS.gene25358:intron | 25.0% |
!!! | ACGTTTGAAATGTCTATTTT+GGG | - | chr8.2:39124944-39124963 | MS.gene25358:intron | 25.0% |
!!! | AGATCAGATTATTTCTGTTT+TGG | - | chr8.2:39124981-39125000 | MS.gene25358:CDS | 25.0% |
!!! | CCCATATTTTTTTTTGTTGA+AGG | - | chr8.2:39125911-39125930 | MS.gene25358:intron | 25.0% |
!!! | GTTGTTTTTTAAGGTTAACA+TGG | - | chr8.2:39126855-39126874 | MS.gene25358:CDS | 25.0% |
!!! | TGGATAATTTTTGATTTAGG+AGG | - | chr8.2:39126875-39126894 | MS.gene25358:CDS | 25.0% |
!!! | TGTTAACAATTCAGCTTTTT+TGG | - | chr8.2:39125300-39125319 | MS.gene25358:intron | 25.0% |
!!! | TTGTTGTTTTTTTTTCCATC+TGG | + | chr8.2:39123871-39123890 | None:intergenic | 25.0% |
ATTAACTGCTGAAGGAATAA+TGG | - | chr8.2:39124317-39124336 | MS.gene25358:intron | 30.0% | |
CAAAAAAAAATATGGGAGCA+TGG | + | chr8.2:39125907-39125926 | None:intergenic | 30.0% | |
CAAATATAACTGTTTGTGAG+TGG | + | chr8.2:39125084-39125103 | None:intergenic | 30.0% | |
CACTCACAAACAGTTATATT+TGG | - | chr8.2:39125082-39125101 | MS.gene25358:CDS | 30.0% | |
CATATATGAGGTCAAGAATA+TGG | + | chr8.2:39126836-39126855 | None:intergenic | 30.0% | |
CTGTTAAGAAGAGTGATATT+AGG | - | chr8.2:39124409-39124428 | MS.gene25358:intron | 30.0% | |
GGTACTTACATTCATATTCA+CGG | + | chr8.2:39126578-39126597 | None:intergenic | 30.0% | |
GTAGAACCGTAATCATATTT+CGG | + | chr8.2:39123916-39123935 | None:intergenic | 30.0% | |
GTGAAAGAAGAGATTATGAA+AGG | - | chr8.2:39125727-39125746 | MS.gene25358:intron | 30.0% | |
TATATTGCGTTGGACAAAAA+AGG | - | chr8.2:39125968-39125987 | MS.gene25358:CDS | 30.0% | |
TTAACGATGAGATTGTAATG+AGG | - | chr8.2:39124439-39124458 | MS.gene25358:intron | 30.0% | |
TTGTAAGAATGTTCAAACTG+TGG | - | chr8.2:39126002-39126021 | MS.gene25358:CDS | 30.0% | |
! | AACAATGACTTTTCGGATTT+TGG | - | chr8.2:39123886-39123905 | MS.gene25358:CDS | 30.0% |
! | AGAAGGAATTTGAAGAGTTT+TGG | - | chr8.2:39125359-39125378 | MS.gene25358:intron | 30.0% |
! | ATAATGGAAATGGAATTTGC+GGG | - | chr8.2:39124333-39124352 | MS.gene25358:intron | 30.0% |
! | CATAACATATCTACCCTTTT+TGG | + | chr8.2:39124589-39124608 | None:intergenic | 30.0% |
! | GAAGGAATTTGAAGAGTTTT+GGG | - | chr8.2:39125360-39125379 | MS.gene25358:intron | 30.0% |
! | TCATATAATGGGATACATTG+TGG | - | chr8.2:39124743-39124762 | MS.gene25358:intron | 30.0% |
! | TGCATTTACACCTTGTTTAT+CGG | - | chr8.2:39124658-39124677 | MS.gene25358:intron | 30.0% |
!! | AAGAGTTATGTTCTGAAGAA+AGG | - | chr8.2:39125535-39125554 | MS.gene25358:intron | 30.0% |
!! | AATGTAGATGATAGTTCTGA+TGG | - | chr8.2:39124012-39124031 | MS.gene25358:intron | 30.0% |
!! | ATGTAGATGATAGTTCTGAT+GGG | - | chr8.2:39124013-39124032 | MS.gene25358:intron | 30.0% |
!! | GACGTTTGAAATGTCTATTT+TGG | - | chr8.2:39124943-39124962 | MS.gene25358:intron | 30.0% |
!! | GATTATAGTGTTGGTGATAA+AGG | - | chr8.2:39124135-39124154 | MS.gene25358:CDS | 30.0% |
!!! | AACAATTCAGCTTTTTTGGA+TGG | - | chr8.2:39125304-39125323 | MS.gene25358:intron | 30.0% |
!!! | TTAACTTCTCAATTTTTGGC+AGG | - | chr8.2:39126664-39126683 | MS.gene25358:CDS | 30.0% |
AAAAGGAAAAGAAGAACGTG+TGG | - | chr8.2:39126746-39126765 | MS.gene25358:CDS | 35.0% | |
AAACCTATCCGATGATTGTT+GGG | - | chr8.2:39123956-39123975 | MS.gene25358:intron | 35.0% | |
ACTCTGTCATCTTTGTTAGA+TGG | + | chr8.2:39126957-39126976 | None:intergenic | 35.0% | |
AGCATTTATCAAGGTCAGAT+AGG | - | chr8.2:39124499-39124518 | MS.gene25358:intron | 35.0% | |
AGTGAAAGTGATGAAAGTGA+AGG | - | chr8.2:39124186-39124205 | MS.gene25358:intron | 35.0% | |
AGTGGTAGAATATTGACAAG+AGG | + | chr8.2:39124916-39124935 | None:intergenic | 35.0% | |
ATAGGAGAACAAGGAATTGT+GGG | - | chr8.2:39125435-39125454 | MS.gene25358:intron | 35.0% | |
ATATAACTGTTTGTGAGTGG+TGG | + | chr8.2:39125081-39125100 | None:intergenic | 35.0% | |
ATTGTTCATTGTCGTGACTT+TGG | + | chr8.2:39126901-39126920 | None:intergenic | 35.0% | |
CAAGAAATTTGAATCTCGAG+AGG | - | chr8.2:39125879-39125898 | MS.gene25358:intron | 35.0% | |
CAATATTCTACCACTGATGA+TGG | - | chr8.2:39124921-39124940 | MS.gene25358:intron | 35.0% | |
CATGATAGCCAAAAAAATGC+GGG | - | chr8.2:39126092-39126111 | MS.gene25358:CDS | 35.0% | |
CGAATATTTGCCGATAAACA+AGG | + | chr8.2:39124671-39124690 | None:intergenic | 35.0% | |
GAACAAATACAACTATCCGT+TGG | - | chr8.2:39125037-39125056 | MS.gene25358:CDS | 35.0% | |
GAATATTGACAAGAGGAATG+TGG | + | chr8.2:39124909-39124928 | None:intergenic | 35.0% | |
GCAGATAAAGCACAAATTGA+TGG | - | chr8.2:39124693-39124712 | MS.gene25358:intron | 35.0% | |
GCATGATAGCCAAAAAAATG+CGG | - | chr8.2:39126091-39126110 | MS.gene25358:CDS | 35.0% | |
GGTTCACCGAAATATGATTA+CGG | - | chr8.2:39123907-39123926 | MS.gene25358:CDS | 35.0% | |
TACCAAAACATAGGAGAACA+AGG | - | chr8.2:39125426-39125445 | MS.gene25358:intron | 35.0% | |
TGTAAATGCACAACACTAGA+TGG | + | chr8.2:39124648-39124667 | None:intergenic | 35.0% | |
TGTTCTGGTGATTATAGTGT+TGG | - | chr8.2:39124126-39124145 | MS.gene25358:CDS | 35.0% | |
TGTTTATCGGCAAATATTCG+AGG | - | chr8.2:39124671-39124690 | MS.gene25358:intron | 35.0% | |
! | GAAGATGATGATGTAGTTGT+TGG | - | chr8.2:39124270-39124289 | MS.gene25358:intron | 35.0% |
! | GTACTCTAATTTTACGGAGA+AGG | - | chr8.2:39125342-39125361 | MS.gene25358:intron | 35.0% |
! | TGCTGAAGGAATAATGGAAA+TGG | - | chr8.2:39124323-39124342 | MS.gene25358:intron | 35.0% |
! | TTCCTTGTTCTCCTATGTTT+TGG | + | chr8.2:39125431-39125450 | None:intergenic | 35.0% |
! | TTTCCTTTTCTGTGCTTCTT+TGG | + | chr8.2:39126735-39126754 | None:intergenic | 35.0% |
!! | AAATGTCTATTTTGGGCAGA+TGG | - | chr8.2:39124951-39124970 | MS.gene25358:CDS | 35.0% |
!! | AATTTTGATGAGGCAATGAG+AGG | - | chr8.2:39125580-39125599 | MS.gene25358:intron | 35.0% |
!! | AGTTATATTTGGTGCTGCAT+TGG | - | chr8.2:39125093-39125112 | MS.gene25358:CDS | 35.0% |
!! | GAGAGAAGAAGCATTTATCA+AGG | - | chr8.2:39124490-39124509 | MS.gene25358:intron | 35.0% |
!!! | TTATTTCTGTTTTGGCGATG+TGG | - | chr8.2:39124989-39125008 | MS.gene25358:CDS | 35.0% |
AAAGGGATGTAGTTAAAGCG+AGG | - | chr8.2:39126531-39126550 | MS.gene25358:CDS | 40.0% | |
ACTGAAGGTGATGAAAGTGA+AGG | - | chr8.2:39124216-39124235 | MS.gene25358:intron | 40.0% | |
AGACGTGGTAGAAGGATTAA+AGG | - | chr8.2:39126513-39126532 | MS.gene25358:CDS | 40.0% | |
AGTATGTATGCAACAAGCAG+GGG | - | chr8.2:39124463-39124482 | MS.gene25358:intron | 40.0% | |
CAAAGGGAGGAAAATCAAAG+TGG | - | chr8.2:39126123-39126142 | MS.gene25358:CDS | 40.0% | |
CACTAGATGGAGTAAGTTCA+TGG | + | chr8.2:39124635-39124654 | None:intergenic | 40.0% | |
CAGTATGTATGCAACAAGCA+GGG | - | chr8.2:39124462-39124481 | MS.gene25358:intron | 40.0% | |
CATAGGAGAACAAGGAATTG+TGG | - | chr8.2:39125434-39125453 | MS.gene25358:intron | 40.0% | |
CATGCTAGCCAAAAAAACGT+GGG | - | chr8.2:39126397-39126416 | MS.gene25358:CDS | 40.0% | |
CCAAAAGCAGTTGTAACAGA+TGG | - | chr8.2:39125184-39125203 | MS.gene25358:intron | 40.0% | |
GAAACCTATCCGATGATTGT+TGG | - | chr8.2:39123955-39123974 | MS.gene25358:intron | 40.0% | |
GAAAGTGATGAAAGTGAAGG+TGG | - | chr8.2:39124189-39124208 | MS.gene25358:intron | 40.0% | |
GACGTGGTAGAAGGATTAAA+GGG | - | chr8.2:39126514-39126533 | MS.gene25358:CDS | 40.0% | |
GGTGAAGATGATGAAAGTCA+AGG | - | chr8.2:39124156-39124175 | MS.gene25358:intron | 40.0% | |
GTGGAGGAAAAAGAAGTGAA+GGG | - | chr8.2:39125763-39125782 | MS.gene25358:intron | 40.0% | |
GTTCACTACAGACCCAAAAA+GGG | - | chr8.2:39124573-39124592 | MS.gene25358:intron | 40.0% | |
TACCTGCGTGACAATTTCTT+TGG | - | chr8.2:39125466-39125485 | MS.gene25358:intron | 40.0% | |
TAGTTAAAGCGAGGTTGTCA+AGG | - | chr8.2:39126540-39126559 | MS.gene25358:CDS | 40.0% | |
TCATGCTAGCCAAAAAAACG+TGG | - | chr8.2:39126396-39126415 | MS.gene25358:CDS | 40.0% | |
TGAGGCTGCTGAAATCTATA+CGG | - | chr8.2:39125687-39125706 | MS.gene25358:intron | 40.0% | |
TGATTACGGTTCTACGAATG+TGG | - | chr8.2:39123921-39123940 | MS.gene25358:CDS | 40.0% | |
TGGCAGGATAAGAACATAGA+CGG | - | chr8.2:39126680-39126699 | MS.gene25358:CDS | 40.0% | |
TGGCTATCATGCTGAGATAT+GGG | + | chr8.2:39126083-39126102 | None:intergenic | 40.0% | |
TGTGGAGGAAAAAGAAGTGA+AGG | - | chr8.2:39125762-39125781 | MS.gene25358:intron | 40.0% | |
TGTTCACTACAGACCCAAAA+AGG | - | chr8.2:39124572-39124591 | MS.gene25358:intron | 40.0% | |
TTGGCTATCATGCTGAGATA+TGG | + | chr8.2:39126084-39126103 | None:intergenic | 40.0% | |
TTTCAAACGTCCATCATCAG+TGG | + | chr8.2:39124934-39124953 | None:intergenic | 40.0% | |
! | AAGCCAAAGAAGCACAGAAA+AGG | - | chr8.2:39126729-39126748 | MS.gene25358:CDS | 40.0% |
! | AGTGCTTGCAGAACATTTTC+TGG | + | chr8.2:39126045-39126064 | None:intergenic | 40.0% |
! | ATCCTTCTACCACGTCTTTT+TGG | + | chr8.2:39126510-39126529 | None:intergenic | 40.0% |
! | ATCCTTCTGCCATGTCTTTT+TGG | + | chr8.2:39126205-39126224 | None:intergenic | 40.0% |
! | CCATCTGTTACAACTGCTTT+TGG | + | chr8.2:39125187-39125206 | None:intergenic | 40.0% |
! | TGATGATGTAGTTGTTGGTG+AGG | - | chr8.2:39124275-39124294 | MS.gene25358:intron | 40.0% |
! | TGTAGTTGTTGGTGAGGAAA+TGG | - | chr8.2:39124281-39124300 | MS.gene25358:intron | 40.0% |
! | TTGTTGGTGAGGAAATGGTA+AGG | - | chr8.2:39124286-39124305 | MS.gene25358:intron | 40.0% |
!! | GACGATAGTTCTGATGAAAC+TGG | - | chr8.2:39124078-39124097 | MS.gene25358:CDS | 40.0% |
!! | GATAGTTCTGATGAAACTGG+AGG | - | chr8.2:39124081-39124100 | MS.gene25358:CDS | 40.0% |
!!! | ATCCTTCTCCCACGTTTTTT+TGG | + | chr8.2:39126408-39126427 | None:intergenic | 40.0% |
!!! | ATCCTTCTCCCGCATTTTTT+TGG | + | chr8.2:39126103-39126122 | None:intergenic | 40.0% |
!!! | TCCTATGTTTTGGTAACCCA+GGG | + | chr8.2:39125421-39125440 | None:intergenic | 40.0% |
AAATGCGGGAGAAGGATCAA+AGG | - | chr8.2:39126106-39126125 | MS.gene25358:CDS | 45.0% | |
AATGCGGGAGAAGGATCAAA+GGG | - | chr8.2:39126107-39126126 | MS.gene25358:CDS | 45.0% | |
ACTCCCAACAATCATCGGAT+AGG | + | chr8.2:39123962-39123981 | None:intergenic | 45.0% | |
AGAGGAATGTGGATCAGTTG+AGG | + | chr8.2:39124898-39124917 | None:intergenic | 45.0% | |
AGCCAAAAAAACGTGGGAGA+AGG | - | chr8.2:39126403-39126422 | MS.gene25358:CDS | 45.0% | |
AGCCAAAAAAATGCGGGAGA+AGG | - | chr8.2:39126098-39126117 | MS.gene25358:CDS | 45.0% | |
AGCCAAAAAGACATGGCAGA+AGG | - | chr8.2:39126200-39126219 | MS.gene25358:CDS | 45.0% | |
AGTGAAGGTGGTGAAACTGA+AGG | - | chr8.2:39124201-39124220 | MS.gene25358:intron | 45.0% | |
ATGGCAGAAGGATCAAAGAG+AGG | - | chr8.2:39126212-39126231 | MS.gene25358:CDS | 45.0% | |
CACCAAAGAAATTGTCACGC+AGG | + | chr8.2:39125471-39125490 | None:intergenic | 45.0% | |
CAGAATTCTCAAGCGAATGC+AGG | - | chr8.2:39124054-39124073 | MS.gene25358:CDS | 45.0% | |
CCTTGACTCCCAACAATCAT+CGG | + | chr8.2:39123967-39123986 | None:intergenic | 45.0% | |
CTGCGTGACAATTTCTTTGG+TGG | - | chr8.2:39125469-39125488 | MS.gene25358:intron | 45.0% | |
GAAAAGAAGAACGTGTGGTG+AGG | - | chr8.2:39126751-39126770 | MS.gene25358:CDS | 45.0% | |
GCAGCAGACAAAATCACCAA+CGG | + | chr8.2:39125056-39125075 | None:intergenic | 45.0% | |
GCAGTATGTATGCAACAAGC+AGG | - | chr8.2:39124461-39124480 | MS.gene25358:intron | 45.0% | |
GCAGTTGTAACAGATGGTGA+CGG | - | chr8.2:39125190-39125209 | MS.gene25358:intron | 45.0% | |
GGAGGCAATGAAAGTGATGA+TGG | - | chr8.2:39124099-39124118 | MS.gene25358:CDS | 45.0% | |
GGATACATTGTGGCTCAGAA+GGG | - | chr8.2:39124753-39124772 | MS.gene25358:intron | 45.0% | |
GGTGATGAAAGTGAAGGTCA+TGG | - | chr8.2:39124222-39124241 | MS.gene25358:intron | 45.0% | |
TAACCCAGGGATTGTTCTCA+AGG | + | chr8.2:39125408-39125427 | None:intergenic | 45.0% | |
TCCCTGGGTTACCAAAACAT+AGG | - | chr8.2:39125417-39125436 | MS.gene25358:intron | 45.0% | |
TCTGCATTGTCTTGAACGTG+AGG | - | chr8.2:39125669-39125688 | MS.gene25358:intron | 45.0% | |
TGCCAAAAAGACGTGGTAGA+AGG | - | chr8.2:39126505-39126524 | MS.gene25358:CDS | 45.0% | |
TTCTATGAGGGAGGCGATAA+AGG | - | chr8.2:39125213-39125232 | MS.gene25358:intron | 45.0% | |
TTCTTAGTGAACCCAACACC+AGG | + | chr8.2:39124786-39124805 | None:intergenic | 45.0% | |
TTGGCTAGCATGATGAGACA+TGG | + | chr8.2:39126389-39126408 | None:intergenic | 45.0% | |
! | AGTGAAGGTCATGGTAGTGA+AGG | - | chr8.2:39124231-39124250 | MS.gene25358:intron | 45.0% |
! | ATCCTTTTCCCACGTCTTTC+TGG | + | chr8.2:39126306-39126325 | None:intergenic | 45.0% |
! | TAGGGCATCAAGGAGACTAA+TGG | - | chr8.2:39126781-39126800 | MS.gene25358:CDS | 45.0% |
!! | AGATGGTGACGGTTCTATGA+GGG | - | chr8.2:39125201-39125220 | MS.gene25358:intron | 45.0% |
!! | AGTGATGATGGTGGTTGTTC+TGG | - | chr8.2:39124111-39124130 | MS.gene25358:CDS | 45.0% |
!! | ATTTGGTGCTGCATTGGTGA+TGG | - | chr8.2:39125099-39125118 | MS.gene25358:CDS | 45.0% |
!! | GAAAGGTGTTGCAATGAGTG+TGG | - | chr8.2:39125744-39125763 | MS.gene25358:intron | 45.0% |
!! | GGCAATGAAAGTGATGATGG+TGG | - | chr8.2:39124102-39124121 | MS.gene25358:CDS | 45.0% |
!! | TGTGCTTCTTTGGCTTGTTC+AGG | + | chr8.2:39126725-39126744 | None:intergenic | 45.0% |
!!! | CTCCTATGTTTTGGTAACCC+AGG | + | chr8.2:39125422-39125441 | None:intergenic | 45.0% |
!!! | TGAAGAGTTTTGGGCTGACT+TGG | - | chr8.2:39125369-39125388 | MS.gene25358:intron | 45.0% |
AAGGGTGGATATCCTGGTGT+TGG | - | chr8.2:39124771-39124790 | MS.gene25358:intron | 50.0% | |
AGCCAGAAAGACGTGGGAAA+AGG | - | chr8.2:39126301-39126320 | MS.gene25358:CDS | 50.0% | |
AGGGTGGATATCCTGGTGTT+GGG | - | chr8.2:39124772-39124791 | MS.gene25358:intron | 50.0% | |
AGTCTCCTTGATGCCCTAAC+AGG | + | chr8.2:39126779-39126798 | None:intergenic | 50.0% | |
CAAAGACGATGACGCGTACT+TGG | + | chr8.2:39125247-39125266 | None:intergenic | 50.0% | |
CAGATGAGTTGTCAGCACAG+GGG | + | chr8.2:39125653-39125672 | None:intergenic | 50.0% | |
CAGCACAGGGGATGAAAACT+TGG | + | chr8.2:39125641-39125660 | None:intergenic | 50.0% | |
CATGCTAGCCAGAAAGACGT+GGG | - | chr8.2:39126295-39126314 | MS.gene25358:CDS | 50.0% | |
CCGATGATTGTTGGGAGTCA+AGG | - | chr8.2:39123964-39123983 | MS.gene25358:intron | 50.0% | |
GAGTGCTTGCCAAAAAGACG+TGG | - | chr8.2:39126498-39126517 | MS.gene25358:CDS | 50.0% | |
GCAGATGAGTTGTCAGCACA+GGG | + | chr8.2:39125654-39125673 | None:intergenic | 50.0% | |
GCCTGCTAGCCAAAAAGACA+TGG | - | chr8.2:39126193-39126212 | MS.gene25358:CDS | 50.0% | |
GGATAAGAACATAGACGGCG+AGG | - | chr8.2:39126685-39126704 | MS.gene25358:CDS | 50.0% | |
GGGATACATTGTGGCTCAGA+AGG | - | chr8.2:39124752-39124771 | MS.gene25358:intron | 50.0% | |
TACATTGTGGCTCAGAAGGG+TGG | - | chr8.2:39124756-39124775 | MS.gene25358:intron | 50.0% | |
TAGTGAACACGAAGCCTAGC+TGG | + | chr8.2:39124561-39124580 | None:intergenic | 50.0% | |
TGCAGATGAGTTGTCAGCAC+AGG | + | chr8.2:39125655-39125674 | None:intergenic | 50.0% | |
TGGCTAGCAGGCTGAGATTT+GGG | + | chr8.2:39126185-39126204 | None:intergenic | 50.0% | |
TGGCTAGCATGCTGAGACAT+GGG | + | chr8.2:39126286-39126305 | None:intergenic | 50.0% | |
TTGGCTAGCAGGCTGAGATT+TGG | + | chr8.2:39126186-39126205 | None:intergenic | 50.0% | |
! | AGGTGTTGCAATGAGTGTGG+AGG | - | chr8.2:39125747-39125766 | MS.gene25358:intron | 50.0% |
! | ATGGCCTTGAGAACAATCCC+TGG | - | chr8.2:39125401-39125420 | MS.gene25358:intron | 50.0% |
! | CTCGTACAAAGTGTCCAGCT+AGG | - | chr8.2:39124544-39124563 | MS.gene25358:intron | 50.0% |
! | TGGCCTTGAGAACAATCCCT+GGG | - | chr8.2:39125402-39125421 | MS.gene25358:intron | 50.0% |
!! | CAGATGGTGACGGTTCTATG+AGG | - | chr8.2:39125200-39125219 | MS.gene25358:intron | 50.0% |
!! | GATAGTTCTGATGGGAGTCG+TGG | - | chr8.2:39124021-39124040 | MS.gene25358:intron | 50.0% |
!! | GCTGACTTGGTGAGGGAAAA+TGG | - | chr8.2:39125382-39125401 | MS.gene25358:intron | 50.0% |
!!! | AGTTTTGGGCTGACTTGGTG+AGG | - | chr8.2:39125374-39125393 | MS.gene25358:intron | 50.0% |
!!! | GCCATGTCTTTTTGGCTAGC+AGG | + | chr8.2:39126197-39126216 | None:intergenic | 50.0% |
!!! | GTTTTGGGCTGACTTGGTGA+GGG | - | chr8.2:39125375-39125394 | MS.gene25358:intron | 50.0% |
CGCGTCATCGTCTTTGTGCT+TGG | - | chr8.2:39125251-39125270 | MS.gene25358:intron | 55.0% | |
CTGGCTAGCATGCTGAGACA+TGG | + | chr8.2:39126287-39126306 | None:intergenic | 55.0% | |
GCATGCTAGCCAGAAAGACG+TGG | - | chr8.2:39126294-39126313 | MS.gene25358:CDS | 55.0% | |
GCTCAGAAGGGTGGATATCC+TGG | - | chr8.2:39124765-39124784 | MS.gene25358:intron | 55.0% | |
! | AGGCACCTGTTAGGGCATCA+AGG | - | chr8.2:39126771-39126790 | MS.gene25358:CDS | 55.0% |
! | GTGTGGTGAGGCACCTGTTA+GGG | - | chr8.2:39126763-39126782 | MS.gene25358:CDS | 55.0% |
!! | TGGTGACGGTTCTATGAGGG+AGG | - | chr8.2:39125204-39125223 | MS.gene25358:intron | 55.0% |
GCGGGAGAAGGATCAAAGGG+AGG | - | chr8.2:39126110-39126129 | MS.gene25358:CDS | 60.0% | |
! | CGTGTGGTGAGGCACCTGTT+AGG | - | chr8.2:39126762-39126781 | MS.gene25358:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 39123865 | 39126980 | 39123865 | ID=MS.gene25358 |
chr8.2 | mRNA | 39123865 | 39126980 | 39123865 | ID=MS.gene25358.t1;Parent=MS.gene25358 |
chr8.2 | exon | 39125958 | 39126980 | 39125958 | ID=MS.gene25358.t1.exon1;Parent=MS.gene25358.t1 |
chr8.2 | CDS | 39125958 | 39126980 | 39125958 | ID=cds.MS.gene25358.t1;Parent=MS.gene25358.t1 |
chr8.2 | exon | 39124945 | 39125154 | 39124945 | ID=MS.gene25358.t1.exon2;Parent=MS.gene25358.t1 |
chr8.2 | CDS | 39124945 | 39125154 | 39124945 | ID=cds.MS.gene25358.t1;Parent=MS.gene25358.t1 |
chr8.2 | exon | 39124856 | 39124912 | 39124856 | ID=MS.gene25358.t1.exon3;Parent=MS.gene25358.t1 |
chr8.2 | CDS | 39124856 | 39124912 | 39124856 | ID=cds.MS.gene25358.t1;Parent=MS.gene25358.t1 |
chr8.2 | exon | 39124034 | 39124159 | 39124034 | ID=MS.gene25358.t1.exon4;Parent=MS.gene25358.t1 |
chr8.2 | CDS | 39124034 | 39124159 | 39124034 | ID=cds.MS.gene25358.t1;Parent=MS.gene25358.t1 |
chr8.2 | exon | 39123865 | 39123951 | 39123865 | ID=MS.gene25358.t1.exon5;Parent=MS.gene25358.t1 |
chr8.2 | CDS | 39123865 | 39123951 | 39123865 | ID=cds.MS.gene25358.t1;Parent=MS.gene25358.t1 |
Gene Sequence |
Protein sequence |