AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene25358


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene25358.t1 MTR_7g028855 70.990 293 50 3 8 299 5 263 1.63e-134 397
MS.gene25358.t1 MTR_7g446520 69.123 285 45 3 58 342 15 256 7.81e-129 378
MS.gene25358.t1 MTR_7g446480 52.959 338 69 8 5 342 2 249 5.10e-98 298
MS.gene25358.t1 MTR_7g446510 53.500 200 77 5 147 342 77 264 3.60e-55 188
MS.gene25358.t1 MTR_7g446510 61.062 113 36 3 346 452 48 158 1.54e-31 124
MS.gene25358.t1 MTR_1g070355 31.651 218 143 2 125 342 47 258 1.58e-28 119
MS.gene25358.t1 MTR_5g076070 30.464 151 105 0 168 318 65 215 3.05e-22 97.1
MS.gene25358.t1 MTR_6g022080 25.926 189 136 3 133 318 60 247 4.01e-17 81.3
MS.gene25358.t1 MTR_8g467420 43.836 73 41 0 139 211 61 133 9.53e-17 78.2
MS.gene25358.t1 MTR_0402s0040 32.524 206 109 9 158 352 28 214 2.00e-15 79.0
MS.gene25358.t1 MTR_3g448650 35.433 127 70 2 107 231 41 157 8.22e-15 73.2
MS.gene25358.t1 MTR_2g101460 30.769 169 105 2 107 273 14 172 2.12e-14 72.8
MS.gene25358.t1 MTR_6g053140 30.286 175 106 5 98 270 47 207 3.38e-14 72.0
MS.gene25358.t1 MTR_1g008290 30.882 136 89 2 216 351 10 140 7.20e-14 69.3
MS.gene25358.t1 MTR_0060s0090 38.462 78 48 0 161 238 61 138 1.36e-13 68.9
MS.gene25358.t1 MTR_2g101460 30.864 162 100 2 114 273 11 162 2.02e-13 69.7
MS.gene25358.t1 MTR_2g098880 36.752 117 71 3 150 264 55 170 7.17e-13 68.9
MS.gene25358.t1 MTR_2g098880 36.752 117 71 3 150 264 67 182 9.49e-13 68.9
MS.gene25358.t1 MTR_6g051425 26.425 193 138 3 166 355 27 218 2.48e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene25358.t1 AT4G38180 32.828 198 129 4 160 355 77 272 1.65e-16 83.2
MS.gene25358.t1 AT3G07500 37.719 114 67 3 151 263 28 138 4.09e-12 66.2

Find 84 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAAGAACTTGTCATATAA+TGG 0.240494 8.2:-39126092 MS.gene25358:CDS
TGCATTTACACCTTGTTTAT+CGG 0.260369 8.2:-39126165 MS.gene25358:CDS
TGTTCACTACAGACCCAAAA+AGG 0.266221 8.2:-39126251 MS.gene25358:CDS
TGTGCTTCTTTGGCTTGTTC+AGG 0.269948 8.2:+39124101 None:intergenic
ACTCTGTCATCTTTGTTAGA+TGG 0.289359 8.2:+39123869 None:intergenic
CGCAATATAATCAAATATTC+TGG 0.294303 8.2:+39124869 None:intergenic
AGTGATGATGGTGGTTGTTC+TGG 0.317361 8.2:-39126712 MS.gene25358:CDS
ATTAACTGCTGAAGGAATAA+TGG 0.327415 8.2:-39126506 MS.gene25358:CDS
CTGTTAAGAAGAGTGATATT+AGG 0.348071 8.2:-39126414 MS.gene25358:CDS
GTAGAACCGTAATCATATTT+CGG 0.389914 8.2:+39126910 None:intergenic
AGTCTCCTTGATGCCCTAAC+AGG 0.395341 8.2:+39124047 None:intergenic
ATAAGAACTTGTCATATAAT+GGG 0.396367 8.2:-39126091 MS.gene25358:CDS
TGCTGAAGGAATAATGGAAA+TGG 0.417359 8.2:-39126500 MS.gene25358:CDS
CGTGTGGTGAGGCACCTGTT+AGG 0.420139 8.2:-39124061 MS.gene25358:CDS
TGAGGCTGCTGAAATCTATA+CGG 0.433917 8.2:-39125136 MS.gene25358:intron
TGTAAATGCACAACACTAGA+TGG 0.434308 8.2:+39126178 None:intergenic
GGTTCACCGAAATATGATTA+CGG 0.436818 8.2:-39126916 MS.gene25358:CDS
GATTATAGTGTTGGTGATAA+AGG 0.444719 8.2:-39126688 MS.gene25358:CDS
TTTAAGTACTGTAAGTGTAA+AGG 0.451106 8.2:-39126442 MS.gene25358:CDS
GACGATAGTTCTGATGAAAC+TGG 0.457084 8.2:-39126745 MS.gene25358:CDS
AAGGGTGGATATCCTGGTGT+TGG 0.458467 8.2:-39126052 MS.gene25358:CDS
AAGCCAAAGAAGCACAGAAA+AGG 0.460028 8.2:-39124094 MS.gene25358:CDS
GCTCAGAAGGGTGGATATCC+TGG 0.461189 8.2:-39126058 MS.gene25358:CDS
AAACCTATCCGATGATTGTT+GGG 0.461967 8.2:-39126867 MS.gene25358:CDS
ATTGTTCATTGTCGTGACTT+TGG 0.463049 8.2:+39123925 None:intergenic
TAGTGAACACGAAGCCTAGC+TGG 0.465685 8.2:+39126265 None:intergenic
GCAGATAAAGCACAAATTGA+TGG 0.466709 8.2:-39126130 MS.gene25358:CDS
CACTAGATGGAGTAAGTTCA+TGG 0.468010 8.2:+39126191 None:intergenic
TGTTCTGGTGATTATAGTGT+TGG 0.469535 8.2:-39126697 MS.gene25358:CDS
GAGAGAAGAAGCATTTATCA+AGG 0.474767 8.2:-39126333 MS.gene25358:CDS
AGGGTGGATATCCTGGTGTT+GGG 0.476260 8.2:-39126051 MS.gene25358:CDS
AATAATGGAAATGGAATTTG+CGG 0.487093 8.2:-39126491 MS.gene25358:CDS
GGGATACATTGTGGCTCAGA+AGG 0.492920 8.2:-39126071 MS.gene25358:CDS
GAAACCTATCCGATGATTGT+TGG 0.493181 8.2:-39126868 MS.gene25358:CDS
AATGTAGATGATAGTTCTGA+TGG 0.493462 8.2:-39126811 MS.gene25358:CDS
GCAGTATGTATGCAACAAGC+AGG 0.502107 8.2:-39126362 MS.gene25358:CDS
TGTAGTTGTTGGTGAGGAAA+TGG 0.504666 8.2:-39126542 MS.gene25358:CDS
GAAGATGATGATGTAGTTGT+TGG 0.505754 8.2:-39126553 MS.gene25358:CDS
GTGAAAGAAGAGATTATGAA+AGG 0.507624 8.2:-39125096 MS.gene25358:CDS
ATAATGGAAATGGAATTTGC+GGG 0.512795 8.2:-39126490 MS.gene25358:CDS
CCGATGATTGTTGGGAGTCA+AGG 0.516932 8.2:-39126859 MS.gene25358:CDS
ATAAATTCATTAACTGCTGA+AGG 0.519495 8.2:-39126514 MS.gene25358:CDS
CCTTGACTCCCAACAATCAT+CGG 0.519588 8.2:+39126859 None:intergenic
AGCATTTATCAAGGTCAGAT+AGG 0.519899 8.2:-39126324 MS.gene25358:CDS
AATATTTGATTATATTGCGT+TGG 0.522218 8.2:-39124865 MS.gene25358:CDS
TAGGGCATCAAGGAGACTAA+TGG 0.526483 8.2:-39124042 MS.gene25358:CDS
GTGTGGTGAGGCACCTGTTA+GGG 0.531715 8.2:-39124060 MS.gene25358:CDS
CAGAATTCTCAAGCGAATGC+AGG 0.540569 8.2:-39126769 MS.gene25358:CDS
TTGACAAAATATATTGAGGA+AGG 0.543857 8.2:-39125018 MS.gene25358:CDS
TGATTACGGTTCTACGAATG+TGG 0.550987 8.2:-39126902 MS.gene25358:CDS
TGTTTATCGGCAAATATTCG+AGG 0.554010 8.2:-39126152 MS.gene25358:CDS
CGAATATTTGCCGATAAACA+AGG 0.558539 8.2:+39126155 None:intergenic
TGGCAGGATAAGAACATAGA+CGG 0.565361 8.2:-39124143 MS.gene25358:intron
TTCTTAGTGAACCCAACACC+AGG 0.567834 8.2:+39126040 None:intergenic
TTGTTGGTGAGGAAATGGTA+AGG 0.572827 8.2:-39126537 MS.gene25358:CDS
AGGCACCTGTTAGGGCATCA+AGG 0.577424 8.2:-39124052 MS.gene25358:CDS
ACTCCCAACAATCATCGGAT+AGG 0.580782 8.2:+39126864 None:intergenic
TACATTGTGGCTCAGAAGGG+TGG 0.583038 8.2:-39126067 MS.gene25358:CDS
CAGTATGTATGCAACAAGCA+GGG 0.584535 8.2:-39126361 MS.gene25358:CDS
GAAGTTGACAAAATATATTG+AGG 0.598462 8.2:-39125022 MS.gene25358:CDS
GGAGGCAATGAAAGTGATGA+TGG 0.602419 8.2:-39126724 MS.gene25358:CDS
TCATATAATGGGATACATTG+TGG 0.603031 8.2:-39126080 MS.gene25358:CDS
AGTGAAGGTCATGGTAGTGA+AGG 0.614950 8.2:-39126592 MS.gene25358:CDS
GGTGAAGATGATGAAAGTCA+AGG 0.619507 8.2:-39126667 MS.gene25358:CDS
GAAAGGTGTTGCAATGAGTG+TGG 0.626883 8.2:-39125079 MS.gene25358:CDS
CAAGAAATTTGAATCTCGAG+AGG 0.629020 8.2:-39124944 MS.gene25358:intron
AGTATGTATGCAACAAGCAG+GGG 0.634341 8.2:-39126360 MS.gene25358:CDS
ATGTAGATGATAGTTCTGAT+GGG 0.634382 8.2:-39126810 MS.gene25358:CDS
GGATACATTGTGGCTCAGAA+GGG 0.635876 8.2:-39126070 MS.gene25358:CDS
GATAGTTCTGATGGGAGTCG+TGG 0.635892 8.2:-39126802 MS.gene25358:CDS
CTCGTACAAAGTGTCCAGCT+AGG 0.644688 8.2:-39126279 MS.gene25358:CDS
GAAAAGAAGAACGTGTGGTG+AGG 0.652176 8.2:-39124072 MS.gene25358:CDS
GAAAGTGATGAAAGTGAAGG+TGG 0.661484 8.2:-39126634 MS.gene25358:CDS
TGATGATGTAGTTGTTGGTG+AGG 0.665725 8.2:-39126548 MS.gene25358:CDS
TTAACGATGAGATTGTAATG+AGG 0.666140 8.2:-39126384 MS.gene25358:CDS
GGTGATGAAAGTGAAGGTCA+TGG 0.667300 8.2:-39126601 MS.gene25358:CDS
AAAAGGAAAAGAAGAACGTG+TGG 0.672916 8.2:-39124077 MS.gene25358:CDS
AGTGAAGGTGGTGAAACTGA+AGG 0.681173 8.2:-39126622 MS.gene25358:CDS
GGATAAGAACATAGACGGCG+AGG 0.683636 8.2:-39124138 MS.gene25358:CDS
AGGTGTTGCAATGAGTGTGG+AGG 0.696599 8.2:-39125076 MS.gene25358:CDS
GGCAATGAAAGTGATGATGG+TGG 0.706532 8.2:-39126721 MS.gene25358:CDS
GATAGTTCTGATGAAACTGG+AGG 0.707194 8.2:-39126742 MS.gene25358:CDS
AGTGAAAGTGATGAAAGTGA+AGG 0.717258 8.2:-39126637 MS.gene25358:CDS
ACTGAAGGTGATGAAAGTGA+AGG 0.722369 8.2:-39126607 MS.gene25358:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACAATAGAAACTTATATG+TGG - chr8.2:39125125-39125144 MS.gene25358:CDS 20.0%
!! AAATTGAGAAGTTAATCAAA+AGG + chr8.2:39126659-39126678 None:intergenic 20.0%
!! AACAATAGAAACTTATATGT+GGG - chr8.2:39125126-39125145 MS.gene25358:CDS 20.0%
!! AATAAGAACTTGTCATATAA+TGG - chr8.2:39124731-39124750 MS.gene25358:intron 20.0%
!! AATATTTGATTATATTGCGT+TGG - chr8.2:39125958-39125977 MS.gene25358:CDS 20.0%
!! ATAAGAACTTGTCATATAAT+GGG - chr8.2:39124732-39124751 MS.gene25358:intron 20.0%
!! CCTTCAACAAAAAAAAATAT+GGG + chr8.2:39125914-39125933 None:intergenic 20.0%
!! CTTAAAAAACAACATATATG+AGG + chr8.2:39126848-39126867 None:intergenic 20.0%
!! TCCTTCAACAAAAAAAAATA+TGG + chr8.2:39125915-39125934 None:intergenic 20.0%
!!! AAAAAACAACAATGACTTTT+CGG - chr8.2:39123879-39123898 MS.gene25358:CDS 20.0%
!!! ACATGGATAATTTTTGATTT+AGG - chr8.2:39126872-39126891 MS.gene25358:CDS 20.0%
!!! ATTTCTGTATAATTTTGATG+AGG - chr8.2:39125570-39125589 MS.gene25358:intron 20.0%
!!! CTCATATATGTTGTTTTTTA+AGG - chr8.2:39126846-39126865 MS.gene25358:CDS 20.0%
!!! TTGATTAACTTCTCAATTTT+TGG - chr8.2:39126660-39126679 MS.gene25358:CDS 20.0%
! ATAAATTCATTAACTGCTGA+AGG - chr8.2:39124309-39124328 MS.gene25358:intron 25.0%
! ATATATGAGGTCAAGAATAT+GGG + chr8.2:39126835-39126854 None:intergenic 25.0%
! CCAACAATGTGTTTAAATAT+AGG - chr8.2:39126596-39126615 MS.gene25358:CDS 25.0%
! CCTATATTTAAACACATTGT+TGG + chr8.2:39126599-39126618 None:intergenic 25.0%
! CGCAATATAATCAAATATTC+TGG + chr8.2:39125957-39125976 None:intergenic 25.0%
! GAAGTTGACAAAATATATTG+AGG - chr8.2:39125801-39125820 MS.gene25358:intron 25.0%
! TTGACAAAATATATTGAGGA+AGG - chr8.2:39125805-39125824 MS.gene25358:intron 25.0%
! TTTCATACAATCTAGAAAAC+TGG + chr8.2:39125158-39125177 None:intergenic 25.0%
!! AAAAATGCGTGTTGTTATTA+AGG - chr8.2:39124830-39124849 MS.gene25358:intron 25.0%
!! AATAATGGAAATGGAATTTG+CGG - chr8.2:39124332-39124351 MS.gene25358:intron 25.0%
!! AGCAATGTACTCTAATTTTA+CGG - chr8.2:39125336-39125355 MS.gene25358:intron 25.0%
!! ATAACATATCTACCCTTTTT+GGG + chr8.2:39124588-39124607 None:intergenic 25.0%
!! TTTAAGTACTGTAAGTGTAA+AGG - chr8.2:39124381-39124400 MS.gene25358:intron 25.0%
!!! ACGTTTGAAATGTCTATTTT+GGG - chr8.2:39124944-39124963 MS.gene25358:intron 25.0%
!!! AGATCAGATTATTTCTGTTT+TGG - chr8.2:39124981-39125000 MS.gene25358:CDS 25.0%
!!! CCCATATTTTTTTTTGTTGA+AGG - chr8.2:39125911-39125930 MS.gene25358:intron 25.0%
!!! GTTGTTTTTTAAGGTTAACA+TGG - chr8.2:39126855-39126874 MS.gene25358:CDS 25.0%
!!! TGGATAATTTTTGATTTAGG+AGG - chr8.2:39126875-39126894 MS.gene25358:CDS 25.0%
!!! TGTTAACAATTCAGCTTTTT+TGG - chr8.2:39125300-39125319 MS.gene25358:intron 25.0%
!!! TTGTTGTTTTTTTTTCCATC+TGG + chr8.2:39123871-39123890 None:intergenic 25.0%
ATTAACTGCTGAAGGAATAA+TGG - chr8.2:39124317-39124336 MS.gene25358:intron 30.0%
CAAAAAAAAATATGGGAGCA+TGG + chr8.2:39125907-39125926 None:intergenic 30.0%
CAAATATAACTGTTTGTGAG+TGG + chr8.2:39125084-39125103 None:intergenic 30.0%
CACTCACAAACAGTTATATT+TGG - chr8.2:39125082-39125101 MS.gene25358:CDS 30.0%
CATATATGAGGTCAAGAATA+TGG + chr8.2:39126836-39126855 None:intergenic 30.0%
CTGTTAAGAAGAGTGATATT+AGG - chr8.2:39124409-39124428 MS.gene25358:intron 30.0%
GGTACTTACATTCATATTCA+CGG + chr8.2:39126578-39126597 None:intergenic 30.0%
GTAGAACCGTAATCATATTT+CGG + chr8.2:39123916-39123935 None:intergenic 30.0%
GTGAAAGAAGAGATTATGAA+AGG - chr8.2:39125727-39125746 MS.gene25358:intron 30.0%
TATATTGCGTTGGACAAAAA+AGG - chr8.2:39125968-39125987 MS.gene25358:CDS 30.0%
TTAACGATGAGATTGTAATG+AGG - chr8.2:39124439-39124458 MS.gene25358:intron 30.0%
TTGTAAGAATGTTCAAACTG+TGG - chr8.2:39126002-39126021 MS.gene25358:CDS 30.0%
! AACAATGACTTTTCGGATTT+TGG - chr8.2:39123886-39123905 MS.gene25358:CDS 30.0%
! AGAAGGAATTTGAAGAGTTT+TGG - chr8.2:39125359-39125378 MS.gene25358:intron 30.0%
! ATAATGGAAATGGAATTTGC+GGG - chr8.2:39124333-39124352 MS.gene25358:intron 30.0%
! CATAACATATCTACCCTTTT+TGG + chr8.2:39124589-39124608 None:intergenic 30.0%
! GAAGGAATTTGAAGAGTTTT+GGG - chr8.2:39125360-39125379 MS.gene25358:intron 30.0%
! TCATATAATGGGATACATTG+TGG - chr8.2:39124743-39124762 MS.gene25358:intron 30.0%
! TGCATTTACACCTTGTTTAT+CGG - chr8.2:39124658-39124677 MS.gene25358:intron 30.0%
!! AAGAGTTATGTTCTGAAGAA+AGG - chr8.2:39125535-39125554 MS.gene25358:intron 30.0%
!! AATGTAGATGATAGTTCTGA+TGG - chr8.2:39124012-39124031 MS.gene25358:intron 30.0%
!! ATGTAGATGATAGTTCTGAT+GGG - chr8.2:39124013-39124032 MS.gene25358:intron 30.0%
!! GACGTTTGAAATGTCTATTT+TGG - chr8.2:39124943-39124962 MS.gene25358:intron 30.0%
!! GATTATAGTGTTGGTGATAA+AGG - chr8.2:39124135-39124154 MS.gene25358:CDS 30.0%
!!! AACAATTCAGCTTTTTTGGA+TGG - chr8.2:39125304-39125323 MS.gene25358:intron 30.0%
!!! TTAACTTCTCAATTTTTGGC+AGG - chr8.2:39126664-39126683 MS.gene25358:CDS 30.0%
AAAAGGAAAAGAAGAACGTG+TGG - chr8.2:39126746-39126765 MS.gene25358:CDS 35.0%
AAACCTATCCGATGATTGTT+GGG - chr8.2:39123956-39123975 MS.gene25358:intron 35.0%
ACTCTGTCATCTTTGTTAGA+TGG + chr8.2:39126957-39126976 None:intergenic 35.0%
AGCATTTATCAAGGTCAGAT+AGG - chr8.2:39124499-39124518 MS.gene25358:intron 35.0%
AGTGAAAGTGATGAAAGTGA+AGG - chr8.2:39124186-39124205 MS.gene25358:intron 35.0%
AGTGGTAGAATATTGACAAG+AGG + chr8.2:39124916-39124935 None:intergenic 35.0%
ATAGGAGAACAAGGAATTGT+GGG - chr8.2:39125435-39125454 MS.gene25358:intron 35.0%
ATATAACTGTTTGTGAGTGG+TGG + chr8.2:39125081-39125100 None:intergenic 35.0%
ATTGTTCATTGTCGTGACTT+TGG + chr8.2:39126901-39126920 None:intergenic 35.0%
CAAGAAATTTGAATCTCGAG+AGG - chr8.2:39125879-39125898 MS.gene25358:intron 35.0%
CAATATTCTACCACTGATGA+TGG - chr8.2:39124921-39124940 MS.gene25358:intron 35.0%
CATGATAGCCAAAAAAATGC+GGG - chr8.2:39126092-39126111 MS.gene25358:CDS 35.0%
CGAATATTTGCCGATAAACA+AGG + chr8.2:39124671-39124690 None:intergenic 35.0%
GAACAAATACAACTATCCGT+TGG - chr8.2:39125037-39125056 MS.gene25358:CDS 35.0%
GAATATTGACAAGAGGAATG+TGG + chr8.2:39124909-39124928 None:intergenic 35.0%
GCAGATAAAGCACAAATTGA+TGG - chr8.2:39124693-39124712 MS.gene25358:intron 35.0%
GCATGATAGCCAAAAAAATG+CGG - chr8.2:39126091-39126110 MS.gene25358:CDS 35.0%
GGTTCACCGAAATATGATTA+CGG - chr8.2:39123907-39123926 MS.gene25358:CDS 35.0%
TACCAAAACATAGGAGAACA+AGG - chr8.2:39125426-39125445 MS.gene25358:intron 35.0%
TGTAAATGCACAACACTAGA+TGG + chr8.2:39124648-39124667 None:intergenic 35.0%
TGTTCTGGTGATTATAGTGT+TGG - chr8.2:39124126-39124145 MS.gene25358:CDS 35.0%
TGTTTATCGGCAAATATTCG+AGG - chr8.2:39124671-39124690 MS.gene25358:intron 35.0%
! GAAGATGATGATGTAGTTGT+TGG - chr8.2:39124270-39124289 MS.gene25358:intron 35.0%
! GTACTCTAATTTTACGGAGA+AGG - chr8.2:39125342-39125361 MS.gene25358:intron 35.0%
! TGCTGAAGGAATAATGGAAA+TGG - chr8.2:39124323-39124342 MS.gene25358:intron 35.0%
! TTCCTTGTTCTCCTATGTTT+TGG + chr8.2:39125431-39125450 None:intergenic 35.0%
! TTTCCTTTTCTGTGCTTCTT+TGG + chr8.2:39126735-39126754 None:intergenic 35.0%
!! AAATGTCTATTTTGGGCAGA+TGG - chr8.2:39124951-39124970 MS.gene25358:CDS 35.0%
!! AATTTTGATGAGGCAATGAG+AGG - chr8.2:39125580-39125599 MS.gene25358:intron 35.0%
!! AGTTATATTTGGTGCTGCAT+TGG - chr8.2:39125093-39125112 MS.gene25358:CDS 35.0%
!! GAGAGAAGAAGCATTTATCA+AGG - chr8.2:39124490-39124509 MS.gene25358:intron 35.0%
!!! TTATTTCTGTTTTGGCGATG+TGG - chr8.2:39124989-39125008 MS.gene25358:CDS 35.0%
AAAGGGATGTAGTTAAAGCG+AGG - chr8.2:39126531-39126550 MS.gene25358:CDS 40.0%
ACTGAAGGTGATGAAAGTGA+AGG - chr8.2:39124216-39124235 MS.gene25358:intron 40.0%
AGACGTGGTAGAAGGATTAA+AGG - chr8.2:39126513-39126532 MS.gene25358:CDS 40.0%
AGTATGTATGCAACAAGCAG+GGG - chr8.2:39124463-39124482 MS.gene25358:intron 40.0%
CAAAGGGAGGAAAATCAAAG+TGG - chr8.2:39126123-39126142 MS.gene25358:CDS 40.0%
CACTAGATGGAGTAAGTTCA+TGG + chr8.2:39124635-39124654 None:intergenic 40.0%
CAGTATGTATGCAACAAGCA+GGG - chr8.2:39124462-39124481 MS.gene25358:intron 40.0%
CATAGGAGAACAAGGAATTG+TGG - chr8.2:39125434-39125453 MS.gene25358:intron 40.0%
CATGCTAGCCAAAAAAACGT+GGG - chr8.2:39126397-39126416 MS.gene25358:CDS 40.0%
CCAAAAGCAGTTGTAACAGA+TGG - chr8.2:39125184-39125203 MS.gene25358:intron 40.0%
GAAACCTATCCGATGATTGT+TGG - chr8.2:39123955-39123974 MS.gene25358:intron 40.0%
GAAAGTGATGAAAGTGAAGG+TGG - chr8.2:39124189-39124208 MS.gene25358:intron 40.0%
GACGTGGTAGAAGGATTAAA+GGG - chr8.2:39126514-39126533 MS.gene25358:CDS 40.0%
GGTGAAGATGATGAAAGTCA+AGG - chr8.2:39124156-39124175 MS.gene25358:intron 40.0%
GTGGAGGAAAAAGAAGTGAA+GGG - chr8.2:39125763-39125782 MS.gene25358:intron 40.0%
GTTCACTACAGACCCAAAAA+GGG - chr8.2:39124573-39124592 MS.gene25358:intron 40.0%
TACCTGCGTGACAATTTCTT+TGG - chr8.2:39125466-39125485 MS.gene25358:intron 40.0%
TAGTTAAAGCGAGGTTGTCA+AGG - chr8.2:39126540-39126559 MS.gene25358:CDS 40.0%
TCATGCTAGCCAAAAAAACG+TGG - chr8.2:39126396-39126415 MS.gene25358:CDS 40.0%
TGAGGCTGCTGAAATCTATA+CGG - chr8.2:39125687-39125706 MS.gene25358:intron 40.0%
TGATTACGGTTCTACGAATG+TGG - chr8.2:39123921-39123940 MS.gene25358:CDS 40.0%
TGGCAGGATAAGAACATAGA+CGG - chr8.2:39126680-39126699 MS.gene25358:CDS 40.0%
TGGCTATCATGCTGAGATAT+GGG + chr8.2:39126083-39126102 None:intergenic 40.0%
TGTGGAGGAAAAAGAAGTGA+AGG - chr8.2:39125762-39125781 MS.gene25358:intron 40.0%
TGTTCACTACAGACCCAAAA+AGG - chr8.2:39124572-39124591 MS.gene25358:intron 40.0%
TTGGCTATCATGCTGAGATA+TGG + chr8.2:39126084-39126103 None:intergenic 40.0%
TTTCAAACGTCCATCATCAG+TGG + chr8.2:39124934-39124953 None:intergenic 40.0%
! AAGCCAAAGAAGCACAGAAA+AGG - chr8.2:39126729-39126748 MS.gene25358:CDS 40.0%
! AGTGCTTGCAGAACATTTTC+TGG + chr8.2:39126045-39126064 None:intergenic 40.0%
! ATCCTTCTACCACGTCTTTT+TGG + chr8.2:39126510-39126529 None:intergenic 40.0%
! ATCCTTCTGCCATGTCTTTT+TGG + chr8.2:39126205-39126224 None:intergenic 40.0%
! CCATCTGTTACAACTGCTTT+TGG + chr8.2:39125187-39125206 None:intergenic 40.0%
! TGATGATGTAGTTGTTGGTG+AGG - chr8.2:39124275-39124294 MS.gene25358:intron 40.0%
! TGTAGTTGTTGGTGAGGAAA+TGG - chr8.2:39124281-39124300 MS.gene25358:intron 40.0%
! TTGTTGGTGAGGAAATGGTA+AGG - chr8.2:39124286-39124305 MS.gene25358:intron 40.0%
!! GACGATAGTTCTGATGAAAC+TGG - chr8.2:39124078-39124097 MS.gene25358:CDS 40.0%
!! GATAGTTCTGATGAAACTGG+AGG - chr8.2:39124081-39124100 MS.gene25358:CDS 40.0%
!!! ATCCTTCTCCCACGTTTTTT+TGG + chr8.2:39126408-39126427 None:intergenic 40.0%
!!! ATCCTTCTCCCGCATTTTTT+TGG + chr8.2:39126103-39126122 None:intergenic 40.0%
!!! TCCTATGTTTTGGTAACCCA+GGG + chr8.2:39125421-39125440 None:intergenic 40.0%
AAATGCGGGAGAAGGATCAA+AGG - chr8.2:39126106-39126125 MS.gene25358:CDS 45.0%
AATGCGGGAGAAGGATCAAA+GGG - chr8.2:39126107-39126126 MS.gene25358:CDS 45.0%
ACTCCCAACAATCATCGGAT+AGG + chr8.2:39123962-39123981 None:intergenic 45.0%
AGAGGAATGTGGATCAGTTG+AGG + chr8.2:39124898-39124917 None:intergenic 45.0%
AGCCAAAAAAACGTGGGAGA+AGG - chr8.2:39126403-39126422 MS.gene25358:CDS 45.0%
AGCCAAAAAAATGCGGGAGA+AGG - chr8.2:39126098-39126117 MS.gene25358:CDS 45.0%
AGCCAAAAAGACATGGCAGA+AGG - chr8.2:39126200-39126219 MS.gene25358:CDS 45.0%
AGTGAAGGTGGTGAAACTGA+AGG - chr8.2:39124201-39124220 MS.gene25358:intron 45.0%
ATGGCAGAAGGATCAAAGAG+AGG - chr8.2:39126212-39126231 MS.gene25358:CDS 45.0%
CACCAAAGAAATTGTCACGC+AGG + chr8.2:39125471-39125490 None:intergenic 45.0%
CAGAATTCTCAAGCGAATGC+AGG - chr8.2:39124054-39124073 MS.gene25358:CDS 45.0%
CCTTGACTCCCAACAATCAT+CGG + chr8.2:39123967-39123986 None:intergenic 45.0%
CTGCGTGACAATTTCTTTGG+TGG - chr8.2:39125469-39125488 MS.gene25358:intron 45.0%
GAAAAGAAGAACGTGTGGTG+AGG - chr8.2:39126751-39126770 MS.gene25358:CDS 45.0%
GCAGCAGACAAAATCACCAA+CGG + chr8.2:39125056-39125075 None:intergenic 45.0%
GCAGTATGTATGCAACAAGC+AGG - chr8.2:39124461-39124480 MS.gene25358:intron 45.0%
GCAGTTGTAACAGATGGTGA+CGG - chr8.2:39125190-39125209 MS.gene25358:intron 45.0%
GGAGGCAATGAAAGTGATGA+TGG - chr8.2:39124099-39124118 MS.gene25358:CDS 45.0%
GGATACATTGTGGCTCAGAA+GGG - chr8.2:39124753-39124772 MS.gene25358:intron 45.0%
GGTGATGAAAGTGAAGGTCA+TGG - chr8.2:39124222-39124241 MS.gene25358:intron 45.0%
TAACCCAGGGATTGTTCTCA+AGG + chr8.2:39125408-39125427 None:intergenic 45.0%
TCCCTGGGTTACCAAAACAT+AGG - chr8.2:39125417-39125436 MS.gene25358:intron 45.0%
TCTGCATTGTCTTGAACGTG+AGG - chr8.2:39125669-39125688 MS.gene25358:intron 45.0%
TGCCAAAAAGACGTGGTAGA+AGG - chr8.2:39126505-39126524 MS.gene25358:CDS 45.0%
TTCTATGAGGGAGGCGATAA+AGG - chr8.2:39125213-39125232 MS.gene25358:intron 45.0%
TTCTTAGTGAACCCAACACC+AGG + chr8.2:39124786-39124805 None:intergenic 45.0%
TTGGCTAGCATGATGAGACA+TGG + chr8.2:39126389-39126408 None:intergenic 45.0%
! AGTGAAGGTCATGGTAGTGA+AGG - chr8.2:39124231-39124250 MS.gene25358:intron 45.0%
! ATCCTTTTCCCACGTCTTTC+TGG + chr8.2:39126306-39126325 None:intergenic 45.0%
! TAGGGCATCAAGGAGACTAA+TGG - chr8.2:39126781-39126800 MS.gene25358:CDS 45.0%
!! AGATGGTGACGGTTCTATGA+GGG - chr8.2:39125201-39125220 MS.gene25358:intron 45.0%
!! AGTGATGATGGTGGTTGTTC+TGG - chr8.2:39124111-39124130 MS.gene25358:CDS 45.0%
!! ATTTGGTGCTGCATTGGTGA+TGG - chr8.2:39125099-39125118 MS.gene25358:CDS 45.0%
!! GAAAGGTGTTGCAATGAGTG+TGG - chr8.2:39125744-39125763 MS.gene25358:intron 45.0%
!! GGCAATGAAAGTGATGATGG+TGG - chr8.2:39124102-39124121 MS.gene25358:CDS 45.0%
!! TGTGCTTCTTTGGCTTGTTC+AGG + chr8.2:39126725-39126744 None:intergenic 45.0%
!!! CTCCTATGTTTTGGTAACCC+AGG + chr8.2:39125422-39125441 None:intergenic 45.0%
!!! TGAAGAGTTTTGGGCTGACT+TGG - chr8.2:39125369-39125388 MS.gene25358:intron 45.0%
AAGGGTGGATATCCTGGTGT+TGG - chr8.2:39124771-39124790 MS.gene25358:intron 50.0%
AGCCAGAAAGACGTGGGAAA+AGG - chr8.2:39126301-39126320 MS.gene25358:CDS 50.0%
AGGGTGGATATCCTGGTGTT+GGG - chr8.2:39124772-39124791 MS.gene25358:intron 50.0%
AGTCTCCTTGATGCCCTAAC+AGG + chr8.2:39126779-39126798 None:intergenic 50.0%
CAAAGACGATGACGCGTACT+TGG + chr8.2:39125247-39125266 None:intergenic 50.0%
CAGATGAGTTGTCAGCACAG+GGG + chr8.2:39125653-39125672 None:intergenic 50.0%
CAGCACAGGGGATGAAAACT+TGG + chr8.2:39125641-39125660 None:intergenic 50.0%
CATGCTAGCCAGAAAGACGT+GGG - chr8.2:39126295-39126314 MS.gene25358:CDS 50.0%
CCGATGATTGTTGGGAGTCA+AGG - chr8.2:39123964-39123983 MS.gene25358:intron 50.0%
GAGTGCTTGCCAAAAAGACG+TGG - chr8.2:39126498-39126517 MS.gene25358:CDS 50.0%
GCAGATGAGTTGTCAGCACA+GGG + chr8.2:39125654-39125673 None:intergenic 50.0%
GCCTGCTAGCCAAAAAGACA+TGG - chr8.2:39126193-39126212 MS.gene25358:CDS 50.0%
GGATAAGAACATAGACGGCG+AGG - chr8.2:39126685-39126704 MS.gene25358:CDS 50.0%
GGGATACATTGTGGCTCAGA+AGG - chr8.2:39124752-39124771 MS.gene25358:intron 50.0%
TACATTGTGGCTCAGAAGGG+TGG - chr8.2:39124756-39124775 MS.gene25358:intron 50.0%
TAGTGAACACGAAGCCTAGC+TGG + chr8.2:39124561-39124580 None:intergenic 50.0%
TGCAGATGAGTTGTCAGCAC+AGG + chr8.2:39125655-39125674 None:intergenic 50.0%
TGGCTAGCAGGCTGAGATTT+GGG + chr8.2:39126185-39126204 None:intergenic 50.0%
TGGCTAGCATGCTGAGACAT+GGG + chr8.2:39126286-39126305 None:intergenic 50.0%
TTGGCTAGCAGGCTGAGATT+TGG + chr8.2:39126186-39126205 None:intergenic 50.0%
! AGGTGTTGCAATGAGTGTGG+AGG - chr8.2:39125747-39125766 MS.gene25358:intron 50.0%
! ATGGCCTTGAGAACAATCCC+TGG - chr8.2:39125401-39125420 MS.gene25358:intron 50.0%
! CTCGTACAAAGTGTCCAGCT+AGG - chr8.2:39124544-39124563 MS.gene25358:intron 50.0%
! TGGCCTTGAGAACAATCCCT+GGG - chr8.2:39125402-39125421 MS.gene25358:intron 50.0%
!! CAGATGGTGACGGTTCTATG+AGG - chr8.2:39125200-39125219 MS.gene25358:intron 50.0%
!! GATAGTTCTGATGGGAGTCG+TGG - chr8.2:39124021-39124040 MS.gene25358:intron 50.0%
!! GCTGACTTGGTGAGGGAAAA+TGG - chr8.2:39125382-39125401 MS.gene25358:intron 50.0%
!!! AGTTTTGGGCTGACTTGGTG+AGG - chr8.2:39125374-39125393 MS.gene25358:intron 50.0%
!!! GCCATGTCTTTTTGGCTAGC+AGG + chr8.2:39126197-39126216 None:intergenic 50.0%
!!! GTTTTGGGCTGACTTGGTGA+GGG - chr8.2:39125375-39125394 MS.gene25358:intron 50.0%
CGCGTCATCGTCTTTGTGCT+TGG - chr8.2:39125251-39125270 MS.gene25358:intron 55.0%
CTGGCTAGCATGCTGAGACA+TGG + chr8.2:39126287-39126306 None:intergenic 55.0%
GCATGCTAGCCAGAAAGACG+TGG - chr8.2:39126294-39126313 MS.gene25358:CDS 55.0%
GCTCAGAAGGGTGGATATCC+TGG - chr8.2:39124765-39124784 MS.gene25358:intron 55.0%
! AGGCACCTGTTAGGGCATCA+AGG - chr8.2:39126771-39126790 MS.gene25358:CDS 55.0%
! GTGTGGTGAGGCACCTGTTA+GGG - chr8.2:39126763-39126782 MS.gene25358:CDS 55.0%
!! TGGTGACGGTTCTATGAGGG+AGG - chr8.2:39125204-39125223 MS.gene25358:intron 55.0%
GCGGGAGAAGGATCAAAGGG+AGG - chr8.2:39126110-39126129 MS.gene25358:CDS 60.0%
! CGTGTGGTGAGGCACCTGTT+AGG - chr8.2:39126762-39126781 MS.gene25358:CDS 60.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 39123865 39126980 39123865 ID=MS.gene25358
chr8.2 mRNA 39123865 39126980 39123865 ID=MS.gene25358.t1;Parent=MS.gene25358
chr8.2 exon 39125958 39126980 39125958 ID=MS.gene25358.t1.exon1;Parent=MS.gene25358.t1
chr8.2 CDS 39125958 39126980 39125958 ID=cds.MS.gene25358.t1;Parent=MS.gene25358.t1
chr8.2 exon 39124945 39125154 39124945 ID=MS.gene25358.t1.exon2;Parent=MS.gene25358.t1
chr8.2 CDS 39124945 39125154 39124945 ID=cds.MS.gene25358.t1;Parent=MS.gene25358.t1
chr8.2 exon 39124856 39124912 39124856 ID=MS.gene25358.t1.exon3;Parent=MS.gene25358.t1
chr8.2 CDS 39124856 39124912 39124856 ID=cds.MS.gene25358.t1;Parent=MS.gene25358.t1
chr8.2 exon 39124034 39124159 39124034 ID=MS.gene25358.t1.exon4;Parent=MS.gene25358.t1
chr8.2 CDS 39124034 39124159 39124034 ID=cds.MS.gene25358.t1;Parent=MS.gene25358.t1
chr8.2 exon 39123865 39123951 39123865 ID=MS.gene25358.t1.exon5;Parent=MS.gene25358.t1
chr8.2 CDS 39123865 39123951 39123865 ID=cds.MS.gene25358.t1;Parent=MS.gene25358.t1
Gene Sequence

>MS.gene25358

ATGCCAGATGGAAAAAAAAACAACAATGACTTTTCGGATTTTGGTTCACCGAAATATGATTACGGTTCTACGAATGTGGATTTGAAAGACGAAACCTATCCGATGATTGTTGGGAGTCAAGGTAAATCTACTGAGAATGTTGAACAAAATGTAGATGATAGTTCTGATGGGAGTCGTGGTAGTTTTACTCAGAATTCTCAAGCGAATGCAGGTGACGATAGTTCTGATGAAACTGGAGGCAATGAAAGTGATGATGGTGGTTGTTCTGGTGATTATAGTGTTGGTGATAAAGGTGAAGATGATGAAAGTCAAGGTTATGAAAGTGAAAGTGATGAAAGTGAAGGTGGTGAAACTGAAGGTGATGAAAGTGAAGGTCATGGTAGTGAAGGTGATAAGAATTTAGATGAAGATGATGATGTAGTTGTTGGTGAGGAAATGGTAAGGATAAATTCATTAACTGCTGAAGGAATAATGGAAATGGAATTTGCGGGTATTGATGAAGCTTACGATTTTTATTTTAAGTACTGTAAGTGTAAAGGTTTTGCTGTTAAGAAGAGTGATATTAGGCGCAATGTTAACGATGAGATTGTAATGAGGCAGTATGTATGCAACAAGCAGGGGTTCAGAGAGAAGAAGCATTTATCAAGGTCAGATAGGCAAAGAGATCATCGACGTCTCACTCGTACAAAGTGTCCAGCTAGGCTTCGTGTTCACTACAGACCCAAAAAGGGTAGATATGTTATGTATATTTTTGAAGAGAGTCACAACCATGAACTTACTCCATCTAGTGTTGTGCATTTACACCTTGTTTATCGGCAAATATTCGAGGCAGATAAAGCACAAATTGATGGTCTTCAATTACACGAAATAAGAACTTGTCATATAATGGGATACATTGTGGCTCAGAAGGGTGGATATCCTGGTGTTGGGTTCACTAAGAAAGATTTGTACAATTACTTTGACAAAAAAATGCGTGTTGTTATTAAGGATAGTGATGTTTCAGCTGCTTTAAACTATCTGAATGTTATATCCTCAACTGATCCACATTCCTCTTGTCAATATTCTACCACTGATGATGGACGTTTGAAATGTCTATTTTGGGCAGATGGCACAAGTAGATCAGATTATTTCTGTTTTGGCGATGTGGTTGCATTTGACACAACGTACAACAAGAACAAATACAACTATCCGTTGGTGATTTTGTCTGCTGCAACCACCACTCACAAACAGTTATATTTGGTGCTGCATTGGTGATGGATGAAACAATAGAAACTTATATGTGGGTGTTGACCAGTTTTCTAGATTGTATGAAAAAACTTCCAAAAGCAGTTGTAACAGATGGTGACGGTTCTATGAGGGAGGCGATAAAGGCAGTTTTACCAAGTACGCGTCATCGTCTTTGTGCTTGGCATCTGAACAAGAATGTTGTTGACAATGTTAACAATTCAGCTTTTTTGGATGGTTTTAAAAAAGCAATGTACTCTAATTTTACGGAGAAGGAATTTGAAGAGTTTTGGGCTGACTTGGTGAGGGAAAATGGCCTTGAGAACAATCCCTGGGTTACCAAAACATAGGAGAACAAGGAATTGTGGGCAACTGCATACCTGCGTGACAATTTCTTTGGTGGTAGAAGAACTACGACTCAATGTGAGTCTGTTAATAAAATCATAAAGAGTTATGTTCTGAAGAAAGGAAGCATCTTTGAATTTCTGTATAATTTTGATGAGGCAATGAGAGGCTACATAAATAATAAACTTGTAGCTAATTTTAAATCCAAGTTTTCATCCCCTGTGCTGACAACTCATCTGCATTGTCTTGAACGTGAGGCTGCTGAAATCTATACGGCAAAGATCTTTCAAGAAGTGAAAGAAGAGATTATGAAAGGTGTTGCAATGAGTGTGGAGGAAAAAGAAGTGAAGGGTGACTTGAGAACAATGAAGTTGACAAAATATATTGAGGAAGGTGTTTATGAAATTTTATACGATGAGTCGATGTCAGCAATTCAGTGTTCGTGCAAGAAATTTGAATCTCGAGAGGTTCCATGCTCCCATATTTTTTTTTGTTGAAGGAAGAACGCGTTGAACACATTCCAGAATATTTGATTATATTGCGTTGGACAAAAAAGGTGAAGATTGATTTGTAAGAATGTTCAAACTGTGGCAGCACGCAACATGATGCCAGAAAATGTTCTGCAAGCACTGAACATCTTTCTGTACCCATATCTCAGCATGATAGCCAAAAAAATGCGGGAGAAGGATCAAAGGGAGGAAAATCAAAGTGGAAGACATGTTCTGCAAGCACTGAACATATTTTTGTGCCCAAATCTCAGCCTGCTAGCCAAAAAGACATGGCAGAAGGATCAAAGAGAGGAAATCAAAGAGAAAGAATATTTTTGCAAGCAATGAACATCTTTCTGTGCCCATGTCTCAGCATGCTAGCCAGAAAGACGTGGGAAAAGGATCAAAGAGAGTGAAATCAAAGAGAAAGAATTGTTCTGCAAGCAATGAACATCTTTCTGTGTCCATGTCTCATCATGCTAGCCAAAAAAACGTGGGAGAAGGATCAAAGAGAGTGAAATCAAAGAAAAAGACTTGTTCTGCAAGCAATCAACATATTTATGCGCTTATGTCTCAGAGTGCTTGCCAAAAAGACGTGGTAGAAGGATTAAAGGGATGTAGTTAAAGCGAGGTTGTCAAGGATTCACAAAGATCCGTGAATATGAATGTAAGTACCAACAATGTGTTTAAATATAGGAATGTAAATGACTTACTTACTGCACAATTAATGTTCACCTTTTGATTAACTTCTCAATTTTTGGCAGGATAAGAACATAGACGGCGAGGATTATGTGATGATTCCTGAACAAGCCAAAGAAGCACAGAAAAGGAAAAGAAGAACGTGTGGTGAGGCACCTGTTAGGGCATCAAGGAGACTAATGGCACTGAATGTAAGTTCAATCAAATTAATCCCATATTCTTGACCTCATATATGTTGTTTTTTAAGGTTAACATGGATAATTTTTGATTTAGGAGGCCAAAGTCACGACAATGAACAATGCTGAAGAAGATGATAGTGTGTCAGTAAATGATCCATCTAACAAAGATGACAGAGTATAA

Protein sequence

>MS.gene25358.t1

MPDGKKNNNDFSDFGSPKYDYGSTNVDLKDETYPMIVGSQGKSTENVEQNVDDSSDGSRGSFTQNSQANAGDDSSDETGGNESDDGGCSGDYSVGDKGEDDESQGYESESDESEGGETEGDESEGHGSEGDKNLDEDDDVVVGEEMVRINSLTAEGIMEMEFAGIDEAYDFYFKYCKCKGFAVKKSDIRRNVNDEIVMRQYVCNKQGFREKKHLSRSDRQRDHRRLTRTKCPARLRVHYRPKKGRYVMYIFEESHNHELTPSSVVHLHLVYRQIFEADKAQIDGLQLHEIRTCHIMGYIVAQKGGYPGVGFTKKDLYNYFDKKMRVVIKDSDVSAALNYLNAAEIYTAKIFQEVKEEIMKGVAMSVEEKEVKGDLRTMKLTKYIEEGVYEILYDESMSAIQCSCKKFESREEERVEHIPEYLIILRWTKKDKNIDGEDYVMIPEQAKEAQKRKRRTCGEAPVRASRRLMALNEAKVTTMNNAEEDDSVSVNDPSNKDDRV