Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25491.t1 | XP_013445707.1 | 100 | 120 | 0 | 0 | 1 | 120 | 1 | 120 | 1.60E-57 | 231.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25491.t1 | P40590 | 98.3 | 119 | 2 | 0 | 1 | 119 | 1 | 119 | 6.1e-58 | 224.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25491.t1 | B7FHA0 | 100.0 | 120 | 0 | 0 | 1 | 120 | 1 | 120 | 1.1e-57 | 231.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051746 | MS.gene25491 | 0.803746 | 3.01E-49 | -1.69E-46 |
| MS.gene051903 | MS.gene25491 | 0.82919 | 5.91E-55 | -1.69E-46 |
| MS.gene054937 | MS.gene25491 | 0.830486 | 2.86E-55 | -1.69E-46 |
| MS.gene057094 | MS.gene25491 | 0.825646 | 4.19E-54 | -1.69E-46 |
| MS.gene06001 | MS.gene25491 | 0.800979 | 1.12E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25491.t1 | MTR_8g467460 | 100.000 | 120 | 0 | 0 | 1 | 120 | 1 | 120 | 7.95e-83 | 238 |
| MS.gene25491.t1 | MTR_7g010150 | 99.160 | 119 | 1 | 0 | 1 | 119 | 1 | 119 | 2.73e-81 | 234 |
| MS.gene25491.t1 | MTR_5g040570 | 96.667 | 120 | 4 | 0 | 1 | 120 | 1 | 120 | 2.43e-79 | 229 |
| MS.gene25491.t1 | MTR_7g011050 | 63.717 | 113 | 25 | 1 | 1 | 113 | 1 | 97 | 8.15e-44 | 139 |
| MS.gene25491.t1 | MTR_8g019410 | 49.153 | 118 | 22 | 2 | 4 | 120 | 47 | 127 | 4.74e-22 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25491.t1 | AT1G26880 | 90.833 | 120 | 11 | 0 | 1 | 120 | 1 | 120 | 8.77e-75 | 218 |
| MS.gene25491.t1 | AT1G69620 | 91.597 | 119 | 10 | 0 | 1 | 119 | 1 | 119 | 3.17e-74 | 216 |
| MS.gene25491.t1 | AT3G28900 | 87.500 | 120 | 15 | 0 | 1 | 120 | 1 | 120 | 7.40e-72 | 210 |
| MS.gene25491.t1 | AT1G26880 | 91.304 | 92 | 8 | 0 | 1 | 92 | 1 | 92 | 9.47e-58 | 174 |
Find 35 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAATCCTCTTTCCAGTAAC+AGG | 0.237420 | 8.4:+43030819 | None:intergenic |
| TTCACAGTCCTCCTGTTTCT+AGG | 0.275401 | 8.4:+43028622 | None:intergenic |
| TAGAATCATCCGTGCTTTCT+TGG | 0.293017 | 8.4:-43028197 | MS.gene25491:CDS |
| GGACCAAAATGCCCTGTTAC+TGG | 0.307357 | 8.4:-43030831 | MS.gene25491:CDS |
| CCTATGTTGGTTGGATTTAG+TGG | 0.336981 | 8.4:+43031003 | None:intergenic |
| TTTCCAGTAACAGGGCATTT+TGG | 0.356509 | 8.4:+43030828 | None:intergenic |
| GATCTAGGTTACCTAGAAAC+AGG | 0.420037 | 8.4:-43028633 | MS.gene25491:CDS |
| AAAGGAAAAGCAAGCTTTGA+AGG | 0.441122 | 8.4:-43028128 | MS.gene25491:CDS |
| CTGGAGGTGCTGTTAGAGAA+AGG | 0.447721 | 8.4:-43028576 | MS.gene25491:intron |
| CCACTGAGTACAAGAGATCT+AGG | 0.456424 | 8.4:-43028648 | MS.gene25491:CDS |
| GTTACTGGAAAGAGGATTCA+AGG | 0.471253 | 8.4:-43030816 | MS.gene25491:CDS |
| CCACTAAATCCAACCAACAT+AGG | 0.484896 | 8.4:-43031003 | MS.gene25491:CDS |
| GTAGCTGTGGCGCCTGCGGT+AGG | 0.491000 | 8.4:+43031027 | None:intergenic |
| TTTGACAACCCTATGTTGGT+TGG | 0.518215 | 8.4:+43030994 | None:intergenic |
| CACTAAATCCAACCAACATA+GGG | 0.540710 | 8.4:-43031002 | MS.gene25491:CDS |
| TGGCGTAGCTGTGGCGCCTG+CGG | 0.541984 | 8.4:+43031023 | None:intergenic |
| AGAAGAAGAAAATGGTTCAG+AGG | 0.548716 | 8.4:-43031054 | None:intergenic |
| AGGACTGTGAATCGTGCCTA+TGG | 0.552813 | 8.4:-43028610 | MS.gene25491:CDS |
| TACTCAGTGGGTCTTAGATG+TGG | 0.563615 | 8.4:+43028661 | None:intergenic |
| AATGCCCTGTTACTGGAAAG+AGG | 0.571512 | 8.4:-43030824 | MS.gene25491:CDS |
| TTCAGAGGCTTACCTACCGC+AGG | 0.575371 | 8.4:-43031039 | MS.gene25491:CDS |
| ACAACTAAGAAGAGAGCTAG+TGG | 0.577057 | 8.4:-43030852 | MS.gene25491:CDS |
| CTAGATCTCTTGTACTCAGT+GGG | 0.583788 | 8.4:+43028649 | None:intergenic |
| AAGGAAAAGCAAGCTTTGAA+GGG | 0.585465 | 8.4:-43028127 | MS.gene25491:CDS |
| CATAGGGTTGTCAAAACACC+CGG | 0.588675 | 8.4:-43030986 | MS.gene25491:intron |
| GCTCTTCAACCAAGAAAGCA+CGG | 0.590956 | 8.4:+43028188 | None:intergenic |
| TTACTGGAAAGAGGATTCAA+GGG | 0.591954 | 8.4:-43030815 | MS.gene25491:CDS |
| TGGATTTAGTGGCGTAGCTG+TGG | 0.607976 | 8.4:+43031014 | None:intergenic |
| ACTGTGAATCGTGCCTATGG+TGG | 0.611220 | 8.4:-43028607 | MS.gene25491:CDS |
| CTTGAAGATCCAAAAGACAA+AGG | 0.616073 | 8.4:-43028146 | MS.gene25491:CDS |
| GAATCCTCTTTCCAGTAACA+GGG | 0.623856 | 8.4:+43030820 | None:intergenic |
| CCTAGATCTCTTGTACTCAG+TGG | 0.628511 | 8.4:+43028648 | None:intergenic |
| TCCAGATAAAACTCCACCAT+AGG | 0.634243 | 8.4:+43028594 | None:intergenic |
| TACTGGAAAGAGGATTCAAG+GGG | 0.671922 | 8.4:-43030814 | MS.gene25491:intron |
| CTAGGTTACCTAGAAACAGG+AGG | 0.687862 | 8.4:-43028630 | MS.gene25491:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGCAATAAAACTTAAAAA+GGG | + | chr8.4:43029418-43029437 | None:intergenic | 15.0% |
| !! | AATTACATTACATGTATTAT+AGG | - | chr8.4:43030056-43030075 | MS.gene25491:intron | 15.0% |
| !!! | TAATTTTTTATGTAACAATG+AGG | - | chr8.4:43029090-43029109 | MS.gene25491:intron | 15.0% |
| !! | AAATATTATTCTTGTGTGTT+TGG | + | chr8.4:43028961-43028980 | None:intergenic | 20.0% |
| !! | AGTTTATTGTAATAGTCTAA+GGG | - | chr8.4:43028695-43028714 | MS.gene25491:intron | 20.0% |
| !! | ATATAAGATCCCAAAAATTT+AGG | + | chr8.4:43029158-43029177 | None:intergenic | 20.0% |
| !! | CAAAGCAATAAAACTTAAAA+AGG | + | chr8.4:43029419-43029438 | None:intergenic | 20.0% |
| !! | TACAAGATATAAACCAAAAA+AGG | + | chr8.4:43030629-43030648 | None:intergenic | 20.0% |
| !! | TAGAAAAATAACAGTAAAAC+AGG | - | chr8.4:43029993-43030012 | MS.gene25491:intron | 20.0% |
| !! | TTATTTATCAAGGTTGTTAA+AGG | - | chr8.4:43029901-43029920 | MS.gene25491:intron | 20.0% |
| !! | TTGTATTTACAATAGTTGAT+AGG | + | chr8.4:43030775-43030794 | None:intergenic | 20.0% |
| !!! | ACAAAGTAAAAGTAATGTTT+TGG | - | chr8.4:43030791-43030810 | MS.gene25491:intron | 20.0% |
| !!! | ATGATGTTTCCTAAATTTTT+GGG | - | chr8.4:43029146-43029165 | MS.gene25491:intron | 20.0% |
| !!! | TACTTTCCTTTTCTAAATTA+CGG | + | chr8.4:43028904-43028923 | None:intergenic | 20.0% |
| !!! | TATGATGTTTCCTAAATTTT+TGG | - | chr8.4:43029145-43029164 | MS.gene25491:intron | 20.0% |
| !!! | TGTATTTACAATAGTTGATA+GGG | + | chr8.4:43030774-43030793 | None:intergenic | 20.0% |
| ! | AAATCCAATGATTAGAAGAA+AGG | - | chr8.4:43030725-43030744 | MS.gene25491:intron | 25.0% |
| ! | AACATAACATTACCCTTAAA+AGG | + | chr8.4:43029333-43029352 | None:intergenic | 25.0% |
| ! | AAGAAAAAGAAAACTAGTAC+TGG | - | chr8.4:43029562-43029581 | MS.gene25491:intron | 25.0% |
| ! | AATAAAACAATCACCAAGTT+AGG | + | chr8.4:43030335-43030354 | None:intergenic | 25.0% |
| ! | AATAAGTACTTGTCAAACTT+TGG | + | chr8.4:43030139-43030158 | None:intergenic | 25.0% |
| ! | AATACATTTAGTATAGTAGC+TGG | - | chr8.4:43028654-43028673 | MS.gene25491:CDS | 25.0% |
| ! | AATCCAATGATTAGAAGAAA+GGG | - | chr8.4:43030726-43030745 | MS.gene25491:intron | 25.0% |
| ! | ACATAACATTACCCTTAAAA+GGG | + | chr8.4:43029332-43029351 | None:intergenic | 25.0% |
| ! | AGACGTGATTAATATTTCAT+TGG | - | chr8.4:43030843-43030862 | MS.gene25491:CDS | 25.0% |
| ! | ATAAGTACTTGTCAAACTTT+GGG | + | chr8.4:43030138-43030157 | None:intergenic | 25.0% |
| ! | CAAAATACAATTTCAAAGAC+AGG | + | chr8.4:43029629-43029648 | None:intergenic | 25.0% |
| ! | CATAACAGAATTGAACTAAA+AGG | + | chr8.4:43029387-43029406 | None:intergenic | 25.0% |
| ! | GAGTTTATTGTAATAGTCTA+AGG | - | chr8.4:43028694-43028713 | MS.gene25491:intron | 25.0% |
| ! | GTTCAAAATGACATTTATTG+AGG | + | chr8.4:43029310-43029329 | None:intergenic | 25.0% |
| ! | TATTGTCCGTAATTTAGAAA+AGG | - | chr8.4:43028895-43028914 | MS.gene25491:intron | 25.0% |
| ! | TCGACTAGAATAATGAAATT+TGG | - | chr8.4:43029830-43029849 | MS.gene25491:intron | 25.0% |
| ! | TTTAACCTAATAACCTAACT+TGG | - | chr8.4:43030319-43030338 | MS.gene25491:intron | 25.0% |
| !! | TAGAACTAAACTTTTGAACA+AGG | + | chr8.4:43029196-43029215 | None:intergenic | 25.0% |
| !! | TTTTTATGTAACAATGAGGT+TGG | - | chr8.4:43029094-43029113 | MS.gene25491:intron | 25.0% |
| !!! | AAACGACATTCATTTTGAAA+TGG | + | chr8.4:43030684-43030703 | None:intergenic | 25.0% |
| !!! | AACCTCATTCTAAAACATAA+CGG | + | chr8.4:43028538-43028557 | None:intergenic | 25.0% |
| !!! | GTCTTTGAAATTGTATTTTG+TGG | - | chr8.4:43029629-43029648 | MS.gene25491:intron | 25.0% |
| !!! | TAATTTGATTTGTTGAATGC+AGG | - | chr8.4:43028272-43028291 | MS.gene25491:intron | 25.0% |
| !!! | TTTTGGAAGTAGTGTATATA+GGG | - | chr8.4:43030808-43030827 | MS.gene25491:intron | 25.0% |
| AACAGAATTGAACTAAAAGG+AGG | + | chr8.4:43029384-43029403 | None:intergenic | 30.0% | |
| AATCACCAAGTTAGGTTATT+AGG | + | chr8.4:43030327-43030346 | None:intergenic | 30.0% | |
| ATTCCCTTTCTTCTAATCAT+TGG | + | chr8.4:43030732-43030751 | None:intergenic | 30.0% | |
| ATTGGTGAAATACGTAACAA+TGG | - | chr8.4:43030433-43030452 | MS.gene25491:intron | 30.0% | |
| CGATTCATCTTACTAAAGAA+AGG | - | chr8.4:43029958-43029977 | MS.gene25491:intron | 30.0% | |
| GGTTATTAGGTTAAAAACAG+AGG | + | chr8.4:43030314-43030333 | None:intergenic | 30.0% | |
| GTTAAAAACAGAGGAGTTAA+AGG | + | chr8.4:43030305-43030324 | None:intergenic | 30.0% | |
| TATACCGCTATAGTATGTTA+GGG | - | chr8.4:43029504-43029523 | MS.gene25491:intron | 30.0% | |
| TGTCAACACTTTATTATAGC+TGG | - | chr8.4:43029711-43029730 | MS.gene25491:intron | 30.0% | |
| TTTATGCTTACTTTGTACAC+TGG | - | chr8.4:43029443-43029462 | MS.gene25491:intron | 30.0% | |
| TTTGGAAGTAGTGTATATAG+GGG | - | chr8.4:43030809-43030828 | MS.gene25491:intron | 30.0% | |
| ! | AAAACTAGTACTGGATGTAA+TGG | - | chr8.4:43029571-43029590 | MS.gene25491:intron | 30.0% |
| ! | AACTAAACTTTTGAACAAGG+CGG | + | chr8.4:43029193-43029212 | None:intergenic | 30.0% |
| ! | ATTTATGTGATTAGAGTGTC+TGG | + | chr8.4:43029789-43029808 | None:intergenic | 30.0% |
| ! | TTGCTATGTCATTTGTATGT+TGG | - | chr8.4:43029743-43029762 | MS.gene25491:intron | 30.0% |
| !! | AAGTGACACTCTTTTTGAAA+CGG | - | chr8.4:43030873-43030892 | MS.gene25491:CDS | 30.0% |
| !! | AATAGTTGATAGGGATGATT+TGG | + | chr8.4:43030765-43030784 | None:intergenic | 30.0% |
| !! | GGCGTGTTTTTAATAGTAAT+TGG | - | chr8.4:43030415-43030434 | MS.gene25491:intron | 30.0% |
| !! | GTCATTTTGAACCCTTTTAA+GGG | - | chr8.4:43029318-43029337 | MS.gene25491:intron | 30.0% |
| !! | TTATTGCTTTTGCATTACTC+AGG | - | chr8.4:43030394-43030413 | MS.gene25491:intron | 30.0% |
| !!! | GACATTCATTTTGAAATGGA+GGG | + | chr8.4:43030680-43030699 | None:intergenic | 30.0% |
| !!! | GTTTTGGAAGTAGTGTATAT+AGG | - | chr8.4:43030807-43030826 | MS.gene25491:intron | 30.0% |
| !!! | GTTTTTAGTCATTGCAATAG+TGG | - | chr8.4:43029465-43029484 | MS.gene25491:intron | 30.0% |
| !!! | TGTCATTTTGAACCCTTTTA+AGG | - | chr8.4:43029317-43029336 | MS.gene25491:intron | 30.0% |
| AACATACTATAGCGGTATAG+CGG | + | chr8.4:43029503-43029522 | None:intergenic | 35.0% | |
| AATCAAACCAACTACTTAGC+TGG | + | chr8.4:43029006-43029025 | None:intergenic | 35.0% | |
| ATACCGCTATAGTATGTTAG+GGG | - | chr8.4:43029505-43029524 | MS.gene25491:intron | 35.0% | |
| ATGCATGAAGGACTTATACA+AGG | + | chr8.4:43030271-43030290 | None:intergenic | 35.0% | |
| CACTAAATCCAACCAACATA+GGG | - | chr8.4:43028164-43028183 | MS.gene25491:CDS | 35.0% | |
| CTATACCGCTATAGTATGTT+AGG | - | chr8.4:43029503-43029522 | MS.gene25491:intron | 35.0% | |
| CTTGAAGATCCAAAAGACAA+AGG | - | chr8.4:43031020-43031039 | MS.gene25491:CDS | 35.0% | |
| GAAATATCCAGCTAAGTAGT+TGG | - | chr8.4:43028996-43029015 | MS.gene25491:intron | 35.0% | |
| GTAATATGACGAGTTCTCAT+TGG | - | chr8.4:43028575-43028594 | MS.gene25491:intron | 35.0% | |
| TAACAATGGTTTGAGTCATG+AGG | - | chr8.4:43030447-43030466 | MS.gene25491:intron | 35.0% | |
| TATCTCACTTTACCCAGAAA+AGG | - | chr8.4:43030223-43030242 | MS.gene25491:intron | 35.0% | |
| TTACTGGAAAGAGGATTCAA+GGG | - | chr8.4:43028351-43028370 | MS.gene25491:intron | 35.0% | |
| TTTGGATTGAGGGTTTAAGA+GGG | - | chr8.4:43028722-43028741 | MS.gene25491:intron | 35.0% | |
| ! | AAAGGAAAAGCAAGCTTTGA+AGG | - | chr8.4:43031038-43031057 | MS.gene25491:CDS | 35.0% |
| ! | AGTGTATATAGGGGTACAAT+TGG | - | chr8.4:43030818-43030837 | MS.gene25491:CDS | 35.0% |
| ! | GAAATTGTATTTTGTGGAGC+TGG | - | chr8.4:43029635-43029654 | MS.gene25491:intron | 35.0% |
| ! | TAATAGTCTAAGGGTGTGTT+TGG | - | chr8.4:43028704-43028723 | MS.gene25491:intron | 35.0% |
| ! | TACGCCACATTGATACTTTT+GGG | - | chr8.4:43030365-43030384 | MS.gene25491:intron | 35.0% |
| ! | TTACGCCACATTGATACTTT+TGG | - | chr8.4:43030364-43030383 | MS.gene25491:intron | 35.0% |
| !! | AAGGAAAAGCAAGCTTTGAA+GGG | - | chr8.4:43031039-43031058 | MS.gene25491:CDS | 35.0% |
| !! | CTTGCTTTTCCTTTGTCTTT+TGG | + | chr8.4:43031032-43031051 | None:intergenic | 35.0% |
| !! | TTTGATTTGTTGAATGCAGG+TGG | - | chr8.4:43028275-43028294 | MS.gene25491:intron | 35.0% |
| !!! | CGACATTCATTTTGAAATGG+AGG | + | chr8.4:43030681-43030700 | None:intergenic | 35.0% |
| !!! | TGCCGTTATGTTTTAGAATG+AGG | - | chr8.4:43028533-43028552 | MS.gene25491:intron | 35.0% |
| !!! | TTTGTTCTGCTTGCCTTTTT+TGG | - | chr8.4:43030613-43030632 | MS.gene25491:intron | 35.0% |
| ACAACTAAGAAGAGAGCTAG+TGG | - | chr8.4:43028314-43028333 | MS.gene25491:intron | 40.0% | |
| ACTTATACAAGGCAACCACA+AGG | + | chr8.4:43030260-43030279 | None:intergenic | 40.0% | |
| ATTCTTGTGTGTTTGGATCG+AGG | + | chr8.4:43028954-43028973 | None:intergenic | 40.0% | |
| CAACAAAGTGAAGAGAAGAG+AGG | + | chr8.4:43028213-43028232 | None:intergenic | 40.0% | |
| CCACTAAATCCAACCAACAT+AGG | - | chr8.4:43028163-43028182 | MS.gene25491:CDS | 40.0% | |
| CTAGATCTCTTGTACTCAGT+GGG | + | chr8.4:43030520-43030539 | None:intergenic | 40.0% | |
| CTCTTAACATCAAGCAGCTT+AGG | + | chr8.4:43030114-43030133 | None:intergenic | 40.0% | |
| CTTATACAAGGCAACCACAA+GGG | + | chr8.4:43030259-43030278 | None:intergenic | 40.0% | |
| GAATCCTCTTTCCAGTAACA+GGG | + | chr8.4:43028349-43028368 | None:intergenic | 40.0% | |
| GACGAGTTCTCATTGGATTT+CGG | - | chr8.4:43028582-43028601 | MS.gene25491:CDS | 40.0% | |
| GATCTAGGTTACCTAGAAAC+AGG | - | chr8.4:43030533-43030552 | MS.gene25491:intron | 40.0% | |
| GTTAATTGCGGCGAAATTGT+GGG | - | chr8.4:43029239-43029258 | MS.gene25491:intron | 40.0% | |
| GTTACTGGAAAGAGGATTCA+AGG | - | chr8.4:43028350-43028369 | MS.gene25491:intron | 40.0% | |
| GTTTGGATTGAGGGTTTAAG+AGG | - | chr8.4:43028721-43028740 | MS.gene25491:intron | 40.0% | |
| TACCGCTATAGTATGTTAGG+GGG | - | chr8.4:43029506-43029525 | MS.gene25491:intron | 40.0% | |
| TACTGGAAAGAGGATTCAAG+GGG | - | chr8.4:43028352-43028371 | MS.gene25491:intron | 40.0% | |
| TAGAATCATCCGTGCTTTCT+TGG | - | chr8.4:43030969-43030988 | MS.gene25491:intron | 40.0% | |
| TCCAGATAAAACTCCACCAT+AGG | + | chr8.4:43030575-43030594 | None:intergenic | 40.0% | |
| TGAATCCTCTTTCCAGTAAC+AGG | + | chr8.4:43028350-43028369 | None:intergenic | 40.0% | |
| TGTTAGCAATTGTCACCTCA+AGG | + | chr8.4:43029937-43029956 | None:intergenic | 40.0% | |
| TGTTCGAAGATATGCTCTGA+TGG | - | chr8.4:43028458-43028477 | MS.gene25491:intron | 40.0% | |
| TTCTTGTGTGTTTGGATCGA+GGG | + | chr8.4:43028953-43028972 | None:intergenic | 40.0% | |
| TTGGATTGAGGGTTTAAGAG+GGG | - | chr8.4:43028723-43028742 | MS.gene25491:intron | 40.0% | |
| TTTGACAACCCTATGTTGGT+TGG | + | chr8.4:43028175-43028194 | None:intergenic | 40.0% | |
| ! | ACTAGTACTGGATGTAATGG+TGG | - | chr8.4:43029574-43029593 | MS.gene25491:intron | 40.0% |
| ! | AGAGAAGAGAGGTTAGTTAC+CGG | + | chr8.4:43028202-43028221 | None:intergenic | 40.0% |
| ! | CCTATGTTGGTTGGATTTAG+TGG | + | chr8.4:43028166-43028185 | None:intergenic | 40.0% |
| ! | TAAGGGTGTGTTTGGATTGA+GGG | - | chr8.4:43028712-43028731 | MS.gene25491:intron | 40.0% |
| ! | TTGTTGTCGTTTACTAAGCG+AGG | - | chr8.4:43028227-43028246 | MS.gene25491:intron | 40.0% |
| !! | AGGTTCGAAGTGTTGTTATG+TGG | - | chr8.4:43028553-43028572 | MS.gene25491:intron | 40.0% |
| !! | AGTGCCCAAAAGTATCAATG+TGG | + | chr8.4:43030372-43030391 | None:intergenic | 40.0% |
| !! | ATGTAATGGTGGACTGTAGA+TGG | - | chr8.4:43029585-43029604 | MS.gene25491:intron | 40.0% |
| !! | GAGGAGTTAAAGGCACTAAA+AGG | + | chr8.4:43030295-43030314 | None:intergenic | 40.0% |
| !! | TATGGTGGAGTTTTATCTGG+AGG | - | chr8.4:43030574-43030593 | MS.gene25491:intron | 40.0% |
| !! | TTTCCAGTAACAGGGCATTT+TGG | + | chr8.4:43028341-43028360 | None:intergenic | 40.0% |
| !!! | CGGTCTGCAACATCTTTTTT+TGG | - | chr8.4:43029666-43029685 | MS.gene25491:intron | 40.0% |
| !!! | GACACTCTTTTTGAAACGGA+GGG | - | chr8.4:43030877-43030896 | MS.gene25491:intron | 40.0% |
| !!! | GTGTTTTGACAACCCTATGT+TGG | + | chr8.4:43028179-43028198 | None:intergenic | 40.0% |
| !!! | TGACACTCTTTTTGAAACGG+AGG | - | chr8.4:43030876-43030895 | MS.gene25491:intron | 40.0% |
| AAGAGGGGAATGGAATGGAA+GGG | - | chr8.4:43028738-43028757 | MS.gene25491:intron | 45.0% | |
| AATGCCCTGTTACTGGAAAG+AGG | - | chr8.4:43028342-43028361 | MS.gene25491:intron | 45.0% | |
| ACTGCTACGCGACACTATTT+GGG | - | chr8.4:43029531-43029550 | MS.gene25491:intron | 45.0% | |
| CATAGGGTTGTCAAAACACC+CGG | - | chr8.4:43028180-43028199 | MS.gene25491:CDS | 45.0% | |
| CATCCACTATTAGGGTTTCG+GGG | - | chr8.4:43029277-43029296 | MS.gene25491:intron | 45.0% | |
| CCACTGAGTACAAGAGATCT+AGG | - | chr8.4:43030518-43030537 | MS.gene25491:intron | 45.0% | |
| CCTAGATCTCTTGTACTCAG+TGG | + | chr8.4:43030521-43030540 | None:intergenic | 45.0% | |
| CGCTATGGCATCCACTATTA+GGG | - | chr8.4:43029269-43029288 | MS.gene25491:intron | 45.0% | |
| CGTTAATTGCGGCGAAATTG+TGG | - | chr8.4:43029238-43029257 | MS.gene25491:intron | 45.0% | |
| CTAGGTTACCTAGAAACAGG+AGG | - | chr8.4:43030536-43030555 | MS.gene25491:intron | 45.0% | |
| GACAAGCCATCTAACTTGAC+TGG | + | chr8.4:43030195-43030214 | None:intergenic | 45.0% | |
| GACCCCCTAACATACTATAG+CGG | + | chr8.4:43029511-43029530 | None:intergenic | 45.0% | |
| GCATCCACTATTAGGGTTTC+GGG | - | chr8.4:43029276-43029295 | MS.gene25491:intron | 45.0% | |
| GCCATCTAACTTGACTGGTA+CGG | + | chr8.4:43030190-43030209 | None:intergenic | 45.0% | |
| GCTCTTCAACCAAGAAAGCA+CGG | + | chr8.4:43030981-43031000 | None:intergenic | 45.0% | |
| GGCATCCACTATTAGGGTTT+CGG | - | chr8.4:43029275-43029294 | MS.gene25491:intron | 45.0% | |
| GGTTTAAGAGGGGAATGGAA+TGG | - | chr8.4:43028733-43028752 | MS.gene25491:intron | 45.0% | |
| GTGTTTGGATCGAGGGTTTA+GGG | + | chr8.4:43028946-43028965 | None:intergenic | 45.0% | |
| TAAGAGGGGAATGGAATGGA+AGG | - | chr8.4:43028737-43028756 | MS.gene25491:intron | 45.0% | |
| TACTCAGTGGGTCTTAGATG+TGG | + | chr8.4:43030508-43030527 | None:intergenic | 45.0% | |
| TCCGTACCAGTCAAGTTAGA+TGG | - | chr8.4:43030186-43030205 | MS.gene25491:intron | 45.0% | |
| TGTGTTTGGATCGAGGGTTT+AGG | + | chr8.4:43028947-43028966 | None:intergenic | 45.0% | |
| TGTTTGGATCGAGGGTTTAG+GGG | + | chr8.4:43028945-43028964 | None:intergenic | 45.0% | |
| TTGAGGGTTTAAGAGGGGAA+TGG | - | chr8.4:43028728-43028747 | MS.gene25491:intron | 45.0% | |
| TTGTGGAGCTGGTACAGAAT+CGG | - | chr8.4:43029646-43029665 | MS.gene25491:intron | 45.0% | |
| TTTGGTTGCATCGTCTCTGT+AGG | - | chr8.4:43029848-43029867 | MS.gene25491:intron | 45.0% | |
| ! | CTAAGGGTGTGTTTGGATTG+AGG | - | chr8.4:43028711-43028730 | MS.gene25491:intron | 45.0% |
| ! | GAGAAGAGAGGTTAGTTACC+GGG | + | chr8.4:43028201-43028220 | None:intergenic | 45.0% |
| ! | GCACTAAAAGGCATGCATGA+AGG | + | chr8.4:43030283-43030302 | None:intergenic | 45.0% |
| ! | GGATTAGGACTGCCTTTTCT+GGG | + | chr8.4:43030238-43030257 | None:intergenic | 45.0% |
| ! | TTCACAGTCCTCCTGTTTCT+AGG | + | chr8.4:43030547-43030566 | None:intergenic | 45.0% |
| !! | ATAGCGGTATAGCGGATAGA+GGG | + | chr8.4:43029495-43029514 | None:intergenic | 45.0% |
| !! | CCTAATAGTGGATGCCATAG+CGG | + | chr8.4:43029271-43029290 | None:intergenic | 45.0% |
| !! | GCCTATGGTGGAGTTTTATC+TGG | - | chr8.4:43030571-43030590 | MS.gene25491:intron | 45.0% |
| !! | TATAGCGGTATAGCGGATAG+AGG | + | chr8.4:43029496-43029515 | None:intergenic | 45.0% |
| !!! | AAAGGTTTTGCCTAGCCTTG+AGG | - | chr8.4:43029919-43029938 | MS.gene25491:intron | 45.0% |
| !! | ATATATTTATTTATTTATCA+AGG | - | chr8.4:43029891-43029910 | MS.gene25491:intron | 5.0% |
| AAGGCAGTCCTAATCCCTTG+TGG | - | chr8.4:43030242-43030261 | MS.gene25491:intron | 50.0% | |
| ACTGTGAATCGTGCCTATGG+TGG | - | chr8.4:43030559-43030578 | MS.gene25491:intron | 50.0% | |
| AGGACTGTGAATCGTGCCTA+TGG | - | chr8.4:43030556-43030575 | MS.gene25491:intron | 50.0% | |
| ATTGTGGGACCAAACCGCTA+TGG | - | chr8.4:43029254-43029273 | MS.gene25491:intron | 50.0% | |
| CAAGGCAACCACAAGGGATT+AGG | + | chr8.4:43030253-43030272 | None:intergenic | 50.0% | |
| CACTGCTACGCGACACTATT+TGG | - | chr8.4:43029530-43029549 | MS.gene25491:intron | 50.0% | |
| CCGCTATGGCATCCACTATT+AGG | - | chr8.4:43029268-43029287 | MS.gene25491:intron | 50.0% | |
| GCAATTGTCACCTCAAGGCT+AGG | + | chr8.4:43029932-43029951 | None:intergenic | 50.0% | |
| GCGCACTGTTGCGTTAATTG+CGG | - | chr8.4:43029227-43029246 | MS.gene25491:intron | 50.0% | |
| GGACCAAAATGCCCTGTTAC+TGG | - | chr8.4:43028335-43028354 | MS.gene25491:intron | 50.0% | |
| GTTTGGATCGAGGGTTTAGG+GGG | + | chr8.4:43028944-43028963 | None:intergenic | 50.0% | |
| TCTCCCCGAAACCCTAATAG+TGG | + | chr8.4:43029283-43029302 | None:intergenic | 50.0% | |
| TGGATTTAGTGGCGTAGCTG+TGG | + | chr8.4:43028155-43028174 | None:intergenic | 50.0% | |
| TTTGGATCGAGGGTTTAGGG+GGG | + | chr8.4:43028943-43028962 | None:intergenic | 50.0% | |
| ! | GGGATTAGGACTGCCTTTTC+TGG | + | chr8.4:43030239-43030258 | None:intergenic | 50.0% |
| ! | TAGTAGCTGGTCGAGTTGTG+TGG | - | chr8.4:43028667-43028686 | MS.gene25491:CDS | 50.0% |
| ! | TAGTGGATGCCATAGCGGTT+TGG | + | chr8.4:43029266-43029285 | None:intergenic | 50.0% |
| !! | CTGGAGGTGCTGTTAGAGAA+AGG | - | chr8.4:43030590-43030609 | MS.gene25491:intron | 50.0% |
| AGGGTTTAGGGGGGAATGGA+GGG | + | chr8.4:43028934-43028953 | None:intergenic | 55.0% | |
| ATCGAGGGTTTAGGGGGGAA+TGG | + | chr8.4:43028938-43028957 | None:intergenic | 55.0% | |
| TTCAGAGGCTTACCTACCGC+AGG | - | chr8.4:43028127-43028146 | MS.gene25491:CDS | 55.0% | |
| GAGGGTTTAGGGGGGAATGG+AGG | + | chr8.4:43028935-43028954 | None:intergenic | 60.0% | |
| GGGTTTAGGGGGGAATGGAG+GGG | + | chr8.4:43028933-43028952 | None:intergenic | 60.0% | |
| TTAGGGGGGAATGGAGGGGA+GGG | + | chr8.4:43028929-43028948 | None:intergenic | 60.0% | |
| TTTAGGGGGGAATGGAGGGG+AGG | + | chr8.4:43028930-43028949 | None:intergenic | 60.0% | |
| GTAGCTGTGGCGCCTGCGGT+AGG | + | chr8.4:43028142-43028161 | None:intergenic | 70.0% | |
| TGGCGTAGCTGTGGCGCCTG+CGG | + | chr8.4:43028146-43028165 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 43028123 | 43031065 | 43028123 | ID=MS.gene25491 |
| chr8.4 | mRNA | 43028123 | 43031065 | 43028123 | ID=MS.gene25491.t1;Parent=MS.gene25491 |
| chr8.4 | exon | 43030987 | 43031065 | 43030987 | ID=MS.gene25491.t1.exon1;Parent=MS.gene25491.t1 |
| chr8.4 | CDS | 43030987 | 43031065 | 43030987 | ID=cds.MS.gene25491.t1;Parent=MS.gene25491.t1 |
| chr8.4 | exon | 43030815 | 43030894 | 43030815 | ID=MS.gene25491.t1.exon2;Parent=MS.gene25491.t1 |
| chr8.4 | CDS | 43030815 | 43030894 | 43030815 | ID=cds.MS.gene25491.t1;Parent=MS.gene25491.t1 |
| chr8.4 | exon | 43028577 | 43028686 | 43028577 | ID=MS.gene25491.t1.exon3;Parent=MS.gene25491.t1 |
| chr8.4 | CDS | 43028577 | 43028686 | 43028577 | ID=cds.MS.gene25491.t1;Parent=MS.gene25491.t1 |
| chr8.4 | exon | 43028123 | 43028216 | 43028123 | ID=MS.gene25491.t1.exon4;Parent=MS.gene25491.t1 |
| chr8.4 | CDS | 43028123 | 43028216 | 43028123 | ID=cds.MS.gene25491.t1;Parent=MS.gene25491.t1 |
| Gene Sequence |
| Protein sequence |
