Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25911.t1 | XP_013461059.1 | 92.5 | 201 | 15 | 0 | 1 | 201 | 1 | 201 | 2.10E-94 | 355.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25911.t1 | Q7G8V2 | 69.2 | 169 | 45 | 3 | 8 | 172 | 3 | 168 | 1.2e-53 | 211.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25911.t1 | A0A072V140 | 92.5 | 201 | 15 | 0 | 1 | 201 | 1 | 201 | 1.5e-94 | 355.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene25911.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene065402 | MS.gene25911 | PPI |
| MS.gene029745 | MS.gene25911 | PPI |
| MS.gene47429 | MS.gene25911 | PPI |
| MS.gene065401 | MS.gene25911 | PPI |
| MS.gene25911 | MS.gene051416 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25911.t1 | MTR_3g078613 | 97.015 | 201 | 6 | 0 | 1 | 201 | 1 | 201 | 1.17e-139 | 388 |
| MS.gene25911.t1 | MTR_3g078613 | 96.517 | 201 | 6 | 1 | 1 | 201 | 1 | 200 | 7.08e-137 | 381 |
| MS.gene25911.t1 | MTR_4g106590 | 68.519 | 216 | 52 | 5 | 1 | 201 | 1 | 215 | 1.23e-88 | 259 |
| MS.gene25911.t1 | MTR_1g049100 | 61.039 | 154 | 54 | 3 | 22 | 173 | 7 | 156 | 1.02e-56 | 178 |
| MS.gene25911.t1 | MTR_5g036480 | 64.336 | 143 | 46 | 2 | 17 | 155 | 10 | 151 | 4.72e-56 | 177 |
| MS.gene25911.t1 | MTR_7g490310 | 52.761 | 163 | 67 | 3 | 18 | 171 | 4 | 165 | 2.49e-52 | 168 |
| MS.gene25911.t1 | MTR_3g093860 | 58.647 | 133 | 50 | 2 | 24 | 153 | 19 | 149 | 3.36e-49 | 157 |
| MS.gene25911.t1 | MTR_8g038620 | 54.000 | 150 | 58 | 3 | 18 | 158 | 4 | 151 | 1.99e-47 | 154 |
| MS.gene25911.t1 | MTR_3g088630 | 50.667 | 150 | 54 | 2 | 22 | 153 | 21 | 168 | 1.63e-45 | 150 |
| MS.gene25911.t1 | MTR_3g015490 | 49.390 | 164 | 70 | 4 | 20 | 174 | 1 | 160 | 5.93e-44 | 144 |
| MS.gene25911.t1 | MTR_6g007460 | 38.776 | 196 | 68 | 2 | 15 | 158 | 3 | 198 | 4.48e-36 | 125 |
| MS.gene25911.t1 | MTR_4g051330 | 46.053 | 76 | 41 | 0 | 99 | 174 | 74 | 149 | 4.64e-17 | 75.1 |
| MS.gene25911.t1 | MTR_3g092780 | 29.530 | 149 | 95 | 3 | 23 | 171 | 56 | 194 | 5.86e-15 | 72.8 |
| MS.gene25911.t1 | MTR_3g092780 | 29.530 | 149 | 95 | 3 | 23 | 171 | 56 | 194 | 6.01e-15 | 72.8 |
| MS.gene25911.t1 | MTR_3g092780 | 31.298 | 131 | 80 | 3 | 23 | 153 | 56 | 176 | 3.98e-14 | 70.5 |
| MS.gene25911.t1 | MTR_3g092780 | 31.298 | 131 | 80 | 3 | 23 | 153 | 56 | 176 | 4.08e-14 | 70.5 |
| MS.gene25911.t1 | MTR_4g061360 | 30.597 | 134 | 83 | 2 | 20 | 153 | 86 | 209 | 8.35e-12 | 63.9 |
| MS.gene25911.t1 | MTR_8g024260 | 28.682 | 129 | 82 | 2 | 25 | 153 | 38 | 156 | 8.76e-12 | 63.5 |
| MS.gene25911.t1 | MTR_7g118260 | 25.954 | 131 | 87 | 2 | 23 | 153 | 14 | 134 | 2.66e-11 | 62.4 |
| MS.gene25911.t1 | MTR_7g118260 | 25.954 | 131 | 87 | 2 | 23 | 153 | 14 | 134 | 2.73e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25911.t1 | AT3G48100 | 63.187 | 182 | 60 | 3 | 5 | 180 | 2 | 182 | 3.78e-74 | 222 |
| MS.gene25911.t1 | AT1G74890 | 75.333 | 150 | 30 | 3 | 22 | 167 | 17 | 163 | 2.16e-71 | 216 |
| MS.gene25911.t1 | AT5G62920 | 73.793 | 145 | 36 | 2 | 23 | 167 | 25 | 167 | 2.43e-69 | 209 |
| MS.gene25911.t1 | AT1G19050 | 66.456 | 158 | 50 | 2 | 3 | 158 | 2 | 158 | 1.05e-67 | 206 |
| MS.gene25911.t1 | AT1G59940 | 62.286 | 175 | 46 | 5 | 1 | 158 | 1 | 172 | 4.46e-65 | 200 |
| MS.gene25911.t1 | AT1G59940 | 62.286 | 175 | 46 | 5 | 1 | 158 | 93 | 264 | 8.52e-64 | 200 |
| MS.gene25911.t1 | AT1G10470 | 65.772 | 149 | 50 | 1 | 14 | 162 | 11 | 158 | 5.80e-62 | 193 |
| MS.gene25911.t1 | AT1G10470 | 68.571 | 140 | 43 | 1 | 14 | 153 | 25 | 163 | 1.06e-61 | 192 |
| MS.gene25911.t1 | AT2G40670 | 59.559 | 136 | 50 | 2 | 22 | 153 | 28 | 162 | 3.83e-52 | 165 |
| MS.gene25911.t1 | AT3G56380 | 61.417 | 127 | 48 | 1 | 22 | 147 | 19 | 145 | 4.68e-52 | 164 |
| MS.gene25911.t1 | AT3G57040 | 56.849 | 146 | 52 | 2 | 18 | 153 | 4 | 148 | 7.20e-52 | 167 |
| MS.gene25911.t1 | AT3G57040 | 56.849 | 146 | 52 | 2 | 18 | 153 | 4 | 148 | 7.20e-52 | 167 |
| MS.gene25911.t1 | AT2G41310 | 56.000 | 150 | 57 | 3 | 21 | 162 | 7 | 155 | 9.01e-52 | 166 |
| MS.gene25911.t1 | AT2G40670 | 58.824 | 136 | 50 | 3 | 22 | 153 | 28 | 161 | 1.95e-49 | 158 |
| MS.gene25911.t1 | AT3G56380 | 60.630 | 127 | 48 | 2 | 22 | 147 | 19 | 144 | 2.97e-49 | 157 |
| MS.gene25911.t1 | AT1G10470 | 59.722 | 72 | 29 | 0 | 91 | 162 | 25 | 96 | 1.30e-21 | 87.8 |
| MS.gene25911.t1 | AT2G07440 | 51.471 | 68 | 33 | 0 | 95 | 162 | 2 | 69 | 2.33e-15 | 70.1 |
| MS.gene25911.t1 | AT5G07210 | 29.944 | 177 | 98 | 6 | 1 | 175 | 1 | 153 | 5.63e-14 | 70.1 |
| MS.gene25911.t1 | AT5G24470 | 30.534 | 131 | 81 | 3 | 23 | 153 | 50 | 170 | 7.16e-14 | 69.7 |
| MS.gene25911.t1 | AT2G46790 | 28.244 | 131 | 84 | 2 | 23 | 153 | 37 | 157 | 5.74e-13 | 67.0 |
| MS.gene25911.t1 | AT2G46790 | 28.244 | 131 | 84 | 2 | 23 | 153 | 37 | 157 | 6.17e-13 | 67.0 |
| MS.gene25911.t1 | AT1G67710 | 30.137 | 146 | 89 | 3 | 14 | 159 | 2 | 134 | 1.39e-11 | 63.2 |
| MS.gene25911.t1 | AT5G60100 | 31.343 | 134 | 82 | 3 | 20 | 153 | 61 | 184 | 8.01e-11 | 60.8 |
| MS.gene25911.t1 | AT5G60100 | 31.343 | 134 | 82 | 3 | 20 | 153 | 61 | 184 | 8.01e-11 | 60.8 |
| MS.gene25911.t1 | AT5G60100 | 31.343 | 134 | 82 | 3 | 20 | 153 | 61 | 184 | 8.01e-11 | 60.8 |
| MS.gene25911.t1 | AT5G60100 | 31.343 | 134 | 82 | 3 | 20 | 153 | 61 | 184 | 8.26e-11 | 60.8 |
Find 41 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGATCTTACCTATCAATT+CGG | 0.347926 | 3.2:-69366264 | None:intergenic |
| TGAATTGCTCAAGAAGATTA+AGG | 0.356380 | 3.2:+69366030 | MS.gene25911:CDS |
| ACTAGAGCTTTACAGTATCT+TGG | 0.363036 | 3.2:+69365800 | MS.gene25911:CDS |
| AGCTTTACAGTATCTTGGTT+TGG | 0.366392 | 3.2:+69365805 | MS.gene25911:CDS |
| CTACTGCTGGTGATGTTCTC+AGG | 0.387823 | 3.2:+69365532 | MS.gene25911:CDS |
| TGTTCTCAGGCAGAGTTTAC+CGG | 0.414947 | 3.2:+69365545 | MS.gene25911:CDS |
| TTCACATCTGCCAACTTGAC+AGG | 0.430476 | 3.2:-69367432 | None:intergenic |
| ATGAATCAATGGTTATAGTC+TGG | 0.434730 | 3.2:-69367616 | None:intergenic |
| ACATCTTGACCCGAATTGAT+AGG | 0.448548 | 3.2:+69366254 | MS.gene25911:CDS |
| ATGACAGATTATTCTATGCC+TGG | 0.452458 | 3.2:+69365995 | MS.gene25911:CDS |
| TATTCTATGCCTGGGATGAC+AGG | 0.453139 | 3.2:+69366004 | MS.gene25911:CDS |
| CTTAAATTCACTTCTTGCAA+AGG | 0.463478 | 3.2:+69365651 | MS.gene25911:CDS |
| ATTGACAGTTGCTTGGAAGA+AGG | 0.475916 | 3.2:+69367387 | MS.gene25911:intron |
| ACACCAGCACCACTTACTTC+CGG | 0.479536 | 3.2:-69365564 | None:intergenic |
| TTACAGTATCTTGGTTTGGA+TGG | 0.481557 | 3.2:+69365809 | MS.gene25911:CDS |
| GATGGTGACACGAGTTCCAT+TGG | 0.497003 | 3.2:+69365827 | MS.gene25911:CDS |
| AAGATCTTACCTATCAATTC+GGG | 0.507592 | 3.2:-69366263 | None:intergenic |
| TTTGTTCATTGACAGTTGCT+TGG | 0.513588 | 3.2:+69367380 | MS.gene25911:intron |
| AGAGGTGAAGGAAAGAAAGT+CGG | 0.518178 | 3.2:+69367477 | MS.gene25911:CDS |
| TTTGCTTACATCAAAACCAA+TGG | 0.528283 | 3.2:-69365843 | None:intergenic |
| TTACCGGAAGTAAGTGGTGC+TGG | 0.532656 | 3.2:+69365561 | MS.gene25911:CDS |
| GAAGTAAGTGGTGCTGGTGT+TGG | 0.533059 | 3.2:+69365567 | MS.gene25911:CDS |
| TTGATCGCAAAGTCATTGAA+AGG | 0.535022 | 3.2:+69365625 | MS.gene25911:CDS |
| GCAGTTACTGTTGTTGAGAG+TGG | 0.535906 | 3.2:+69365776 | MS.gene25911:intron |
| AATTCATATCCTGTCATCCC+AGG | 0.536075 | 3.2:-69366013 | None:intergenic |
| TTGTATTTCATCTCTATCAA+CGG | 0.543618 | 3.2:+69367536 | MS.gene25911:CDS |
| TGACAGATTATTCTATGCCT+GGG | 0.547632 | 3.2:+69365996 | MS.gene25911:CDS |
| TCAGAGGACATAACCACCAC+TGG | 0.556667 | 3.2:-69366229 | None:intergenic |
| TCTATTGAAACCTGTCAAGT+TGG | 0.561378 | 3.2:+69367422 | MS.gene25911:CDS |
| TTCTTTGACGACATTGCAGA+CGG | 0.571495 | 3.2:-69367591 | None:intergenic |
| GGTGAAGGAAAGAAAGTCGG+AGG | 0.571633 | 3.2:+69367480 | MS.gene25911:CDS |
| AGAGTTGCACGTTCTTGCAG+TGG | 0.580799 | 3.2:+69365590 | MS.gene25911:CDS |
| GATTTCATAATGAGAGGTGA+AGG | 0.593144 | 3.2:+69367465 | MS.gene25911:CDS |
| TTAACAGATTTCATAATGAG+AGG | 0.593540 | 3.2:+69367459 | MS.gene25911:CDS |
| GACATTGCAGACGGTGACAA+TGG | 0.595350 | 3.2:-69367582 | None:intergenic |
| CAGAGTTTACCGGAAGTAAG+TGG | 0.596307 | 3.2:+69365555 | MS.gene25911:CDS |
| TTGCTTGGAAGAAGGAGCAG+AGG | 0.596704 | 3.2:+69367395 | MS.gene25911:CDS |
| AATATGGTTACAGGGTGTGA+AGG | 0.609461 | 3.2:+69365961 | MS.gene25911:intron |
| ATGTAGAGAAATTCCAGTGG+TGG | 0.649355 | 3.2:+69366216 | MS.gene25911:CDS |
| TCGGGTCAAGATGTTCTCAG+AGG | 0.723155 | 3.2:-69366245 | None:intergenic |
| TGTATGTAGAGAAATTCCAG+TGG | 0.756024 | 3.2:+69366213 | MS.gene25911:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATAAAAGAATTGCAT+AGG | - | chr3.2:69366419-69366438 | None:intergenic | 15.0% |
| !! | AAACACATAAAAAATTCAAA+AGG | - | chr3.2:69365702-69365721 | None:intergenic | 15.0% |
| !! | AACACATAAAAAATTCAAAA+GGG | - | chr3.2:69365701-69365720 | None:intergenic | 15.0% |
| !!! | ATTAAAGACATGTATATTTT+TGG | + | chr3.2:69366455-69366474 | MS.gene25911:intron | 15.0% |
| !!! | TGTGTTTTTTTTTTTTTTTG+AGG | + | chr3.2:69365894-69365913 | MS.gene25911:intron | 15.0% |
| !! | AAACAATACTAATTCAAAAG+AGG | - | chr3.2:69366303-69366322 | None:intergenic | 20.0% |
| !! | AAAGATCTCAATATCTAATT+AGG | + | chr3.2:69366693-69366712 | MS.gene25911:intron | 20.0% |
| !! | AAATATCTCAAAAAAGAAGT+CGG | + | chr3.2:69367505-69367524 | MS.gene25911:CDS | 20.0% |
| !! | ATAATTTCAGGAATAAAAGT+AGG | - | chr3.2:69367198-69367217 | None:intergenic | 20.0% |
| !! | ATGATCAATAAATATGAAAC+AGG | - | chr3.2:69367355-69367374 | None:intergenic | 20.0% |
| !! | GTCTTTAATACAAAAACTAA+AGG | - | chr3.2:69366444-69366463 | None:intergenic | 20.0% |
| !!! | GATTAGTTATAGTTACATAT+TGG | + | chr3.2:69366375-69366394 | MS.gene25911:intron | 20.0% |
| !!! | TTATGTGTTTTTTGTTCATT+TGG | + | chr3.2:69365712-69365731 | MS.gene25911:intron | 20.0% |
| ! | AATCCTTTCACTAAAATGAT+AGG | + | chr3.2:69366921-69366940 | MS.gene25911:intron | 25.0% |
| ! | AATCTCAGCTAAAAAACAAT+AGG | - | chr3.2:69366334-69366353 | None:intergenic | 25.0% |
| ! | ATCCATTTGTGAAATATGTA+TGG | + | chr3.2:69366502-69366521 | MS.gene25911:intron | 25.0% |
| ! | CTCAATATCTAATTAGGTTT+AGG | + | chr3.2:69366699-69366718 | MS.gene25911:intron | 25.0% |
| ! | GTGAAATATGTATGGTATAT+GGG | + | chr3.2:69366510-69366529 | MS.gene25911:intron | 25.0% |
| ! | TAACATGGTGATATTATTGA+GGG | - | chr3.2:69366992-69367011 | None:intergenic | 25.0% |
| ! | TACCATACATATTTCACAAA+TGG | - | chr3.2:69366507-69366526 | None:intergenic | 25.0% |
| ! | TAGAATAAGAAAAAACGTGT+GGG | - | chr3.2:69366545-69366564 | None:intergenic | 25.0% |
| ! | TATAATTGCCACACAATTAT+AGG | + | chr3.2:69367149-69367168 | MS.gene25911:intron | 25.0% |
| ! | TGATAAAACCTATAATTGTG+TGG | - | chr3.2:69367160-69367179 | None:intergenic | 25.0% |
| ! | TGTGAAATATGTATGGTATA+TGG | + | chr3.2:69366509-69366528 | MS.gene25911:intron | 25.0% |
| ! | TTAACAGATTTCATAATGAG+AGG | + | chr3.2:69367459-69367478 | MS.gene25911:CDS | 25.0% |
| ! | TTGCAAAATCTTTCTACTAA+TGG | + | chr3.2:69366955-69366974 | MS.gene25911:intron | 25.0% |
| ! | TTGTATTTCATCTCTATCAA+CGG | + | chr3.2:69367536-69367555 | MS.gene25911:CDS | 25.0% |
| !! | GATTGGATTCTAATGTTTTT+CGG | + | chr3.2:69365734-69365753 | MS.gene25911:intron | 25.0% |
| !! | GTAAGCAAAGTTTCTAATTT+TGG | + | chr3.2:69365857-69365876 | MS.gene25911:intron | 25.0% |
| !! | GTATTTTCAGTTTTTGTGTT+TGG | + | chr3.2:69365916-69365935 | MS.gene25911:intron | 25.0% |
| !! | TTTTGATGAATATGGTTACA+GGG | + | chr3.2:69365953-69365972 | MS.gene25911:intron | 25.0% |
| !!! | TAACCTATCATTTTAGTGAA+AGG | - | chr3.2:69366927-69366946 | None:intergenic | 25.0% |
| !!! | TCATTTTAGTGAAAGGATTT+TGG | - | chr3.2:69366920-69366939 | None:intergenic | 25.0% |
| !!! | TGTTGTTGTTTTGATGAATA+TGG | + | chr3.2:69365945-69365964 | MS.gene25911:intron | 25.0% |
| !!! | TGTTTTTTGTTCATTTGGAT+TGG | + | chr3.2:69365717-69365736 | MS.gene25911:intron | 25.0% |
| !!! | TTATTTCTGTTAATTTCAGC+AGG | + | chr3.2:69366183-69366202 | MS.gene25911:intron | 25.0% |
| AAGATCTTACCTATCAATTC+GGG | - | chr3.2:69366266-69366285 | None:intergenic | 30.0% | |
| AAGTAAGAAACTTCCATTCA+TGG | - | chr3.2:69367327-69367346 | None:intergenic | 30.0% | |
| ACAAAAATACAACATAGCCT+TGG | - | chr3.2:69366841-69366860 | None:intergenic | 30.0% | |
| ATATCTAATTAGGTTTAGGC+TGG | + | chr3.2:69366703-69366722 | MS.gene25911:intron | 30.0% | |
| ATATTACCAATTTACCACCA+AGG | + | chr3.2:69366821-69366840 | MS.gene25911:intron | 30.0% | |
| CAAGATCTTACCTATCAATT+CGG | - | chr3.2:69366267-69366286 | None:intergenic | 30.0% | |
| CACTACAATCTAATCTAATC+AGG | - | chr3.2:69366128-69366147 | None:intergenic | 30.0% | |
| CATATTGCCAATCATTAAGA+AGG | - | chr3.2:69366767-69366786 | None:intergenic | 30.0% | |
| CATTAAGCCTTCTTAATGAT+TGG | + | chr3.2:69366757-69366776 | MS.gene25911:intron | 30.0% | |
| CTAACATGGTGATATTATTG+AGG | - | chr3.2:69366993-69367012 | None:intergenic | 30.0% | |
| CTAGAATAAGAAAAAACGTG+TGG | - | chr3.2:69366546-69366565 | None:intergenic | 30.0% | |
| CTTAAATTCACTTCTTGCAA+AGG | + | chr3.2:69365651-69365670 | MS.gene25911:CDS | 30.0% | |
| GAAGGTTCAACATAACAAAA+TGG | - | chr3.2:69367230-69367249 | None:intergenic | 30.0% | |
| GAGAAAAGGGATTTATTGTT+TGG | - | chr3.2:69366885-69366904 | None:intergenic | 30.0% | |
| TGAATTGCTCAAGAAGATTA+AGG | + | chr3.2:69366030-69366049 | MS.gene25911:CDS | 30.0% | |
| TGGTGTTTGTCAATAATTTC+AGG | - | chr3.2:69367210-69367229 | None:intergenic | 30.0% | |
| TTTGCTTACATCAAAACCAA+TGG | - | chr3.2:69365846-69365865 | None:intergenic | 30.0% | |
| ! | AAATGGATTTCATGTCTAGA+TGG | - | chr3.2:69366490-69366509 | None:intergenic | 30.0% |
| ! | AATGGATTTCATGTCTAGAT+GGG | - | chr3.2:69366489-69366508 | None:intergenic | 30.0% |
| ! | ATGAAATCCATTTTCCTACA+AGG | + | chr3.2:69367093-69367112 | MS.gene25911:intron | 30.0% |
| ! | CAAATTTGATGATCCATGAA+TGG | + | chr3.2:69367311-69367330 | MS.gene25911:intron | 30.0% |
| ! | GATGTATGTATTGATGAAAG+AGG | + | chr3.2:69366096-69366115 | MS.gene25911:intron | 30.0% |
| !! | GTTTTGATGAATATGGTTAC+AGG | + | chr3.2:69365952-69365971 | MS.gene25911:intron | 30.0% |
| !!! | CACACGTTTTTTCTTATTCT+AGG | + | chr3.2:69366544-69366563 | MS.gene25911:intron | 30.0% |
| !!! | CGTTTTTTCTTATTCTAGGT+TGG | + | chr3.2:69366548-69366567 | MS.gene25911:intron | 30.0% |
| AAATCCAATAATAGCCATGG+TGG | + | chr3.2:69366618-69366637 | MS.gene25911:intron | 35.0% | |
| AATCCAATAATAGCCATGGT+GGG | + | chr3.2:69366619-69366638 | MS.gene25911:intron | 35.0% | |
| ACCAAATCCAATAATAGCCA+TGG | + | chr3.2:69366615-69366634 | MS.gene25911:intron | 35.0% | |
| ACCATGGCTATTATTGGATT+TGG | - | chr3.2:69366619-69366638 | None:intergenic | 35.0% | |
| ACTAGAGCTTTACAGTATCT+TGG | + | chr3.2:69365800-69365819 | MS.gene25911:CDS | 35.0% | |
| AGCTTTACAGTATCTTGGTT+TGG | + | chr3.2:69365805-69365824 | MS.gene25911:CDS | 35.0% | |
| ATGACAGATTATTCTATGCC+TGG | + | chr3.2:69365995-69366014 | MS.gene25911:CDS | 35.0% | |
| ATGGCTATTATTGGATTTGG+TGG | - | chr3.2:69366616-69366635 | None:intergenic | 35.0% | |
| CATGGATCATCAAATTTGCA+AGG | - | chr3.2:69367309-69367328 | None:intergenic | 35.0% | |
| GATTTCATAATGAGAGGTGA+AGG | + | chr3.2:69367465-69367484 | MS.gene25911:CDS | 35.0% | |
| TCTATTGAAACCTGTCAAGT+TGG | + | chr3.2:69367422-69367441 | MS.gene25911:CDS | 35.0% | |
| TGACAGATTATTCTATGCCT+GGG | + | chr3.2:69365996-69366015 | MS.gene25911:CDS | 35.0% | |
| TGTATGTAGAGAAATTCCAG+TGG | + | chr3.2:69366213-69366232 | MS.gene25911:CDS | 35.0% | |
| TTGATCGCAAAGTCATTGAA+AGG | + | chr3.2:69365625-69365644 | MS.gene25911:CDS | 35.0% | |
| TTTGTTCATTGACAGTTGCT+TGG | + | chr3.2:69367380-69367399 | MS.gene25911:intron | 35.0% | |
| ! | AAAATACAACATAGCCTTGG+TGG | - | chr3.2:69366838-69366857 | None:intergenic | 35.0% |
| !! | TTACAGTATCTTGGTTTGGA+TGG | + | chr3.2:69365809-69365828 | MS.gene25911:CDS | 35.0% |
| AATAATGTTGTCATGCCAGC+AGG | - | chr3.2:69367121-69367140 | None:intergenic | 40.0% | |
| AATATGGTTACAGGGTGTGA+AGG | + | chr3.2:69365961-69365980 | MS.gene25911:intron | 40.0% | |
| AATTCATATCCTGTCATCCC+AGG | - | chr3.2:69366016-69366035 | None:intergenic | 40.0% | |
| ACATCTTGACCCGAATTGAT+AGG | + | chr3.2:69366254-69366273 | MS.gene25911:CDS | 40.0% | |
| AGAGGTGAAGGAAAGAAAGT+CGG | + | chr3.2:69367477-69367496 | MS.gene25911:CDS | 40.0% | |
| ATAATGTTGTCATGCCAGCA+GGG | - | chr3.2:69367120-69367139 | None:intergenic | 40.0% | |
| ATGATTATGATCACCCACCA+TGG | - | chr3.2:69366635-69366654 | None:intergenic | 40.0% | |
| ATGTAGAGAAATTCCAGTGG+TGG | + | chr3.2:69366216-69366235 | MS.gene25911:CDS | 40.0% | |
| ATTCCCTTATAAGGCTGAGA+AGG | - | chr3.2:69367248-69367267 | None:intergenic | 40.0% | |
| ATTGACAGTTGCTTGGAAGA+AGG | + | chr3.2:69367387-69367406 | MS.gene25911:intron | 40.0% | |
| CCATGTGTCTAACTCTAACA+TGG | - | chr3.2:69367007-69367026 | None:intergenic | 40.0% | |
| CCATGTTAGAGTTAGACACA+TGG | + | chr3.2:69367004-69367023 | MS.gene25911:intron | 40.0% | |
| CTCATGCACATTCCCTTATA+AGG | - | chr3.2:69367257-69367276 | None:intergenic | 40.0% | |
| TTCTTTGACGACATTGCAGA+CGG | - | chr3.2:69367594-69367613 | None:intergenic | 40.0% | |
| ! | ACATAGCCTTGGTGGTAAAT+TGG | - | chr3.2:69366830-69366849 | None:intergenic | 40.0% |
| ! | GAACCTTCTCAGCCTTATAA+GGG | + | chr3.2:69367242-69367261 | MS.gene25911:intron | 40.0% |
| ! | TGAACCTTCTCAGCCTTATA+AGG | + | chr3.2:69367241-69367260 | MS.gene25911:intron | 40.0% |
| !! | AAAGGATTTTGGCCATGTGT+TGG | - | chr3.2:69366909-69366928 | None:intergenic | 40.0% |
| AGAGTTAGACACATGGAGTG+TGG | + | chr3.2:69367011-69367030 | MS.gene25911:intron | 45.0% | |
| CAGAGTTTACCGGAAGTAAG+TGG | + | chr3.2:69365555-69365574 | MS.gene25911:CDS | 45.0% | |
| GCAGTTACTGTTGTTGAGAG+TGG | + | chr3.2:69365776-69365795 | MS.gene25911:intron | 45.0% | |
| TATTCTATGCCTGGGATGAC+AGG | + | chr3.2:69366004-69366023 | MS.gene25911:CDS | 45.0% | |
| TCACCCACCATGGCTATTAT+TGG | - | chr3.2:69366625-69366644 | None:intergenic | 45.0% | |
| TGTTCTCAGGCAGAGTTTAC+CGG | + | chr3.2:69365545-69365564 | MS.gene25911:CDS | 45.0% | |
| TTCACATCTGCCAACTTGAC+AGG | - | chr3.2:69367435-69367454 | None:intergenic | 45.0% | |
| ! | GCCATGTGTTGGTGAGAAAA+GGG | - | chr3.2:69366898-69366917 | None:intergenic | 45.0% |
| ! | TCCCTTTTCTCACCAACACA+TGG | + | chr3.2:69366894-69366913 | MS.gene25911:intron | 45.0% |
| ACACCAGCACCACTTACTTC+CGG | - | chr3.2:69365567-69365586 | None:intergenic | 50.0% | |
| AGAGTTGCACGTTCTTGCAG+TGG | + | chr3.2:69365590-69365609 | MS.gene25911:CDS | 50.0% | |
| GACATTGCAGACGGTGACAA+TGG | - | chr3.2:69367585-69367604 | None:intergenic | 50.0% | |
| GATGGTGACACGAGTTCCAT+TGG | + | chr3.2:69365827-69365846 | MS.gene25911:CDS | 50.0% | |
| GCAGGGTCCTTGTAGGAAAA+TGG | - | chr3.2:69367103-69367122 | None:intergenic | 50.0% | |
| GGTGAAGGAAAGAAAGTCGG+AGG | + | chr3.2:69367480-69367499 | MS.gene25911:CDS | 50.0% | |
| TCAGAGGACATAACCACCAC+TGG | - | chr3.2:69366232-69366251 | None:intergenic | 50.0% | |
| TCGGGTCAAGATGTTCTCAG+AGG | - | chr3.2:69366248-69366267 | None:intergenic | 50.0% | |
| TTACCGGAAGTAAGTGGTGC+TGG | + | chr3.2:69365561-69365580 | MS.gene25911:CDS | 50.0% | |
| TTGCTTGGAAGAAGGAGCAG+AGG | + | chr3.2:69367395-69367414 | MS.gene25911:CDS | 50.0% | |
| ! | CTACTGCTGGTGATGTTCTC+AGG | + | chr3.2:69365532-69365551 | MS.gene25911:CDS | 50.0% |
| ! | GGCCATGTGTTGGTGAGAAA+AGG | - | chr3.2:69366899-69366918 | None:intergenic | 50.0% |
| ! | GTTTAGGCTGGCACTGAATG+TGG | + | chr3.2:69366715-69366734 | MS.gene25911:intron | 50.0% |
| ! | TTTTCCTACAAGGACCCTGC+TGG | + | chr3.2:69367103-69367122 | MS.gene25911:intron | 50.0% |
| !! | GAAGTAAGTGGTGCTGGTGT+TGG | + | chr3.2:69365567-69365586 | MS.gene25911:CDS | 50.0% |
| CATGCCAGCAGGGTCCTTGT+AGG | - | chr3.2:69367110-69367129 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 69365528 | 69367626 | 69365528 | ID=MS.gene25911 |
| chr3.2 | mRNA | 69365528 | 69367626 | 69365528 | ID=MS.gene25911.t1;Parent=MS.gene25911 |
| chr3.2 | exon | 69365528 | 69365672 | 69365528 | ID=MS.gene25911.t1.exon1;Parent=MS.gene25911.t1 |
| chr3.2 | CDS | 69365528 | 69365672 | 69365528 | ID=cds.MS.gene25911.t1;Parent=MS.gene25911.t1 |
| chr3.2 | exon | 69365780 | 69365856 | 69365780 | ID=MS.gene25911.t1.exon2;Parent=MS.gene25911.t1 |
| chr3.2 | CDS | 69365780 | 69365856 | 69365780 | ID=cds.MS.gene25911.t1;Parent=MS.gene25911.t1 |
| chr3.2 | exon | 69365974 | 69366051 | 69365974 | ID=MS.gene25911.t1.exon3;Parent=MS.gene25911.t1 |
| chr3.2 | CDS | 69365974 | 69366051 | 69365974 | ID=cds.MS.gene25911.t1;Parent=MS.gene25911.t1 |
| chr3.2 | exon | 69366202 | 69366275 | 69366202 | ID=MS.gene25911.t1.exon4;Parent=MS.gene25911.t1 |
| chr3.2 | CDS | 69366202 | 69366275 | 69366202 | ID=cds.MS.gene25911.t1;Parent=MS.gene25911.t1 |
| chr3.2 | exon | 69367395 | 69367626 | 69367395 | ID=MS.gene25911.t1.exon5;Parent=MS.gene25911.t1 |
| chr3.2 | CDS | 69367395 | 69367626 | 69367395 | ID=cds.MS.gene25911.t1;Parent=MS.gene25911.t1 |
| Gene Sequence |
| Protein sequence |
