Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25973.t1 | XP_003601249.1 | 96.6 | 352 | 12 | 0 | 1 | 352 | 1 | 352 | 2.10E-198 | 701.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25973.t1 | G7J5E4 | 96.6 | 352 | 12 | 0 | 1 | 352 | 1 | 352 | 1.5e-198 | 701.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene44353 | MS.gene25973 | PPI |
| MS.gene80715 | MS.gene25973 | PPI |
| MS.gene25973 | MS.gene53464 | PPI |
| MS.gene027656 | MS.gene25973 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25973.t1 | MTR_3g077630 | 96.591 | 352 | 12 | 0 | 1 | 352 | 1 | 352 | 0.0 | 702 |
| MS.gene25973.t1 | MTR_4g105600 | 68.362 | 354 | 106 | 4 | 1 | 352 | 1 | 350 | 4.42e-180 | 503 |
| MS.gene25973.t1 | MTR_8g069820 | 49.575 | 353 | 169 | 4 | 1 | 352 | 1 | 345 | 1.89e-123 | 359 |
| MS.gene25973.t1 | MTR_5g033940 | 50.742 | 337 | 157 | 2 | 16 | 352 | 1 | 328 | 2.08e-118 | 345 |
| MS.gene25973.t1 | MTR_7g035095 | 50.602 | 332 | 143 | 5 | 19 | 350 | 8 | 318 | 5.10e-114 | 334 |
| MS.gene25973.t1 | MTR_8g069805 | 47.042 | 355 | 163 | 5 | 8 | 352 | 21 | 360 | 5.09e-113 | 333 |
| MS.gene25973.t1 | MTR_1g086330 | 39.286 | 336 | 175 | 5 | 27 | 348 | 5 | 325 | 1.45e-76 | 239 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25973.t1 | AT5G62960 | 54.728 | 349 | 134 | 5 | 9 | 352 | 18 | 347 | 4.22e-136 | 391 |
| MS.gene25973.t1 | AT1G70505 | 51.734 | 346 | 160 | 4 | 2 | 347 | 13 | 351 | 2.53e-122 | 356 |
| MS.gene25973.t1 | AT5G62960 | 54.662 | 311 | 117 | 5 | 9 | 314 | 18 | 309 | 1.71e-118 | 345 |
| MS.gene25973.t1 | AT1G70505 | 51.807 | 332 | 153 | 4 | 16 | 347 | 1 | 325 | 5.71e-116 | 339 |
| MS.gene25973.t1 | AT1G10660 | 49.240 | 329 | 156 | 3 | 16 | 344 | 1 | 318 | 6.49e-110 | 323 |
| MS.gene25973.t1 | AT1G10660 | 49.240 | 329 | 156 | 3 | 16 | 344 | 1 | 318 | 6.49e-110 | 323 |
| MS.gene25973.t1 | AT1G10660 | 49.240 | 329 | 156 | 3 | 16 | 344 | 1 | 318 | 6.49e-110 | 323 |
| MS.gene25973.t1 | AT1G10660 | 49.240 | 329 | 156 | 3 | 16 | 344 | 1 | 318 | 6.49e-110 | 323 |
| MS.gene25973.t1 | AT3G27770 | 45.283 | 318 | 159 | 4 | 24 | 341 | 13 | 315 | 2.47e-91 | 276 |
| MS.gene25973.t1 | AT1G70505 | 47.388 | 268 | 134 | 4 | 2 | 269 | 13 | 273 | 5.53e-78 | 243 |
| MS.gene25973.t1 | AT3G27770 | 45.136 | 257 | 134 | 2 | 85 | 341 | 23 | 272 | 5.51e-73 | 228 |
| MS.gene25973.t1 | AT1G70505 | 47.222 | 252 | 126 | 4 | 16 | 267 | 1 | 245 | 1.30e-72 | 226 |
| MS.gene25973.t1 | AT2G47115 | 36.533 | 323 | 173 | 4 | 27 | 347 | 5 | 297 | 3.17e-60 | 196 |
Find 67 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAGAGTTATTGGATTAAT+TGG | 0.135883 | 3.3:-65863013 | MS.gene25973:CDS |
| TGCTCACTGATTGTGTATTT+TGG | 0.163861 | 3.3:-65861674 | MS.gene25973:CDS |
| ACCTGGAGGCCTTGTTTAAA+AGG | 0.225203 | 3.3:-65862834 | MS.gene25973:CDS |
| AGACAAATACACAGAGTTAT+TGG | 0.237042 | 3.3:-65863022 | MS.gene25973:CDS |
| AATTCACCCTGCCTGGCTTT+TGG | 0.246613 | 3.3:-65862811 | MS.gene25973:CDS |
| TATACTTACCCCAAAGTAAA+AGG | 0.252087 | 3.3:+65862194 | None:intergenic |
| GAAATCAAGTGGTGATAATA+AGG | 0.310675 | 3.3:-65862019 | MS.gene25973:CDS |
| TTTCGCGTTTATTGTGCTTT+TGG | 0.313165 | 3.3:-65862778 | MS.gene25973:CDS |
| GTTTAGATTGTAATCTTTGA+TGG | 0.322863 | 3.3:+65861629 | None:intergenic |
| ATTGTCAATGTTGTTGTTGA+TGG | 0.329364 | 3.3:-65862747 | MS.gene25973:CDS |
| ATTTGTCTTAACAGTCATAA+TGG | 0.332466 | 3.3:+65863037 | None:intergenic |
| ATGGGTTCCCATGAGCCTTT+AGG | 0.343227 | 3.3:+65863056 | None:intergenic |
| TTTGTCTTAACAGTCATAAT+GGG | 0.380779 | 3.3:+65863038 | None:intergenic |
| TCGCCAACATGCTGGAACTT+GGG | 0.386612 | 3.3:-65861881 | MS.gene25973:CDS |
| TTCGCCAACATGCTGGAACT+TGG | 0.393037 | 3.3:-65861882 | MS.gene25973:CDS |
| TAATCTTTGATGGTTAGAAA+TGG | 0.396997 | 3.3:+65861639 | None:intergenic |
| GCCTTTCCCTTGGTTTCGAA+TGG | 0.405870 | 3.3:-65861330 | MS.gene25973:CDS |
| TTCATGCTTGCATTAATCTC+TGG | 0.416369 | 3.3:-65861259 | MS.gene25973:intron |
| TGATACAGCTTTAAATTGTC+TGG | 0.419901 | 3.3:-65861443 | MS.gene25973:intron |
| CGAAAAGCCAAAAGCCAGGC+AGG | 0.426327 | 3.3:+65862804 | None:intergenic |
| GAGGATGACAAGTCAAGAAA+TGG | 0.433463 | 3.3:+65861130 | None:intergenic |
| GCTCTCTTCAGCCTTTCCCT+TGG | 0.434934 | 3.3:-65861340 | MS.gene25973:intron |
| TAAAAGGAATTCACCCTGCC+TGG | 0.437629 | 3.3:-65862818 | MS.gene25973:CDS |
| CACTTGATTTCTTATGATGT+TGG | 0.439825 | 3.3:+65862031 | None:intergenic |
| TTGGCGAACAATAACTTCTT+CGG | 0.458839 | 3.3:+65861897 | None:intergenic |
| GTCTCAACAAGAAATGTTAG+TGG | 0.460047 | 3.3:-65862903 | MS.gene25973:CDS |
| CCTTTCCCTTGGTTTCGAAT+GGG | 0.468182 | 3.3:-65861329 | MS.gene25973:CDS |
| TTGATATGAGTCGGGGTAGC+GGG | 0.468763 | 3.3:+65860804 | None:intergenic |
| CTAACACATTGATATGAGTC+GGG | 0.484149 | 3.3:+65860796 | None:intergenic |
| TTTCTAACAGGCTCTCCTAA+AGG | 0.487904 | 3.3:-65863071 | MS.gene25973:CDS |
| TCTGATGCATTAGAACTTTG+TGG | 0.494592 | 3.3:+65861943 | None:intergenic |
| GTTATTGTTCGCCAACATGC+TGG | 0.506700 | 3.3:-65861889 | MS.gene25973:CDS |
| CAGGCTCTCCTAAAGGCTCA+TGG | 0.510113 | 3.3:-65863064 | MS.gene25973:CDS |
| AGAGTTATTGGATTAATTGG+AGG | 0.510956 | 3.3:-65863010 | MS.gene25973:CDS |
| GACAAGTCAAGAAATGGATA+AGG | 0.518669 | 3.3:+65861136 | None:intergenic |
| CGCCAACATGCTGGAACTTG+GGG | 0.519334 | 3.3:-65861880 | MS.gene25973:CDS |
| TGCAAGCATGAACAATCCAT+TGG | 0.520315 | 3.3:+65861270 | None:intergenic |
| GATTTCTAGGTACTTTGCTG+TGG | 0.521399 | 3.3:-65860896 | MS.gene25973:intron |
| AACCCGAAAAGCCAAAAGCC+AGG | 0.523042 | 3.3:+65862800 | None:intergenic |
| ATACCAGAGTGGAGCATATG+AGG | 0.527124 | 3.3:+65861111 | None:intergenic |
| CTGATGCATTAGAACTTTGT+GGG | 0.528959 | 3.3:+65861944 | None:intergenic |
| ACTTGTGAATAGATAAATGC+AGG | 0.536058 | 3.3:-65861705 | MS.gene25973:intron |
| GTCAATGTTGTTGTTGATGG+AGG | 0.537253 | 3.3:-65862744 | MS.gene25973:CDS |
| GAGTTATTGGATTAATTGGA+GGG | 0.537811 | 3.3:-65863009 | MS.gene25973:CDS |
| TTAAAGCTGTATCACCTATG+AGG | 0.539460 | 3.3:+65861452 | None:intergenic |
| TCTAACACATTGATATGAGT+CGG | 0.542148 | 3.3:+65860795 | None:intergenic |
| TTACTGCACATTCCATGCTA+TGG | 0.562491 | 3.3:-65860871 | MS.gene25973:CDS |
| TGATAATAAGGTTGATAATG+TGG | 0.562805 | 3.3:-65862007 | MS.gene25973:CDS |
| CCCATTCGAAACCAAGGGAA+AGG | 0.571956 | 3.3:+65861329 | None:intergenic |
| GGATCAATACTGTCCATGCA+TGG | 0.577489 | 3.3:-65862060 | MS.gene25973:CDS |
| AGGCTCTCCTAAAGGCTCAT+GGG | 0.579776 | 3.3:-65863063 | MS.gene25973:CDS |
| ATTGATATGAGTCGGGGTAG+CGG | 0.581054 | 3.3:+65860803 | None:intergenic |
| AATAAGGTTGATAATGTGGA+TGG | 0.581138 | 3.3:-65862003 | MS.gene25973:CDS |
| AAAGTGAAAATACCATAGCA+TGG | 0.583624 | 3.3:+65860859 | None:intergenic |
| AAGTATCCCATTCGAAACCA+AGG | 0.584984 | 3.3:+65861323 | None:intergenic |
| CAACATCATAAGAAATCAAG+TGG | 0.586505 | 3.3:-65862030 | MS.gene25973:CDS |
| AACCCCAAGTTCCAGCATGT+TGG | 0.588542 | 3.3:+65861878 | None:intergenic |
| CATCCTCATATGCTCCACTC+TGG | 0.593145 | 3.3:-65861114 | MS.gene25973:intron |
| TAGTGGAAGAGAAAGAGAAG+CGG | 0.595008 | 3.3:-65862886 | MS.gene25973:CDS |
| GAAAAGCCAAAAGCCAGGCA+GGG | 0.595715 | 3.3:+65862805 | None:intergenic |
| AGTATCCCATTCGAAACCAA+GGG | 0.618643 | 3.3:+65861324 | None:intergenic |
| GTGGATGGAGATGCAGAGCA+AGG | 0.625282 | 3.3:-65861988 | MS.gene25973:CDS |
| GCGAACAATAACTTCTTCGG+AGG | 0.642088 | 3.3:+65861900 | None:intergenic |
| TAACACATTGATATGAGTCG+GGG | 0.681170 | 3.3:+65860797 | None:intergenic |
| ATGTTGGTAACATCCATGCA+TGG | 0.683290 | 3.3:+65862047 | None:intergenic |
| GAGTAAAGTTCATACCAGAG+TGG | 0.715233 | 3.3:+65861100 | None:intergenic |
| TGTACGAGGATGAAACCTGG+AGG | 0.758950 | 3.3:-65862848 | MS.gene25973:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGCAATTAATAATATTTT+AGG | - | chr3.3:65861297-65861316 | MS.gene25973:CDS | 10.0% |
| !!! | TTTGATTTTGATTTTTTTTA+TGG | - | chr3.3:65861619-65861638 | MS.gene25973:intron | 10.0% |
| !! | AAAATAGTTTATTACTTCAT+AGG | + | chr3.3:65862880-65862899 | None:intergenic | 15.0% |
| !! | AATACTATAATCAATATAAG+TGG | + | chr3.3:65862350-65862369 | None:intergenic | 15.0% |
| !! | GTATATATAGCATTATAATT+TGG | - | chr3.3:65861247-65861266 | MS.gene25973:intron | 15.0% |
| !!! | TAATAAACTATTTTAGAACT+CGG | - | chr3.3:65862886-65862905 | MS.gene25973:CDS | 15.0% |
| !!! | TATTTTTCAAATAATATTCC+AGG | - | chr3.3:65862015-65862034 | MS.gene25973:CDS | 15.0% |
| !!! | TTTTGTTTTGTTTTAAGATT+TGG | - | chr3.3:65861190-65861209 | MS.gene25973:intron | 15.0% |
| !! | AGAGATTATATAGTATATGA+TGG | + | chr3.3:65861750-65861769 | None:intergenic | 20.0% |
| !! | GAACAAAAACTAAAAAACAA+AGG | + | chr3.3:65862642-65862661 | None:intergenic | 20.0% |
| !! | TTATAATGCTATATATACAG+AGG | + | chr3.3:65861245-65861264 | None:intergenic | 20.0% |
| !!! | AATAAACTATTTTAGAACTC+GGG | - | chr3.3:65862887-65862906 | MS.gene25973:CDS | 20.0% |
| !!! | TTGATTATAGTATTCTTTTG+TGG | - | chr3.3:65862356-65862375 | MS.gene25973:intron | 20.0% |
| !!! | TTTTAAGATTTGGTATCTTT+TGG | - | chr3.3:65861200-65861219 | MS.gene25973:intron | 20.0% |
| ! | AAAATTGAAAAAACTGTACC+TGG | + | chr3.3:65862036-65862055 | None:intergenic | 25.0% |
| ! | AAATAAGAGACTTCAAAACT+TGG | - | chr3.3:65862316-65862335 | MS.gene25973:intron | 25.0% |
| ! | AAATATTGTCTGGCTATAAA+TGG | + | chr3.3:65861534-65861553 | None:intergenic | 25.0% |
| ! | AAGGCAATAACTTTCTTAAA+AGG | + | chr3.3:65861480-65861499 | None:intergenic | 25.0% |
| ! | ATTTGTCTTAACAGTCATAA+TGG | + | chr3.3:65860835-65860854 | None:intergenic | 25.0% |
| ! | GTTTAGATTGTAATCTTTGA+TGG | + | chr3.3:65862243-65862262 | None:intergenic | 25.0% |
| ! | TCTATGAACTCATTCATTTA+GGG | - | chr3.3:65862276-65862295 | MS.gene25973:intron | 25.0% |
| ! | TGTATGTACTTAAGTTCATT+TGG | - | chr3.3:65862923-65862942 | MS.gene25973:CDS | 25.0% |
| ! | TTCTATGAACTCATTCATTT+AGG | - | chr3.3:65862275-65862294 | MS.gene25973:intron | 25.0% |
| ! | TTTGTCTTAACAGTCATAAT+GGG | + | chr3.3:65860834-65860853 | None:intergenic | 25.0% |
| !! | AAATTCAGATATTTTGTACG+AGG | - | chr3.3:65861007-65861026 | MS.gene25973:intron | 25.0% |
| !! | TAATCTTTGATGGTTAGAAA+TGG | + | chr3.3:65862233-65862252 | None:intergenic | 25.0% |
| !! | TACTGATTAAACTTCAATGA+TGG | - | chr3.3:65862063-65862082 | MS.gene25973:CDS | 25.0% |
| !!! | AAAACTCTAGAACTAAAGAA+TGG | + | chr3.3:65862843-65862862 | None:intergenic | 25.0% |
| !!! | TGATAATAAGGTTGATAATG+TGG | - | chr3.3:65861862-65861881 | MS.gene25973:CDS | 25.0% |
| !!! | TTTTTATGGTTTCTGAAACA+AGG | - | chr3.3:65861633-65861652 | MS.gene25973:CDS | 25.0% |
| AAAGTGAAAATACCATAGCA+TGG | + | chr3.3:65863013-65863032 | None:intergenic | 30.0% | |
| AAGTCAATTATACAATCCAC+TGG | + | chr3.3:65862134-65862153 | None:intergenic | 30.0% | |
| ACTTGTGAATAGATAAATGC+AGG | - | chr3.3:65862164-65862183 | MS.gene25973:intron | 30.0% | |
| AGACAAATACACAGAGTTAT+TGG | - | chr3.3:65860847-65860866 | MS.gene25973:CDS | 30.0% | |
| AGAGTTATTGGATTAATTGG+AGG | - | chr3.3:65860859-65860878 | MS.gene25973:CDS | 30.0% | |
| ATCAGACCAAGAGAAAAATT+TGG | - | chr3.3:65861943-65861962 | MS.gene25973:CDS | 30.0% | |
| CAACATCATAAGAAATCAAG+TGG | - | chr3.3:65861839-65861858 | MS.gene25973:intron | 30.0% | |
| CACAGAGTTATTGGATTAAT+TGG | - | chr3.3:65860856-65860875 | MS.gene25973:CDS | 30.0% | |
| CACTTGATTTCTTATGATGT+TGG | + | chr3.3:65861841-65861860 | None:intergenic | 30.0% | |
| CTATGAACTCATTCATTTAG+GGG | - | chr3.3:65862277-65862296 | MS.gene25973:intron | 30.0% | |
| GAAATCAAGTGGTGATAATA+AGG | - | chr3.3:65861850-65861869 | MS.gene25973:intron | 30.0% | |
| GAGTTATTGGATTAATTGGA+GGG | - | chr3.3:65860860-65860879 | MS.gene25973:CDS | 30.0% | |
| GCTGCAATATCAATCATAAA+AGG | + | chr3.3:65861787-65861806 | None:intergenic | 30.0% | |
| TATACTTACCCCAAAGTAAA+AGG | + | chr3.3:65861678-65861697 | None:intergenic | 30.0% | |
| TATGAACTCATTCATTTAGG+GGG | - | chr3.3:65862278-65862297 | MS.gene25973:intron | 30.0% | |
| TCAGACCAAGAGAAAAATTT+GGG | - | chr3.3:65861944-65861963 | MS.gene25973:CDS | 30.0% | |
| TCTAACACATTGATATGAGT+CGG | + | chr3.3:65863077-65863096 | None:intergenic | 30.0% | |
| TTAGCTTCATGAATGATGTA+AGG | + | chr3.3:65861499-65861518 | None:intergenic | 30.0% | |
| TTATGATTGATATTGCAGCT+AGG | - | chr3.3:65861788-65861807 | MS.gene25973:intron | 30.0% | |
| TTCCACTGTTTGTGTTTATA+TGG | - | chr3.3:65862484-65862503 | MS.gene25973:intron | 30.0% | |
| TTCCATATAAACACAAACAG+TGG | + | chr3.3:65862489-65862508 | None:intergenic | 30.0% | |
| TTGGAAGAACATTATGAATG+AGG | - | chr3.3:65861219-65861238 | MS.gene25973:intron | 30.0% | |
| ! | ATGCTATGGTATTTTCACTT+TGG | - | chr3.3:65863012-65863031 | MS.gene25973:CDS | 30.0% |
| ! | ATTGTCAATGTTGTTGTTGA+TGG | - | chr3.3:65861122-65861141 | MS.gene25973:CDS | 30.0% |
| ! | CTTCAATCACCTTTTACTTT+GGG | - | chr3.3:65861666-65861685 | MS.gene25973:CDS | 30.0% |
| ! | TGACATATGTGATTTTCCAA+TGG | - | chr3.3:65862583-65862602 | MS.gene25973:intron | 30.0% |
| ! | TGCTATGGTATTTTCACTTT+GGG | - | chr3.3:65863013-65863032 | MS.gene25973:CDS | 30.0% |
| ! | TTCAATCACCTTTTACTTTG+GGG | - | chr3.3:65861667-65861686 | MS.gene25973:CDS | 30.0% |
| ! | TTTTCTCATCATTGCTTCTA+TGG | - | chr3.3:65860919-65860938 | MS.gene25973:intron | 30.0% |
| !! | AATAAGGTTGATAATGTGGA+TGG | - | chr3.3:65861866-65861885 | MS.gene25973:CDS | 30.0% |
| !! | TGATACAGCTTTAAATTGTC+TGG | - | chr3.3:65862426-65862445 | MS.gene25973:intron | 30.0% |
| !! | TTACTTTGGGGTAAGTATAA+AGG | - | chr3.3:65861679-65861698 | MS.gene25973:CDS | 30.0% |
| !!! | ATCAATGCTATTTTCCTCAT+AGG | - | chr3.3:65862403-65862422 | MS.gene25973:intron | 30.0% |
| !!! | GTCTTCTTGTTTTGAAAAAC+AGG | - | chr3.3:65862707-65862726 | MS.gene25973:intron | 30.0% |
| !!! | TTCTTGTTTTGAAAAACAGG+TGG | - | chr3.3:65862710-65862729 | MS.gene25973:intron | 30.0% |
| AATCACAAGCCATAGAAAAC+AGG | + | chr3.3:65862953-65862972 | None:intergenic | 35.0% | |
| CTAACACATTGATATGAGTC+GGG | + | chr3.3:65863076-65863095 | None:intergenic | 35.0% | |
| CTGATGCATTAGAACTTTGT+GGG | + | chr3.3:65861928-65861947 | None:intergenic | 35.0% | |
| CTTAACTACAAAAGCAGAGA+GGG | + | chr3.3:65861399-65861418 | None:intergenic | 35.0% | |
| GACAAGTCAAGAAATGGATA+AGG | + | chr3.3:65862736-65862755 | None:intergenic | 35.0% | |
| GCAAGAGTTGAAATATTGTC+TGG | + | chr3.3:65861544-65861563 | None:intergenic | 35.0% | |
| GTCTCAACAAGAAATGTTAG+TGG | - | chr3.3:65860966-65860985 | MS.gene25973:intron | 35.0% | |
| TAACACATTGATATGAGTCG+GGG | + | chr3.3:65863075-65863094 | None:intergenic | 35.0% | |
| TCTGATGCATTAGAACTTTG+TGG | + | chr3.3:65861929-65861948 | None:intergenic | 35.0% | |
| TTAAAGCTGTATCACCTATG+AGG | + | chr3.3:65862420-65862439 | None:intergenic | 35.0% | |
| TTCATGCTTGCATTAATCTC+TGG | - | chr3.3:65862610-65862629 | MS.gene25973:intron | 35.0% | |
| TTGGCGAACAATAACTTCTT+CGG | + | chr3.3:65861975-65861994 | None:intergenic | 35.0% | |
| TTTGCAGAAGATGATGAGAA+TGG | + | chr3.3:65862794-65862813 | None:intergenic | 35.0% | |
| ! | ATGGCTTGTGATTGATTTCT+AGG | - | chr3.3:65862960-65862979 | MS.gene25973:CDS | 35.0% |
| ! | GAATGGGATACTTTTGCTTA+TGG | - | chr3.3:65862556-65862575 | MS.gene25973:intron | 35.0% |
| ! | GCTTCAATCACCTTTTACTT+TGG | - | chr3.3:65861665-65861684 | MS.gene25973:CDS | 35.0% |
| ! | GGGTGAATTCCTTTTAAACA+AGG | + | chr3.3:65861047-65861066 | None:intergenic | 35.0% |
| ! | TAGTATTCTTTTGTGGCAGT+TGG | - | chr3.3:65862363-65862382 | MS.gene25973:intron | 35.0% |
| ! | TTTCGCGTTTATTGTGCTTT+TGG | - | chr3.3:65861091-65861110 | MS.gene25973:intron | 35.0% |
| !! | TGCTCACTGATTGTGTATTT+TGG | - | chr3.3:65862195-65862214 | MS.gene25973:intron | 35.0% |
| !! | TTATGGTTTCTGAAACAAGG+TGG | - | chr3.3:65861636-65861655 | MS.gene25973:CDS | 35.0% |
| !! | TTTGGTGATCCTGTTTTCTA+TGG | - | chr3.3:65862941-65862960 | MS.gene25973:CDS | 35.0% |
| !!! | GGTTTTGCTTTGTGCTATTT+GGG | - | chr3.3:65860881-65860900 | MS.gene25973:CDS | 35.0% |
| AAGTATCCCATTCGAAACCA+AGG | + | chr3.3:65862549-65862568 | None:intergenic | 40.0% | |
| AGTATCCCATTCGAAACCAA+GGG | + | chr3.3:65862548-65862567 | None:intergenic | 40.0% | |
| CAAATGTTAGCTCAAACCAG+TGG | - | chr3.3:65862115-65862134 | MS.gene25973:intron | 40.0% | |
| CCTTAACTACAAAAGCAGAG+AGG | + | chr3.3:65861400-65861419 | None:intergenic | 40.0% | |
| GAGGATGACAAGTCAAGAAA+TGG | + | chr3.3:65862742-65862761 | None:intergenic | 40.0% | |
| GAGTAAAGTTCATACCAGAG+TGG | + | chr3.3:65862772-65862791 | None:intergenic | 40.0% | |
| TAATGTACCTTGCTAGCTGA+AGG | - | chr3.3:65861346-65861365 | MS.gene25973:intron | 40.0% | |
| TAGTGGAAGAGAAAGAGAAG+CGG | - | chr3.3:65860983-65861002 | MS.gene25973:intron | 40.0% | |
| TCATTTAGGGGGTTTCTCTT+GGG | - | chr3.3:65862289-65862308 | MS.gene25973:intron | 40.0% | |
| TGCAAGCATGAACAATCCAT+TGG | + | chr3.3:65862602-65862621 | None:intergenic | 40.0% | |
| TTACTGCACATTCCATGCTA+TGG | - | chr3.3:65862998-65863017 | MS.gene25973:CDS | 40.0% | |
| TTCATTTAGGGGGTTTCTCT+TGG | - | chr3.3:65862288-65862307 | MS.gene25973:intron | 40.0% | |
| TTTCTAACAGGCTCTCCTAA+AGG | - | chr3.3:65860798-65860817 | MS.gene25973:CDS | 40.0% | |
| ! | AGGCTCCCAAATTTTTCTCT+TGG | + | chr3.3:65861952-65861971 | None:intergenic | 40.0% |
| ! | GATTTCTAGGTACTTTGCTG+TGG | - | chr3.3:65862973-65862992 | MS.gene25973:CDS | 40.0% |
| ! | GTCAATGTTGTTGTTGATGG+AGG | - | chr3.3:65861125-65861144 | MS.gene25973:CDS | 40.0% |
| ! | TTTTGTACGAGGATGAAACC+TGG | - | chr3.3:65861018-65861037 | MS.gene25973:intron | 40.0% |
| !! | ATGTTGGTAACATCCATGCA+TGG | + | chr3.3:65861825-65861844 | None:intergenic | 40.0% |
| !! | CCTCTCTGCTTTTGTAGTTA+AGG | - | chr3.3:65861397-65861416 | MS.gene25973:intron | 40.0% |
| !! | GGGTTTTGCTTTGTGCTATT+TGG | - | chr3.3:65860880-65860899 | MS.gene25973:CDS | 40.0% |
| ATACCAGAGTGGAGCATATG+AGG | + | chr3.3:65862761-65862780 | None:intergenic | 45.0% | |
| ATGTGTTCCTTCAGCTAGCA+AGG | + | chr3.3:65861356-65861375 | None:intergenic | 45.0% | |
| ATTGATATGAGTCGGGGTAG+CGG | + | chr3.3:65863069-65863088 | None:intergenic | 45.0% | |
| CCTTTCCCTTGGTTTCGAAT+GGG | - | chr3.3:65862540-65862559 | MS.gene25973:intron | 45.0% | |
| GAAAGGCTGAAGAGAGCAAA+AGG | + | chr3.3:65862526-65862545 | None:intergenic | 45.0% | |
| GCGAACAATAACTTCTTCGG+AGG | + | chr3.3:65861972-65861991 | None:intergenic | 45.0% | |
| GGATCAATACTGTCCATGCA+TGG | - | chr3.3:65861809-65861828 | MS.gene25973:intron | 45.0% | |
| GTTATTGTTCGCCAACATGC+TGG | - | chr3.3:65861980-65861999 | MS.gene25973:CDS | 45.0% | |
| TAAAAGGAATTCACCCTGCC+TGG | - | chr3.3:65861051-65861070 | MS.gene25973:intron | 45.0% | |
| ! | TCCTTTTAAACAAGGCCTCC+AGG | + | chr3.3:65861039-65861058 | None:intergenic | 45.0% |
| !! | ACCTGGAGGCCTTGTTTAAA+AGG | - | chr3.3:65861035-65861054 | MS.gene25973:intron | 45.0% |
| AACCCCAAGTTCCAGCATGT+TGG | + | chr3.3:65861994-65862013 | None:intergenic | 50.0% | |
| AACCCGAAAAGCCAAAAGCC+AGG | + | chr3.3:65861072-65861091 | None:intergenic | 50.0% | |
| AGGCTCTCCTAAAGGCTCAT+GGG | - | chr3.3:65860806-65860825 | MS.gene25973:CDS | 50.0% | |
| ATGGGTTCCCATGAGCCTTT+AGG | + | chr3.3:65860816-65860835 | None:intergenic | 50.0% | |
| CATCCTCATATGCTCCACTC+TGG | - | chr3.3:65862755-65862774 | MS.gene25973:CDS | 50.0% | |
| CCCATTCGAAACCAAGGGAA+AGG | + | chr3.3:65862543-65862562 | None:intergenic | 50.0% | |
| GAAAAGCCAAAAGCCAGGCA+GGG | + | chr3.3:65861067-65861086 | None:intergenic | 50.0% | |
| GCCTTTCCCTTGGTTTCGAA+TGG | - | chr3.3:65862539-65862558 | MS.gene25973:intron | 50.0% | |
| TCGCCAACATGCTGGAACTT+GGG | - | chr3.3:65861988-65862007 | MS.gene25973:CDS | 50.0% | |
| TGTACGAGGATGAAACCTGG+AGG | - | chr3.3:65861021-65861040 | MS.gene25973:intron | 50.0% | |
| TTCGCCAACATGCTGGAACT+TGG | - | chr3.3:65861987-65862006 | MS.gene25973:CDS | 50.0% | |
| TTGATATGAGTCGGGGTAGC+GGG | + | chr3.3:65863068-65863087 | None:intergenic | 50.0% | |
| !! | AATTCACCCTGCCTGGCTTT+TGG | - | chr3.3:65861058-65861077 | MS.gene25973:intron | 50.0% |
| !!! | CTGCCTGGCTTTTGGCTTTT+CGG | - | chr3.3:65861066-65861085 | MS.gene25973:intron | 50.0% |
| !!! | TGCCTGGCTTTTGGCTTTTC+GGG | - | chr3.3:65861067-65861086 | MS.gene25973:intron | 50.0% |
| CAGGCTCTCCTAAAGGCTCA+TGG | - | chr3.3:65860805-65860824 | MS.gene25973:CDS | 55.0% | |
| CGAAAAGCCAAAAGCCAGGC+AGG | + | chr3.3:65861068-65861087 | None:intergenic | 55.0% | |
| CGCCAACATGCTGGAACTTG+GGG | - | chr3.3:65861989-65862008 | MS.gene25973:CDS | 55.0% | |
| GCTCTCTTCAGCCTTTCCCT+TGG | - | chr3.3:65862529-65862548 | MS.gene25973:intron | 55.0% | |
| GTGGATGGAGATGCAGAGCA+AGG | - | chr3.3:65861881-65861900 | MS.gene25973:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 65860792 | 65863099 | 65860792 | ID=MS.gene25973 |
| chr3.3 | mRNA | 65860792 | 65863099 | 65860792 | ID=MS.gene25973.t1;Parent=MS.gene25973 |
| chr3.3 | exon | 65862720 | 65863099 | 65862720 | ID=MS.gene25973.t1.exon1;Parent=MS.gene25973.t1 |
| chr3.3 | CDS | 65862720 | 65863099 | 65862720 | ID=cds.MS.gene25973.t1;Parent=MS.gene25973.t1 |
| chr3.3 | exon | 65862203 | 65862236 | 65862203 | ID=MS.gene25973.t1.exon2;Parent=MS.gene25973.t1 |
| chr3.3 | CDS | 65862203 | 65862236 | 65862203 | ID=cds.MS.gene25973.t1;Parent=MS.gene25973.t1 |
| chr3.3 | exon | 65861855 | 65862085 | 65861855 | ID=MS.gene25973.t1.exon3;Parent=MS.gene25973.t1 |
| chr3.3 | CDS | 65861855 | 65862085 | 65861855 | ID=cds.MS.gene25973.t1;Parent=MS.gene25973.t1 |
| chr3.3 | exon | 65861626 | 65861715 | 65861626 | ID=MS.gene25973.t1.exon4;Parent=MS.gene25973.t1 |
| chr3.3 | CDS | 65861626 | 65861715 | 65861626 | ID=cds.MS.gene25973.t1;Parent=MS.gene25973.t1 |
| chr3.3 | exon | 65861444 | 65861509 | 65861444 | ID=MS.gene25973.t1.exon5;Parent=MS.gene25973.t1 |
| chr3.3 | CDS | 65861444 | 65861509 | 65861444 | ID=cds.MS.gene25973.t1;Parent=MS.gene25973.t1 |
| chr3.3 | exon | 65861260 | 65861351 | 65861260 | ID=MS.gene25973.t1.exon6;Parent=MS.gene25973.t1 |
| chr3.3 | CDS | 65861260 | 65861351 | 65861260 | ID=cds.MS.gene25973.t1;Parent=MS.gene25973.t1 |
| chr3.3 | exon | 65861115 | 65861162 | 65861115 | ID=MS.gene25973.t1.exon7;Parent=MS.gene25973.t1 |
| chr3.3 | CDS | 65861115 | 65861162 | 65861115 | ID=cds.MS.gene25973.t1;Parent=MS.gene25973.t1 |
| chr3.3 | exon | 65860792 | 65860909 | 65860792 | ID=MS.gene25973.t1.exon8;Parent=MS.gene25973.t1 |
| chr3.3 | CDS | 65860792 | 65860909 | 65860792 | ID=cds.MS.gene25973.t1;Parent=MS.gene25973.t1 |
| Gene Sequence |
| Protein sequence |
