Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26225.t1 | AES99055.1 | 99.5 | 205 | 1 | 0 | 1 | 205 | 50 | 254 | 5.20E-109 | 403.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26225.t1 | Q9LEV3 | 82.0 | 206 | 36 | 1 | 1 | 205 | 1 | 206 | 1.0e-92 | 340.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26225.t1 | G7K5X3 | 99.5 | 205 | 1 | 0 | 1 | 205 | 50 | 254 | 3.7e-109 | 403.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene47429 | MS.gene26225 | PPI |
| MS.gene029745 | MS.gene26225 | PPI |
| MS.gene065401 | MS.gene26225 | PPI |
| MS.gene26225 | MS.gene051416 | PPI |
| MS.gene065402 | MS.gene26225 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26225.t1 | MTR_5g076080 | 99.512 | 205 | 1 | 0 | 1 | 205 | 50 | 254 | 8.24e-153 | 424 |
| MS.gene26225.t1 | MTR_5g076080 | 99.512 | 205 | 1 | 0 | 1 | 205 | 1 | 205 | 7.41e-152 | 419 |
| MS.gene26225.t1 | MTR_5g076010 | 91.597 | 119 | 10 | 0 | 1 | 119 | 1 | 119 | 2.49e-70 | 224 |
| MS.gene26225.t1 | MTR_3g111940 | 48.309 | 207 | 102 | 4 | 1 | 205 | 1 | 204 | 1.20e-57 | 181 |
| MS.gene26225.t1 | MTR_6g037360 | 84.375 | 96 | 15 | 0 | 1 | 96 | 1 | 96 | 9.05e-55 | 170 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26225.t1 | AT5G10860 | 82.039 | 206 | 36 | 1 | 1 | 205 | 1 | 206 | 9.13e-126 | 353 |
| MS.gene26225.t1 | AT1G47271 | 47.594 | 187 | 96 | 2 | 19 | 205 | 8 | 192 | 1.98e-56 | 177 |
Find 65 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCGCAGAACTTTGGTATC+AGG | 0.270882 | 5.4:-58283396 | None:intergenic |
| ATCCCCGACCTTGGTGGACT+TGG | 0.359346 | 5.4:-58283037 | None:intergenic |
| CCTGAGGAAGATCATCGTTC+AGG | 0.387541 | 5.4:+58283005 | MS.gene26225:CDS |
| AAAAGGCAACTGGCTGCAAC+AGG | 0.388839 | 5.4:-58282338 | None:intergenic |
| GCAATTGATTTCTCCTCCCC+TGG | 0.398515 | 5.4:-58282641 | None:intergenic |
| GCGCTGATGGTTCATGGCTT+TGG | 0.403537 | 5.4:+58282451 | MS.gene26225:CDS |
| CGCTTGAATGCTTACATACA+AGG | 0.428996 | 5.4:+58283892 | MS.gene26225:CDS |
| TCAGACATCTTGCAAGGAAA+AGG | 0.429987 | 5.4:+58282423 | MS.gene26225:CDS |
| CATCCAAGTCCACCAAGGTC+GGG | 0.437806 | 5.4:+58283034 | MS.gene26225:CDS |
| GATGTTGTTCGTGCTGTTGT+GGG | 0.443442 | 5.4:+58283847 | MS.gene26225:CDS |
| GTAAAGGCGCTGATGGTTCA+TGG | 0.444659 | 5.4:+58282445 | MS.gene26225:CDS |
| CTGCATTGCTCGCAGAACTT+TGG | 0.445326 | 5.4:-58283403 | None:intergenic |
| GGGGAGGAGAAATCAATTGC+TGG | 0.452072 | 5.4:+58282644 | MS.gene26225:CDS |
| ACAAAACAATGTTGGTGCTT+TGG | 0.467003 | 5.4:+58282607 | MS.gene26225:CDS |
| ATTCCCTTGTCATTTATGAC+AGG | 0.472651 | 5.4:-58283802 | None:intergenic |
| TCAAACCGTGAAAAGGCAAC+TGG | 0.475093 | 5.4:-58282348 | None:intergenic |
| TGTTTATGATGCTGTCAAAT+CGG | 0.475200 | 5.4:+58282491 | MS.gene26225:CDS |
| GCTTTGGTGGTCGTGAAACC+AGG | 0.480001 | 5.4:+58282623 | MS.gene26225:CDS |
| CGAGCAATGCAGCTGATGAC+TGG | 0.490351 | 5.4:+58283414 | MS.gene26225:CDS |
| CTCGCAGAACTTTGGTATCA+GGG | 0.492406 | 5.4:-58283395 | None:intergenic |
| CATAATATCCCCGACCTTGG+TGG | 0.492904 | 5.4:-58283043 | None:intergenic |
| TGCTACACCTGCTCGTATTG+AGG | 0.498372 | 5.4:+58282374 | MS.gene26225:CDS |
| AGATGTTGTTCGTGCTGTTG+TGG | 0.516829 | 5.4:+58283846 | MS.gene26225:CDS |
| GCTGGAATTATAACAGAAAG+AGG | 0.519325 | 5.4:+58282662 | MS.gene26225:CDS |
| CTGAGGAAGATCATCGTTCA+GGG | 0.519832 | 5.4:+58283006 | MS.gene26225:CDS |
| ATGCTCGGCATGGTGTCCAT+TGG | 0.523216 | 5.4:+58283823 | MS.gene26225:CDS |
| AGCAGACTCAAACCGTGAAA+AGG | 0.527310 | 5.4:-58282355 | None:intergenic |
| AACAGTGGTTCATACCTCTT+CGG | 0.527383 | 5.4:-58283067 | None:intergenic |
| AAGGCAACTGGCTGCAACAG+GGG | 0.531751 | 5.4:-58282336 | None:intergenic |
| CCTGAACGATGATCTTCCTC+AGG | 0.533196 | 5.4:-58283005 | None:intergenic |
| TCATCCAAGTCCACCAAGGT+CGG | 0.552655 | 5.4:+58283033 | MS.gene26225:CDS |
| ATCCAAGTCCACCAAGGTCG+GGG | 0.557202 | 5.4:+58283035 | MS.gene26225:CDS |
| AAACAATGTTGGTGCTTTGG+TGG | 0.560729 | 5.4:+58282610 | MS.gene26225:CDS |
| ATCTTGCAAGGAAAAGGTAA+AGG | 0.561654 | 5.4:+58282429 | MS.gene26225:CDS |
| GGAAAAGGTAAAGGCGCTGA+TGG | 0.566636 | 5.4:+58282438 | MS.gene26225:CDS |
| TTCCCTTGTCATTTATGACA+GGG | 0.568159 | 5.4:-58283801 | None:intergenic |
| TTGCAAGATGTCTGAAATTG+TGG | 0.570234 | 5.4:-58282415 | None:intergenic |
| ATAAATGACAAGGGAATGCT+CGG | 0.572093 | 5.4:+58283808 | MS.gene26225:CDS |
| CCATGCTCCTCAATACGAGC+AGG | 0.573052 | 5.4:-58282381 | None:intergenic |
| GGTCATAATATCCCCGACCT+TGG | 0.574226 | 5.4:-58283046 | None:intergenic |
| ATGTTGTTCGTGCTGTTGTG+GGG | 0.574759 | 5.4:+58283848 | MS.gene26225:CDS |
| ACAATTTCAGACATCTTGCA+AGG | 0.588745 | 5.4:+58282417 | MS.gene26225:CDS |
| CTTTGGTGGTCGTGAAACCA+GGG | 0.598133 | 5.4:+58282624 | MS.gene26225:CDS |
| AGCACGAACAACATCTCCAA+TGG | 0.603380 | 5.4:-58283839 | None:intergenic |
| CATCCCTGTCATAAATGACA+AGG | 0.606441 | 5.4:+58283798 | MS.gene26225:CDS |
| TATTAGACAGCCAAAATGCA+AGG | 0.612518 | 5.4:+58282240 | None:intergenic |
| CCTGCTCGTATTGAGGAGCA+TGG | 0.625826 | 5.4:+58282381 | MS.gene26225:CDS |
| ATCATAAACAGTGTCATCTG+TGG | 0.626836 | 5.4:-58282478 | None:intergenic |
| TGTTGTTCGTGCTGTTGTGG+GGG | 0.626951 | 5.4:+58283849 | MS.gene26225:CDS |
| TGACAAGGGAATGCTCGGCA+TGG | 0.629614 | 5.4:+58283813 | MS.gene26225:CDS |
| CAGATGACACAAAACAATGT+TGG | 0.632418 | 5.4:+58282599 | MS.gene26225:intron |
| GCTTGAATGCTTACATACAA+GGG | 0.636806 | 5.4:+58283893 | MS.gene26225:CDS |
| CTTGAATGCTTACATACAAG+GGG | 0.645653 | 5.4:+58283894 | MS.gene26225:CDS |
| TCGCAGAACTTTGGTATCAG+GGG | 0.648663 | 5.4:-58283394 | None:intergenic |
| CTTGTATGTAAGCATTCAAG+CGG | 0.650554 | 5.4:-58283891 | None:intergenic |
| AAAGGCAACTGGCTGCAACA+GGG | 0.653192 | 5.4:-58282337 | None:intergenic |
| CTTGATATCTAGATTACCTG+AGG | 0.657138 | 5.4:+58282989 | MS.gene26225:intron |
| CGGGGATATTATGACCGAAG+AGG | 0.658203 | 5.4:+58283053 | MS.gene26225:CDS |
| ATCCCTGTCATAAATGACAA+GGG | 0.675254 | 5.4:+58283799 | MS.gene26225:CDS |
| GCAACAGGGGATTCACCATG+CGG | 0.686296 | 5.4:-58282323 | None:intergenic |
| GGTGGTCGTGAAACCAGGGG+AGG | 0.700076 | 5.4:+58282628 | MS.gene26225:CDS |
| TTTGGTGGTCGTGAAACCAG+GGG | 0.702988 | 5.4:+58282625 | MS.gene26225:CDS |
| AAGATCATCCAAGTCCACCA+AGG | 0.706227 | 5.4:+58283029 | MS.gene26225:CDS |
| TAGACAGCCAAAATGCAAGG+AGG | 0.707266 | 5.4:+58282243 | None:intergenic |
| TTGAATGCTTACATACAAGG+GGG | 0.750705 | 5.4:+58283895 | MS.gene26225:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAACAATATGATTTATAT+TGG | + | chr5.4:58282809-58282828 | MS.gene26225:intron | 15.0% |
| !! | ACAAATAATATTTGCCAATT+TGG | - | chr5.4:58283202-58283221 | None:intergenic | 20.0% |
| !! | ACGTTAATGACAAATATAAT+TGG | - | chr5.4:58282953-58282972 | None:intergenic | 20.0% |
| !! | TTATCTGGAAGAAAAAAAAA+TGG | - | chr5.4:58283766-58283785 | None:intergenic | 20.0% |
| !!! | TGTTTGATATTTCTATCTAA+AGG | - | chr5.4:58283460-58283479 | None:intergenic | 20.0% |
| ! | AATAAGCAGATAACAACTTA+TGG | + | chr5.4:58283656-58283675 | MS.gene26225:intron | 25.0% |
| ! | AATAGTCAAATAAGTAACAG+TGG | - | chr5.4:58283085-58283104 | None:intergenic | 25.0% |
| ! | ACAACTCAACATCTTAAATA+AGG | + | chr5.4:58283514-58283533 | MS.gene26225:intron | 25.0% |
| ! | ATGACAAATATAATTGGAAG+TGG | - | chr5.4:58282947-58282966 | None:intergenic | 25.0% |
| ! | ATTTGTATAGCACAAAATGT+AGG | - | chr5.4:58283137-58283156 | None:intergenic | 25.0% |
| ! | TATATACTTGCAATACTGTT+TGG | - | chr5.4:58283699-58283718 | None:intergenic | 25.0% |
| !!! | CTGGTATTGATATGTTTTTT+CGG | + | chr5.4:58283433-58283452 | MS.gene26225:intron | 25.0% |
| !!! | TTTTTTTTCTTCCAGATAAC+AGG | + | chr5.4:58283767-58283786 | MS.gene26225:intron | 25.0% |
| AAGCTATCATGAAGAACTTA+TGG | + | chr5.4:58283632-58283651 | MS.gene26225:intron | 30.0% | |
| ATAATATTTGCCAATTTGGC+AGG | - | chr5.4:58283198-58283217 | None:intergenic | 30.0% | |
| CATTATGACATGTCAGTTAA+TGG | - | chr5.4:58282864-58282883 | None:intergenic | 30.0% | |
| GAAATAACTGCATGAACATT+TGG | - | chr5.4:58282690-58282709 | None:intergenic | 30.0% | |
| TAATATTTGCCAATTTGGCA+GGG | - | chr5.4:58283197-58283216 | None:intergenic | 30.0% | |
| TCAAATAAACCAATCCAAAC+AGG | + | chr5.4:58283720-58283739 | MS.gene26225:intron | 30.0% | |
| TCAAGCTATTAATCCAAACA+AGG | - | chr5.4:58283562-58283581 | None:intergenic | 30.0% | |
| TGGTTATCTTCACATGATAT+TGG | + | chr5.4:58282744-58282763 | MS.gene26225:intron | 30.0% | |
| TGTTTATGATGCTGTCAAAT+CGG | + | chr5.4:58282491-58282510 | MS.gene26225:CDS | 30.0% | |
| TTAACTGACATGTCATAATG+TGG | + | chr5.4:58282864-58282883 | MS.gene26225:intron | 30.0% | |
| TTGATATTGCCTATTAAGCA+GGG | + | chr5.4:58283256-58283275 | MS.gene26225:intron | 30.0% | |
| ! | TTAATGGATCTCAGGTTATT+AGG | - | chr5.4:58282848-58282867 | None:intergenic | 30.0% |
| !! | GTTCATGCAGTTATTTCTTT+GGG | + | chr5.4:58282693-58282712 | MS.gene26225:intron | 30.0% |
| !! | GTTTGTAGTTTGTTGTGTAA+TGG | + | chr5.4:58282715-58282734 | MS.gene26225:intron | 30.0% |
| !! | TGTTCATGCAGTTATTTCTT+TGG | + | chr5.4:58282692-58282711 | MS.gene26225:intron | 30.0% |
| !! | TTGCGATCATTTTTGTCAAA+CGG | + | chr5.4:58282267-58282286 | MS.gene26225:CDS | 30.0% |
| !! | TTGTTGTGTAATGGATAACT+TGG | + | chr5.4:58282724-58282743 | MS.gene26225:intron | 30.0% |
| AATATTTGCCAATTTGGCAG+GGG | - | chr5.4:58283196-58283215 | None:intergenic | 35.0% | |
| ACAATTTCAGACATCTTGCA+AGG | + | chr5.4:58282417-58282436 | MS.gene26225:CDS | 35.0% | |
| ATAAATGACAAGGGAATGCT+CGG | + | chr5.4:58283808-58283827 | MS.gene26225:CDS | 35.0% | |
| ATCATAAACAGTGTCATCTG+TGG | - | chr5.4:58282481-58282500 | None:intergenic | 35.0% | |
| ATCCCTGTCATAAATGACAA+GGG | + | chr5.4:58283799-58283818 | MS.gene26225:CDS | 35.0% | |
| ATCTTGCAAGGAAAAGGTAA+AGG | + | chr5.4:58282429-58282448 | MS.gene26225:CDS | 35.0% | |
| CAGATGACACAAAACAATGT+TGG | + | chr5.4:58282599-58282618 | MS.gene26225:intron | 35.0% | |
| CTTGAATGCTTACATACAAG+GGG | + | chr5.4:58283894-58283913 | MS.gene26225:CDS | 35.0% | |
| CTTGATATCTAGATTACCTG+AGG | + | chr5.4:58282989-58283008 | MS.gene26225:intron | 35.0% | |
| CTTGTATGTAAGCATTCAAG+CGG | - | chr5.4:58283894-58283913 | None:intergenic | 35.0% | |
| GAATAAGAACCTGTTTGGAT+TGG | - | chr5.4:58283732-58283751 | None:intergenic | 35.0% | |
| GACTAGAATAAGAACCTGTT+TGG | - | chr5.4:58283737-58283756 | None:intergenic | 35.0% | |
| GCTGGAATTATAACAGAAAG+AGG | + | chr5.4:58282662-58282681 | MS.gene26225:CDS | 35.0% | |
| GCTTGAATGCTTACATACAA+GGG | + | chr5.4:58283893-58283912 | MS.gene26225:CDS | 35.0% | |
| GTTGATATTGCCTATTAAGC+AGG | + | chr5.4:58283255-58283274 | MS.gene26225:intron | 35.0% | |
| GTTGTAGCATGTTTCACTAT+AGG | + | chr5.4:58283536-58283555 | MS.gene26225:intron | 35.0% | |
| TTGAATGCTTACATACAAGG+GGG | + | chr5.4:58283895-58283914 | MS.gene26225:CDS | 35.0% | |
| ! | ACAAAACAATGTTGGTGCTT+TGG | + | chr5.4:58282607-58282626 | MS.gene26225:CDS | 35.0% |
| ! | ATTCCCTTGTCATTTATGAC+AGG | - | chr5.4:58283805-58283824 | None:intergenic | 35.0% |
| ! | TGCATGCTTTTGTCAATATG+CGG | + | chr5.4:58282898-58282917 | MS.gene26225:intron | 35.0% |
| ! | TTCCCTTGTCATTTATGACA+GGG | - | chr5.4:58283804-58283823 | None:intergenic | 35.0% |
| ! | TTGCAAGATGTCTGAAATTG+TGG | - | chr5.4:58282418-58282437 | None:intergenic | 35.0% |
| !! | GATATTGGCTTACATCAAAC+TGG | + | chr5.4:58282759-58282778 | MS.gene26225:intron | 35.0% |
| !! | TGCGATCATTTTTGTCAAAC+GGG | + | chr5.4:58282268-58282287 | MS.gene26225:CDS | 35.0% |
| AACAGTGGTTCATACCTCTT+CGG | - | chr5.4:58283070-58283089 | None:intergenic | 40.0% | |
| ACCAGTAATTAGGGCAACAT+AGG | + | chr5.4:58283280-58283299 | MS.gene26225:intron | 40.0% | |
| ACTGACATGTCATAATGTGG+TGG | + | chr5.4:58282867-58282886 | MS.gene26225:intron | 40.0% | |
| ATGTGTCTGATCCTGTTATC+TGG | - | chr5.4:58283781-58283800 | None:intergenic | 40.0% | |
| CATCCCTGTCATAAATGACA+AGG | + | chr5.4:58283798-58283817 | MS.gene26225:CDS | 40.0% | |
| CGCTTGAATGCTTACATACA+AGG | + | chr5.4:58283892-58283911 | MS.gene26225:CDS | 40.0% | |
| CTGTATGCAAAGTTCAGCAA+TGG | + | chr5.4:58283233-58283252 | MS.gene26225:intron | 40.0% | |
| GCACACGACACATTCAAATT+TGG | - | chr5.4:58282785-58282804 | None:intergenic | 40.0% | |
| TCAGACATCTTGCAAGGAAA+AGG | + | chr5.4:58282423-58282442 | MS.gene26225:CDS | 40.0% | |
| TCCTATGTTGCCCTAATTAC+TGG | - | chr5.4:58283284-58283303 | None:intergenic | 40.0% | |
| TTACTGGTACCCTGCTTAAT+AGG | - | chr5.4:58283268-58283287 | None:intergenic | 40.0% | |
| ! | AAACAATGTTGGTGCTTTGG+TGG | + | chr5.4:58282610-58282629 | MS.gene26225:CDS | 40.0% |
| ! | AAGCAGGGTACCAGTAATTA+GGG | + | chr5.4:58283271-58283290 | MS.gene26225:intron | 40.0% |
| ! | CATGTCAGTTAATGGATCTC+AGG | - | chr5.4:58282856-58282875 | None:intergenic | 40.0% |
| ! | TAAGCAGGGTACCAGTAATT+AGG | + | chr5.4:58283270-58283289 | MS.gene26225:intron | 40.0% |
| !! | GTTTCACTATAGGCCTTGTT+TGG | + | chr5.4:58283546-58283565 | MS.gene26225:intron | 40.0% |
| AAGATCATCCAAGTCCACCA+AGG | + | chr5.4:58283029-58283048 | MS.gene26225:CDS | 45.0% | |
| AGCACGAACAACATCTCCAA+TGG | - | chr5.4:58283842-58283861 | None:intergenic | 45.0% | |
| AGCAGACTCAAACCGTGAAA+AGG | - | chr5.4:58282358-58282377 | None:intergenic | 45.0% | |
| CTCGCAGAACTTTGGTATCA+GGG | - | chr5.4:58283398-58283417 | None:intergenic | 45.0% | |
| CTGAGGAAGATCATCGTTCA+GGG | + | chr5.4:58283006-58283025 | MS.gene26225:CDS | 45.0% | |
| GACATGTCATAATGTGGTGG+AGG | + | chr5.4:58282870-58282889 | MS.gene26225:intron | 45.0% | |
| TCAAACCGTGAAAAGGCAAC+TGG | - | chr5.4:58282351-58282370 | None:intergenic | 45.0% | |
| TCGCAGAACTTTGGTATCAG+GGG | - | chr5.4:58283397-58283416 | None:intergenic | 45.0% | |
| ! | AGATGTTGTTCGTGCTGTTG+TGG | + | chr5.4:58283846-58283865 | MS.gene26225:CDS | 45.0% |
| ! | ATGTTGTTCGTGCTGTTGTG+GGG | + | chr5.4:58283848-58283867 | MS.gene26225:CDS | 45.0% |
| ! | GATGTTGTTCGTGCTGTTGT+GGG | + | chr5.4:58283847-58283866 | MS.gene26225:CDS | 45.0% |
| AAAAGGCAACTGGCTGCAAC+AGG | - | chr5.4:58282341-58282360 | None:intergenic | 50.0% | |
| AAAGGCAACTGGCTGCAACA+GGG | - | chr5.4:58282340-58282359 | None:intergenic | 50.0% | |
| CATAATATCCCCGACCTTGG+TGG | - | chr5.4:58283046-58283065 | None:intergenic | 50.0% | |
| CCTGAACGATGATCTTCCTC+AGG | - | chr5.4:58283008-58283027 | None:intergenic | 50.0% | |
| CCTGAGGAAGATCATCGTTC+AGG | + | chr5.4:58283005-58283024 | MS.gene26225:CDS | 50.0% | |
| CGGGGATATTATGACCGAAG+AGG | + | chr5.4:58283053-58283072 | MS.gene26225:CDS | 50.0% | |
| CTGCATTGCTCGCAGAACTT+TGG | - | chr5.4:58283406-58283425 | None:intergenic | 50.0% | |
| GCTCGCAGAACTTTGGTATC+AGG | - | chr5.4:58283399-58283418 | None:intergenic | 50.0% | |
| GGGGAGGAGAAATCAATTGC+TGG | + | chr5.4:58282644-58282663 | MS.gene26225:CDS | 50.0% | |
| GGTCATAATATCCCCGACCT+TGG | - | chr5.4:58283049-58283068 | None:intergenic | 50.0% | |
| TCATCCAAGTCCACCAAGGT+CGG | + | chr5.4:58283033-58283052 | MS.gene26225:CDS | 50.0% | |
| TGCTACACCTGCTCGTATTG+AGG | + | chr5.4:58282374-58282393 | MS.gene26225:CDS | 50.0% | |
| ! | CTTTGGTGGTCGTGAAACCA+GGG | + | chr5.4:58282624-58282643 | MS.gene26225:CDS | 50.0% |
| ! | GCAATTGATTTCTCCTCCCC+TGG | - | chr5.4:58282644-58282663 | None:intergenic | 50.0% |
| ! | TGCAGCCAGTTGCCTTTTCA+CGG | + | chr5.4:58282343-58282362 | MS.gene26225:CDS | 50.0% |
| ! | TGTTGTTCGTGCTGTTGTGG+GGG | + | chr5.4:58283849-58283868 | MS.gene26225:CDS | 50.0% |
| ! | TGTTTTGCAACGAGTCCGCA+TGG | + | chr5.4:58282308-58282327 | MS.gene26225:CDS | 50.0% |
| ! | TTTGGTGGTCGTGAAACCAG+GGG | + | chr5.4:58282625-58282644 | MS.gene26225:CDS | 50.0% |
| !! | GGAAAAGGTAAAGGCGCTGA+TGG | + | chr5.4:58282438-58282457 | MS.gene26225:CDS | 50.0% |
| !! | GTAAAGGCGCTGATGGTTCA+TGG | + | chr5.4:58282445-58282464 | MS.gene26225:CDS | 50.0% |
| AAGGCAACTGGCTGCAACAG+GGG | - | chr5.4:58282339-58282358 | None:intergenic | 55.0% | |
| ATCCAAGTCCACCAAGGTCG+GGG | + | chr5.4:58283035-58283054 | MS.gene26225:CDS | 55.0% | |
| ATGCTCGGCATGGTGTCCAT+TGG | + | chr5.4:58283823-58283842 | MS.gene26225:CDS | 55.0% | |
| CATCCAAGTCCACCAAGGTC+GGG | + | chr5.4:58283034-58283053 | MS.gene26225:CDS | 55.0% | |
| CCATGCTCCTCAATACGAGC+AGG | - | chr5.4:58282384-58282403 | None:intergenic | 55.0% | |
| CCTGCTCGTATTGAGGAGCA+TGG | + | chr5.4:58282381-58282400 | MS.gene26225:CDS | 55.0% | |
| CGAGCAATGCAGCTGATGAC+TGG | + | chr5.4:58283414-58283433 | MS.gene26225:CDS | 55.0% | |
| GCAACAGGGGATTCACCATG+CGG | - | chr5.4:58282326-58282345 | None:intergenic | 55.0% | |
| TGACAAGGGAATGCTCGGCA+TGG | + | chr5.4:58283813-58283832 | MS.gene26225:CDS | 55.0% | |
| ! | GCGCTGATGGTTCATGGCTT+TGG | + | chr5.4:58282451-58282470 | MS.gene26225:CDS | 55.0% |
| ! | GCTTTGGTGGTCGTGAAACC+AGG | + | chr5.4:58282623-58282642 | MS.gene26225:CDS | 55.0% |
| CAGCGATGCCCCTGCCAAAT+TGG | + | chr5.4:58283185-58283204 | MS.gene26225:intron | 60.0% | |
| !! | ATCCCCGACCTTGGTGGACT+TGG | - | chr5.4:58283040-58283059 | None:intergenic | 60.0% |
| GGTGGTCGTGAAACCAGGGG+AGG | + | chr5.4:58282628-58282647 | MS.gene26225:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 58282255 | 58283924 | 58282255 | ID=MS.gene26225 |
| chr5.4 | mRNA | 58282255 | 58283924 | 58282255 | ID=MS.gene26225.t1;Parent=MS.gene26225 |
| chr5.4 | exon | 58282255 | 58282512 | 58282255 | ID=MS.gene26225.t1.exon1;Parent=MS.gene26225.t1 |
| chr5.4 | CDS | 58282255 | 58282512 | 58282255 | ID=cds.MS.gene26225.t1;Parent=MS.gene26225.t1 |
| chr5.4 | exon | 58282602 | 58282683 | 58282602 | ID=MS.gene26225.t1.exon2;Parent=MS.gene26225.t1 |
| chr5.4 | CDS | 58282602 | 58282683 | 58282602 | ID=cds.MS.gene26225.t1;Parent=MS.gene26225.t1 |
| chr5.4 | exon | 58283001 | 58283074 | 58283001 | ID=MS.gene26225.t1.exon3;Parent=MS.gene26225.t1 |
| chr5.4 | CDS | 58283001 | 58283074 | 58283001 | ID=cds.MS.gene26225.t1;Parent=MS.gene26225.t1 |
| chr5.4 | exon | 58283375 | 58283435 | 58283375 | ID=MS.gene26225.t1.exon4;Parent=MS.gene26225.t1 |
| chr5.4 | CDS | 58283375 | 58283435 | 58283375 | ID=cds.MS.gene26225.t1;Parent=MS.gene26225.t1 |
| chr5.4 | exon | 58283782 | 58283924 | 58283782 | ID=MS.gene26225.t1.exon5;Parent=MS.gene26225.t1 |
| chr5.4 | CDS | 58283782 | 58283924 | 58283782 | ID=cds.MS.gene26225.t1;Parent=MS.gene26225.t1 |
| Gene Sequence |
| Protein sequence |
