AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene26799

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26799.t1 MTR_7g096570 95.652 138 6 0 1 138 1 138 4.48e-90 258
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26799.t1 AT1G48160 68.468 111 35 0 1 111 1 111 6.72e-56 171
MS.gene26799.t1 AT1G48160 68.468 111 35 0 1 111 1 111 6.72e-56 171

Find 31 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACCCTACTTGTCTTGAAAT+TGG 0.153966 8.2:+10416762 MS.gene26799:CDS
TGGTCCTTCCATGGTGTTTA+GGG 0.204157 8.2:-10419127 None:intergenic
TTGGTCCTTCCATGGTGTTT+AGG 0.258012 8.2:-10419128 None:intergenic
TGGTGCAGTCTCCTGCTTCT+TGG 0.286321 8.2:-10419147 None:intergenic
ACCCTACTTGTCTTGAAATT+GGG 0.308703 8.2:+10416763 MS.gene26799:CDS
GCTGGACCTTCCAACAAATC+TGG 0.347799 8.2:+10419185 MS.gene26799:CDS
TCCACCTTTCCCAGATTTGT+TGG 0.371350 8.2:-10419195 None:intergenic
CCAGCAGTTGCAGTTGTTGT+TGG 0.411328 8.2:-10419167 None:intergenic
CCTGCTTCTTGGTCCTTCCA+TGG 0.417818 8.2:-10419136 None:intergenic
ACGATCCACTTCTTTATGCT+TGG 0.447336 8.2:-10416663 None:intergenic
CCTTTCCCAGATTTGTTGGA+AGG 0.448852 8.2:-10419191 None:intergenic
CCCTACTTGTCTTGAAATTG+GGG 0.455560 8.2:+10416764 MS.gene26799:CDS
CCAACAACAACTGCAACTGC+TGG 0.478541 8.2:+10419167 MS.gene26799:CDS
CTGGACCTTCCAACAAATCT+GGG 0.500340 8.2:+10419186 MS.gene26799:CDS
CCCCAATTTCAAGACAAGTA+GGG 0.509580 8.2:-10416764 None:intergenic
TAATTAACCTCGATTGCAAA+AGG 0.520958 8.2:-10416810 None:intergenic
CCATGGAAGGACCAAGAAGC+AGG 0.522661 8.2:+10419136 MS.gene26799:CDS
AATGTTACGCGTTGCAGAGA+TGG 0.526719 8.2:+10419103 MS.gene26799:CDS
TTCTGACATTGTAAGATGGA+AGG 0.527164 8.2:+10416633 None:intergenic
TCCCCAATTTCAAGACAAGT+AGG 0.528619 8.2:-10416765 None:intergenic
GTTGCTGAAGGAAGACGAAT+CGG 0.531220 8.2:+10416720 MS.gene26799:CDS
AACTTACTCGAAGCTATGGA+TGG 0.559095 8.2:-10416996 None:intergenic
CCTCGTGATTTCATGCAAAG+AGG 0.566493 8.2:+10416927 MS.gene26799:CDS
TCCAACAAATCTGGGAAAGG+TGG 0.573312 8.2:+10419194 MS.gene26799:CDS
CCTTCCAACAAATCTGGGAA+AGG 0.605602 8.2:+10419191 MS.gene26799:CDS
AATTACCAAGCATAAAGAAG+TGG 0.608084 8.2:+10416658 MS.gene26799:CDS
TTGTTGATCACAGCTTGACA+AGG 0.618583 8.2:+10416899 MS.gene26799:intron
TGGTCCCTAAACACCATGGA+AGG 0.619588 8.2:+10419123 MS.gene26799:CDS
CCTCTTTGCATGAAATCACG+AGG 0.620436 8.2:-10416927 None:intergenic
GAGATGGTCCCTAAACACCA+TGG 0.690946 8.2:+10419119 MS.gene26799:CDS
CTCTTTGCATGAAATCACGA+GGG 0.694337 8.2:-10416926 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATATATTGTTATAAAGA+CGG - chr8.2:10418793-10418812 None:intergenic 10.0%
!! ATATAAAAAAAATATGTTTC+GGG + chr8.2:10417349-10417368 MS.gene26799:intron 10.0%
!! CATATAAAAAAAATATGTTT+CGG + chr8.2:10417348-10417367 MS.gene26799:intron 10.0%
!!! AATATTTTCAAAATGATATT+TGG + chr8.2:10418752-10418771 MS.gene26799:intron 10.0%
!!! ACATATTTTTTTTATATGTT+AGG - chr8.2:10417346-10417365 None:intergenic 10.0%
!!! TACTTTTATGTTAAATAAAA+TGG - chr8.2:10417978-10417997 None:intergenic 10.0%
!!! TCACAAAAAATTTAAATTTT+GGG + chr8.2:10417139-10417158 MS.gene26799:intron 10.0%
!!! TTCACAAAAAATTTAAATTT+TGG + chr8.2:10417138-10417157 MS.gene26799:intron 10.0%
!!! TTTTATTTTCTAGAAATTAT+AGG + chr8.2:10418690-10418709 MS.gene26799:intron 10.0%
!! ATATATATTGTTATAAAGAC+GGG - chr8.2:10418792-10418811 None:intergenic 15.0%
!! TTAGGATATAGATTTATAAA+GGG - chr8.2:10418224-10418243 None:intergenic 15.0%
!! TTTCCTATTTAAATAGAATT+TGG - chr8.2:10418822-10418841 None:intergenic 15.0%
!! AATCCTTAAAAATTTGAACA+GGG - chr8.2:10417120-10417139 None:intergenic 20.0%
!! AATGGTAAAGGTTAAAAAAT+GGG + chr8.2:10418457-10418476 MS.gene26799:intron 20.0%
!! ATAGGAACTACATATATATT+TGG + chr8.2:10418165-10418184 MS.gene26799:intron 20.0%
!! CTACCAAATTCTATTTAAAT+AGG + chr8.2:10418816-10418835 MS.gene26799:intron 20.0%
!! CTTAGGATATAGATTTATAA+AGG - chr8.2:10418225-10418244 None:intergenic 20.0%
!!! ATTTCATTTCTAAGAAAGAA+AGG - chr8.2:10418080-10418099 None:intergenic 20.0%
!!! TCACTTATAAGTTTTAATTG+TGG + chr8.2:10417899-10417918 MS.gene26799:intron 20.0%
!!! TTATAAGTTTTAATTGTGGA+TGG + chr8.2:10417903-10417922 MS.gene26799:intron 20.0%
!!! TTATGATAGCTTATTTCTTA+AGG + chr8.2:10418906-10418925 MS.gene26799:intron 20.0%
!!! TTCTAGAAATTATAGGATTT+AGG + chr8.2:10418697-10418716 MS.gene26799:intron 20.0%
!!! TTCTTTTTAGTGTCTTATTT+AGG - chr8.2:10417174-10417193 None:intergenic 20.0%
!!! TTTTGAAATTCATGTAAACA+GGG - chr8.2:10416695-10416714 None:intergenic 20.0%
!!! TTTTTGAAATTCATGTAAAC+AGG - chr8.2:10416696-10416715 None:intergenic 20.0%
! AAAAGAATAGCATAATCTTG+TGG - chr8.2:10418672-10418691 None:intergenic 25.0%
! ACTTTATTCTTATTGAACGT+CGG + chr8.2:10418554-10418573 MS.gene26799:intron 25.0%
! AGAAAACATTTGATGGAAAT+GGG - chr8.2:10417592-10417611 None:intergenic 25.0%
! AGACCATGATAATATAACAT+CGG + chr8.2:10418646-10418665 MS.gene26799:intron 25.0%
! ATTAACAAAAATCACCTTAG+TGG + chr8.2:10417198-10417217 MS.gene26799:intron 25.0%
! ATTAACATGTCCATGTAAAT+GGG - chr8.2:10418302-10418321 None:intergenic 25.0%
! GAATAGTAATTCCTCAATAT+AGG + chr8.2:10417498-10417517 MS.gene26799:intron 25.0%
! GAATCCTTAAAAATTTGAAC+AGG - chr8.2:10417121-10417140 None:intergenic 25.0%
! GAATGGTAAAGGTTAAAAAA+TGG + chr8.2:10418456-10418475 MS.gene26799:intron 25.0%
! TAGAAAACATTTGATGGAAA+TGG - chr8.2:10417593-10417612 None:intergenic 25.0%
! TAGAAATGAAATTGAATCCT+AGG + chr8.2:10418088-10418107 MS.gene26799:intron 25.0%
! TATTAACATGTCCATGTAAA+TGG - chr8.2:10418303-10418322 None:intergenic 25.0%
! TCTTTATCTTCTATCTCTAT+TGG - chr8.2:10417059-10417078 None:intergenic 25.0%
! TTAACAAAAATCACCTTAGT+GGG + chr8.2:10417199-10417218 MS.gene26799:intron 25.0%
!!! AGTGTCTTATTTAGGTTTTT+GGG - chr8.2:10417166-10417185 None:intergenic 25.0%
!!! TAGTGTCTTATTTAGGTTTT+TGG - chr8.2:10417167-10417186 None:intergenic 25.0%
!!! TTTTGTTTTTATGTCTTTGC+AGG + chr8.2:10419071-10419090 MS.gene26799:intron 25.0%
AAAAAACTTACTCGAAGCTA+TGG - chr8.2:10417003-10417022 None:intergenic 30.0%
AATATCATAGATGATCTCTC+TGG - chr8.2:10418881-10418900 None:intergenic 30.0%
AATTACCAAGCATAAAGAAG+TGG + chr8.2:10416658-10416677 MS.gene26799:CDS 30.0%
CTATTATGACAAAGAGATAC+TGG + chr8.2:10417745-10417764 MS.gene26799:intron 30.0%
GATGGTTAGAAAACATTTGA+TGG - chr8.2:10417599-10417618 None:intergenic 30.0%
GTAATTCCTCAATATAGGAT+AGG + chr8.2:10417503-10417522 MS.gene26799:intron 30.0%
GTTAATAACATCACAACAGA+GGG + chr8.2:10418316-10418335 MS.gene26799:intron 30.0%
TAATTAACCTCGATTGCAAA+AGG - chr8.2:10416813-10416832 None:intergenic 30.0%
TGAGAGTAGAATTGGAAATT+AGG + chr8.2:10417928-10417947 MS.gene26799:intron 30.0%
TGATAAGGCCATTACAAAAA+GGG - chr8.2:10418611-10418630 None:intergenic 30.0%
TGCAAGCATCACATATTAAA+AGG + chr8.2:10418965-10418984 MS.gene26799:intron 30.0%
TGTTAATAACATCACAACAG+AGG + chr8.2:10418315-10418334 MS.gene26799:intron 30.0%
TTAATAACATCACAACAGAG+GGG + chr8.2:10418317-10418336 MS.gene26799:intron 30.0%
TTCTTCTTAGAGAATGGTAA+AGG + chr8.2:10418445-10418464 MS.gene26799:intron 30.0%
TTGATAAGGCCATTACAAAA+AGG - chr8.2:10418612-10418631 None:intergenic 30.0%
! AGTTAGAGTTTTGCTCAAAA+AGG + chr8.2:10416953-10416972 MS.gene26799:CDS 30.0%
! ATTCAAAGTACCCATTTACA+TGG + chr8.2:10418289-10418308 MS.gene26799:intron 30.0%
! GTGTTTTTCTTCTTAGAGAA+TGG + chr8.2:10418439-10418458 MS.gene26799:intron 30.0%
!! CACTACTTTAGAGTTTGATA+AGG - chr8.2:10418626-10418645 None:intergenic 30.0%
!! CTTGTGATATTCCACTTTTA+TGG + chr8.2:10417847-10417866 MS.gene26799:intron 30.0%
!! TTGAATTTGTAAAAGTGCCA+CGG - chr8.2:10418275-10418294 None:intergenic 30.0%
!!! CTCCAATATTTTGACTGTTT+AGG + chr8.2:10418249-10418268 MS.gene26799:intron 30.0%
!!! GTGTCTTATTTAGGTTTTTG+GGG - chr8.2:10417165-10417184 None:intergenic 30.0%
AACATTTGATGGAAATGGGA+TGG - chr8.2:10417588-10417607 None:intergenic 35.0%
AACCCTACTTGTCTTGAAAT+TGG + chr8.2:10416762-10416781 MS.gene26799:CDS 35.0%
AATAAAACACAGAGCTTCAG+TGG - chr8.2:10417279-10417298 None:intergenic 35.0%
AATGCTCCTATCCTATATTG+AGG - chr8.2:10417512-10417531 None:intergenic 35.0%
ACATACTATTATCAGTGTCG+TGG + chr8.2:10417633-10417652 MS.gene26799:intron 35.0%
ACCCTACTTGTCTTGAAATT+GGG + chr8.2:10416763-10416782 MS.gene26799:CDS 35.0%
AGTTACGAAATTGACCTACA+TGG - chr8.2:10418510-10418529 None:intergenic 35.0%
CAAAATATTGGAGCATGCTT+AGG - chr8.2:10418242-10418261 None:intergenic 35.0%
CCACAAACATAACCAAAAGT+AGG + chr8.2:10417249-10417268 MS.gene26799:intron 35.0%
GATCAACATAGAAGCTACAT+AGG + chr8.2:10418147-10418166 MS.gene26799:intron 35.0%
GCATAACATTACTTTGTCCT+AGG - chr8.2:10418108-10418127 None:intergenic 35.0%
GGCCTAAACAGTCAAAATAT+TGG - chr8.2:10418254-10418273 None:intergenic 35.0%
TAATAACATCACAACAGAGG+GGG + chr8.2:10418318-10418337 MS.gene26799:intron 35.0%
TGGCCGATGTTATATTATCA+TGG - chr8.2:10418652-10418671 None:intergenic 35.0%
TTCAAAAAGACTGTTGCTGA+AGG + chr8.2:10416708-10416727 MS.gene26799:CDS 35.0%
TTGGTTATGTTTGTGGTTGT+GGG - chr8.2:10417245-10417264 None:intergenic 35.0%
TTTGGTTATGTTTGTGGTTG+TGG - chr8.2:10417246-10417265 None:intergenic 35.0%
! GTAAAACTAGTTTGCACTGA+CGG + chr8.2:10418578-10418597 MS.gene26799:intron 35.0%
! TAAACTTCCTTTTGCAATCG+AGG + chr8.2:10416803-10416822 MS.gene26799:CDS 35.0%
! TAGAGTTTTGCTCAAAAAGG+AGG + chr8.2:10416956-10416975 MS.gene26799:CDS 35.0%
! TGGCCCTGTTCAAATTTTTA+AGG + chr8.2:10417114-10417133 MS.gene26799:intron 35.0%
!! AGATAGACTTGATGATGTAG+TGG - chr8.2:10417792-10417811 None:intergenic 35.0%
!! ATATTCCACTTTTATGGCTC+TGG + chr8.2:10417853-10417872 MS.gene26799:intron 35.0%
!! CCTACTTTTGGTTATGTTTG+TGG - chr8.2:10417252-10417271 None:intergenic 35.0%
!! GGCCAACAAATTTGTTAAGA+CGG - chr8.2:10417099-10417118 None:intergenic 35.0%
!! TGAGTTTGATTTGCTCACTT+AGG + chr8.2:10418012-10418031 MS.gene26799:intron 35.0%
AACTTACTCGAAGCTATGGA+TGG - chr8.2:10416999-10417018 None:intergenic 40.0%
ACGATCCACTTCTTTATGCT+TGG - chr8.2:10416666-10416685 None:intergenic 40.0%
ATGTTGCAGCAATGTTCTGA+TGG - chr8.2:10417617-10417636 None:intergenic 40.0%
CCCCAATTTCAAGACAAGTA+GGG - chr8.2:10416767-10416786 None:intergenic 40.0%
CCCTACTTGTCTTGAAATTG+GGG + chr8.2:10416764-10416783 MS.gene26799:CDS 40.0%
CTCTTTGCATGAAATCACGA+GGG - chr8.2:10416929-10416948 None:intergenic 40.0%
GGCCGTCTTAACAAATTTGT+TGG + chr8.2:10417094-10417113 MS.gene26799:intron 40.0%
TCCCCAATTTCAAGACAAGT+AGG - chr8.2:10416768-10416787 None:intergenic 40.0%
TGGAATATCACAAGTAGTGC+TGG - chr8.2:10417841-10417860 None:intergenic 40.0%
TTGTTGATCACAGCTTGACA+AGG + chr8.2:10416899-10416918 MS.gene26799:intron 40.0%
! AGTAGGGTTTTCGCATGATT+TGG - chr8.2:10416751-10416770 None:intergenic 40.0%
! ATAAAGACCCTGTTCTAGAC+AGG + chr8.2:10417072-10417091 MS.gene26799:intron 40.0%
! GTGTGTGTCCCTTTTTGTAA+TGG + chr8.2:10418600-10418619 MS.gene26799:intron 40.0%
! GTTTTGCTCAAAAAGGAGGA+TGG + chr8.2:10416960-10416979 MS.gene26799:CDS 40.0%
! TAAAGACCCTGTTCTAGACA+GGG + chr8.2:10417073-10417092 MS.gene26799:intron 40.0%
!! AGAGATACTGGCTTTAAGTC+AGG + chr8.2:10417757-10417776 MS.gene26799:intron 40.0%
!! ATCAAGCTACTCTAGAACCA+GGG - chr8.2:10417431-10417450 None:intergenic 40.0%
!! GAAATAGCATTCTGAAGCAG+CGG + chr8.2:10418402-10418421 MS.gene26799:intron 40.0%
!!! TATTTTGACTGTTTAGGCCG+TGG + chr8.2:10418255-10418274 MS.gene26799:intron 40.0%
AACCTGTCATCTTGCCATGT+AGG + chr8.2:10418493-10418512 MS.gene26799:intron 45.0%
AATGTTACGCGTTGCAGAGA+TGG + chr8.2:10419103-10419122 MS.gene26799:CDS 45.0%
AGGATTTAGGCACAGAGAGA+AGG + chr8.2:10418710-10418729 MS.gene26799:intron 45.0%
ATAGATGATCTCTCTGGCGT+GGG - chr8.2:10418875-10418894 None:intergenic 45.0%
CCTCGTGATTTCATGCAAAG+AGG + chr8.2:10416927-10416946 MS.gene26799:CDS 45.0%
CCTCTTTGCATGAAATCACG+AGG - chr8.2:10416930-10416949 None:intergenic 45.0%
CCTTCCAACAAATCTGGGAA+AGG + chr8.2:10419191-10419210 MS.gene26799:CDS 45.0%
CTGGACCTTCCAACAAATCT+GGG + chr8.2:10419186-10419205 MS.gene26799:CDS 45.0%
GCGATTCTCAACTCGACATT+GGG - chr8.2:10418937-10418956 None:intergenic 45.0%
GTTGCTGAAGGAAGACGAAT+CGG + chr8.2:10416720-10416739 MS.gene26799:CDS 45.0%
TCCAACAAATCTGGGAAAGG+TGG + chr8.2:10419194-10419213 MS.gene26799:CDS 45.0%
TCCACCTTTCCCAGATTTGT+TGG - chr8.2:10419198-10419217 None:intergenic 45.0%
TGCGATTCTCAACTCGACAT+TGG - chr8.2:10418938-10418957 None:intergenic 45.0%
TGGTCCTTCCATGGTGTTTA+GGG - chr8.2:10419130-10419149 None:intergenic 45.0%
TTGGTCCTTCCATGGTGTTT+AGG - chr8.2:10419131-10419150 None:intergenic 45.0%
TTTCCACCTCTGTCTGATGT+TGG + chr8.2:10417674-10417693 MS.gene26799:intron 45.0%
! TTCAGTGGTGTGCCTACTTT+TGG - chr8.2:10417264-10417283 None:intergenic 45.0%
! TTGTTGCTTGCTAAAGCCTG+TGG + chr8.2:10417553-10417572 MS.gene26799:intron 45.0%
!! CCTTTCCCAGATTTGTTGGA+AGG - chr8.2:10419194-10419213 None:intergenic 45.0%
!! GATCAAGCTACTCTAGAACC+AGG - chr8.2:10417432-10417451 None:intergenic 45.0%
!! GGATGGACTGAGAGTAGAAT+TGG + chr8.2:10417920-10417939 MS.gene26799:intron 45.0%
!! TGTCTGATGTTGGCTTCAGT+TGG + chr8.2:10417684-10417703 MS.gene26799:intron 45.0%
AAGCCAACATCAGACAGAGG+TGG - chr8.2:10417680-10417699 None:intergenic 50.0%
CATAGATGATCTCTCTGGCG+TGG - chr8.2:10418876-10418895 None:intergenic 50.0%
CCAACAACAACTGCAACTGC+TGG + chr8.2:10419167-10419186 MS.gene26799:CDS 50.0%
CCAGCAGTTGCAGTTGTTGT+TGG - chr8.2:10419170-10419189 None:intergenic 50.0%
CGAGTCCAGAGCCATAAAAG+TGG - chr8.2:10417861-10417880 None:intergenic 50.0%
CTGAAGCCAACATCAGACAG+AGG - chr8.2:10417683-10417702 None:intergenic 50.0%
GACCTACATGGCAAGATGAC+AGG - chr8.2:10418498-10418517 None:intergenic 50.0%
GAGATGGTCCCTAAACACCA+TGG + chr8.2:10419119-10419138 MS.gene26799:CDS 50.0%
GCTGGACCTTCCAACAAATC+TGG + chr8.2:10419185-10419204 MS.gene26799:CDS 50.0%
TGATGGAAATGGGATGGCAC+TGG - chr8.2:10417582-10417601 None:intergenic 50.0%
TGGTCCCTAAACACCATGGA+AGG + chr8.2:10419123-10419142 MS.gene26799:CDS 50.0%
TGGTTGTGGGTTCAACTCCT+GGG - chr8.2:10417232-10417251 None:intergenic 50.0%
TTCGGGCCCCAAAAAAATCG+AGG + chr8.2:10417366-10417385 MS.gene26799:intron 50.0%
! ACTCGACACTGGATTGGAAC+TGG + chr8.2:10417876-10417895 MS.gene26799:intron 50.0%
!!! ACCGGGCCTCGATTTTTTTG+GGG - chr8.2:10417375-10417394 None:intergenic 50.0%
!!! CACCGGGCCTCGATTTTTTT+GGG - chr8.2:10417376-10417395 None:intergenic 50.0%
!!! TCACCGGGCCTCGATTTTTT+TGG - chr8.2:10417377-10417396 None:intergenic 50.0%
CCATGGAAGGACCAAGAAGC+AGG + chr8.2:10419136-10419155 MS.gene26799:CDS 55.0%
CCTGCTTCTTGGTCCTTCCA+TGG - chr8.2:10419139-10419158 None:intergenic 55.0%
CCTGGGTTCAACTCCCACTA+AGG - chr8.2:10417215-10417234 None:intergenic 55.0%
CCTTAGTGGGAGTTGAACCC+AGG + chr8.2:10417212-10417231 MS.gene26799:intron 55.0%
CTCTGGACTCGACACTGGAT+TGG + chr8.2:10417870-10417889 MS.gene26799:intron 55.0%
GCCCCAAAAAAATCGAGGCC+CGG + chr8.2:10417371-10417390 MS.gene26799:intron 55.0%
GTGGTTGTGGGTTCAACTCC+TGG - chr8.2:10417233-10417252 None:intergenic 55.0%
TGGTGCAGTCTCCTGCTTCT+TGG - chr8.2:10419150-10419169 None:intergenic 55.0%
! AAGACGGCCCTGTCTAGAAC+AGG - chr8.2:10417083-10417102 None:intergenic 55.0%
! AGACGGCCCTGTCTAGAACA+GGG - chr8.2:10417082-10417101 None:intergenic 55.0%
!! AGCTACTCTAGAACCAGGGC+CGG - chr8.2:10417427-10417446 None:intergenic 55.0%
!! TATGGCTCTGGACTCGACAC+TGG + chr8.2:10417865-10417884 MS.gene26799:intron 55.0%
GTGACATAGCCCAGCCTCGA+CGG + chr8.2:10417393-10417412 MS.gene26799:intron 60.0%
TCGAGGCTGGGCTATGTCAC+CGG - chr8.2:10417393-10417412 None:intergenic 60.0%
TGACATAGCCCAGCCTCGAC+GGG + chr8.2:10417394-10417413 MS.gene26799:intron 60.0%
CGAGGCTGGGCTATGTCACC+GGG - chr8.2:10417392-10417411 None:intergenic 65.0%
!! GGGATGGCACTGGCATCCAC+AGG - chr8.2:10417572-10417591 None:intergenic 65.0%
GCCCATAGCCCGTCGAGGCT+GGG - chr8.2:10417405-10417424 None:intergenic 70.0%
!! AGCCCAGCCTCGACGGGCTA+TGG + chr8.2:10417400-10417419 MS.gene26799:intron 70.0%
!! AGCCTCGACGGGCTATGGGC+CGG + chr8.2:10417405-10417424 MS.gene26799:intron 70.0%
!! GCCCAGCCTCGACGGGCTAT+GGG + chr8.2:10417401-10417420 MS.gene26799:intron 70.0%
GGCCCATAGCCCGTCGAGGC+TGG - chr8.2:10417406-10417425 None:intergenic 75.0%
! GGCCGGCCCATAGCCCGTCG+AGG - chr8.2:10417410-10417429 None:intergenic 80.0%
!!! GACGGGCTATGGGCCGGCCC+TGG + chr8.2:10417411-10417430 MS.gene26799:intron 80.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 10416648 10419232 10416648 ID=MS.gene26799
chr8.2 mRNA 10416648 10419232 10416648 ID=MS.gene26799.t1;Parent=MS.gene26799
chr8.2 exon 10416648 10416824 10416648 ID=MS.gene26799.t1.exon1;Parent=MS.gene26799.t1
chr8.2 CDS 10416648 10416824 10416648 ID=cds.MS.gene26799.t1;Parent=MS.gene26799.t1
chr8.2 exon 10416912 10417011 10416912 ID=MS.gene26799.t1.exon2;Parent=MS.gene26799.t1
chr8.2 CDS 10416912 10417011 10416912 ID=cds.MS.gene26799.t1;Parent=MS.gene26799.t1
chr8.2 exon 10419093 10419232 10419093 ID=MS.gene26799.t1.exon3;Parent=MS.gene26799.t1
chr8.2 CDS 10419093 10419232 10419093 ID=cds.MS.gene26799.t1;Parent=MS.gene26799.t1
Gene Sequence

>MS.gene26799

ATGGAAGGTGAATTACCAAGCATAAAGAAGTGGATCGTATTATACCCTGTTTACATGAATTTCAAAAAGACTGTTGCTGAAGGAAGACGAATCGGAATCTCCAAATCATGCGAAAACCCTACTTGTCTTGAAATTGGGGATTGTTGCAATTATCTTAAACTTCCTTTTGCAATCGAGGTTAATTACTCACTCTTTTTTTCACATTTCAATTTCAATTCATTATTGAAGAAATGTATAATAATTATTGATGATTGTTGATCACAGCTTGACAAGGCTTACCCTCGTGATTTCATGCAAAGAGGACGAGTTAGAGTTTTGCTCAAAAAGGAGGATGGAACTCTTATTAATCCATCCATAGCTTCGAGTAAGTTTTTTCTCAATAATTTTGCATCAATCTAGACTATTTGACCAATAGAGATAGAAGATAAAGACCCTGTTCTAGACAGGGCCGTCTTAACAAATTTGTTGGCCCTGTTCAAATTTTTAAGGATTCACAAAAAATTTAAATTTTGGGCCCCAAAAACCTAAATAAGACACTAAAAAGAAAATTATTAACAAAAATCACCTTAGTGGGAGTTGAACCCAGGAGTTGAACCCACAACCACAAACATAACCAAAAGTAGGCACACCACTGAAGCTCTGTGTTTTATTTGAAATTTTATTCGCGCTAAAGATATATAAATACTAATTAAGTGCCTAACATATAAAAAAAATATGTTTCGGGCCCCAAAAAAATCGAGGCCCGGTGACATAGCCCAGCCTCGACGGGCTATGGGCCGGCCCTGGTTCTAGAGTAGCTTGATCTGAGACATTAATTTAATACTTGAACAAAATATTCATTCATCGAATCGAATAGTAATTCCTCAATATAGGATAGGAGCATTGCATGCAAAAAAGTGATTCTATTGTTGCTTGCTAAAGCCTGTGGATGCCAGTGCCATCCCATTTCCATCAAATGTTTTCTAACCATCAGAACATTGCTGCAACATACTATTATCAGTGTCGTGGTGATTACTTTGATATTTTTTTCCACCTCTGTCTGATGTTGGCTTCAGTTGGCATTTCGATTGCGACTGAGTCGCTAACAACAAAATTGTCTATTATGACAAAGAGATACTGGCTTTAAGTCAGGATGTTTTGTCCACTACATCATCAAGTCTATCTACATTGATTATACTTTCTACTTTCTACCAGCACTACTTGTGATATTCCACTTTTATGGCTCTGGACTCGACACTGGATTGGAACTGGTCACTTATAAGTTTTAATTGTGGATGGACTGAGAGTAGAATTGGAAATTAGGAGTTAGACTTGTGTTGCTGTTCTGCCATTTTATTTAACATAAAAGTAGAAGTACAACAATATGAGTTTGATTTGCTCACTTAGGTGAAAGCTTAAAAGCATTTGAGAAATCAATTGAAAATATTCTCCTTTCTTTCTTAGAAATGAAATTGAATCCTAGGACAAAGTAATGTTATGCATGTAACATTATGCATCTTGATCAACATAGAAGCTACATAGGAACTACATATATATTTGGCATTTTTTATTTGTGATAATATCTACATTGTGACCCTTTATAAATCTATATCCTAAGCATGCTCCAATATTTTGACTGTTTAGGCCGTGGCACTTTTACAAATTCAAAGTACCCATTTACATGGACATGTTAATAACATCACAACAGAGGGGGATGAGAAACACTATGCAAAACTCTTTCAAAATGTATTTCACAATCAAGTGCAATATTGCTTGAAATAGCATTCTGAAGCAGCGGTGAATTCTCATTGAGTGTTTTTCTTCTTAGAGAATGGTAAAGGTTAAAAAATGGGAAGTAACAATCGAAACCTGTCATCTTGCCATGTAGGTCAATTTCGTAACTGTCTTTTAAAAACAACTACTACATACTTTATTCTTATTGAACGTCGGTGTAAAACTAGTTTGCACTGACGGTGTGTGTCCCTTTTTGTAATGGCCTTATCAAACTCTAAAGTAGTGAGACCATGATAATATAACATCGGCCACAAGATTATGCTATTCTTTTTTATTTTCTAGAAATTATAGGATTTAGGCACAGAGAGAAGGAAACTGAAAATAGAGACTAAATATTTTCAAAATGATATTTGGTTTGATGTGATAATCCCGTCTTTATAACAATATATATTTAGCTACCAAATTCTATTTAAATAGGAAAATTAATCATGAGATTCAATGAAACATAGAGCCCACGCCAGAGAGATCATCTATGATATTATAAATTATGATAGCTTATTTCTTAAGGCTTTTCCCAATGTCGAGTTGAGAATCGCAACTCTTTTGCAAGCATCACATATTAAAAGGATTAGAAAATTATTTTCTGTTATTTTCTTCAAGATGCATAGATTTCATGAATGTTGAATATACTAGTATCTCATTATCATTTGTTTTGTTTTTATGTCTTTGCAGGAAAGCAACTAATGTTACGCGTTGCAGAGATGGTCCCTAAACACCATGGAAGGACCAAGAAGCAGGAGACTGCACCAACAACAACTGCAACTGCTGGACCTTCCAACAAATCTGGGAAAGGTGGAAAAAAGAGAAGATAA
Protein sequence

>MS.gene26799.t1

MEGELPSIKKWIVLYPVYMNFKKTVAEGRRIGISKSCENPTCLEIGDCCNYLKLPFAIELDKAYPRDFMQRGRVRVLLKKEDGTLINPSIASRKQLMLRVAEMVPKHHGRTKKQETAPTTTATAGPSNKSGKGGKKRR