Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026743.t1 | XP_003604367.1 | 98.4 | 496 | 8 | 0 | 1 | 496 | 1 | 496 | 3.90E-275 | 956.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026743.t1 | P49972 | 90.3 | 497 | 44 | 1 | 1 | 493 | 1 | 497 | 3.8e-255 | 881.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026743.t1 | G7JGX1 | 98.4 | 496 | 8 | 0 | 1 | 496 | 1 | 496 | 2.8e-275 | 956.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene38904 | MS.gene026743 | PPI |
MS.gene26799 | MS.gene026743 | PPI |
MS.gene24695 | MS.gene026743 | PPI |
MS.gene064159 | MS.gene026743 | PPI |
MS.gene23506 | MS.gene026743 | PPI |
MS.gene24730 | MS.gene026743 | PPI |
MS.gene026743 | MS.gene007198 | PPI |
MS.gene020350 | MS.gene026743 | PPI |
MS.gene018728 | MS.gene026743 | PPI |
MS.gene68613 | MS.gene026743 | PPI |
MS.gene026743 | MS.gene97022 | PPI |
MS.gene050301 | MS.gene026743 | PPI |
MS.gene026743 | MS.gene030142 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026743.t1 | MTR_4g010050 | 98.387 | 496 | 8 | 0 | 1 | 496 | 1 | 496 | 0.0 | 1012 |
MS.gene026743.t1 | MTR_2g104050 | 76.876 | 493 | 90 | 2 | 1 | 493 | 1 | 469 | 0.0 | 777 |
MS.gene026743.t1 | MTR_7g085470 | 51.642 | 335 | 117 | 8 | 1 | 325 | 1 | 300 | 1.22e-97 | 298 |
MS.gene026743.t1 | MTR_7g085570 | 47.962 | 319 | 102 | 10 | 17 | 325 | 1 | 265 | 2.09e-75 | 239 |
MS.gene026743.t1 | MTR_7g104890 | 29.718 | 461 | 296 | 9 | 1 | 447 | 62 | 508 | 1.14e-57 | 200 |
MS.gene026743.t1 | MTR_7g104890 | 30.000 | 390 | 263 | 5 | 75 | 461 | 7 | 389 | 1.40e-54 | 189 |
MS.gene026743.t1 | MTR_8g032340 | 29.866 | 298 | 189 | 6 | 15 | 295 | 76 | 370 | 2.08e-27 | 113 |
MS.gene026743.t1 | MTR_4g130770 | 31.088 | 193 | 122 | 2 | 114 | 295 | 438 | 630 | 1.28e-25 | 110 |
MS.gene026743.t1 | MTR_4g010060 | 73.585 | 53 | 14 | 0 | 35 | 87 | 93 | 145 | 1.13e-17 | 80.5 |
MS.gene026743.t1 | MTR_4g010060 | 86.486 | 37 | 5 | 0 | 1 | 37 | 1 | 37 | 3.11e-12 | 64.7 |
MS.gene026743.t1 | MTR_8g032480 | 30.601 | 183 | 116 | 4 | 123 | 295 | 14 | 195 | 2.85e-15 | 74.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026743.t1 | AT1G48900 | 87.221 | 493 | 63 | 0 | 1 | 493 | 1 | 493 | 0.0 | 906 |
MS.gene026743.t1 | AT5G49500 | 77.465 | 497 | 110 | 1 | 1 | 495 | 1 | 497 | 0.0 | 796 |
MS.gene026743.t1 | AT1G15310 | 77.526 | 485 | 93 | 3 | 1 | 485 | 1 | 469 | 0.0 | 772 |
MS.gene026743.t1 | AT1G48900 | 85.349 | 430 | 60 | 2 | 1 | 430 | 1 | 427 | 0.0 | 768 |
MS.gene026743.t1 | AT5G49500 | 80.541 | 370 | 72 | 0 | 126 | 495 | 6 | 375 | 0.0 | 624 |
MS.gene026743.t1 | AT5G03940 | 29.009 | 424 | 283 | 5 | 6 | 421 | 81 | 494 | 3.21e-57 | 199 |
MS.gene026743.t1 | AT5G66970 | 42.105 | 171 | 96 | 2 | 1 | 171 | 1 | 168 | 1.76e-35 | 130 |
MS.gene026743.t1 | AT2G45770 | 30.303 | 297 | 187 | 5 | 15 | 295 | 73 | 365 | 1.42e-31 | 125 |
MS.gene026743.t1 | AT4G30600 | 31.088 | 193 | 122 | 2 | 114 | 295 | 441 | 633 | 1.37e-25 | 110 |
MS.gene026743.t1 | AT4G30600 | 31.088 | 193 | 122 | 2 | 114 | 295 | 441 | 633 | 1.37e-25 | 110 |
Find 106 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTATTACTTTGCAGCTATA+TGG | 0.228796 | 4.1:+85739382 | MS.gene026743:intron |
ATTAACAATCTTCTTAATAT+TGG | 0.234181 | 4.1:-85734664 | None:intergenic |
AAGATGGTGCTCGCGGATTT+AGG | 0.260211 | 4.1:+85734501 | None:intergenic |
CCATTTGTCAGTCGTCTATT+AGG | 0.261155 | 4.1:+85740021 | MS.gene026743:CDS |
CGTGACTCATTCATGAGCTT+TGG | 0.261469 | 4.1:-85740830 | None:intergenic |
GAACTCATTTCTCCCTTCTT+TGG | 0.270678 | 4.1:-85740965 | None:intergenic |
TCAGGCCAGGGAGACTTGTC+TGG | 0.286825 | 4.1:+85740221 | MS.gene026743:intron |
GGAGTGAAAGCGGGCTTTCC+AGG | 0.287292 | 4.1:-85737154 | None:intergenic |
CTGTCCTGATCCTTGCCTTT+TGG | 0.304349 | 4.1:-85740616 | None:intergenic |
GAGGTTCTGGTCGACAAGTT+AGG | 0.324653 | 4.1:+85740870 | MS.gene026743:CDS |
GAAATCGATGGGATCTAATA+AGG | 0.327013 | 4.1:+85741084 | MS.gene026743:CDS |
TGCAGCTTATTAAGCAGTTC+AGG | 0.332627 | 4.1:-85740287 | None:intergenic |
CAACACTCTGTTTAAATGCT+TGG | 0.344126 | 4.1:-85739693 | None:intergenic |
CCACAGATGCTAAAGCAAAT+TGG | 0.344130 | 4.1:+85741034 | MS.gene026743:CDS |
ATGCGTATAGCTCGAGGTTC+TGG | 0.344763 | 4.1:+85740857 | MS.gene026743:CDS |
GTGACTCATTCATGAGCTTT+GGG | 0.360788 | 4.1:-85740829 | None:intergenic |
AAAGCTAAGATCCCTTTCTA+TGG | 0.370177 | 4.1:+85737616 | MS.gene026743:CDS |
ATACCGTTGCTTCCGAAACT+TGG | 0.375298 | 4.1:-85739529 | None:intergenic |
TGAAGAAATGCGCCAAGTTT+CGG | 0.395551 | 4.1:+85739517 | MS.gene026743:CDS |
GACATTCATGTTTCGAGATA+AGG | 0.395944 | 4.1:-85740987 | None:intergenic |
GATCCATTGGAACAACTTCA+TGG | 0.399514 | 4.1:-85740259 | None:intergenic |
AACACTCTGTTTAAATGCTT+GGG | 0.406606 | 4.1:-85739692 | None:intergenic |
ATAGAAAGGGATCTTAGCTT+TGG | 0.412663 | 4.1:-85737614 | None:intergenic |
CAATGAGCTCTGCAATATCT+TGG | 0.413074 | 4.1:+85737129 | MS.gene026743:CDS |
GTTTCAGAATATTCTTAAGA+TGG | 0.414472 | 4.1:+85740346 | MS.gene026743:CDS |
GTCATGTTTGTTGGTTTACA+AGG | 0.417327 | 4.1:+85737199 | MS.gene026743:CDS |
CCTGTCATATTCATTGGAAC+TGG | 0.418342 | 4.1:+85739961 | MS.gene026743:CDS |
AAGGACATGATGGGAATGTT+TGG | 0.422905 | 4.1:+85741103 | MS.gene026743:CDS |
GCTAGTGTTGTCATGTTTGT+TGG | 0.423842 | 4.1:+85737190 | MS.gene026743:CDS |
AAGAGTCCTGTCATATTCAT+TGG | 0.428242 | 4.1:+85739955 | MS.gene026743:CDS |
ATGGGAATGTTTGGCGGCGG+TGG | 0.436163 | 4.1:+85741112 | MS.gene026743:CDS |
ACAAGCGTCTCGCAAAGATA+TGG | 0.438419 | 4.1:+85740918 | MS.gene026743:CDS |
CCAATTTGCTTTAGCATCTG+TGG | 0.443903 | 4.1:-85741034 | None:intergenic |
GGCAATGAATTAATACCAAA+AGG | 0.444277 | 4.1:+85740601 | MS.gene026743:CDS |
TTTATCATCAAAAGAAAGGC+TGG | 0.445583 | 4.1:+85737524 | MS.gene026743:CDS |
TAGGGAAGTAATGGAGATGA+TGG | 0.449379 | 4.1:+85740889 | MS.gene026743:CDS |
TTTGTCATGGATAGCAGTAT+TGG | 0.450799 | 4.1:+85739649 | MS.gene026743:CDS |
TTAAACAGAGTGTTGCAGTT+GGG | 0.452491 | 4.1:+85739701 | MS.gene026743:CDS |
AGGTTCTGGTCGACAAGTTA+GGG | 0.462023 | 4.1:+85740871 | MS.gene026743:CDS |
ATTAATTCATTGCCAAATCC+TGG | 0.467166 | 4.1:-85740592 | None:intergenic |
AGGGCTTAAAATACCAAAGA+AGG | 0.470429 | 4.1:+85740952 | MS.gene026743:CDS |
AGATCTTGTTATCTTTGTCA+TGG | 0.480044 | 4.1:+85739636 | MS.gene026743:CDS |
TTTCAGAATATTCTTAAGAT+GGG | 0.482656 | 4.1:+85740347 | MS.gene026743:CDS |
AATACCAAAAGGCAAGGATC+AGG | 0.483853 | 4.1:+85740612 | MS.gene026743:CDS |
CATGGATAGCAGTATTGGTC+AGG | 0.485878 | 4.1:+85739654 | MS.gene026743:CDS |
ATGACAAAGATAACAAGATC+TGG | 0.486961 | 4.1:-85739634 | None:intergenic |
GGGATCTAATAAGGACATGA+TGG | 0.488421 | 4.1:+85741093 | MS.gene026743:CDS |
CTCTGCAATATCTTGGATCC+TGG | 0.490760 | 4.1:+85737136 | MS.gene026743:CDS |
CAAGACTACCTTCCATAGAA+AGG | 0.491497 | 4.1:-85737628 | None:intergenic |
CTTATAATTGTTGATACTAG+TGG | 0.492017 | 4.1:+85739467 | MS.gene026743:CDS |
AATCTTGATGATCTTGCTGC+TGG | 0.492553 | 4.1:+85734684 | MS.gene026743:CDS |
CTAAAGCAAATTGGAGGAAT+GGG | 0.493593 | 4.1:+85741043 | MS.gene026743:CDS |
TGGCGGCGGTGGCGAGCAGT+AGG | 0.495152 | 4.1:+85741123 | MS.gene026743:CDS |
ATGGACTCAATGACAAATGA+AGG | 0.500602 | 4.1:+85740670 | MS.gene026743:CDS |
GTACATAATCCTCAAGGTAA+AGG | 0.502143 | 4.1:-85740318 | None:intergenic |
TAAACAGAGTGTTGCAGTTG+GGG | 0.502364 | 4.1:+85739702 | MS.gene026743:CDS |
AGGCAAGGATCAGGACAGCC+AGG | 0.513089 | 4.1:+85740621 | MS.gene026743:CDS |
GCTAAAGCAAATTGGAGGAA+TGG | 0.513724 | 4.1:+85741042 | MS.gene026743:CDS |
AGTTCAGGCTGTTGATCCAT+TGG | 0.517338 | 4.1:-85740272 | None:intergenic |
CCTAATAGACGACTGACAAA+TGG | 0.523880 | 4.1:-85740021 | None:intergenic |
CAGGCCAGGGAGACTTGTCT+GGG | 0.527597 | 4.1:+85740222 | MS.gene026743:intron |
TTATAATTGTTGATACTAGT+GGG | 0.532166 | 4.1:+85739468 | MS.gene026743:CDS |
AAGACTACCTTCCATAGAAA+GGG | 0.535158 | 4.1:-85737627 | None:intergenic |
AATCCATGAAGTTGTTCCAA+TGG | 0.540168 | 4.1:+85740256 | MS.gene026743:CDS |
AAAATGGATGGCCATGCAAA+GGG | 0.540546 | 4.1:+85739739 | MS.gene026743:CDS |
GATGGCCATGCAAAGGGTGG+TGG | 0.543431 | 4.1:+85739745 | MS.gene026743:CDS |
CTAAGATCCCTTTCTATGGA+AGG | 0.547864 | 4.1:+85737620 | MS.gene026743:CDS |
CCAGTTCCAATGAATATGAC+AGG | 0.549067 | 4.1:-85739961 | None:intergenic |
AAGATATGGAGCAAAATGAA+AGG | 0.553586 | 4.1:+85740932 | MS.gene026743:CDS |
GCGCACCACCACCCTTTGCA+TGG | 0.554323 | 4.1:-85739750 | None:intergenic |
GTATCTGCACATACTAGAGC+TGG | 0.555721 | 4.1:-85737550 | None:intergenic |
ACAAAGCTTGATGAAATCGA+TGG | 0.558585 | 4.1:+85741072 | MS.gene026743:CDS |
TGAACCCAGACAAGTCTCCC+TGG | 0.565640 | 4.1:-85740226 | None:intergenic |
TAAGCGTTACATGACAATGA+TGG | 0.566456 | 4.1:+85740651 | MS.gene026743:CDS |
AGATATGGAGCAAAATGAAA+GGG | 0.567829 | 4.1:+85740933 | MS.gene026743:CDS |
GACATGATGGGAATGTTTGG+CGG | 0.570743 | 4.1:+85741106 | MS.gene026743:CDS |
TTTAAACAGAGTGTTGCAGT+TGG | 0.570851 | 4.1:+85739700 | MS.gene026743:CDS |
TCGACAAGTTAGGGAAGTAA+TGG | 0.575282 | 4.1:+85740880 | MS.gene026743:CDS |
TGAATTAATACCAAAAGGCA+AGG | 0.579961 | 4.1:+85740606 | MS.gene026743:CDS |
CATTGGAACTGGAGAACACA+TGG | 0.583180 | 4.1:+85739972 | MS.gene026743:CDS |
CTGCTTAATAAGCTGCAAGA+AGG | 0.584033 | 4.1:+85740293 | MS.gene026743:CDS |
CAAAGCTTGATGAAATCGAT+GGG | 0.588981 | 4.1:+85741073 | MS.gene026743:CDS |
GGATCTAATAAGGACATGAT+GGG | 0.588990 | 4.1:+85741094 | MS.gene026743:CDS |
AACAAGCTTGAATTGAACAT+CGG | 0.590449 | 4.1:-85734628 | None:intergenic |
ATTTGCTTTAGCATCTGTGG+AGG | 0.599015 | 4.1:-85741031 | None:intergenic |
ATGGTGCTCGCGGATTTAGG+AGG | 0.600585 | 4.1:+85734504 | MS.gene026743:CDS |
TGTGCAGATACATTCAGAGC+TGG | 0.600759 | 4.1:+85737562 | MS.gene026743:CDS |
AAGCAAATTGGAGGAATGGG+TGG | 0.601558 | 4.1:+85741046 | MS.gene026743:CDS |
CAGATGCTAAAGCAAATTGG+AGG | 0.603876 | 4.1:+85741037 | MS.gene026743:CDS |
GCGCCAAGTTTCGGAAGCAA+CGG | 0.608253 | 4.1:+85739526 | MS.gene026743:CDS |
GGGCTTAAAATACCAAAGAA+GGG | 0.608894 | 4.1:+85740953 | MS.gene026743:CDS |
TTTGCTTTAGCATCTGTGGA+GGG | 0.610701 | 4.1:-85741030 | None:intergenic |
GCTTTAGCATCTGTGGAGGG+AGG | 0.611539 | 4.1:-85741027 | None:intergenic |
AGCAAATTGGAGGAATGGGT+GGG | 0.615310 | 4.1:+85741047 | MS.gene026743:CDS |
AAGAAGGAACCTTTACCTTG+AGG | 0.616437 | 4.1:+85740309 | MS.gene026743:CDS |
CTGCTCGTACATAATCCTCA+AGG | 0.625136 | 4.1:-85740324 | None:intergenic |
TGGTGCTCGCGGATTTAGGA+GGG | 0.628314 | 4.1:+85734505 | MS.gene026743:CDS |
CTTGATCAAGATGGTGCTCG+CGG | 0.629888 | 4.1:+85734494 | None:intergenic |
ATGATGGGAATGTTTGGCGG+CGG | 0.634083 | 4.1:+85741109 | MS.gene026743:CDS |
TAAGATGGGTCCCATGAGCG+AGG | 0.637224 | 4.1:+85740361 | MS.gene026743:CDS |
CAAAGCTCATGAATGAGTCA+CGG | 0.644435 | 4.1:+85740831 | MS.gene026743:CDS |
CCTGTGAAAATTGCTGTGGA+AGG | 0.664105 | 4.1:+85739413 | MS.gene026743:CDS |
AGATCCTGTGAAAATTGCTG+TGG | 0.670741 | 4.1:+85739409 | MS.gene026743:CDS |
ATGGATGGCCATGCAAAGGG+TGG | 0.687249 | 4.1:+85739742 | MS.gene026743:CDS |
CGGATGATGCGTATAGCTCG+AGG | 0.687350 | 4.1:+85740851 | MS.gene026743:CDS |
TAATTGTTGATACTAGTGGG+CGG | 0.701070 | 4.1:+85739471 | MS.gene026743:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 85734504 | 85741144 | 85734504 | ID=MS.gene026743 |
chr4.1 | mRNA | 85734504 | 85741144 | 85734504 | ID=MS.gene026743.t1;Parent=MS.gene026743 |
chr4.1 | exon | 85734504 | 85734734 | 85734504 | ID=MS.gene026743.t1.exon1;Parent=MS.gene026743.t1 |
chr4.1 | CDS | 85734504 | 85734734 | 85734504 | ID=cds.MS.gene026743.t1;Parent=MS.gene026743.t1 |
chr4.1 | exon | 85737121 | 85737220 | 85737121 | ID=MS.gene026743.t1.exon2;Parent=MS.gene026743.t1 |
chr4.1 | CDS | 85737121 | 85737220 | 85737121 | ID=cds.MS.gene026743.t1;Parent=MS.gene026743.t1 |
chr4.1 | exon | 85737488 | 85737641 | 85737488 | ID=MS.gene026743.t1.exon3;Parent=MS.gene026743.t1 |
chr4.1 | CDS | 85737488 | 85737641 | 85737488 | ID=cds.MS.gene026743.t1;Parent=MS.gene026743.t1 |
chr4.1 | exon | 85739397 | 85739547 | 85739397 | ID=MS.gene026743.t1.exon4;Parent=MS.gene026743.t1 |
chr4.1 | CDS | 85739397 | 85739547 | 85739397 | ID=cds.MS.gene026743.t1;Parent=MS.gene026743.t1 |
chr4.1 | exon | 85739631 | 85739779 | 85739631 | ID=MS.gene026743.t1.exon5;Parent=MS.gene026743.t1 |
chr4.1 | CDS | 85739631 | 85739779 | 85739631 | ID=cds.MS.gene026743.t1;Parent=MS.gene026743.t1 |
chr4.1 | exon | 85739942 | 85740042 | 85739942 | ID=MS.gene026743.t1.exon6;Parent=MS.gene026743.t1 |
chr4.1 | CDS | 85739942 | 85740042 | 85739942 | ID=cds.MS.gene026743.t1;Parent=MS.gene026743.t1 |
chr4.1 | exon | 85740225 | 85740382 | 85740225 | ID=MS.gene026743.t1.exon7;Parent=MS.gene026743.t1 |
chr4.1 | CDS | 85740225 | 85740382 | 85740225 | ID=cds.MS.gene026743.t1;Parent=MS.gene026743.t1 |
chr4.1 | exon | 85740577 | 85740691 | 85740577 | ID=MS.gene026743.t1.exon8;Parent=MS.gene026743.t1 |
chr4.1 | CDS | 85740577 | 85740691 | 85740577 | ID=cds.MS.gene026743.t1;Parent=MS.gene026743.t1 |
chr4.1 | exon | 85740813 | 85741144 | 85740813 | ID=MS.gene026743.t1.exon9;Parent=MS.gene026743.t1 |
chr4.1 | CDS | 85740813 | 85741144 | 85740813 | ID=cds.MS.gene026743.t1;Parent=MS.gene026743.t1 |
Gene Sequence |
Protein sequence |