Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034094.t1 | XP_003604367.1 | 98.4 | 496 | 8 | 0 | 78 | 573 | 1 | 496 | 4.50E-275 | 956.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034094.t1 | P49972 | 90.3 | 497 | 44 | 1 | 78 | 570 | 1 | 497 | 3.4e-255 | 882.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034094.t1 | G7JGX1 | 98.4 | 496 | 8 | 0 | 78 | 573 | 1 | 496 | 3.2e-275 | 956.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene034094 | MS.gene018728 | PPI |
MS.gene034094 | MS.gene68613 | PPI |
MS.gene38904 | MS.gene034094 | PPI |
MS.gene034094 | MS.gene064159 | PPI |
MS.gene24695 | MS.gene034094 | PPI |
MS.gene034094 | MS.gene26799 | PPI |
MS.gene23506 | MS.gene034094 | PPI |
MS.gene034094 | MS.gene007198 | PPI |
MS.gene034094 | MS.gene020350 | PPI |
MS.gene034094 | MS.gene97022 | PPI |
MS.gene034094 | MS.gene030142 | PPI |
MS.gene034094 | MS.gene24730 | PPI |
MS.gene050301 | MS.gene034094 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034094.t1 | MTR_4g010050 | 98.387 | 496 | 8 | 0 | 78 | 573 | 1 | 496 | 0.0 | 1015 |
MS.gene034094.t1 | MTR_4g010050 | 90.361 | 83 | 8 | 0 | 1 | 83 | 1 | 83 | 4.01e-40 | 153 |
MS.gene034094.t1 | MTR_2g104050 | 76.876 | 493 | 90 | 2 | 78 | 570 | 1 | 469 | 0.0 | 778 |
MS.gene034094.t1 | MTR_2g104050 | 68.675 | 83 | 26 | 0 | 1 | 83 | 1 | 83 | 1.74e-29 | 122 |
MS.gene034094.t1 | MTR_7g085470 | 51.642 | 335 | 117 | 8 | 78 | 402 | 1 | 300 | 8.18e-97 | 298 |
MS.gene034094.t1 | MTR_7g085470 | 47.561 | 82 | 36 | 2 | 1 | 78 | 1 | 79 | 5.30e-14 | 73.6 |
MS.gene034094.t1 | MTR_7g085570 | 47.962 | 319 | 102 | 10 | 94 | 402 | 1 | 265 | 1.10e-74 | 240 |
MS.gene034094.t1 | MTR_7g104890 | 29.375 | 480 | 310 | 10 | 74 | 538 | 57 | 522 | 4.34e-57 | 201 |
MS.gene034094.t1 | MTR_7g104890 | 30.000 | 390 | 263 | 5 | 152 | 538 | 7 | 389 | 8.79e-54 | 188 |
MS.gene034094.t1 | MTR_4g010060 | 48.521 | 169 | 58 | 6 | 1 | 164 | 1 | 145 | 9.49e-31 | 117 |
MS.gene034094.t1 | MTR_8g032340 | 28.707 | 317 | 206 | 6 | 73 | 372 | 57 | 370 | 5.32e-27 | 113 |
MS.gene034094.t1 | MTR_4g130770 | 31.088 | 193 | 122 | 2 | 191 | 372 | 438 | 630 | 3.60e-25 | 110 |
MS.gene034094.t1 | MTR_8g032480 | 30.601 | 183 | 116 | 4 | 200 | 372 | 14 | 195 | 4.00e-15 | 74.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034094.t1 | AT1G48900 | 87.221 | 493 | 63 | 0 | 78 | 570 | 1 | 493 | 0.0 | 909 |
MS.gene034094.t1 | AT1G48900 | 74.699 | 83 | 21 | 0 | 1 | 83 | 1 | 83 | 3.32e-33 | 133 |
MS.gene034094.t1 | AT5G49500 | 77.465 | 497 | 110 | 1 | 78 | 572 | 1 | 497 | 0.0 | 798 |
MS.gene034094.t1 | AT5G49500 | 69.880 | 83 | 25 | 0 | 1 | 83 | 1 | 83 | 3.16e-30 | 124 |
MS.gene034094.t1 | AT1G15310 | 77.526 | 485 | 93 | 3 | 78 | 562 | 1 | 469 | 0.0 | 773 |
MS.gene034094.t1 | AT1G15310 | 73.494 | 83 | 22 | 0 | 1 | 83 | 1 | 83 | 5.09e-30 | 124 |
MS.gene034094.t1 | AT1G48900 | 85.349 | 430 | 60 | 2 | 78 | 507 | 1 | 427 | 0.0 | 769 |
MS.gene034094.t1 | AT1G48900 | 74.699 | 83 | 21 | 0 | 1 | 83 | 1 | 83 | 1.71e-33 | 133 |
MS.gene034094.t1 | AT5G49500 | 80.541 | 370 | 72 | 0 | 203 | 572 | 6 | 375 | 0.0 | 627 |
MS.gene034094.t1 | AT5G03940 | 28.894 | 443 | 295 | 6 | 66 | 498 | 62 | 494 | 3.70e-58 | 204 |
MS.gene034094.t1 | AT5G66970 | 43.293 | 164 | 90 | 2 | 78 | 241 | 1 | 161 | 5.98e-34 | 127 |
MS.gene034094.t1 | AT2G45770 | 29.430 | 316 | 203 | 5 | 73 | 372 | 54 | 365 | 1.14e-31 | 126 |
MS.gene034094.t1 | AT4G30600 | 31.088 | 193 | 122 | 2 | 191 | 372 | 441 | 633 | 4.64e-25 | 110 |
MS.gene034094.t1 | AT4G30600 | 31.088 | 193 | 122 | 2 | 191 | 372 | 441 | 633 | 4.64e-25 | 110 |
Find 109 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTATTACTTTGCAGCTATA+TGG | 0.228796 | 4.4:+89130050 | MS.gene034094:intron |
ATTAACAATCTTCTTAATAT+TGG | 0.234181 | 4.4:-89123823 | None:intergenic |
ATTAACAATCTTCTTAATAT+TGG | 0.234181 | 4.4:-89125285 | None:intergenic |
AAGATGGTGCTCGCAGATTT+AGG | 0.261055 | 4.4:+89123660 | None:intergenic |
CCATTTGTCAGTCGTCTATT+AGG | 0.261155 | 4.4:+89130689 | MS.gene034094:CDS |
CGTGACTCATTCATGAGCTT+TGG | 0.261469 | 4.4:-89131499 | None:intergenic |
GAACTCATTTCTCCCTTCTT+TGG | 0.270678 | 4.4:-89131634 | None:intergenic |
AAGATGGTGCTCGCAGATTT+AGG | 0.285184 | 4.4:+89125122 | MS.gene034094:intron |
TCAGGCCAGGGAGACTTGTC+TGG | 0.286825 | 4.4:+89130889 | MS.gene034094:intron |
GGAGTGAAAGCGGGCTTTCC+AGG | 0.287292 | 4.4:-89127820 | None:intergenic |
CTGTCCTGATCCTTGCCTTT+TGG | 0.304349 | 4.4:-89131284 | None:intergenic |
GAGGTTCTGGTCGACAAGTT+AGG | 0.324653 | 4.4:+89131539 | MS.gene034094:CDS |
GAAATCGATGGGATCTAATA+AGG | 0.327013 | 4.4:+89131753 | MS.gene034094:CDS |
TGCAGCTTATTAAGCAGTTC+AGG | 0.332627 | 4.4:-89130955 | None:intergenic |
CAACACTCTGTTTAAATGCT+TGG | 0.344126 | 4.4:-89130361 | None:intergenic |
CCACAGATGCTAAAGCAAAT+TGG | 0.344130 | 4.4:+89131703 | MS.gene034094:CDS |
ATGCGTATAGCTCGAGGTTC+TGG | 0.344763 | 4.4:+89131526 | MS.gene034094:CDS |
GTGACTCATTCATGAGCTTT+GGG | 0.360788 | 4.4:-89131498 | None:intergenic |
AATCTTGATGATCTTGTTGC+TGG | 0.360807 | 4.4:+89123843 | MS.gene034094:CDS |
AAAGCTAAGATCCCTTTCTA+TGG | 0.370177 | 4.4:+89128282 | MS.gene034094:CDS |
GACATTCATGTTTCGAGATA+AGG | 0.395944 | 4.4:-89131656 | None:intergenic |
GATCCATTGGAACAACTTCA+TGG | 0.399514 | 4.4:-89130927 | None:intergenic |
AACACTCTGTTTAAATGCTT+GGG | 0.406606 | 4.4:-89130360 | None:intergenic |
ATAGAAAGGGATCTTAGCTT+TGG | 0.412663 | 4.4:-89128280 | None:intergenic |
CAATGAGCTCTGCAATATCT+TGG | 0.413074 | 4.4:+89127795 | MS.gene034094:CDS |
ATACCGTTGCTTCTGAAACT+TGG | 0.413990 | 4.4:-89130197 | None:intergenic |
GTTTCAGAATATTCTTAAGA+TGG | 0.414472 | 4.4:+89131014 | MS.gene034094:CDS |
GTCATGTTTGTTGGTTTACA+AGG | 0.417327 | 4.4:+89127865 | MS.gene034094:CDS |
CCTGTCATATTCATTGGAAC+TGG | 0.418342 | 4.4:+89130629 | MS.gene034094:CDS |
AAGGACATGATGGGAATGTT+TGG | 0.422905 | 4.4:+89131772 | MS.gene034094:CDS |
GCTAGTGTTGTCATGTTTGT+TGG | 0.423842 | 4.4:+89127856 | MS.gene034094:CDS |
AAGAGTCCTGTCATATTCAT+TGG | 0.428242 | 4.4:+89130623 | MS.gene034094:CDS |
ATGGGAATGTTTGGCGGCGG+TGG | 0.436163 | 4.4:+89131781 | MS.gene034094:CDS |
ACAAGCGTCTCGCAAAGATA+TGG | 0.438419 | 4.4:+89131587 | MS.gene034094:CDS |
CCAATTTGCTTTAGCATCTG+TGG | 0.443903 | 4.4:-89131703 | None:intergenic |
GGCAATGAATTAATACCAAA+AGG | 0.444277 | 4.4:+89131269 | MS.gene034094:CDS |
TTTATCATCAAAAGAAAGGC+TGG | 0.445583 | 4.4:+89128190 | MS.gene034094:CDS |
TAGGGAAGTAATGGAGATGA+TGG | 0.449379 | 4.4:+89131558 | MS.gene034094:CDS |
TTTGTCATGGATAGCAGTAT+TGG | 0.450799 | 4.4:+89130317 | MS.gene034094:CDS |
TTAAACAGAGTGTTGCAGTT+GGG | 0.452491 | 4.4:+89130369 | MS.gene034094:CDS |
AGGTTCTGGTCGACAAGTTA+GGG | 0.462023 | 4.4:+89131540 | MS.gene034094:CDS |
ATTAATTCATTGCCAAATCC+TGG | 0.467166 | 4.4:-89131260 | None:intergenic |
AGGGCTTAAAATACCAAAGA+AGG | 0.470429 | 4.4:+89131621 | MS.gene034094:CDS |
AGATCTTGTTATCTTTGTCA+TGG | 0.480044 | 4.4:+89130304 | MS.gene034094:CDS |
TTTCAGAATATTCTTAAGAT+GGG | 0.482656 | 4.4:+89131015 | MS.gene034094:CDS |
TTGTTGCTGGTCATAATAAA+CGG | 0.482807 | 4.4:+89123856 | MS.gene034094:CDS |
AATACCAAAAGGCAAGGATC+AGG | 0.483853 | 4.4:+89131280 | MS.gene034094:CDS |
ATGACAAAGATAACAAGATC+TGG | 0.486961 | 4.4:-89130302 | None:intergenic |
GGGATCTAATAAGGACATGA+TGG | 0.488421 | 4.4:+89131762 | MS.gene034094:CDS |
CTCTGCAATATCTTGGATCC+TGG | 0.490760 | 4.4:+89127802 | MS.gene034094:CDS |
CAAGACTACCTTCCATAGAA+AGG | 0.491497 | 4.4:-89128294 | None:intergenic |
CTTATAATTGTTGATACTAG+TGG | 0.492017 | 4.4:+89130135 | MS.gene034094:CDS |
AATCTTGATGATCTTGCTGC+TGG | 0.492553 | 4.4:+89125305 | MS.gene034094:CDS |
CTAAAGCAAATTGGAGGAAT+GGG | 0.493593 | 4.4:+89131712 | MS.gene034094:CDS |
TGGCGGCGGTGGCGAGCAGT+AGG | 0.495152 | 4.4:+89131792 | MS.gene034094:CDS |
ATGGACTCAATGACAAATGA+AGG | 0.500602 | 4.4:+89131338 | MS.gene034094:CDS |
GTACATAATCCTCAAGGTAA+AGG | 0.502143 | 4.4:-89130986 | None:intergenic |
TAAACAGAGTGTTGCAGTTG+GGG | 0.502364 | 4.4:+89130370 | MS.gene034094:CDS |
AGGCAAGGATCAGGACAGCC+AGG | 0.513089 | 4.4:+89131289 | MS.gene034094:CDS |
GCTAAAGCAAATTGGAGGAA+TGG | 0.513724 | 4.4:+89131711 | MS.gene034094:CDS |
AGTTCAGGCTGTTGATCCAT+TGG | 0.517338 | 4.4:-89130940 | None:intergenic |
CCTAATAGACGACTGACAAA+TGG | 0.523880 | 4.4:-89130689 | None:intergenic |
CAGGCCAGGGAGACTTGTCT+GGG | 0.527597 | 4.4:+89130890 | MS.gene034094:intron |
TTATAATTGTTGATACTAGT+GGG | 0.532166 | 4.4:+89130136 | MS.gene034094:CDS |
AAGACTACCTTCCATAGAAA+GGG | 0.535158 | 4.4:-89128293 | None:intergenic |
AATCCATGAAGTTGTTCCAA+TGG | 0.540168 | 4.4:+89130924 | MS.gene034094:CDS |
AAAATGGATGGCCATGCAAA+GGG | 0.540546 | 4.4:+89130407 | MS.gene034094:CDS |
GATGGCCATGCAAAGGGTGG+TGG | 0.543431 | 4.4:+89130413 | MS.gene034094:CDS |
CTAAGATCCCTTTCTATGGA+AGG | 0.547864 | 4.4:+89128286 | MS.gene034094:CDS |
CCAGTTCCAATGAATATGAC+AGG | 0.549067 | 4.4:-89130629 | None:intergenic |
AAGATATGGAGCAAAATGAA+AGG | 0.553586 | 4.4:+89131601 | MS.gene034094:CDS |
GCGCACCACCACCCTTTGCA+TGG | 0.554323 | 4.4:-89130418 | None:intergenic |
GTATCTGCACATACTAGAGC+TGG | 0.555721 | 4.4:-89128216 | None:intergenic |
ACAAAGCTTGATGAAATCGA+TGG | 0.558585 | 4.4:+89131741 | MS.gene034094:CDS |
TGAACCCAGACAAGTCTCCC+TGG | 0.565640 | 4.4:-89130894 | None:intergenic |
TAAGCGTTACATGACAATGA+TGG | 0.566456 | 4.4:+89131319 | MS.gene034094:CDS |
AGATATGGAGCAAAATGAAA+GGG | 0.567829 | 4.4:+89131602 | MS.gene034094:CDS |
GACATGATGGGAATGTTTGG+CGG | 0.570743 | 4.4:+89131775 | MS.gene034094:CDS |
TTTAAACAGAGTGTTGCAGT+TGG | 0.570851 | 4.4:+89130368 | MS.gene034094:CDS |
TCGACAAGTTAGGGAAGTAA+TGG | 0.575282 | 4.4:+89131549 | MS.gene034094:CDS |
TGAATTAATACCAAAAGGCA+AGG | 0.579961 | 4.4:+89131274 | MS.gene034094:CDS |
CATTGGAACTGGAGAACACA+TGG | 0.583180 | 4.4:+89130640 | MS.gene034094:CDS |
CTGCTTAATAAGCTGCAAGA+AGG | 0.584033 | 4.4:+89130961 | MS.gene034094:CDS |
CAAAGCTTGATGAAATCGAT+GGG | 0.588981 | 4.4:+89131742 | MS.gene034094:CDS |
GGATCTAATAAGGACATGAT+GGG | 0.588990 | 4.4:+89131763 | MS.gene034094:CDS |
AACAAGCTTGAATTGAACAT+CGG | 0.590449 | 4.4:-89125249 | None:intergenic |
ATTTGCTTTAGCATCTGTGG+AGG | 0.599015 | 4.4:-89131700 | None:intergenic |
TGTGCAGATACATTCAGAGC+TGG | 0.600759 | 4.4:+89128228 | MS.gene034094:CDS |
AAGCAAATTGGAGGAATGGG+TGG | 0.601558 | 4.4:+89131715 | MS.gene034094:CDS |
CAGATGCTAAAGCAAATTGG+AGG | 0.603876 | 4.4:+89131706 | MS.gene034094:CDS |
GCGCCAAGTTTCAGAAGCAA+CGG | 0.604689 | 4.4:+89130194 | MS.gene034094:CDS |
GGGCTTAAAATACCAAAGAA+GGG | 0.608894 | 4.4:+89131622 | MS.gene034094:CDS |
TTTGCTTTAGCATCTGTGGA+GGG | 0.610701 | 4.4:-89131699 | None:intergenic |
GCTTTAGCATCTGTGGAGGG+AGG | 0.611539 | 4.4:-89131696 | None:intergenic |
AGCAAATTGGAGGAATGGGT+GGG | 0.615310 | 4.4:+89131716 | MS.gene034094:CDS |
AAGAAGGAACCTTTACCTTG+AGG | 0.616437 | 4.4:+89130977 | MS.gene034094:CDS |
ATGGTGCTCGCAGATTTAGG+AGG | 0.616535 | 4.4:+89123663 | MS.gene034094:CDS |
ATGGTGCTCGCAGATTTAGG+AGG | 0.616535 | 4.4:+89125125 | MS.gene034094:CDS |
CTGCTCGTACATAATCCTCA+AGG | 0.625136 | 4.4:-89130992 | None:intergenic |
ATGATGGGAATGTTTGGCGG+CGG | 0.634083 | 4.4:+89131778 | MS.gene034094:CDS |
TAAGATGGGTCCCATGAGCG+AGG | 0.637224 | 4.4:+89131029 | MS.gene034094:CDS |
CAAAGCTCATGAATGAGTCA+CGG | 0.644435 | 4.4:+89131500 | MS.gene034094:CDS |
TGGTGCTCGCAGATTTAGGA+GGG | 0.645588 | 4.4:+89123664 | MS.gene034094:CDS |
TGGTGCTCGCAGATTTAGGA+GGG | 0.645588 | 4.4:+89125126 | MS.gene034094:CDS |
CCTGTGAAAATTGCTGTGGA+AGG | 0.664105 | 4.4:+89130081 | MS.gene034094:CDS |
AGATCCTGTGAAAATTGCTG+TGG | 0.670741 | 4.4:+89130077 | MS.gene034094:CDS |
ATGGATGGCCATGCAAAGGG+TGG | 0.687249 | 4.4:+89130410 | MS.gene034094:CDS |
CGGATGATGCGTATAGCTCG+AGG | 0.687350 | 4.4:+89131520 | MS.gene034094:CDS |
TAATTGTTGATACTAGTGGG+CGG | 0.701070 | 4.4:+89130139 | MS.gene034094:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 89123663 | 89131813 | 89123663 | ID=MS.gene034094 |
chr4.4 | mRNA | 89123663 | 89131813 | 89123663 | ID=MS.gene034094.t1;Parent=MS.gene034094 |
chr4.4 | exon | 89123663 | 89123893 | 89123663 | ID=MS.gene034094.t1.exon1;Parent=MS.gene034094.t1 |
chr4.4 | CDS | 89123663 | 89123893 | 89123663 | ID=cds.MS.gene034094.t1;Parent=MS.gene034094.t1 |
chr4.4 | exon | 89125125 | 89125355 | 89125125 | ID=MS.gene034094.t1.exon2;Parent=MS.gene034094.t1 |
chr4.4 | CDS | 89125125 | 89125355 | 89125125 | ID=cds.MS.gene034094.t1;Parent=MS.gene034094.t1 |
chr4.4 | exon | 89127787 | 89127886 | 89127787 | ID=MS.gene034094.t1.exon3;Parent=MS.gene034094.t1 |
chr4.4 | CDS | 89127787 | 89127886 | 89127787 | ID=cds.MS.gene034094.t1;Parent=MS.gene034094.t1 |
chr4.4 | exon | 89128154 | 89128307 | 89128154 | ID=MS.gene034094.t1.exon4;Parent=MS.gene034094.t1 |
chr4.4 | CDS | 89128154 | 89128307 | 89128154 | ID=cds.MS.gene034094.t1;Parent=MS.gene034094.t1 |
chr4.4 | exon | 89130065 | 89130215 | 89130065 | ID=MS.gene034094.t1.exon5;Parent=MS.gene034094.t1 |
chr4.4 | CDS | 89130065 | 89130215 | 89130065 | ID=cds.MS.gene034094.t1;Parent=MS.gene034094.t1 |
chr4.4 | exon | 89130299 | 89130447 | 89130299 | ID=MS.gene034094.t1.exon6;Parent=MS.gene034094.t1 |
chr4.4 | CDS | 89130299 | 89130447 | 89130299 | ID=cds.MS.gene034094.t1;Parent=MS.gene034094.t1 |
chr4.4 | exon | 89130610 | 89130710 | 89130610 | ID=MS.gene034094.t1.exon7;Parent=MS.gene034094.t1 |
chr4.4 | CDS | 89130610 | 89130710 | 89130610 | ID=cds.MS.gene034094.t1;Parent=MS.gene034094.t1 |
chr4.4 | exon | 89130893 | 89131050 | 89130893 | ID=MS.gene034094.t1.exon8;Parent=MS.gene034094.t1 |
chr4.4 | CDS | 89130893 | 89131050 | 89130893 | ID=cds.MS.gene034094.t1;Parent=MS.gene034094.t1 |
chr4.4 | exon | 89131245 | 89131359 | 89131245 | ID=MS.gene034094.t1.exon9;Parent=MS.gene034094.t1 |
chr4.4 | CDS | 89131245 | 89131359 | 89131245 | ID=cds.MS.gene034094.t1;Parent=MS.gene034094.t1 |
chr4.4 | exon | 89131482 | 89131813 | 89131482 | ID=MS.gene034094.t1.exon10;Parent=MS.gene034094.t1 |
chr4.4 | CDS | 89131482 | 89131813 | 89131482 | ID=cds.MS.gene034094.t1;Parent=MS.gene034094.t1 |
Gene Sequence |
Protein sequence |