Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61154.t1 | XP_003604367.1 | 98.2 | 496 | 9 | 0 | 1 | 496 | 1 | 496 | 1.90E-274 | 954.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61154.t1 | P49972 | 90.3 | 497 | 44 | 1 | 1 | 493 | 1 | 497 | 2.9e-255 | 882.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61154.t1 | G7JGX1 | 98.2 | 496 | 9 | 0 | 1 | 496 | 1 | 496 | 1.4e-274 | 954.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene020350 | MS.gene61154 | PPI |
MS.gene018728 | MS.gene61154 | PPI |
MS.gene68613 | MS.gene61154 | PPI |
MS.gene050301 | MS.gene61154 | PPI |
MS.gene61154 | MS.gene007198 | PPI |
MS.gene61154 | MS.gene030142 | PPI |
MS.gene24695 | MS.gene61154 | PPI |
MS.gene38904 | MS.gene61154 | PPI |
MS.gene61154 | MS.gene97022 | PPI |
MS.gene26799 | MS.gene61154 | PPI |
MS.gene064159 | MS.gene61154 | PPI |
MS.gene23506 | MS.gene61154 | PPI |
MS.gene24730 | MS.gene61154 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61154.t1 | MTR_4g010050 | 98.185 | 496 | 9 | 0 | 1 | 496 | 1 | 496 | 0.0 | 1009 |
MS.gene61154.t1 | MTR_2g104050 | 76.673 | 493 | 91 | 2 | 1 | 493 | 1 | 469 | 0.0 | 775 |
MS.gene61154.t1 | MTR_7g085470 | 51.642 | 335 | 117 | 8 | 1 | 325 | 1 | 300 | 1.36e-97 | 297 |
MS.gene61154.t1 | MTR_7g085570 | 47.962 | 319 | 102 | 10 | 17 | 325 | 1 | 265 | 2.32e-75 | 239 |
MS.gene61154.t1 | MTR_7g104890 | 29.935 | 461 | 295 | 9 | 1 | 447 | 62 | 508 | 5.71e-58 | 201 |
MS.gene61154.t1 | MTR_7g104890 | 30.256 | 390 | 262 | 5 | 75 | 461 | 7 | 389 | 8.49e-55 | 189 |
MS.gene61154.t1 | MTR_8g032340 | 29.866 | 298 | 189 | 6 | 15 | 295 | 76 | 370 | 1.95e-27 | 113 |
MS.gene61154.t1 | MTR_4g130770 | 31.088 | 193 | 122 | 2 | 114 | 295 | 438 | 630 | 1.29e-25 | 110 |
MS.gene61154.t1 | MTR_4g010060 | 73.585 | 53 | 14 | 0 | 35 | 87 | 93 | 145 | 1.13e-17 | 80.5 |
MS.gene61154.t1 | MTR_4g010060 | 86.486 | 37 | 5 | 0 | 1 | 37 | 1 | 37 | 2.96e-12 | 64.7 |
MS.gene61154.t1 | MTR_8g032480 | 30.601 | 183 | 116 | 4 | 123 | 295 | 14 | 195 | 2.33e-15 | 75.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61154.t1 | AT1G48900 | 87.221 | 493 | 63 | 0 | 1 | 493 | 1 | 493 | 0.0 | 906 |
MS.gene61154.t1 | AT5G49500 | 77.465 | 497 | 110 | 1 | 1 | 495 | 1 | 497 | 0.0 | 796 |
MS.gene61154.t1 | AT1G15310 | 77.526 | 485 | 93 | 3 | 1 | 485 | 1 | 469 | 0.0 | 772 |
MS.gene61154.t1 | AT1G48900 | 85.349 | 430 | 60 | 2 | 1 | 430 | 1 | 427 | 0.0 | 768 |
MS.gene61154.t1 | AT5G49500 | 80.541 | 370 | 72 | 0 | 126 | 495 | 6 | 375 | 0.0 | 624 |
MS.gene61154.t1 | AT5G03940 | 29.245 | 424 | 282 | 5 | 6 | 421 | 81 | 494 | 2.20e-57 | 200 |
MS.gene61154.t1 | AT5G66970 | 42.105 | 171 | 96 | 2 | 1 | 171 | 1 | 168 | 1.85e-35 | 130 |
MS.gene61154.t1 | AT2G45770 | 30.303 | 297 | 187 | 5 | 15 | 295 | 73 | 365 | 1.31e-31 | 125 |
MS.gene61154.t1 | AT4G30600 | 31.088 | 193 | 122 | 2 | 114 | 295 | 441 | 633 | 1.41e-25 | 110 |
MS.gene61154.t1 | AT4G30600 | 31.088 | 193 | 122 | 2 | 114 | 295 | 441 | 633 | 1.41e-25 | 110 |
Find 106 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTATTACTTTGCAGCTATA+TGG | 0.228796 | 4.2:+90128512 | MS.gene61154:intron |
ATTAACAATCTTCTTAATAT+TGG | 0.234181 | 4.2:-90123399 | None:intergenic |
CCATTTGTCAGTCGTCTATT+AGG | 0.261155 | 4.2:+90129151 | MS.gene61154:CDS |
CGTGACTCATTCATGAGCTT+TGG | 0.261469 | 4.2:-90129968 | None:intergenic |
GAACTCATTTCTCCCTTCTT+TGG | 0.270678 | 4.2:-90130103 | None:intergenic |
AAGATGGTGCTCGCAGATTT+AGG | 0.285184 | 4.2:+90123236 | None:intergenic |
TCAGGCCAGGGAGACTTGTC+TGG | 0.286825 | 4.2:+90129351 | MS.gene61154:intron |
CTGTCCTGATCCTTGCCTTT+TGG | 0.304349 | 4.2:-90129746 | None:intergenic |
GAGGTTCTGGTCGACAAGTT+AGG | 0.324653 | 4.2:+90130008 | MS.gene61154:CDS |
GAAATCGATGGGATCTAATA+AGG | 0.327013 | 4.2:+90130222 | MS.gene61154:CDS |
TGCAGCTTATTAAGCAGTTC+AGG | 0.332627 | 4.2:-90129417 | None:intergenic |
GGAGTGAAAGCAGGCTTTCC+AGG | 0.340451 | 4.2:-90126256 | None:intergenic |
CAACACTCTGTTTAAATGCT+TGG | 0.344126 | 4.2:-90128823 | None:intergenic |
CCACAGATGCTAAAGCAAAT+TGG | 0.344130 | 4.2:+90130172 | MS.gene61154:CDS |
ATGCGTATAGCTCGAGGTTC+TGG | 0.344763 | 4.2:+90129995 | MS.gene61154:CDS |
GTGACTCATTCATGAGCTTT+GGG | 0.360788 | 4.2:-90129967 | None:intergenic |
AAAGCTAAGATCCCTTTCTA+TGG | 0.370177 | 4.2:+90126718 | MS.gene61154:CDS |
ATACCGTTGCTTCCGAAACT+TGG | 0.375298 | 4.2:-90128659 | None:intergenic |
TGAAGAAATGCGCCAAGTTT+CGG | 0.395551 | 4.2:+90128647 | MS.gene61154:CDS |
GACATTCATGTTTCGAGATA+AGG | 0.395944 | 4.2:-90130125 | None:intergenic |
GATCCATTGGAACAACTTCA+TGG | 0.399514 | 4.2:-90129389 | None:intergenic |
AACACTCTGTTTAAATGCTT+GGG | 0.406606 | 4.2:-90128822 | None:intergenic |
ATAGAAAGGGATCTTAGCTT+TGG | 0.412663 | 4.2:-90126716 | None:intergenic |
CAATGAGCTCTGCAATATCT+TGG | 0.413074 | 4.2:+90126231 | MS.gene61154:CDS |
GTTTCAGAATATTCTTAAGA+TGG | 0.414472 | 4.2:+90129476 | MS.gene61154:CDS |
CCCGTCATATTCATTGGAAC+TGG | 0.417778 | 4.2:+90129091 | MS.gene61154:CDS |
AAGGACATGATGGGAATGTT+TGG | 0.422905 | 4.2:+90130241 | MS.gene61154:CDS |
ATGGGAATGTTTGGCGGCGG+TGG | 0.436163 | 4.2:+90130250 | MS.gene61154:CDS |
ACAAGCGTCTCGCAAAGATA+TGG | 0.438419 | 4.2:+90130056 | MS.gene61154:CDS |
CCAATTTGCTTTAGCATCTG+TGG | 0.443903 | 4.2:-90130172 | None:intergenic |
TTTATCATCAAAAGAAAGGC+TGG | 0.445583 | 4.2:+90126626 | MS.gene61154:CDS |
AAGAGTCCCGTCATATTCAT+TGG | 0.446556 | 4.2:+90129085 | MS.gene61154:CDS |
TTTGAATGATTTCAGGATCT+GGG | 0.449312 | 4.2:+90126575 | MS.gene61154:intron |
TAGGGAAGTAATGGAGATGA+TGG | 0.449379 | 4.2:+90130027 | MS.gene61154:CDS |
TTTGTCATGGATAGCAGTAT+TGG | 0.450799 | 4.2:+90128779 | MS.gene61154:CDS |
CAAGATTACCTTCCATAGAA+AGG | 0.453471 | 4.2:-90126730 | None:intergenic |
AGGTTCTGGTCGACAAGTTA+GGG | 0.462023 | 4.2:+90130009 | MS.gene61154:CDS |
GGCCATGAATTAGTACCAAA+AGG | 0.464017 | 4.2:+90129731 | MS.gene61154:CDS |
GTCATGTTCGTTGGTTTACA+AGG | 0.464635 | 4.2:+90126301 | MS.gene61154:CDS |
AGGGCTTAAAATACCAAAGA+AGG | 0.470429 | 4.2:+90130090 | MS.gene61154:CDS |
AGATCTTGTTATCTTTGTCA+TGG | 0.480044 | 4.2:+90128766 | MS.gene61154:CDS |
TTTCAGAATATTCTTAAGAT+GGG | 0.482656 | 4.2:+90129477 | MS.gene61154:CDS |
CATGGATAGCAGTATTGGTC+AGG | 0.485878 | 4.2:+90128784 | MS.gene61154:CDS |
ATGACAAAGATAACAAGATC+TGG | 0.486961 | 4.2:-90128764 | None:intergenic |
GGGATCTAATAAGGACATGA+TGG | 0.488421 | 4.2:+90130231 | MS.gene61154:CDS |
CTCTGCAATATCTTGGATCC+TGG | 0.490760 | 4.2:+90126238 | MS.gene61154:CDS |
AGTACCAAAAGGCAAGGATC+AGG | 0.491706 | 4.2:+90129742 | MS.gene61154:CDS |
CTTATAATTGTTGATACTAG+TGG | 0.492017 | 4.2:+90128597 | MS.gene61154:CDS |
AATCTTGATGATCTTGCTGC+TGG | 0.492553 | 4.2:+90123419 | MS.gene61154:CDS |
CTAAAGCAAATTGGAGGAAT+GGG | 0.493593 | 4.2:+90130181 | MS.gene61154:CDS |
TGGCGGCGGTGGCGAGCAGT+AGG | 0.495152 | 4.2:+90130261 | MS.gene61154:CDS |
GCTAGTGTTGTCATGTTCGT+TGG | 0.496689 | 4.2:+90126292 | MS.gene61154:CDS |
ATGGACTCAATGACAAATGA+AGG | 0.500602 | 4.2:+90129800 | MS.gene61154:CDS |
GTACATAATCCTCAAGGTAA+AGG | 0.502143 | 4.2:-90129448 | None:intergenic |
AGGCAAGGATCAGGACAGCC+AGG | 0.513089 | 4.2:+90129751 | MS.gene61154:CDS |
GCTAAAGCAAATTGGAGGAA+TGG | 0.513724 | 4.2:+90130180 | MS.gene61154:CDS |
AAGATTACCTTCCATAGAAA+GGG | 0.516707 | 4.2:-90126729 | None:intergenic |
AGTTCAGGCTGTTGATCCAT+TGG | 0.517338 | 4.2:-90129402 | None:intergenic |
ACTAATTCATGGCCAAATCC+TGG | 0.519647 | 4.2:-90129722 | None:intergenic |
CCTAATAGACGACTGACAAA+TGG | 0.523880 | 4.2:-90129151 | None:intergenic |
CAGGCCAGGGAGACTTGTCT+GGG | 0.527597 | 4.2:+90129352 | MS.gene61154:intron |
TTATAATTGTTGATACTAGT+GGG | 0.532166 | 4.2:+90128598 | MS.gene61154:CDS |
AATCCATGAAGTTGTTCCAA+TGG | 0.540168 | 4.2:+90129386 | MS.gene61154:CDS |
AAAATGGATGGCCATGCAAA+GGG | 0.540546 | 4.2:+90128869 | MS.gene61154:CDS |
CTAAGATCCCTTTCTATGGA+AGG | 0.541043 | 4.2:+90126722 | MS.gene61154:CDS |
GATGGCCATGCAAAGGGTGG+TGG | 0.543431 | 4.2:+90128875 | MS.gene61154:CDS |
AAGATATGGAGCAAAATGAA+AGG | 0.553586 | 4.2:+90130070 | MS.gene61154:CDS |
GCGCACCACCACCCTTTGCA+TGG | 0.554323 | 4.2:-90128880 | None:intergenic |
GTATCTGCACATACTAGAGC+TGG | 0.555721 | 4.2:-90126652 | None:intergenic |
CCAGTTCCAATGAATATGAC+GGG | 0.558074 | 4.2:-90129091 | None:intergenic |
ACAAAGCTTGATGAAATCGA+TGG | 0.558585 | 4.2:+90130210 | MS.gene61154:CDS |
TGAACCCAGACAAGTCTCCC+TGG | 0.565640 | 4.2:-90129356 | None:intergenic |
TAAGCGTTACATGACAATGA+TGG | 0.566456 | 4.2:+90129781 | MS.gene61154:CDS |
AGATATGGAGCAAAATGAAA+GGG | 0.567829 | 4.2:+90130071 | MS.gene61154:CDS |
GACATGATGGGAATGTTTGG+CGG | 0.570743 | 4.2:+90130244 | MS.gene61154:CDS |
TTTAAACAGAGTGTTGCAGT+TGG | 0.573047 | 4.2:+90128830 | MS.gene61154:CDS |
TCGACAAGTTAGGGAAGTAA+TGG | 0.575282 | 4.2:+90130018 | MS.gene61154:CDS |
CATTGGAACTGGAGAACACA+TGG | 0.583180 | 4.2:+90129102 | MS.gene61154:CDS |
CTGCTTAATAAGCTGCAAGA+AGG | 0.584033 | 4.2:+90129423 | MS.gene61154:CDS |
CAAAGCTTGATGAAATCGAT+GGG | 0.588981 | 4.2:+90130211 | MS.gene61154:CDS |
GGATCTAATAAGGACATGAT+GGG | 0.588990 | 4.2:+90130232 | MS.gene61154:CDS |
AACAAGCTTGAATTGAACAT+CGG | 0.590449 | 4.2:-90123363 | None:intergenic |
TCCAGTTCCAATGAATATGA+CGG | 0.593096 | 4.2:-90129092 | None:intergenic |
ATTTGCTTTAGCATCTGTGG+AGG | 0.599015 | 4.2:-90130169 | None:intergenic |
TGAATTAGTACCAAAAGGCA+AGG | 0.600112 | 4.2:+90129736 | MS.gene61154:CDS |
TGTGCAGATACATTCAGAGC+TGG | 0.600759 | 4.2:+90126664 | MS.gene61154:CDS |
AAGCAAATTGGAGGAATGGG+TGG | 0.601558 | 4.2:+90130184 | MS.gene61154:CDS |
CAGATGCTAAAGCAAATTGG+AGG | 0.603876 | 4.2:+90130175 | MS.gene61154:CDS |
GCGCCAAGTTTCGGAAGCAA+CGG | 0.608253 | 4.2:+90128656 | MS.gene61154:CDS |
GGGCTTAAAATACCAAAGAA+GGG | 0.608894 | 4.2:+90130091 | MS.gene61154:CDS |
TTTGCTTTAGCATCTGTGGA+GGG | 0.610701 | 4.2:-90130168 | None:intergenic |
GCTTTAGCATCTGTGGAGGG+AGG | 0.611539 | 4.2:-90130165 | None:intergenic |
AGCAAATTGGAGGAATGGGT+GGG | 0.615310 | 4.2:+90130185 | MS.gene61154:CDS |
AAGAAGGAACCTTTACCTTG+AGG | 0.616437 | 4.2:+90129439 | MS.gene61154:CDS |
ATGGTGCTCGCAGATTTAGG+AGG | 0.616535 | 4.2:+90123239 | MS.gene61154:CDS |
CTGCTCGTACATAATCCTCA+AGG | 0.625136 | 4.2:-90129454 | None:intergenic |
ATGATGGGAATGTTTGGCGG+CGG | 0.634083 | 4.2:+90130247 | MS.gene61154:CDS |
GAAAATTGCTGTGGAAGGTG+TGG | 0.635052 | 4.2:+90128548 | MS.gene61154:CDS |
TAAGATGGGTCCCATGAGCG+AGG | 0.637224 | 4.2:+90129491 | MS.gene61154:CDS |
CAAAGCTCATGAATGAGTCA+CGG | 0.644435 | 4.2:+90129969 | MS.gene61154:CDS |
TGGTGCTCGCAGATTTAGGA+GGG | 0.645588 | 4.2:+90123240 | MS.gene61154:CDS |
CCTGTGAAAATTGCTGTGGA+AGG | 0.664105 | 4.2:+90128543 | MS.gene61154:CDS |
AGATCCTGTGAAAATTGCTG+TGG | 0.670741 | 4.2:+90128539 | MS.gene61154:CDS |
ATGGATGGCCATGCAAAGGG+TGG | 0.687249 | 4.2:+90128872 | MS.gene61154:CDS |
CGGATGATGCGTATAGCTCG+AGG | 0.687350 | 4.2:+90129989 | MS.gene61154:CDS |
TAATTGTTGATACTAGTGGG+CGG | 0.701070 | 4.2:+90128601 | MS.gene61154:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 90123239 | 90130282 | 90123239 | ID=MS.gene61154 |
chr4.2 | mRNA | 90123239 | 90130282 | 90123239 | ID=MS.gene61154.t1;Parent=MS.gene61154 |
chr4.2 | exon | 90123239 | 90123469 | 90123239 | ID=MS.gene61154.t1.exon1;Parent=MS.gene61154.t1 |
chr4.2 | CDS | 90123239 | 90123469 | 90123239 | ID=cds.MS.gene61154.t1;Parent=MS.gene61154.t1 |
chr4.2 | exon | 90126223 | 90126322 | 90126223 | ID=MS.gene61154.t1.exon2;Parent=MS.gene61154.t1 |
chr4.2 | CDS | 90126223 | 90126322 | 90126223 | ID=cds.MS.gene61154.t1;Parent=MS.gene61154.t1 |
chr4.2 | exon | 90126590 | 90126743 | 90126590 | ID=MS.gene61154.t1.exon3;Parent=MS.gene61154.t1 |
chr4.2 | CDS | 90126590 | 90126743 | 90126590 | ID=cds.MS.gene61154.t1;Parent=MS.gene61154.t1 |
chr4.2 | exon | 90128527 | 90128677 | 90128527 | ID=MS.gene61154.t1.exon4;Parent=MS.gene61154.t1 |
chr4.2 | CDS | 90128527 | 90128677 | 90128527 | ID=cds.MS.gene61154.t1;Parent=MS.gene61154.t1 |
chr4.2 | exon | 90128761 | 90128909 | 90128761 | ID=MS.gene61154.t1.exon5;Parent=MS.gene61154.t1 |
chr4.2 | CDS | 90128761 | 90128909 | 90128761 | ID=cds.MS.gene61154.t1;Parent=MS.gene61154.t1 |
chr4.2 | exon | 90129072 | 90129172 | 90129072 | ID=MS.gene61154.t1.exon6;Parent=MS.gene61154.t1 |
chr4.2 | CDS | 90129072 | 90129172 | 90129072 | ID=cds.MS.gene61154.t1;Parent=MS.gene61154.t1 |
chr4.2 | exon | 90129355 | 90129512 | 90129355 | ID=MS.gene61154.t1.exon7;Parent=MS.gene61154.t1 |
chr4.2 | CDS | 90129355 | 90129512 | 90129355 | ID=cds.MS.gene61154.t1;Parent=MS.gene61154.t1 |
chr4.2 | exon | 90129707 | 90129821 | 90129707 | ID=MS.gene61154.t1.exon8;Parent=MS.gene61154.t1 |
chr4.2 | CDS | 90129707 | 90129821 | 90129707 | ID=cds.MS.gene61154.t1;Parent=MS.gene61154.t1 |
chr4.2 | exon | 90129951 | 90130282 | 90129951 | ID=MS.gene61154.t1.exon9;Parent=MS.gene61154.t1 |
chr4.2 | CDS | 90129951 | 90130282 | 90129951 | ID=cds.MS.gene61154.t1;Parent=MS.gene61154.t1 |
Gene Sequence |
Protein sequence |