Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26930.t1 | AFK34559.1 | 95.2 | 311 | 15 | 0 | 1 | 311 | 39 | 349 | 4.80E-165 | 590.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26930.t1 | Q8L4Y2 | 64.4 | 315 | 110 | 1 | 1 | 315 | 38 | 350 | 7.3e-122 | 438.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26930.t1 | I3T0R4 | 95.2 | 311 | 15 | 0 | 1 | 311 | 39 | 349 | 3.4e-165 | 590.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene26930 | MS.gene45717 | PPI |
| MS.gene26930 | MS.gene003796 | PPI |
| MS.gene26930 | MS.gene056668 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26930.t1 | MTR_1g021925 | 98.071 | 311 | 6 | 0 | 1 | 311 | 39 | 349 | 0.0 | 634 |
| MS.gene26930.t1 | MTR_4g069140 | 63.462 | 312 | 113 | 1 | 3 | 314 | 41 | 351 | 4.17e-150 | 427 |
| MS.gene26930.t1 | MTR_1g052685 | 35.931 | 231 | 147 | 1 | 60 | 289 | 84 | 314 | 7.28e-47 | 162 |
| MS.gene26930.t1 | MTR_7g092280 | 33.333 | 249 | 160 | 2 | 59 | 301 | 83 | 331 | 7.96e-43 | 152 |
| MS.gene26930.t1 | MTR_2g097980 | 33.473 | 239 | 144 | 3 | 59 | 297 | 83 | 306 | 2.52e-38 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26930.t1 | AT1G75020 | 66.032 | 315 | 105 | 1 | 1 | 315 | 38 | 350 | 5.13e-163 | 459 |
| MS.gene26930.t1 | AT1G75020 | 66.032 | 315 | 105 | 1 | 1 | 315 | 38 | 350 | 5.13e-163 | 459 |
| MS.gene26930.t1 | AT3G18850 | 64.762 | 315 | 109 | 2 | 1 | 313 | 33 | 347 | 2.68e-153 | 435 |
| MS.gene26930.t1 | AT3G18850 | 64.762 | 315 | 109 | 2 | 1 | 313 | 33 | 347 | 2.68e-153 | 435 |
| MS.gene26930.t1 | AT3G18850 | 64.762 | 315 | 109 | 2 | 1 | 313 | 33 | 347 | 2.68e-153 | 435 |
| MS.gene26930.t1 | AT3G18850 | 64.762 | 315 | 109 | 2 | 1 | 313 | 33 | 347 | 2.68e-153 | 435 |
| MS.gene26930.t1 | AT3G18850 | 66.124 | 307 | 102 | 2 | 9 | 313 | 18 | 324 | 7.22e-153 | 433 |
| MS.gene26930.t1 | AT3G18850 | 60.199 | 201 | 78 | 2 | 115 | 313 | 16 | 216 | 4.62e-86 | 259 |
| MS.gene26930.t1 | AT3G57650 | 36.017 | 236 | 150 | 1 | 59 | 293 | 82 | 317 | 3.12e-47 | 164 |
| MS.gene26930.t1 | AT1G51260 | 30.798 | 263 | 178 | 3 | 32 | 290 | 53 | 315 | 9.94e-39 | 141 |
Find 64 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGCTTTAGTTTCAGAAAT+TGG | 0.158348 | 1.3:+3189113 | None:intergenic |
| ACAAAATCTTTCAACATTTC+AGG | 0.190346 | 1.3:-3190428 | MS.gene26930:CDS |
| AGGATCCGAAAGATCCTTTA+TGG | 0.230304 | 1.3:-3190408 | MS.gene26930:CDS |
| CAGAAGTCCACTTGCATATT+CGG | 0.261346 | 1.3:-3189157 | MS.gene26930:CDS |
| AAAGCAATTGGTCCTTGATT+TGG | 0.267935 | 1.3:+3189069 | None:intergenic |
| CTGAAACTAAAGCTGCTTCT+TGG | 0.278746 | 1.3:-3189106 | MS.gene26930:CDS |
| AAGGCAGTATCATTCTTCTT+TGG | 0.293370 | 1.3:-3190742 | MS.gene26930:CDS |
| TGGTTGGGGATTTCAGATTC+TGG | 0.302482 | 1.3:-3190500 | MS.gene26930:CDS |
| CTTTCGCCGCTTGCAGTTGT+AGG | 0.315648 | 1.3:-3190796 | MS.gene26930:CDS |
| CCAATTGCTTTCTGATTTCA+AGG | 0.330496 | 1.3:-3189057 | MS.gene26930:CDS |
| TAAAGCTGCTTCTTGGCTAA+TGG | 0.348528 | 1.3:-3189099 | MS.gene26930:CDS |
| TCATTGCAGTGGAGAGGAAA+TGG | 0.367397 | 1.3:-3190474 | MS.gene26930:CDS |
| GTTTCATTAAGCTGCTCTTA+AGG | 0.367606 | 1.3:+3190533 | None:intergenic |
| CTTTCTGATTTCAAGGTTCA+AGG | 0.386029 | 1.3:-3189050 | MS.gene26930:CDS |
| TATCATTCTTCTTTGGACTT+TGG | 0.386228 | 1.3:-3190735 | MS.gene26930:CDS |
| TACGTATAATCGGTTCCTTC+GGG | 0.405431 | 1.3:+3190373 | None:intergenic |
| ATCACAGAACTGAGGTTGAT+TGG | 0.411546 | 1.3:-3190612 | MS.gene26930:CDS |
| GATAGCCATAAAGGATCTTT+CGG | 0.432489 | 1.3:+3190403 | None:intergenic |
| CAAAACGTGGTGCCTGATGC+TGG | 0.432670 | 1.3:+3188444 | None:intergenic |
| GTACGTATAATCGGTTCCTT+CGG | 0.443486 | 1.3:+3190372 | None:intergenic |
| CTATCACGGTAAAAGTGAAT+AGG | 0.446000 | 1.3:+3188979 | None:intergenic |
| CCTTGAAATCAGAAAGCAAT+TGG | 0.447220 | 1.3:+3189057 | None:intergenic |
| ATCAACCTCAGTTCTGTGAT+TGG | 0.449343 | 1.3:+3190615 | None:intergenic |
| AAGGCTAATGCTCCAGCATC+AGG | 0.452238 | 1.3:-3188456 | MS.gene26930:CDS |
| GTGGGATCTTGCTCTTAGAA+AGG | 0.458545 | 1.3:-3190581 | MS.gene26930:CDS |
| AAAGGGGTTTCACACTTGCT+TGG | 0.459653 | 1.3:-3190026 | MS.gene26930:CDS |
| TTGGACTTTGGTTATCTATG+TGG | 0.460047 | 1.3:-3190723 | MS.gene26930:CDS |
| TTCGAGGTAGTACGTATAAT+CGG | 0.463252 | 1.3:+3190363 | None:intergenic |
| GAAATTGGAATCTCCTCTAC+AGG | 0.473130 | 1.3:+3189128 | None:intergenic |
| TGGGATCTTGCTCTTAGAAA+GGG | 0.490923 | 1.3:-3190580 | MS.gene26930:CDS |
| TTATCAGTATTCGTTATAGT+AGG | 0.491260 | 1.3:-3190765 | MS.gene26930:CDS |
| GGAAACTCTACAAGGCTCAT+TGG | 0.496811 | 1.3:-3190005 | MS.gene26930:CDS |
| CGCTTGCAGTTGTAGGATTG+CGG | 0.503380 | 1.3:-3190789 | MS.gene26930:CDS |
| GATTCTGGAATTCATTGCAG+TGG | 0.510533 | 1.3:-3190485 | MS.gene26930:CDS |
| ATGAGCCAGAGCTCTGTGTA+GGG | 0.515370 | 1.3:-3188485 | MS.gene26930:intron |
| CTACAAGGCTCATTGGATGC+AGG | 0.515831 | 1.3:-3189998 | MS.gene26930:intron |
| CATTGCAGTGGAGAGGAAAT+GGG | 0.521317 | 1.3:-3190473 | MS.gene26930:CDS |
| GGTTGATTGGATGTACTTGT+GGG | 0.523971 | 1.3:-3190599 | MS.gene26930:CDS |
| CGCAATCCTACAACTGCAAG+CGG | 0.528807 | 1.3:+3190790 | None:intergenic |
| AATGGATGCATTCCAAATCA+AGG | 0.541765 | 1.3:-3189081 | MS.gene26930:CDS |
| GCTCTTAGAAAGGGAAGACT+AGG | 0.543581 | 1.3:-3190571 | MS.gene26930:CDS |
| ATATGCAAGTGGACTTCTGA+AGG | 0.550458 | 1.3:+3189161 | None:intergenic |
| AGTAATACATTTGTCAGCAC+AGG | 0.552689 | 1.3:+3190058 | None:intergenic |
| CAGTATTCGTTATAGTAGGA+AGG | 0.557462 | 1.3:-3190761 | MS.gene26930:CDS |
| TGGGGATAGTATTCCGATGA+GGG | 0.559784 | 1.3:-3190656 | MS.gene26930:CDS |
| AAAACATTGTCTAGAAAGGA+AGG | 0.565471 | 1.3:+3189194 | None:intergenic |
| AGGTTGATTGGATGTACTTG+TGG | 0.569937 | 1.3:-3190600 | MS.gene26930:CDS |
| CATGAGCCAGAGCTCTGTGT+AGG | 0.572970 | 1.3:-3188486 | MS.gene26930:intron |
| AGTAACACACGTTCCCTCAT+CGG | 0.578657 | 1.3:+3190643 | None:intergenic |
| CCCTAACCAACAAAATGAAG+AGG | 0.579557 | 1.3:-3189021 | MS.gene26930:CDS |
| CAAGGTAAAATAAGTAAACA+AGG | 0.586845 | 1.3:+3188944 | None:intergenic |
| ATCGGGTTCAAGTTATATGT+AGG | 0.586979 | 1.3:-3188912 | MS.gene26930:intron |
| TGGAATTCATTGCAGTGGAG+AGG | 0.600003 | 1.3:-3190480 | MS.gene26930:CDS |
| CTGGGGATAGTATTCCGATG+AGG | 0.613140 | 1.3:-3190657 | MS.gene26930:CDS |
| GAGCCAGAGCTCTGTGTAGG+GGG | 0.615426 | 1.3:-3188483 | MS.gene26930:intron |
| ACTTGCTTGGAAACTCTACA+AGG | 0.626873 | 1.3:-3190013 | MS.gene26930:CDS |
| GAACCCGATGTGAGAAAACA+AGG | 0.629551 | 1.3:+3188926 | None:intergenic |
| TGAGCCAGAGCTCTGTGTAG+GGG | 0.629844 | 1.3:-3188484 | MS.gene26930:intron |
| TATTCGGCGTATTCCTGTAG+AGG | 0.633768 | 1.3:-3189141 | MS.gene26930:CDS |
| GGCGGTAAAACAAACTATCA+CGG | 0.635114 | 1.3:+3188965 | None:intergenic |
| GAATACGCCGAATATGCAAG+TGG | 0.679908 | 1.3:+3189150 | None:intergenic |
| ACATTTCATCTATCAAAACG+TGG | 0.730088 | 1.3:+3188431 | None:intergenic |
| TATCGCCAATCACAGAACTG+AGG | 0.748204 | 1.3:-3190620 | MS.gene26930:CDS |
| GGTAAAATAAGTAAACAAGG+CGG | 0.784862 | 1.3:+3188947 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTAATATTTGATACT+CGG | - | chr1.3:3189301-3189320 | MS.gene26930:intron | 10.0% |
| !! | ATAATATATTGTCTATTTGT+CGG | + | chr1.3:3189083-3189102 | None:intergenic | 15.0% |
| !! | ATGTCAAATAAAATAATTTG+TGG | + | chr1.3:3188996-3189015 | None:intergenic | 15.0% |
| !!! | AAAATTAATTTGTAATGAGT+TGG | + | chr1.3:3190687-3190706 | None:intergenic | 15.0% |
| !!! | AAATTAATTTGTAATGAGTT+GGG | + | chr1.3:3190686-3190705 | None:intergenic | 15.0% |
| !! | ATATGGAATATACACAAATT+CGG | + | chr1.3:3189828-3189847 | None:intergenic | 20.0% |
| !!! | TTTATCTTTTCGAATAGAAA+GGG | + | chr1.3:3188557-3188576 | None:intergenic | 20.0% |
| ! | ACAAAATCTTTCAACATTTC+AGG | - | chr1.3:3188826-3188845 | MS.gene26930:intron | 25.0% |
| ! | AGTCAAAATATTGCTCATAA+TGG | + | chr1.3:3189030-3189049 | None:intergenic | 25.0% |
| ! | CAAGGTAAAATAAGTAAACA+AGG | + | chr1.3:3190313-3190332 | None:intergenic | 25.0% |
| ! | CAATATATTATTCACTTCAG+TGG | - | chr1.3:3189092-3189111 | MS.gene26930:CDS | 25.0% |
| ! | GTATTACTTCCAAAAACAAA+GGG | - | chr1.3:3189211-3189230 | MS.gene26930:CDS | 25.0% |
| ! | GTCAATTCATAATGACTTTA+TGG | - | chr1.3:3189323-3189342 | MS.gene26930:intron | 25.0% |
| ! | TATTACTTCCAAAAACAAAG+GGG | - | chr1.3:3189212-3189231 | MS.gene26930:CDS | 25.0% |
| ! | TGTATTACTTCCAAAAACAA+AGG | - | chr1.3:3189210-3189229 | MS.gene26930:CDS | 25.0% |
| ! | TTACATTATGTGATCGAAAT+CGG | - | chr1.3:3189609-3189628 | MS.gene26930:intron | 25.0% |
| ! | TTAGAAAAGAAAAGAGACAA+GGG | + | chr1.3:3189954-3189973 | None:intergenic | 25.0% |
| ! | TTATCAGTATTCGTTATAGT+AGG | - | chr1.3:3188489-3188508 | MS.gene26930:intron | 25.0% |
| ! | TTTAGAAAAGAAAAGAGACA+AGG | + | chr1.3:3189955-3189974 | None:intergenic | 25.0% |
| !! | AAAACTAAAGTTGTCTTTTC+TGG | - | chr1.3:3188578-3188597 | MS.gene26930:intron | 25.0% |
| !! | AAACTAAAGTTGTCTTTTCT+GGG | - | chr1.3:3188579-3188598 | MS.gene26930:intron | 25.0% |
| !! | AAAGGTCAAATGTACAATTT+TGG | - | chr1.3:3190487-3190506 | MS.gene26930:CDS | 25.0% |
| !! | AAGGTCAAATGTACAATTTT+GGG | - | chr1.3:3190488-3190507 | MS.gene26930:CDS | 25.0% |
| !! | ATAATAGTTGATGCTATCTT+AGG | + | chr1.3:3190713-3190732 | None:intergenic | 25.0% |
| !! | CATAGTGTTCTCAATTTTAA+AGG | - | chr1.3:3190469-3190488 | MS.gene26930:CDS | 25.0% |
| !! | GTTTATCTTTTCGAATAGAA+AGG | + | chr1.3:3188558-3188577 | None:intergenic | 25.0% |
| !!! | TGTTCAACAATATTTTGACA+TGG | - | chr1.3:3189903-3189922 | MS.gene26930:intron | 25.0% |
| !!! | TTAATGAAACTACCGATTTT+TGG | - | chr1.3:3188734-3188753 | MS.gene26930:intron | 25.0% |
| AAAACATTGTCTAGAAAGGA+AGG | + | chr1.3:3190063-3190082 | None:intergenic | 30.0% | |
| AAATGCACAATGTTACAAAC+TGG | - | chr1.3:3190516-3190535 | MS.gene26930:CDS | 30.0% | |
| ACCAAAAACATTGTCTAGAA+AGG | + | chr1.3:3190067-3190086 | None:intergenic | 30.0% | |
| AGAAACTGCAAAGATACATT+TGG | + | chr1.3:3189475-3189494 | None:intergenic | 30.0% | |
| ATATTCCATATCATTCCCTA+GGG | - | chr1.3:3189837-3189856 | MS.gene26930:intron | 30.0% | |
| GCATGTACATAATCTGTTAA+AGG | + | chr1.3:3190420-3190439 | None:intergenic | 30.0% | |
| GGTAAAATAAGTAAACAAGG+CGG | + | chr1.3:3190310-3190329 | None:intergenic | 30.0% | |
| TAGAAAAGAAAAGAGACAAG+GGG | + | chr1.3:3189953-3189972 | None:intergenic | 30.0% | |
| TATATTCCATATCATTCCCT+AGG | - | chr1.3:3189836-3189855 | MS.gene26930:intron | 30.0% | |
| TATCATTCTTCTTTGGACTT+TGG | - | chr1.3:3188519-3188538 | MS.gene26930:intron | 30.0% | |
| TCTCTGTTACCAAAATGTAA+TGG | - | chr1.3:3189369-3189388 | MS.gene26930:intron | 30.0% | |
| ! | AACTAAAGTTGTCTTTTCTG+GGG | - | chr1.3:3188580-3188599 | MS.gene26930:intron | 30.0% |
| ! | AGAATTCCTCTTCATTTTGT+TGG | + | chr1.3:3190242-3190261 | None:intergenic | 30.0% |
| ! | TCCTTTCTAGACAATGTTTT+TGG | - | chr1.3:3190063-3190082 | MS.gene26930:CDS | 30.0% |
| !! | TTACCAAAATGTAATGGACT+TGG | - | chr1.3:3189375-3189394 | MS.gene26930:intron | 30.0% |
| !!! | TTTACCTTGTTTTCTCACAT+CGG | - | chr1.3:3190324-3190343 | MS.gene26930:intron | 30.0% |
| AAAGCAATTGGTCCTTGATT+TGG | + | chr1.3:3190188-3190207 | None:intergenic | 35.0% | |
| AAGGCAGTATCATTCTTCTT+TGG | - | chr1.3:3188512-3188531 | MS.gene26930:intron | 35.0% | |
| AATGGATGCATTCCAAATCA+AGG | - | chr1.3:3190173-3190192 | MS.gene26930:intron | 35.0% | |
| AGTAATACATTTGTCAGCAC+AGG | + | chr1.3:3189199-3189218 | None:intergenic | 35.0% | |
| ATGCATTGAAACTCATTCTC+AGG | - | chr1.3:3190579-3190598 | MS.gene26930:CDS | 35.0% | |
| CAGTATTCGTTATAGTAGGA+AGG | - | chr1.3:3188493-3188512 | MS.gene26930:intron | 35.0% | |
| CCAATTGCTTTCTGATTTCA+AGG | - | chr1.3:3190197-3190216 | MS.gene26930:intron | 35.0% | |
| CCTTGAAATCAGAAAGCAAT+TGG | + | chr1.3:3190200-3190219 | None:intergenic | 35.0% | |
| CTATCACGGTAAAAGTGAAT+AGG | + | chr1.3:3190278-3190297 | None:intergenic | 35.0% | |
| CTTTCTGATTTCAAGGTTCA+AGG | - | chr1.3:3190204-3190223 | MS.gene26930:intron | 35.0% | |
| GAAGGTTCAAATTTCAAGCT+CGG | - | chr1.3:3189684-3189703 | MS.gene26930:intron | 35.0% | |
| GATAGCCATAAAGGATCTTT+CGG | + | chr1.3:3188854-3188873 | None:intergenic | 35.0% | |
| GGAAAAAGAGATAGCCATAA+AGG | + | chr1.3:3188863-3188882 | None:intergenic | 35.0% | |
| GTTTCATTAAGCTGCTCTTA+AGG | + | chr1.3:3188724-3188743 | None:intergenic | 35.0% | |
| TACAGGGTAAATTCAAAGCA+AGG | + | chr1.3:3189535-3189554 | None:intergenic | 35.0% | |
| TCAAAATCTGCATTCAAACC+TGG | - | chr1.3:3189732-3189751 | MS.gene26930:intron | 35.0% | |
| TGAAATCCCCAACCAAAAAT+CGG | + | chr1.3:3188749-3188768 | None:intergenic | 35.0% | |
| TGATATCAGAAGTCTAAGCA+AGG | + | chr1.3:3190559-3190578 | None:intergenic | 35.0% | |
| TTCAGTTCCAAACGTATGTT+CGG | - | chr1.3:3189429-3189448 | MS.gene26930:intron | 35.0% | |
| TTCGAGGTAGTACGTATAAT+CGG | + | chr1.3:3188894-3188913 | None:intergenic | 35.0% | |
| TTGGACTTTGGTTATCTATG+TGG | - | chr1.3:3188531-3188550 | MS.gene26930:intron | 35.0% | |
| TTTGGATCCAAACATACGTT+TGG | + | chr1.3:3189457-3189476 | None:intergenic | 35.0% | |
| ! | AAACCAAGTTTGCTTTCACT+AGG | - | chr1.3:3189880-3189899 | MS.gene26930:intron | 35.0% |
| ! | AAGCCAAGTCCATTACATTT+TGG | + | chr1.3:3189381-3189400 | None:intergenic | 35.0% |
| ! | ATCGGGTTCAAGTTATATGT+AGG | - | chr1.3:3190342-3190361 | MS.gene26930:intron | 35.0% |
| ! | GACTAACTTGTAGTTTCGAT+GGG | - | chr1.3:3190627-3190646 | MS.gene26930:CDS | 35.0% |
| ! | GCAGCTTTAGTTTCAGAAAT+TGG | + | chr1.3:3190144-3190163 | None:intergenic | 35.0% |
| ! | TAACACGATGCACGTATTTT+AGG | + | chr1.3:3189058-3189077 | None:intergenic | 35.0% |
| ! | TTGCTTTGAATTTACCCTGT+AGG | - | chr1.3:3189534-3189553 | MS.gene26930:intron | 35.0% |
| !! | CAAAAATTTGCTGCTGAAGT+TGG | - | chr1.3:3189169-3189188 | MS.gene26930:CDS | 35.0% |
| !! | CATTTTGTTGGTTAGGGAAA+TGG | + | chr1.3:3190230-3190249 | None:intergenic | 35.0% |
| !! | CCTCTTCATTTTGTTGGTTA+GGG | + | chr1.3:3190236-3190255 | None:intergenic | 35.0% |
| !! | TCCTCTTCATTTTGTTGGTT+AGG | + | chr1.3:3190237-3190256 | None:intergenic | 35.0% |
| !!! | AAACTACCGATTTTTGGTTG+GGG | - | chr1.3:3188740-3188759 | MS.gene26930:intron | 35.0% |
| !!! | CTCTGTGTTTTTTGCTTTAG+GGG | - | chr1.3:3189560-3189579 | MS.gene26930:intron | 35.0% |
| !!! | GAAACTACCGATTTTTGGTT+GGG | - | chr1.3:3188739-3188758 | MS.gene26930:intron | 35.0% |
| !!! | GCTCTGTGTTTTTTGCTTTA+GGG | - | chr1.3:3189559-3189578 | MS.gene26930:intron | 35.0% |
| !!! | TGAAACTACCGATTTTTGGT+TGG | - | chr1.3:3188738-3188757 | MS.gene26930:intron | 35.0% |
| !!! | TGCTCTGTGTTTTTTGCTTT+AGG | - | chr1.3:3189558-3189577 | MS.gene26930:intron | 35.0% |
| !!! | TTACCTTGTTTTCTCACATC+GGG | - | chr1.3:3190325-3190344 | MS.gene26930:intron | 35.0% |
| AAAAGAGACAAGGGGAAAGT+TGG | + | chr1.3:3189945-3189964 | None:intergenic | 40.0% | |
| ACACCTAGTGAAAGCAAACT+TGG | + | chr1.3:3189886-3189905 | None:intergenic | 40.0% | |
| ACTTGCTTGGAAACTCTACA+AGG | - | chr1.3:3189241-3189260 | MS.gene26930:intron | 40.0% | |
| AGGATCCGAAAGATCCTTTA+TGG | - | chr1.3:3188846-3188865 | MS.gene26930:intron | 40.0% | |
| ATCAACCTCAGTTCTGTGAT+TGG | + | chr1.3:3188642-3188661 | None:intergenic | 40.0% | |
| CAGAAGTCCACTTGCATATT+CGG | - | chr1.3:3190097-3190116 | MS.gene26930:CDS | 40.0% | |
| CATGCATCCAGTTAGCATAT+TGG | + | chr1.3:3189784-3189803 | None:intergenic | 40.0% | |
| CCCTAACCAACAAAATGAAG+AGG | - | chr1.3:3190233-3190252 | MS.gene26930:intron | 40.0% | |
| CTGAAACTAAAGCTGCTTCT+TGG | - | chr1.3:3190148-3190167 | MS.gene26930:intron | 40.0% | |
| GAAATTGGAATCTCCTCTAC+AGG | + | chr1.3:3190129-3190148 | None:intergenic | 40.0% | |
| GGCGGTAAAACAAACTATCA+CGG | + | chr1.3:3190292-3190311 | None:intergenic | 40.0% | |
| GGTCGTTGTTCGATCAAAAT+CGG | - | chr1.3:3189662-3189681 | MS.gene26930:intron | 40.0% | |
| GGTTGATTGGATGTACTTGT+GGG | - | chr1.3:3188655-3188674 | MS.gene26930:intron | 40.0% | |
| GTTGTTCGATCAAAATCGGA+AGG | - | chr1.3:3189666-3189685 | MS.gene26930:intron | 40.0% | |
| TAAAGCTGCTTCTTGGCTAA+TGG | - | chr1.3:3190155-3190174 | MS.gene26930:intron | 40.0% | |
| TGGGATCTTGCTCTTAGAAA+GGG | - | chr1.3:3188674-3188693 | MS.gene26930:intron | 40.0% | |
| TTCGGATCCAAACGTATGTT+TGG | - | chr1.3:3189447-3189466 | MS.gene26930:intron | 40.0% | |
| TTTGGATCCGAACATACGTT+TGG | + | chr1.3:3189439-3189458 | None:intergenic | 40.0% | |
| ! | AAAAACACAGAGCATCCTAC+AGG | + | chr1.3:3189552-3189571 | None:intergenic | 40.0% |
| ! | AAAACACAGAGCATCCTACA+GGG | + | chr1.3:3189551-3189570 | None:intergenic | 40.0% |
| ! | AGGTTGATTGGATGTACTTG+TGG | - | chr1.3:3188654-3188673 | MS.gene26930:intron | 40.0% |
| ! | ATATGCAAGTGGACTTCTGA+AGG | + | chr1.3:3190096-3190115 | None:intergenic | 40.0% |
| ! | ATCACAGAACTGAGGTTGAT+TGG | - | chr1.3:3188642-3188661 | MS.gene26930:intron | 40.0% |
| ! | CGACTAACTTGTAGTTTCGA+TGG | - | chr1.3:3190626-3190645 | MS.gene26930:CDS | 40.0% |
| ! | CTTTAGGGGTGGATTTCTTT+AGG | - | chr1.3:3189574-3189593 | MS.gene26930:intron | 40.0% |
| ! | GTACGTATAATCGGTTCCTT+CGG | + | chr1.3:3188885-3188904 | None:intergenic | 40.0% |
| ! | TACGTATAATCGGTTCCTTC+GGG | + | chr1.3:3188884-3188903 | None:intergenic | 40.0% |
| !! | GATTCTGGAATTCATTGCAG+TGG | - | chr1.3:3188769-3188788 | MS.gene26930:intron | 40.0% |
| !! | GATTTTGATCGAACAACGAC+CGG | + | chr1.3:3189663-3189682 | None:intergenic | 40.0% |
| !!! | GTGTGAAACCCCTTTGTTTT+TGG | + | chr1.3:3189223-3189242 | None:intergenic | 40.0% |
| !!! | TGTGTTTTTTGCTTTAGGGG+TGG | - | chr1.3:3189563-3189582 | MS.gene26930:intron | 40.0% |
| AAAGGGGTTTCACACTTGCT+TGG | - | chr1.3:3189228-3189247 | MS.gene26930:CDS | 45.0% | |
| AACTAGCATTCTGCTTCCCT+AGG | + | chr1.3:3189856-3189875 | None:intergenic | 45.0% | |
| ACGACCACCAATATGCTAAC+TGG | - | chr1.3:3189774-3189793 | MS.gene26930:intron | 45.0% | |
| ACTAGCATTCTGCTTCCCTA+GGG | + | chr1.3:3189855-3189874 | None:intergenic | 45.0% | |
| AGTAACACACGTTCCCTCAT+CGG | + | chr1.3:3188614-3188633 | None:intergenic | 45.0% | |
| CATTGCAGTGGAGAGGAAAT+GGG | - | chr1.3:3188781-3188800 | MS.gene26930:intron | 45.0% | |
| GAACCCGATGTGAGAAAACA+AGG | + | chr1.3:3190331-3190350 | None:intergenic | 45.0% | |
| GAATACGCCGAATATGCAAG+TGG | + | chr1.3:3190107-3190126 | None:intergenic | 45.0% | |
| GCATCCAGTTAGCATATTGG+TGG | + | chr1.3:3189781-3189800 | None:intergenic | 45.0% | |
| GCTCTTAGAAAGGGAAGACT+AGG | - | chr1.3:3188683-3188702 | MS.gene26930:intron | 45.0% | |
| GGAAACTCTACAAGGCTCAT+TGG | - | chr1.3:3189249-3189268 | MS.gene26930:intron | 45.0% | |
| GTCGTTGGATCGAGATCAAA+CGG | + | chr1.3:3189759-3189778 | None:intergenic | 45.0% | |
| GTGGGATCTTGCTCTTAGAA+AGG | - | chr1.3:3188673-3188692 | MS.gene26930:intron | 45.0% | |
| TATCGCCAATCACAGAACTG+AGG | - | chr1.3:3188634-3188653 | MS.gene26930:intron | 45.0% | |
| TATTCGGCGTATTCCTGTAG+AGG | - | chr1.3:3190113-3190132 | MS.gene26930:intron | 45.0% | |
| TCATTGCAGTGGAGAGGAAA+TGG | - | chr1.3:3188780-3188799 | MS.gene26930:intron | 45.0% | |
| TGCTTCCCTAGGGAATGATA+TGG | + | chr1.3:3189845-3189864 | None:intergenic | 45.0% | |
| TGGAATTCATTGCAGTGGAG+AGG | - | chr1.3:3188774-3188793 | MS.gene26930:intron | 45.0% | |
| TGGGGATAGTATTCCGATGA+GGG | - | chr1.3:3188598-3188617 | MS.gene26930:intron | 45.0% | |
| TGGTTGGGGATTTCAGATTC+TGG | - | chr1.3:3188754-3188773 | MS.gene26930:intron | 45.0% | |
| ! | GTTAGCATATTGGTGGTCGT+TGG | + | chr1.3:3189774-3189793 | None:intergenic | 45.0% |
| ! | TGGCTATCTCTTTTTCCCGA+AGG | - | chr1.3:3188866-3188885 | MS.gene26930:intron | 45.0% |
| !! | CAAATATTAAAAAAATTAAA+AGG | + | chr1.3:3189296-3189315 | None:intergenic | 5.0% |
| AAGGCTAATGCTCCAGCATC+AGG | - | chr1.3:3190798-3190817 | MS.gene26930:CDS | 50.0% | |
| ACCTCGAATCCTTCTCAGCT+CGG | - | chr1.3:3188906-3188925 | MS.gene26930:intron | 50.0% | |
| AGATGAGATCCGAGCTGAGA+AGG | + | chr1.3:3188918-3188937 | None:intergenic | 50.0% | |
| ATGAGCCAGAGCTCTGTGTA+GGG | - | chr1.3:3190769-3190788 | MS.gene26930:CDS | 50.0% | |
| CGCAATCCTACAACTGCAAG+CGG | + | chr1.3:3188467-3188486 | None:intergenic | 50.0% | |
| CGCTTGCAGTTGTAGGATTG+CGG | - | chr1.3:3188465-3188484 | MS.gene26930:CDS | 50.0% | |
| CTACAAGGCTCATTGGATGC+AGG | - | chr1.3:3189256-3189275 | MS.gene26930:intron | 50.0% | |
| CTGGGGATAGTATTCCGATG+AGG | - | chr1.3:3188597-3188616 | MS.gene26930:intron | 50.0% | |
| ATTCCACGCATTCAGCACGC+CGG | - | chr1.3:3189641-3189660 | MS.gene26930:intron | 55.0% | |
| CAAAACGTGGTGCCTGATGC+TGG | + | chr1.3:3190813-3190832 | None:intergenic | 55.0% | |
| CATGAGCCAGAGCTCTGTGT+AGG | - | chr1.3:3190768-3190787 | MS.gene26930:CDS | 55.0% | |
| CTTTCGCCGCTTGCAGTTGT+AGG | - | chr1.3:3188458-3188477 | MS.gene26930:CDS | 55.0% | |
| GCTCTGTGTAGGGGGTAAGA+AGG | - | chr1.3:3190779-3190798 | MS.gene26930:CDS | 55.0% | |
| GGATCGAGATCAAACGGTCC+AGG | + | chr1.3:3189753-3189772 | None:intergenic | 55.0% | |
| TCCGAGCTGAGAAGGATTCG+AGG | + | chr1.3:3188910-3188929 | None:intergenic | 55.0% | |
| TGAGCCAGAGCTCTGTGTAG+GGG | - | chr1.3:3190770-3190789 | MS.gene26930:CDS | 55.0% | |
| TTACCCCCTACACAGAGCTC+TGG | + | chr1.3:3190777-3190796 | None:intergenic | 55.0% | |
| GAGCCAGAGCTCTGTGTAGG+GGG | - | chr1.3:3190771-3190790 | MS.gene26930:CDS | 60.0% | |
| CGACCGGCGTGCTGAATGCG+TGG | + | chr1.3:3189647-3189666 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 3188443 | 3190833 | 3188443 | ID=MS.gene26930 |
| chr1.3 | mRNA | 3188443 | 3190833 | 3188443 | ID=MS.gene26930.t1;Parent=MS.gene26930 |
| chr1.3 | exon | 3190376 | 3190833 | 3190376 | ID=MS.gene26930.t1.exon1;Parent=MS.gene26930.t1 |
| chr1.3 | CDS | 3190376 | 3190833 | 3190376 | ID=cds.MS.gene26930.t1;Parent=MS.gene26930.t1 |
| chr1.3 | exon | 3189999 | 3190129 | 3189999 | ID=MS.gene26930.t1.exon2;Parent=MS.gene26930.t1 |
| chr1.3 | CDS | 3189999 | 3190129 | 3189999 | ID=cds.MS.gene26930.t1;Parent=MS.gene26930.t1 |
| chr1.3 | exon | 3188913 | 3189251 | 3188913 | ID=MS.gene26930.t1.exon3;Parent=MS.gene26930.t1 |
| chr1.3 | CDS | 3188913 | 3189251 | 3188913 | ID=cds.MS.gene26930.t1;Parent=MS.gene26930.t1 |
| chr1.3 | exon | 3188443 | 3188498 | 3188443 | ID=MS.gene26930.t1.exon4;Parent=MS.gene26930.t1 |
| chr1.3 | CDS | 3188443 | 3188498 | 3188443 | ID=cds.MS.gene26930.t1;Parent=MS.gene26930.t1 |
| Gene Sequence |
| Protein sequence |
