Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26956.t1 | XP_013466090.1 | 52.8 | 265 | 9 | 1 | 1 | 149 | 3 | 267 | 6.10E-63 | 250.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26956.t1 | A0A072VEU8 | 52.8 | 265 | 9 | 1 | 1 | 149 | 33 | 297 | 4.4e-63 | 250.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053301 | MS.gene26956 | 0.809415 | 1.91E-50 | -1.69E-46 |
| MS.gene055701 | MS.gene26956 | 0.804826 | 1.79E-49 | -1.69E-46 |
| MS.gene055926 | MS.gene26956 | 0.803834 | 2.89E-49 | -1.69E-46 |
| MS.gene05761 | MS.gene26956 | 0.804272 | 2.34E-49 | -1.69E-46 |
| MS.gene06052 | MS.gene26956 | 0.811617 | 6.40E-51 | -1.69E-46 |
| MS.gene060683 | MS.gene26956 | 0.811862 | 5.66E-51 | -1.69E-46 |
| MS.gene060685 | MS.gene26956 | 0.80641 | 8.34E-50 | -1.69E-46 |
| MS.gene060802 | MS.gene26956 | 0.801115 | 1.05E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26956.t1 | MTR_1g022190 | 56.329 | 158 | 49 | 2 | 1 | 140 | 28 | 183 | 1.19e-51 | 166 |
| MS.gene26956.t1 | MTR_1g022190 | 83.673 | 49 | 8 | 0 | 70 | 118 | 213 | 261 | 1.15e-21 | 88.6 |
| MS.gene26956.t1 | MTR_1g022190 | 56.329 | 158 | 49 | 2 | 1 | 140 | 3 | 158 | 4.13e-51 | 166 |
| MS.gene26956.t1 | MTR_1g022190 | 86.250 | 80 | 11 | 0 | 70 | 149 | 188 | 267 | 1.23e-45 | 152 |
| MS.gene26956.t1 | MTR_1g022190 | 56.329 | 158 | 49 | 2 | 1 | 140 | 28 | 183 | 5.56e-51 | 166 |
| MS.gene26956.t1 | MTR_1g022190 | 86.250 | 80 | 11 | 0 | 70 | 149 | 213 | 292 | 1.80e-45 | 152 |
| MS.gene26956.t1 | MTR_1g022190 | 56.329 | 158 | 49 | 2 | 1 | 140 | 33 | 188 | 7.39e-51 | 166 |
| MS.gene26956.t1 | MTR_1g022190 | 86.250 | 80 | 11 | 0 | 70 | 149 | 218 | 297 | 2.15e-45 | 152 |
| MS.gene26956.t1 | MTR_4g070020 | 43.210 | 81 | 39 | 3 | 1 | 80 | 1 | 75 | 3.20e-12 | 63.2 |
| MS.gene26956.t1 | MTR_4g070020 | 43.210 | 81 | 39 | 3 | 1 | 80 | 1 | 75 | 5.38e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26956.t1 | AT1G19400 | 42.857 | 70 | 32 | 1 | 40 | 109 | 32 | 93 | 4.89e-12 | 62.4 |
| MS.gene26956.t1 | AT1G19400 | 42.857 | 70 | 32 | 1 | 40 | 109 | 32 | 93 | 7.27e-12 | 62.4 |
| MS.gene26956.t1 | AT1G19400 | 42.857 | 70 | 32 | 1 | 40 | 109 | 32 | 93 | 7.27e-12 | 62.4 |
| MS.gene26956.t1 | AT1G19400 | 42.857 | 70 | 32 | 1 | 40 | 109 | 32 | 93 | 7.27e-12 | 62.4 |
| MS.gene26956.t1 | AT1G75180 | 40.196 | 102 | 52 | 4 | 70 | 167 | 196 | 292 | 7.63e-11 | 59.7 |
| MS.gene26956.t1 | AT1G75180 | 40.196 | 102 | 52 | 4 | 70 | 167 | 196 | 292 | 7.63e-11 | 59.7 |
Find 26 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTCAGATGTTTCATATTC+TGG | 0.154223 | 1.3:-2864921 | None:intergenic |
| TTGTAATGCTCTTCTTCTTC+TGG | 0.227081 | 1.3:-2866916 | None:intergenic |
| AAGAGTGTATCAAGACTTAA+AGG | 0.234567 | 1.3:-2864495 | None:intergenic |
| AAGTCTTGATACACTCTTAG+AGG | 0.280942 | 1.3:+2864500 | MS.gene26956:CDS |
| AAAAGTTTAATTGTCGTCAT+TGG | 0.340057 | 1.3:+2867387 | MS.gene26956:CDS |
| ATTGCAGGAAGAAACATAAT+AGG | 0.362814 | 1.3:+2864874 | MS.gene26956:CDS |
| GGACACTGCAGATCAATTGC+AGG | 0.447539 | 1.3:+2864859 | MS.gene26956:intron |
| TCAAACCAAGGTAATGGAAA+TGG | 0.447940 | 1.3:-2864393 | None:intergenic |
| TATCTATATATCCTTCCCTT+TGG | 0.458465 | 1.3:-2866951 | None:intergenic |
| AAGGGAAGGATATATAGATA+TGG | 0.466582 | 1.3:+2866954 | MS.gene26956:CDS |
| AATTACCATTTCCATTACCT+TGG | 0.495076 | 1.3:+2864388 | MS.gene26956:CDS |
| CTTACATCAAACCAAGGTAA+TGG | 0.498937 | 1.3:-2864399 | None:intergenic |
| GATGTTTGTGATCATGATCA+TGG | 0.514929 | 1.3:+2864951 | MS.gene26956:CDS |
| TTGATGCATGATGGATCATA+AGG | 0.533713 | 1.3:-2864366 | None:intergenic |
| CAACAACATGTATTGCCAAA+GGG | 0.547747 | 1.3:+2866936 | MS.gene26956:CDS |
| TGATCATGGACTTGTTTCAC+AGG | 0.556098 | 1.3:+2864965 | MS.gene26956:CDS |
| AATGGTAATTTGATGCATGA+TGG | 0.559360 | 1.3:-2864375 | None:intergenic |
| GGATATATAGATATGGAAGA+TGG | 0.561870 | 1.3:+2866961 | MS.gene26956:CDS |
| AACATGTATTGCCAAAGGGA+AGG | 0.589506 | 1.3:+2866940 | MS.gene26956:CDS |
| ACAACAACATGTATTGCCAA+AGG | 0.592557 | 1.3:+2866935 | MS.gene26956:CDS |
| TATGATGCATCATCATGCAA+TGG | 0.618243 | 1.3:+2864300 | MS.gene26956:CDS |
| GATGCATCATCATGCAATGG+AGG | 0.630369 | 1.3:+2864303 | MS.gene26956:CDS |
| ACAACACTTCTGTATGAATG+TGG | 0.643795 | 1.3:+2867416 | MS.gene26956:CDS |
| TAATAGGAAAGTGTGCATGT+TGG | 0.650786 | 1.3:+2864890 | MS.gene26956:CDS |
| AAAACTCTTACATCAAACCA+AGG | 0.678998 | 1.3:-2864405 | None:intergenic |
| TGATGAAGATATAGAAACTG+TGG | 0.687408 | 1.3:-2864468 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATTTTTTATTTATATTT+AGG | + | chr1.3:2866108-2866127 | MS.gene26956:intron | 0.0% |
| !!! | AAAAAATTATTTTTTGTTGT+GGG | + | chr1.3:2865223-2865242 | MS.gene26956:intron | 10.0% |
| !!! | ATAATTTTTAAAAATAAGTG+GGG | + | chr1.3:2865131-2865150 | MS.gene26956:intron | 10.0% |
| !!! | TAAAAAATTATTTTTTGTTG+TGG | + | chr1.3:2865222-2865241 | MS.gene26956:intron | 10.0% |
| !! | AATAAATTTCATCTTACAAA+AGG | - | chr1.3:2867136-2867155 | None:intergenic | 15.0% |
| !! | AATTATATTATTATCTGTGT+CGG | - | chr1.3:2865963-2865982 | None:intergenic | 15.0% |
| !! | ACTATCTATTAGATTAAATT+TGG | + | chr1.3:2866073-2866092 | MS.gene26956:intron | 15.0% |
| !! | ATTGTAACTATATACATATA+TGG | + | chr1.3:2866408-2866427 | MS.gene26956:intron | 15.0% |
| !!! | AAAAATTATTTTTTGTTGTG+GGG | + | chr1.3:2865224-2865243 | MS.gene26956:intron | 15.0% |
| !!! | ACATATCTTTTATTAACTAT+TGG | + | chr1.3:2865692-2865711 | MS.gene26956:intron | 15.0% |
| !!! | ATCATAATTTTCATATTCAT+GGG | + | chr1.3:2865362-2865381 | MS.gene26956:intron | 15.0% |
| !!! | ATTTTTAAAAATTATTAGGC+CGG | - | chr1.3:2865126-2865145 | None:intergenic | 15.0% |
| !!! | CATATCTTTTATTAACTATT+GGG | + | chr1.3:2865693-2865712 | MS.gene26956:intron | 15.0% |
| !!! | GTTTTTTTAATTAGAATATG+AGG | + | chr1.3:2865178-2865197 | MS.gene26956:intron | 15.0% |
| !!! | TATCATAATTTTCATATTCA+TGG | + | chr1.3:2865361-2865380 | MS.gene26956:intron | 15.0% |
| !!! | TATTAATGTTATCTATGTTT+TGG | + | chr1.3:2865577-2865596 | MS.gene26956:intron | 15.0% |
| !! | AACCAAACAAGTTATATAAT+AGG | - | chr1.3:2866860-2866879 | None:intergenic | 20.0% |
| !! | AATAAAAGATATGTGTATTG+TGG | - | chr1.3:2865686-2865705 | None:intergenic | 20.0% |
| !! | ACAAAAAATCAGTATTATCA+AGG | - | chr1.3:2865499-2865518 | None:intergenic | 20.0% |
| !! | ACAGATAGTATAAGATTAAA+TGG | + | chr1.3:2864621-2864640 | MS.gene26956:intron | 20.0% |
| !! | ATATAATTCAGTGTAATCAT+AGG | + | chr1.3:2865975-2865994 | MS.gene26956:intron | 20.0% |
| !! | CAAAAAATCAGTATTATCAA+GGG | - | chr1.3:2865498-2865517 | None:intergenic | 20.0% |
| !! | CAAATTTGTATCATAATAGA+AGG | - | chr1.3:2866193-2866212 | None:intergenic | 20.0% |
| !! | GCTTAACATAAAAGTTATTA+CGG | - | chr1.3:2866836-2866855 | None:intergenic | 20.0% |
| !! | TAAAACAAGCTTAAATACAT+GGG | + | chr1.3:2865156-2865175 | MS.gene26956:intron | 20.0% |
| !! | TGATTCCTAGATATAAAAAA+GGG | + | chr1.3:2867247-2867266 | MS.gene26956:intron | 20.0% |
| !! | TTAAAACAAGCTTAAATACA+TGG | + | chr1.3:2865155-2865174 | MS.gene26956:intron | 20.0% |
| !! | TTGATTCCTAGATATAAAAA+AGG | + | chr1.3:2867246-2867265 | MS.gene26956:intron | 20.0% |
| !! | TTTATGCATTAATCTATACA+TGG | + | chr1.3:2866667-2866686 | MS.gene26956:intron | 20.0% |
| !!! | AAATTTTACAGATGCTTAAA+AGG | - | chr1.3:2866732-2866751 | None:intergenic | 20.0% |
| !!! | ATGATAATGATAAGAGATAT+TGG | + | chr1.3:2864712-2864731 | MS.gene26956:intron | 20.0% |
| !!! | TATATAACTTGTTTGGTTTT+TGG | + | chr1.3:2866862-2866881 | MS.gene26956:intron | 20.0% |
| !!! | TATTTTGTCAAAAAACCTTA+TGG | - | chr1.3:2866309-2866328 | None:intergenic | 20.0% |
| !!! | TGACTAATTGACTATATTTT+CGG | + | chr1.3:2865448-2865467 | MS.gene26956:intron | 20.0% |
| !!! | TTTTGTTTATATTTGAGACA+GGG | - | chr1.3:2865881-2865900 | None:intergenic | 20.0% |
| !!! | TTTTTGTTTATATTTGAGAC+AGG | - | chr1.3:2865882-2865901 | None:intergenic | 20.0% |
| ! | AAAAGTTTAATTGTCGTCAT+TGG | + | chr1.3:2867387-2867406 | MS.gene26956:CDS | 25.0% |
| ! | AAAGATTGTGTACTAAACAA+GGG | - | chr1.3:2867304-2867323 | None:intergenic | 25.0% |
| ! | AATTTATCTACCATGTTACT+TGG | + | chr1.3:2866747-2866766 | MS.gene26956:intron | 25.0% |
| ! | AGTAATACGTTTATTTCCTT+AGG | - | chr1.3:2866238-2866257 | None:intergenic | 25.0% |
| ! | ATGAAATGTGAAACAGAAAT+GGG | + | chr1.3:2864738-2864757 | MS.gene26956:intron | 25.0% |
| ! | ATTTATAAAAATAGCCGATC+GGG | - | chr1.3:2866479-2866498 | None:intergenic | 25.0% |
| ! | ATTTCAGATGTTTCATATTC+TGG | - | chr1.3:2864924-2864943 | None:intergenic | 25.0% |
| ! | CATTTATAAAAATAGCCGAT+CGG | - | chr1.3:2866480-2866499 | None:intergenic | 25.0% |
| ! | GAAAACCTATAATCTTAACT+AGG | + | chr1.3:2864838-2864857 | MS.gene26956:intron | 25.0% |
| ! | GAGAAAAGATAGTTATAAGA+AGG | - | chr1.3:2866364-2866383 | None:intergenic | 25.0% |
| ! | TACATATATGGTTACTCAAT+AGG | + | chr1.3:2866420-2866439 | MS.gene26956:intron | 25.0% |
| ! | TATGAAATGTGAAACAGAAA+TGG | + | chr1.3:2864737-2864756 | MS.gene26956:intron | 25.0% |
| ! | TATTATCCACAAAAATTGCA+TGG | - | chr1.3:2865406-2865425 | None:intergenic | 25.0% |
| ! | TTAGTACCTTTAGATGATAT+TGG | + | chr1.3:2865610-2865629 | MS.gene26956:intron | 25.0% |
| ! | TTATATCTAGGAATCAAACT+CGG | - | chr1.3:2867243-2867262 | None:intergenic | 25.0% |
| !! | AAGATTCTTCAATTCTAAGA+AGG | + | chr1.3:2864556-2864575 | MS.gene26956:intron | 25.0% |
| !! | ACTTATAGGATAGGATTTTT+GGG | - | chr1.3:2865637-2865656 | None:intergenic | 25.0% |
| !! | AGATTCTTCAATTCTAAGAA+GGG | + | chr1.3:2864557-2864576 | MS.gene26956:intron | 25.0% |
| !! | ATAAATGTGAGCAATTTTGA+GGG | + | chr1.3:2866493-2866512 | MS.gene26956:intron | 25.0% |
| !! | ATCTATACATGGATTTTCTT+AGG | + | chr1.3:2866678-2866697 | MS.gene26956:intron | 25.0% |
| !! | ATTGACTATATTTTCGGATT+TGG | + | chr1.3:2865454-2865473 | MS.gene26956:intron | 25.0% |
| !! | ATTTCTTTAAAAGCCTTTGA+AGG | - | chr1.3:2867339-2867358 | None:intergenic | 25.0% |
| !! | TATAAATGTGAGCAATTTTG+AGG | + | chr1.3:2866492-2866511 | MS.gene26956:intron | 25.0% |
| !! | TTTCTTTAAAAGCCTTTGAA+GGG | - | chr1.3:2867338-2867357 | None:intergenic | 25.0% |
| !!! | ACAACTTTTAAGTGCATTTA+TGG | + | chr1.3:2864997-2865016 | MS.gene26956:intron | 25.0% |
| !!! | ATCTAAAGGTACTAAATTAG+AGG | - | chr1.3:2865605-2865624 | None:intergenic | 25.0% |
| !!! | ATGTTCTTGTTTTGTTTTGA+AGG | + | chr1.3:2867357-2867376 | MS.gene26956:intron | 25.0% |
| !!! | CACCTATTATATAACTTGTT+TGG | + | chr1.3:2866855-2866874 | MS.gene26956:intron | 25.0% |
| !!! | GTTTTTTATGTAAGAGTTAG+TGG | + | chr1.3:2864423-2864442 | MS.gene26956:CDS | 25.0% |
| !!! | TCTAAAGGTACTAAATTAGA+GGG | - | chr1.3:2865604-2865623 | None:intergenic | 25.0% |
| !!! | TGCTTAAAAGGTTTGTTAAA+TGG | - | chr1.3:2866720-2866739 | None:intergenic | 25.0% |
| AAAACTCTTACATCAAACCA+AGG | - | chr1.3:2864408-2864427 | None:intergenic | 30.0% | |
| AAGGGAAGGATATATAGATA+TGG | + | chr1.3:2866954-2866973 | MS.gene26956:CDS | 30.0% | |
| AAGGTCAGAATCTATTAACA+AGG | - | chr1.3:2865766-2865785 | None:intergenic | 30.0% | |
| AATCTATTAACAAGGGACAT+TGG | - | chr1.3:2865758-2865777 | None:intergenic | 30.0% | |
| AATGGTAATTTGATGCATGA+TGG | - | chr1.3:2864378-2864397 | None:intergenic | 30.0% | |
| AATGTTCCATTTGGTCTATA+AGG | + | chr1.3:2865334-2865353 | MS.gene26956:intron | 30.0% | |
| AATTACCATTTCCATTACCT+TGG | + | chr1.3:2864388-2864407 | MS.gene26956:CDS | 30.0% | |
| AATTTGCGAAATGTTCCATT+TGG | + | chr1.3:2865325-2865344 | MS.gene26956:intron | 30.0% | |
| ACTTGGAAATATGTTGTTGA+AGG | - | chr1.3:2866796-2866815 | None:intergenic | 30.0% | |
| AGCAACCATCAAATACATAT+TGG | + | chr1.3:2866524-2866543 | MS.gene26956:intron | 30.0% | |
| AGGTCAGAATCTATTAACAA+GGG | - | chr1.3:2865765-2865784 | None:intergenic | 30.0% | |
| AGTGTCCTAGTTAAGATTAT+AGG | - | chr1.3:2864846-2864865 | None:intergenic | 30.0% | |
| ATGAGTTTGATGAAATCACA+GGG | + | chr1.3:2865027-2865046 | MS.gene26956:intron | 30.0% | |
| ATGTTCCATTTGGTCTATAA+GGG | + | chr1.3:2865335-2865354 | MS.gene26956:intron | 30.0% | |
| ATTGCAGGAAGAAACATAAT+AGG | + | chr1.3:2864874-2864893 | MS.gene26956:CDS | 30.0% | |
| CAAATTAAGTCCAAGTAACA+TGG | - | chr1.3:2866760-2866779 | None:intergenic | 30.0% | |
| CTAAAAGCAGATACTATGTT+AGG | - | chr1.3:2866596-2866615 | None:intergenic | 30.0% | |
| GAAAGATTGTGTACTAAACA+AGG | - | chr1.3:2867305-2867324 | None:intergenic | 30.0% | |
| GAAATTGAAGTTTATGTTGC+TGG | + | chr1.3:2864804-2864823 | MS.gene26956:intron | 30.0% | |
| GACACAACATACAGAAAATA+AGG | - | chr1.3:2865823-2865842 | None:intergenic | 30.0% | |
| GCAACATAAACTTCAATTTC+AGG | - | chr1.3:2864804-2864823 | None:intergenic | 30.0% | |
| GGAAATAAACGTATTACTGA+AGG | + | chr1.3:2866240-2866259 | MS.gene26956:intron | 30.0% | |
| GGATATATAGATATGGAAGA+TGG | + | chr1.3:2866961-2866980 | MS.gene26956:CDS | 30.0% | |
| TATAGTTACAATTGCTGATG+TGG | - | chr1.3:2866400-2866419 | None:intergenic | 30.0% | |
| TATATCCCTTATAGACCAAA+TGG | - | chr1.3:2865343-2865362 | None:intergenic | 30.0% | |
| TATCTATATATCCTTCCCTT+TGG | - | chr1.3:2866954-2866973 | None:intergenic | 30.0% | |
| TATGAGTTTGATGAAATCAC+AGG | + | chr1.3:2865026-2865045 | MS.gene26956:intron | 30.0% | |
| TCAATTACTTATCTACCACT+AGG | + | chr1.3:2867173-2867192 | MS.gene26956:intron | 30.0% | |
| TGATGAAGATATAGAAACTG+TGG | - | chr1.3:2864471-2864490 | None:intergenic | 30.0% | |
| TGGACCTTAGACAAATAAAT+GGG | - | chr1.3:2866564-2866583 | None:intergenic | 30.0% | |
| TTGGACCTTAGACAAATAAA+TGG | - | chr1.3:2866565-2866584 | None:intergenic | 30.0% | |
| ! | AAGAGTGTATCAAGACTTAA+AGG | - | chr1.3:2864498-2864517 | None:intergenic | 30.0% |
| ! | AAGGAGTAGATTGAAAGTTT+TGG | - | chr1.3:2866174-2866193 | None:intergenic | 30.0% |
| ! | CACTTATAGGATAGGATTTT+TGG | - | chr1.3:2865638-2865657 | None:intergenic | 30.0% |
| ! | CCTTTGAAAAAACCACTATT+AGG | - | chr1.3:2864765-2864784 | None:intergenic | 30.0% |
| ! | CTTTTACCATGCAATTTTTG+TGG | + | chr1.3:2865397-2865416 | MS.gene26956:intron | 30.0% |
| ! | TAAATGTGAGCAATTTTGAG+GGG | + | chr1.3:2866494-2866513 | MS.gene26956:intron | 30.0% |
| !! | ACTATGTTAGGTATTGGATT+TGG | - | chr1.3:2866584-2866603 | None:intergenic | 30.0% |
| !!! | AGTTGCCCTTTTTTATATCT+AGG | - | chr1.3:2867255-2867274 | None:intergenic | 30.0% |
| !!! | CCTAATAGTGGTTTTTTCAA+AGG | + | chr1.3:2864762-2864781 | MS.gene26956:intron | 30.0% |
| !!! | TTGTTTGGTTTTTGGTTCAT+AGG | + | chr1.3:2866870-2866889 | MS.gene26956:intron | 30.0% |
| AACAGTCACACTTATAGGAT+AGG | - | chr1.3:2865646-2865665 | None:intergenic | 35.0% | |
| AAGTCTTGATACACTCTTAG+AGG | + | chr1.3:2864500-2864519 | MS.gene26956:CDS | 35.0% | |
| ACAACAACATGTATTGCCAA+AGG | + | chr1.3:2866935-2866954 | MS.gene26956:CDS | 35.0% | |
| ACAACACTTCTGTATGAATG+TGG | + | chr1.3:2867416-2867435 | MS.gene26956:CDS | 35.0% | |
| ACCAGTACTTGTCCTTTAAT+GGG | - | chr1.3:2865790-2865809 | None:intergenic | 35.0% | |
| AGTGCATGTTTGGATTAACA+GGG | - | chr1.3:2865305-2865324 | None:intergenic | 35.0% | |
| ATAACCAATATCTCCCCTAA+TGG | + | chr1.3:2866329-2866348 | MS.gene26956:intron | 35.0% | |
| ATGAAGCACAAACATAGACA+CGG | + | chr1.3:2865915-2865934 | MS.gene26956:intron | 35.0% | |
| CAACAACATGTATTGCCAAA+GGG | + | chr1.3:2866936-2866955 | MS.gene26956:CDS | 35.0% | |
| CAGATGAATGTACAACTAGA+AGG | + | chr1.3:2866133-2866152 | MS.gene26956:intron | 35.0% | |
| CTACTTATCTGTGGAAAACT+TGG | + | chr1.3:2867273-2867292 | MS.gene26956:intron | 35.0% | |
| CTCTTTCTGTCTAAACCATA+AGG | + | chr1.3:2866291-2866310 | MS.gene26956:intron | 35.0% | |
| CTTACATCAAACCAAGGTAA+TGG | - | chr1.3:2864402-2864421 | None:intergenic | 35.0% | |
| GATACACTCTTAGAGGTAAA+TGG | + | chr1.3:2864507-2864526 | MS.gene26956:intron | 35.0% | |
| GATGTTTGTGATCATGATCA+TGG | + | chr1.3:2864951-2864970 | MS.gene26956:CDS | 35.0% | |
| GCAGATACTATGTTAGGTAT+TGG | - | chr1.3:2866590-2866609 | None:intergenic | 35.0% | |
| GTTGTTGAAGGACTAATACT+AGG | - | chr1.3:2866784-2866803 | None:intergenic | 35.0% | |
| TAGTGCATGTTTGGATTAAC+AGG | - | chr1.3:2865306-2865325 | None:intergenic | 35.0% | |
| TATAAGTGTGACTGTTGCAT+GGG | + | chr1.3:2865650-2865669 | MS.gene26956:intron | 35.0% | |
| TATGATGCATCATCATGCAA+TGG | + | chr1.3:2864300-2864319 | MS.gene26956:CDS | 35.0% | |
| TGAAACTACGAGTAGTTCTT+TGG | - | chr1.3:2867089-2867108 | None:intergenic | 35.0% | |
| TTCGCAAATTAGTGCATGTT+TGG | - | chr1.3:2865315-2865334 | None:intergenic | 35.0% | |
| TTGAGTGTGATAGTAACCTA+AGG | + | chr1.3:2866219-2866238 | MS.gene26956:intron | 35.0% | |
| TTGGGACCAATATCATCTAA+AGG | - | chr1.3:2865619-2865638 | None:intergenic | 35.0% | |
| TTGTAATGCTCTTCTTCTTC+TGG | - | chr1.3:2866919-2866938 | None:intergenic | 35.0% | |
| ! | AGCTTTTGCCAAAATCATGA+CGG | + | chr1.3:2865075-2865094 | MS.gene26956:intron | 35.0% |
| ! | CTTCTAGTTGTACATTCATC+TGG | - | chr1.3:2866135-2866154 | None:intergenic | 35.0% |
| ! | GTATTTGATGGTTGCTCAAT+AGG | - | chr1.3:2866520-2866539 | None:intergenic | 35.0% |
| ! | TAATAGGAAAGTGTGCATGT+TGG | + | chr1.3:2864890-2864909 | MS.gene26956:CDS | 35.0% |
| ! | TGTAATCATAGGTATCGTGT+TGG | + | chr1.3:2865986-2866005 | MS.gene26956:intron | 35.0% |
| ! | TTCGGATTTGGAATAAGATG+TGG | + | chr1.3:2865466-2865485 | MS.gene26956:intron | 35.0% |
| !! | ATCTTTGTAGGAGTTGGTAT+AGG | + | chr1.3:2867039-2867058 | MS.gene26956:intron | 35.0% |
| !! | TCAAACCAAGGTAATGGAAA+TGG | - | chr1.3:2864396-2864415 | None:intergenic | 35.0% |
| !! | TCTTTGTAGGAGTTGGTATA+GGG | + | chr1.3:2867040-2867059 | MS.gene26956:intron | 35.0% |
| !! | TTGATGCATGATGGATCATA+AGG | - | chr1.3:2864369-2864388 | None:intergenic | 35.0% |
| AAAGGGCAACTACTTATCTG+TGG | + | chr1.3:2867264-2867283 | MS.gene26956:intron | 40.0% | |
| AAATAAATGGGCCGGATAGA+GGG | - | chr1.3:2866552-2866571 | None:intergenic | 40.0% | |
| AACATGTATTGCCAAAGGGA+AGG | + | chr1.3:2866940-2866959 | MS.gene26956:CDS | 40.0% | |
| AAGGAGACACTTACCATTAG+GGG | - | chr1.3:2866345-2866364 | None:intergenic | 40.0% | |
| ACAGAAATGGGACCTAATAG+TGG | + | chr1.3:2864750-2864769 | MS.gene26956:intron | 40.0% | |
| ACTACGAGTAGTTCTTTGGT+AGG | - | chr1.3:2867085-2867104 | None:intergenic | 40.0% | |
| AGAAGGAGACACTTACCATT+AGG | - | chr1.3:2866347-2866366 | None:intergenic | 40.0% | |
| ATTCTGACCTTCCCCATTAA+AGG | + | chr1.3:2865775-2865794 | MS.gene26956:intron | 40.0% | |
| ATTGGACTTGGCATCTTTGT+AGG | + | chr1.3:2867027-2867046 | MS.gene26956:intron | 40.0% | |
| CACCAGTACTTGTCCTTTAA+TGG | - | chr1.3:2865791-2865810 | None:intergenic | 40.0% | |
| CATGCAACAGTCACACTTAT+AGG | - | chr1.3:2865651-2865670 | None:intergenic | 40.0% | |
| CCAGTACTTGTCCTTTAATG+GGG | - | chr1.3:2865789-2865808 | None:intergenic | 40.0% | |
| CCTTAGACAAATAAATGGGC+CGG | - | chr1.3:2866560-2866579 | None:intergenic | 40.0% | |
| CTATAAGTGTGACTGTTGCA+TGG | + | chr1.3:2865649-2865668 | MS.gene26956:intron | 40.0% | |
| CTGATCAGGAGCAAAATTGA+GGG | - | chr1.3:2866447-2866466 | None:intergenic | 40.0% | |
| CTTACCATTAGGGGAGATAT+TGG | - | chr1.3:2866336-2866355 | None:intergenic | 40.0% | |
| GAACTACTCGTAGTTTCAAG+AGG | + | chr1.3:2867091-2867110 | MS.gene26956:intron | 40.0% | |
| GAAGGAGACACTTACCATTA+GGG | - | chr1.3:2866346-2866365 | None:intergenic | 40.0% | |
| GGGCACCAATATGTATTTGA+TGG | - | chr1.3:2866532-2866551 | None:intergenic | 40.0% | |
| TACTTGTCCTTTAATGGGGA+AGG | - | chr1.3:2865785-2865804 | None:intergenic | 40.0% | |
| TGATCAGGAGCAAAATTGAG+GGG | - | chr1.3:2866446-2866465 | None:intergenic | 40.0% | |
| TTCAATGCTGGAGTAAGAGT+TGG | + | chr1.3:2866997-2867016 | MS.gene26956:intron | 40.0% | |
| TTGTGACACTCATAAGCACT+TGG | - | chr1.3:2866813-2866832 | None:intergenic | 40.0% | |
| ! | TCATTTTCTGTGCCCTTCAA+AGG | + | chr1.3:2867323-2867342 | MS.gene26956:intron | 40.0% |
| ! | TGATCATGGACTTGTTTCAC+AGG | + | chr1.3:2864965-2864984 | MS.gene26956:CDS | 40.0% |
| !! | AAAGGACAAGTACTGGTGTT+GGG | + | chr1.3:2865793-2865812 | MS.gene26956:intron | 40.0% |
| !! | CTTTGTAGGAGTTGGTATAG+GGG | + | chr1.3:2867041-2867060 | MS.gene26956:intron | 40.0% |
| !! | GTAAGAGTTGGTGTTGGAAT+TGG | + | chr1.3:2867009-2867028 | MS.gene26956:intron | 40.0% |
| !! | TAAAGGACAAGTACTGGTGT+TGG | + | chr1.3:2865792-2865811 | MS.gene26956:intron | 40.0% |
| !! | TATGAAGCACTGATACTCCT+CGG | - | chr1.3:2866054-2866073 | None:intergenic | 40.0% |
| ACATAGACACGGACACAACA+CGG | + | chr1.3:2865926-2865945 | MS.gene26956:intron | 45.0% | |
| CAAATAAATGGGCCGGATAG+AGG | - | chr1.3:2866553-2866572 | None:intergenic | 45.0% | |
| CACTGTGATTACGTCAGACA+AGG | + | chr1.3:2865100-2865119 | MS.gene26956:intron | 45.0% | |
| CCCCATTAAAGGACAAGTAC+TGG | + | chr1.3:2865786-2865805 | MS.gene26956:intron | 45.0% | |
| CCGGCCCATTTATTTGTCTA+AGG | + | chr1.3:2866557-2866576 | MS.gene26956:intron | 45.0% | |
| CCTGATCAGGAGCAAAATTG+AGG | - | chr1.3:2866448-2866467 | None:intergenic | 45.0% | |
| CTACTCGTAGTTTCAAGAGG+AGG | + | chr1.3:2867094-2867113 | MS.gene26956:intron | 45.0% | |
| CTTGGCATCTTTGTAGGAGT+TGG | + | chr1.3:2867033-2867052 | MS.gene26956:intron | 45.0% | |
| GAGCTATCATGGTTCAATGC+TGG | + | chr1.3:2866985-2867004 | MS.gene26956:intron | 45.0% | |
| GATGCATCATCATGCAATGG+AGG | + | chr1.3:2864303-2864322 | MS.gene26956:CDS | 45.0% | |
| GATTAGGCGTGTCCTAGTAT+CGG | - | chr1.3:2866032-2866051 | None:intergenic | 45.0% | |
| GCATGTTTGGATTAACAGGG+AGG | - | chr1.3:2865302-2865321 | None:intergenic | 45.0% | |
| TGGAAGATGGTGAGCTATCA+TGG | + | chr1.3:2866974-2866993 | MS.gene26956:intron | 45.0% | |
| ! | ACAGTGTGCCGTCATGATTT+TGG | - | chr1.3:2865086-2865105 | None:intergenic | 45.0% |
| ! | ACATATTGGTGCCCTCTATC+CGG | + | chr1.3:2866538-2866557 | MS.gene26956:intron | 45.0% |
| ! | ATCAGGTTGTAACTCCCGAT+CGG | + | chr1.3:2866462-2866481 | MS.gene26956:intron | 45.0% |
| ! | CCTCAATTTTGCTCCTGATC+AGG | + | chr1.3:2866445-2866464 | MS.gene26956:intron | 45.0% |
| !! | AAGGACAAGTACTGGTGTTG+GGG | + | chr1.3:2865794-2865813 | MS.gene26956:intron | 45.0% |
| !! | GTTGGTGTTGGAATTGGACT+TGG | + | chr1.3:2867015-2867034 | MS.gene26956:intron | 45.0% |
| !!! | AATAATTTTTAAAAATAAGT+GGG | + | chr1.3:2865130-2865149 | MS.gene26956:intron | 5.0% |
| !!! | ACTTATTTTTAAAAATTATT+AGG | - | chr1.3:2865130-2865149 | None:intergenic | 5.0% |
| !!! | TAATAATTTTTAAAAATAAG+TGG | + | chr1.3:2865129-2865148 | MS.gene26956:intron | 5.0% |
| ACTAGGTAGTGCGTACGGTA+TGG | + | chr1.3:2867190-2867209 | MS.gene26956:intron | 50.0% | |
| ATACCGTACGCACTACCTAG+TGG | - | chr1.3:2867191-2867210 | None:intergenic | 50.0% | |
| CTACCACTAGGTAGTGCGTA+CGG | + | chr1.3:2867185-2867204 | MS.gene26956:intron | 50.0% | |
| GGACACTGCAGATCAATTGC+AGG | + | chr1.3:2864859-2864878 | MS.gene26956:intron | 50.0% | |
| GTGATTACGTCAGACAAGGC+CGG | + | chr1.3:2865104-2865123 | MS.gene26956:intron | 50.0% | |
| TCGGGAGTTACAACCTGATC+AGG | - | chr1.3:2866461-2866480 | None:intergenic | 50.0% | |
| TTTGGTAGGAACGTGCCAAG+AGG | - | chr1.3:2867071-2867090 | None:intergenic | 50.0% | |
| ! | GCACTGATACTCCTCGGATT+AGG | - | chr1.3:2866048-2866067 | None:intergenic | 50.0% |
| !! | GCTGGAGTAAGAGTTGGTGT+TGG | + | chr1.3:2867003-2867022 | MS.gene26956:intron | 50.0% |
| AACAGGGAGGTCTGACGTCA+GGG | - | chr1.3:2865289-2865308 | None:intergenic | 55.0% | |
| ACTAGGACACGCCTAATCCG+AGG | + | chr1.3:2866034-2866053 | MS.gene26956:intron | 55.0% | |
| AGTGTGACTGTTGCATGGGC+AGG | + | chr1.3:2865654-2865673 | MS.gene26956:intron | 55.0% | |
| TAACAGGGAGGTCTGACGTC+AGG | - | chr1.3:2865290-2865309 | None:intergenic | 55.0% | |
| TGGTATAGGGGTCAGCCTCT+TGG | + | chr1.3:2867053-2867072 | MS.gene26956:intron | 55.0% | |
| ! | TCCTAGTATCGGACACGCGT+CGG | - | chr1.3:2866021-2866040 | None:intergenic | 55.0% |
| !! | GACAAGTACTGGTGTTGGGG+AGG | + | chr1.3:2865797-2865816 | MS.gene26956:intron | 55.0% |
| !! | GTTTTGGCGGCCTTACCCTT+AGG | + | chr1.3:2865259-2865278 | MS.gene26956:intron | 55.0% |
| ACCGACGCGTGTCCGATACT+AGG | + | chr1.3:2866017-2866036 | MS.gene26956:intron | 60.0% | |
| TCAGGGTCGGCCTAAGGGTA+AGG | - | chr1.3:2865272-2865291 | None:intergenic | 60.0% | |
| TGACGTCAGGGTCGGCCTAA+GGG | - | chr1.3:2865277-2865296 | None:intergenic | 60.0% | |
| TGTTGTGGGGCCTAACGCGA+GGG | + | chr1.3:2865237-2865256 | MS.gene26956:intron | 60.0% | |
| TTGTTGTGGGGCCTAACGCG+AGG | + | chr1.3:2865236-2865255 | MS.gene26956:intron | 60.0% | |
| !! | GCCTAACGCGAGGGTTTTGG+CGG | + | chr1.3:2865246-2865265 | MS.gene26956:intron | 60.0% |
| CTGACGTCAGGGTCGGCCTA+AGG | - | chr1.3:2865278-2865297 | None:intergenic | 65.0% | |
| GCCGCCAAAACCCTCGCGTT+AGG | - | chr1.3:2865250-2865269 | None:intergenic | 65.0% | |
| GGGAGGTCTGACGTCAGGGT+CGG | - | chr1.3:2865285-2865304 | None:intergenic | 65.0% | |
| ! | GGGGCCTAACGCGAGGGTTT+TGG | + | chr1.3:2865243-2865262 | MS.gene26956:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 2864288 | 2867446 | 2864288 | ID=MS.gene26956 |
| chr1.3 | mRNA | 2864288 | 2867446 | 2864288 | ID=MS.gene26956.t1;Parent=MS.gene26956 |
| chr1.3 | exon | 2864288 | 2864521 | 2864288 | ID=MS.gene26956.t1.exon1;Parent=MS.gene26956.t1 |
| chr1.3 | CDS | 2864288 | 2864521 | 2864288 | ID=cds.MS.gene26956.t1;Parent=MS.gene26956.t1 |
| chr1.3 | exon | 2864870 | 2864986 | 2864870 | ID=MS.gene26956.t1.exon2;Parent=MS.gene26956.t1 |
| chr1.3 | CDS | 2864870 | 2864986 | 2864870 | ID=cds.MS.gene26956.t1;Parent=MS.gene26956.t1 |
| chr1.3 | exon | 2866892 | 2866982 | 2866892 | ID=MS.gene26956.t1.exon3;Parent=MS.gene26956.t1 |
| chr1.3 | CDS | 2866892 | 2866982 | 2866892 | ID=cds.MS.gene26956.t1;Parent=MS.gene26956.t1 |
| chr1.3 | exon | 2867379 | 2867446 | 2867379 | ID=MS.gene26956.t1.exon4;Parent=MS.gene26956.t1 |
| chr1.3 | CDS | 2867379 | 2867446 | 2867379 | ID=cds.MS.gene26956.t1;Parent=MS.gene26956.t1 |
| Gene Sequence |
| Protein sequence |
