AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene27035

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27035.t1 MTR_1g023660 98.529 340 4 1 1 339 1 340 0.0 699
MS.gene27035.t1 MTR_8g099780 49.713 348 127 10 2 339 3 312 8.30e-104 307
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27035.t1 AT5G42520 65.084 358 90 15 1 339 1 342 1.12e-149 425
MS.gene27035.t1 AT5G42520 63.966 358 90 15 1 339 1 338 1.89e-145 414
MS.gene27035.t1 AT5G42520 62.543 291 84 11 65 339 1 282 2.13e-116 338
MS.gene27035.t1 AT2G21240 48.830 342 115 7 5 339 8 296 6.31e-100 297
MS.gene27035.t1 AT2G21240 48.830 342 115 7 5 339 8 296 6.31e-100 297
MS.gene27035.t1 AT4G38910 45.266 338 120 7 5 339 8 283 8.17e-93 278
MS.gene27035.t1 AT4G38910 45.253 316 111 6 24 339 5 258 1.31e-86 261
MS.gene27035.t1 AT2G35550 55.932 118 52 0 222 339 109 226 1.43e-45 155
MS.gene27035.t1 AT2G35550 55.932 118 52 0 222 339 109 226 1.43e-45 155
MS.gene27035.t1 AT2G35550 55.932 118 52 0 222 339 109 226 1.43e-45 155
MS.gene27035.t1 AT2G35550 55.932 118 52 0 222 339 154 271 1.86e-45 156
MS.gene27035.t1 AT1G68120 56.075 107 47 0 233 339 163 269 1.32e-43 151
MS.gene27035.t1 AT2G01930 55.455 110 49 0 230 339 174 283 2.07e-43 151
MS.gene27035.t1 AT2G01930 55.455 110 49 0 230 339 174 283 2.07e-43 151
MS.gene27035.t1 AT1G14685 54.545 110 50 0 230 339 170 279 2.28e-42 148
MS.gene27035.t1 AT1G14685 54.545 110 50 0 230 339 170 279 2.28e-42 148
MS.gene27035.t1 AT1G14685 54.545 110 50 0 230 339 170 279 2.28e-42 148
MS.gene27035.t1 AT1G14685 54.545 110 50 0 230 339 170 279 2.28e-42 148

Find 89 sgRNAs with CRISPR-Local

Find 110 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTGGCCCAATGGTCTTTA+AGG 0.149233 1.1:+1186241 None:intergenic
GGTAAACCATTTGCCTAATA+TGG 0.151975 1.1:-1186832 MS.gene27035:CDS
CCATTCAAGCTCTTTGTTGT+TGG 0.281988 1.1:+1186614 None:intergenic
TTGCTGTACAACCACTTTAT+CGG 0.289810 1.1:-1186394 MS.gene27035:CDS
TCTGGCCCTCTCTGAGAAAA+AGG 0.293315 1.1:-1187057 MS.gene27035:CDS
AGTAGTGAGGAAATGATAAA+TGG 0.302982 1.1:-1186588 MS.gene27035:CDS
GATTGACATAATTTGCTTCA+TGG 0.306231 1.1:+1187115 None:intergenic
CTGATGGACGATCGTGAAAA+TGG 0.307285 1.1:-1187337 MS.gene27035:CDS
TAAGAAGAATCACCCATATT+AGG 0.336214 1.1:+1186819 None:intergenic
CTTACTTTCCTTTGGCCGTT+TGG 0.363106 1.1:+1186716 None:intergenic
CAATGGTCTTTAAGGTCAAC+CGG 0.380775 1.1:+1186249 None:intergenic
TTTCCCAACCTCTGAAGAAA+TGG 0.384675 1.1:+1186752 None:intergenic
GAATCAGACTTACTTTCCTT+TGG 0.396516 1.1:+1186708 None:intergenic
CCAACAACAAAGAGCTTGAA+TGG 0.401945 1.1:-1186614 MS.gene27035:CDS
GGCCAGATTTCTTTCTTGAA+TGG 0.411936 1.1:+1187073 None:intergenic
GGAACGGAATAATGCACTTA+TGG 0.418242 1.1:-1186982 MS.gene27035:CDS
CGAGAAAATGCTTTGGCCAA+TGG 0.428561 1.1:-1186927 MS.gene27035:CDS
GTATCGATTTGTACCATGTT+TGG 0.434696 1.1:+1186224 None:intergenic
TTCCCAACCTCTGAAGAAAT+GGG 0.437141 1.1:+1186753 None:intergenic
AGGTTTCCAATCAGCCTTTG+AGG 0.441798 1.1:+1186536 None:intergenic
TATACATCACCTTCCGCAAC+AGG 0.447735 1.1:-1186853 MS.gene27035:CDS
AATCACCCATATTAGGCAAA+TGG 0.448313 1.1:+1186826 None:intergenic
TTGTACCATGTTTGGCCCAA+TGG 0.454297 1.1:+1186232 None:intergenic
TAGCAGCCTCAAAGGCTGAT+TGG 0.454649 1.1:-1186542 MS.gene27035:CDS
AATATGGGTGATTCTTCTTA+CGG 0.455899 1.1:-1186816 MS.gene27035:CDS
AGATCAATATAAATCTGCTC+AGG 0.457509 1.1:-1187302 MS.gene27035:CDS
TTCTGAGACAGTGCTACAAA+TGG 0.466001 1.1:-1186440 MS.gene27035:CDS
GTACAAGAGCATGCTGGTGC+TGG 0.473862 1.1:+1186468 None:intergenic
GCACCAGCATGCTCTTGTAC+TGG 0.474798 1.1:-1186465 MS.gene27035:CDS
CGGTTGACCTTAAAGACCAT+TGG 0.478594 1.1:-1186248 MS.gene27035:CDS
TCTGAGACAGTGCTACAAAT+GGG 0.478630 1.1:-1186439 MS.gene27035:CDS
GTAAACCATTTGCCTAATAT+GGG 0.479892 1.1:-1186831 MS.gene27035:CDS
CAGTGCTACAAATGGGGTAA+TGG 0.484703 1.1:-1186432 MS.gene27035:CDS
TCAGTTTCGAGAAAATGCTT+TGG 0.485734 1.1:-1186934 MS.gene27035:CDS
AGCCATTCAAGAAAGAAATC+TGG 0.489436 1.1:-1187075 MS.gene27035:CDS
CCCCGTGAGATTTGACATCC+TGG 0.492305 1.1:+1186885 None:intergenic
TGATTGGAAACCTCAGGACT+TGG 0.494236 1.1:-1186526 MS.gene27035:CDS
GGCAAATGGTTTACCTGTTG+CGG 0.495581 1.1:+1186840 None:intergenic
TTCCAGCTGTGCCCAACAAA+AGG 0.495805 1.1:-1186362 MS.gene27035:CDS
GAAGCAAATTATGTCAATCA+TGG 0.497300 1.1:-1187111 MS.gene27035:CDS
CTTAGCCGGCTTGCAGCTGA+AGG 0.500276 1.1:-1186288 MS.gene27035:CDS
TTGAATCATCGTATGCAACT+TGG 0.503216 1.1:+1186496 None:intergenic
GACATAATTTGCTTCATGGA+AGG 0.504898 1.1:+1187119 None:intergenic
ATATAAATCTGCTCAGGGAC+AGG 0.509112 1.1:-1187296 MS.gene27035:intron
CTTTCAATAAACTACTTAGC+CGG 0.514461 1.1:-1186302 MS.gene27035:CDS
TTTGGCCGTTTGGCACGCCT+AGG 0.515774 1.1:+1186726 None:intergenic
TTGTTGGGCACAGCTGGAAG+TGG 0.517836 1.1:+1186366 None:intergenic
GGTATGTCATCATGCCCTCC+AGG 0.518820 1.1:-1186903 MS.gene27035:CDS
GGTTGACCTTAAAGACCATT+GGG 0.521688 1.1:-1186247 MS.gene27035:CDS
CAAGCAGTTAGCAGCCTCAA+AGG 0.533010 1.1:-1186550 MS.gene27035:CDS
AAAGGCTGATTGGAAACCTC+AGG 0.538629 1.1:-1186532 MS.gene27035:CDS
AACCACCTAGGCGTGCCAAA+CGG 0.540428 1.1:-1186731 MS.gene27035:CDS
CAATTGCAGTATCTCGCTGC+AGG 0.542654 1.1:+1187006 None:intergenic
ACAAATGGGGTAATGGAGGT+TGG 0.545815 1.1:-1186425 MS.gene27035:CDS
ATCTAGAAAAGTCAAGAAAG+AGG 0.546447 1.1:-1186664 MS.gene27035:CDS
GGCCGTTTGGCACGCCTAGG+TGG 0.547084 1.1:+1186729 None:intergenic
TCCAGGATGTCAAATCTCAC+GGG 0.552910 1.1:-1186886 MS.gene27035:CDS
CTCCAGGATGTCAAATCTCA+CGG 0.563255 1.1:-1186887 MS.gene27035:CDS
GCATGATGACATACCACCAT+TGG 0.567052 1.1:+1186911 None:intergenic
TTTGCTTCATGGAAGGATGC+TGG 0.583298 1.1:+1187126 None:intergenic
TGGTTCAATGCCAAGTCCTG+AGG 0.592965 1.1:+1186516 None:intergenic
AGAGCATGCTGGTGCTGGCA+TGG 0.596415 1.1:+1186473 None:intergenic
CCCAACCTCTGAAGAAATGG+GGG 0.597363 1.1:+1186755 None:intergenic
GCTTGAATGGAAGAGTAGTG+AGG 0.599481 1.1:-1186601 MS.gene27035:CDS
AAAAGGCATGCTCGAGTAGG+TGG 0.599819 1.1:-1186345 MS.gene27035:CDS
TAGGCGTGCCAAACGGCCAA+AGG 0.600212 1.1:-1186724 MS.gene27035:CDS
CATGCCCTTCAGCTGCAAGC+CGG 0.601437 1.1:+1186283 None:intergenic
AAAGACCATTGGGCCAAACA+TGG 0.604624 1.1:-1186237 MS.gene27035:CDS
AAGTGGATATACCGATAAAG+TGG 0.604637 1.1:+1186383 None:intergenic
TCTAGAAAAGTCAAGAAAGA+GGG 0.605111 1.1:-1186663 MS.gene27035:CDS
AATGGTTTACCTGTTGCGGA+AGG 0.606017 1.1:+1186844 None:intergenic
GAGATACTGCAATTGCGGAA+CGG 0.606489 1.1:-1186998 MS.gene27035:CDS
TGCTACAAATGGGGTAATGG+AGG 0.606890 1.1:-1186429 MS.gene27035:CDS
TCCCAACCTCTGAAGAAATG+GGG 0.610433 1.1:+1186754 None:intergenic
GATCAATATAAATCTGCTCA+GGG 0.611740 1.1:-1187301 MS.gene27035:CDS
GCAGCGAGATACTGCAATTG+CGG 0.613903 1.1:-1187003 MS.gene27035:CDS
GAAAATGCTTTGGCCAATGG+TGG 0.615877 1.1:-1186924 MS.gene27035:CDS
CAGAGGTTGGGAAACCACCT+AGG 0.616912 1.1:-1186743 MS.gene27035:CDS
AGCACTTGCAGAACGTGACA+TGG 0.620297 1.1:-1187033 MS.gene27035:CDS
TGGACGATCGTGAAAATGGA+AGG 0.626784 1.1:-1187333 MS.gene27035:CDS
TTAGCCGGCTTGCAGCTGAA+GGG 0.630246 1.1:-1186287 MS.gene27035:CDS
CTGAGACAGTGCTACAAATG+GGG 0.642920 1.1:-1186438 MS.gene27035:CDS
AGGGCATGATCTCTCACACC+CGG 0.643910 1.1:-1186268 MS.gene27035:CDS
ACACCAGTACAAGAGCATGC+TGG 0.644328 1.1:+1186462 None:intergenic
GTGAGATTTGACATCCTGGA+GGG 0.655568 1.1:+1186889 None:intergenic
AACAAAAGGCATGCTCGAGT+AGG 0.658830 1.1:-1186348 MS.gene27035:CDS
CCAGGATGTCAAATCTCACG+GGG 0.670697 1.1:-1186885 MS.gene27035:CDS
AATGGTCTTTAAGGTCAACC+GGG 0.672212 1.1:+1186250 None:intergenic
CGTGAGATTTGACATCCTGG+AGG 0.739694 1.1:+1186888 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCTTGACTTTTCTAGATTT+TGG + chr1.1:1186877-1186896 None:intergenic 25.0%
!!! TTAAATTTATTTCTGAGCAG+AGG + chr1.1:1186286-1186305 None:intergenic 25.0%
AATATGGGTGATTCTTCTTA+CGG - chr1.1:1186727-1186746 MS.gene27035:CDS 30.0%
AGATCAATATAAATCTGCTC+AGG - chr1.1:1186241-1186260 MS.gene27035:CDS 30.0%
AGTAGTGAGGAAATGATAAA+TGG - chr1.1:1186955-1186974 MS.gene27035:CDS 30.0%
ATCTAGAAAAGTCAAGAAAG+AGG - chr1.1:1186879-1186898 MS.gene27035:CDS 30.0%
CTTTCAATAAACTACTTAGC+CGG - chr1.1:1187241-1187260 MS.gene27035:intron 30.0%
GAAGCAAATTATGTCAATCA+TGG - chr1.1:1186432-1186451 MS.gene27035:CDS 30.0%
GATCAATATAAATCTGCTCA+GGG - chr1.1:1186242-1186261 MS.gene27035:CDS 30.0%
GTAAACCATTTGCCTAATAT+GGG - chr1.1:1186712-1186731 MS.gene27035:CDS 30.0%
TAAGAAGAATCACCCATATT+AGG + chr1.1:1186727-1186746 None:intergenic 30.0%
TCTAGAAAAGTCAAGAAAGA+GGG - chr1.1:1186880-1186899 MS.gene27035:CDS 30.0%
!! GATTGACATAATTTGCTTCA+TGG + chr1.1:1186431-1186450 None:intergenic 30.0%
!! TCTAAAAATTGCTTTTGCAG+TGG - chr1.1:1186377-1186396 MS.gene27035:CDS 30.0%
AAGTGGATATACCGATAAAG+TGG + chr1.1:1187163-1187182 None:intergenic 35.0%
AATCACCCATATTAGGCAAA+TGG + chr1.1:1186720-1186739 None:intergenic 35.0%
AGCCATTCAAGAAAGAAATC+TGG - chr1.1:1186468-1186487 MS.gene27035:CDS 35.0%
AGTGCTGCATATACCTAAAA+GGG - chr1.1:1186333-1186352 MS.gene27035:CDS 35.0%
GAATCAGACTTACTTTCCTT+TGG + chr1.1:1186838-1186857 None:intergenic 35.0%
GGTAAACCATTTGCCTAATA+TGG - chr1.1:1186711-1186730 MS.gene27035:CDS 35.0%
TCAGTTTCGAGAAAATGCTT+TGG - chr1.1:1186609-1186628 MS.gene27035:CDS 35.0%
TTGAATCATCGTATGCAACT+TGG + chr1.1:1187050-1187069 None:intergenic 35.0%
TTGCTGTACAACCACTTTAT+CGG - chr1.1:1187149-1187168 MS.gene27035:CDS 35.0%
! AAGCATTTTCTCGAAACTGA+AGG + chr1.1:1186609-1186628 None:intergenic 35.0%
! AAGTGCTGCATATACCTAAA+AGG - chr1.1:1186332-1186351 MS.gene27035:CDS 35.0%
! AGCATTTTCTCGAAACTGAA+GGG + chr1.1:1186608-1186627 None:intergenic 35.0%
!! GACATAATTTGCTTCATGGA+AGG + chr1.1:1186427-1186446 None:intergenic 35.0%
!! GTATCGATTTGTACCATGTT+TGG + chr1.1:1187322-1187341 None:intergenic 35.0%
!!! GATTTTGGAGTCTTCTTGTT+AGG + chr1.1:1186862-1186881 None:intergenic 35.0%
ATATAAATCTGCTCAGGGAC+AGG - chr1.1:1186247-1186266 MS.gene27035:CDS 40.0%
CCAACAACAAAGAGCTTGAA+TGG - chr1.1:1186929-1186948 MS.gene27035:CDS 40.0%
GGAACGGAATAATGCACTTA+TGG - chr1.1:1186561-1186580 MS.gene27035:CDS 40.0%
GGCCAGATTTCTTTCTTGAA+TGG + chr1.1:1186473-1186492 None:intergenic 40.0%
GGTTGACCTTAAAGACCATT+GGG - chr1.1:1187296-1187315 MS.gene27035:intron 40.0%
GTAGGTGGTAGAAAAATGAG+TGG - chr1.1:1187213-1187232 MS.gene27035:intron 40.0%
! CCATTCAAGCTCTTTGTTGT+TGG + chr1.1:1186932-1186951 None:intergenic 40.0%
! TCTGAGACAGTGCTACAAAT+GGG - chr1.1:1187104-1187123 MS.gene27035:CDS 40.0%
! TTCCCAACCTCTGAAGAAAT+GGG + chr1.1:1186793-1186812 None:intergenic 40.0%
! TTTCCCAACCTCTGAAGAAA+TGG + chr1.1:1186794-1186813 None:intergenic 40.0%
!! AATGGTCTTTAAGGTCAACC+GGG + chr1.1:1187296-1187315 None:intergenic 40.0%
!! CAATGGTCTTTAAGGTCAAC+CGG + chr1.1:1187297-1187316 None:intergenic 40.0%
!! TTCTGAGACAGTGCTACAAA+TGG - chr1.1:1187103-1187122 MS.gene27035:CDS 40.0%
!!! AGTAGAGAAAGCACCCTTTT+AGG + chr1.1:1186349-1186368 None:intergenic 40.0%
AAAGACCATTGGGCCAAACA+TGG - chr1.1:1187306-1187325 MS.gene27035:CDS 45.0%
AAAGGCTGATTGGAAACCTC+AGG - chr1.1:1187011-1187030 MS.gene27035:CDS 45.0%
AATGGTTTACCTGTTGCGGA+AGG + chr1.1:1186702-1186721 None:intergenic 45.0%
AGGTTTCCAATCAGCCTTTG+AGG + chr1.1:1187010-1187029 None:intergenic 45.0%
CAGTGCTACAAATGGGGTAA+TGG - chr1.1:1187111-1187130 MS.gene27035:CDS 45.0%
CGAGAAAATGCTTTGGCCAA+TGG - chr1.1:1186616-1186635 MS.gene27035:CDS 45.0%
CGGTTGACCTTAAAGACCAT+TGG - chr1.1:1187295-1187314 MS.gene27035:intron 45.0%
CTCCAGGATGTCAAATCTCA+CGG - chr1.1:1186656-1186675 MS.gene27035:CDS 45.0%
CTGAGACAGTGCTACAAATG+GGG - chr1.1:1187105-1187124 MS.gene27035:CDS 45.0%
CTTACTTTCCTTTGGCCGTT+TGG + chr1.1:1186830-1186849 None:intergenic 45.0%
GAAAATGCTTTGGCCAATGG+TGG - chr1.1:1186619-1186638 MS.gene27035:CDS 45.0%
GAGATACTGCAATTGCGGAA+CGG - chr1.1:1186545-1186564 MS.gene27035:CDS 45.0%
GCATGATGACATACCACCAT+TGG + chr1.1:1186635-1186654 None:intergenic 45.0%
GCTTGAATGGAAGAGTAGTG+AGG - chr1.1:1186942-1186961 MS.gene27035:CDS 45.0%
GGCAAATGGTTTACCTGTTG+CGG + chr1.1:1186706-1186725 None:intergenic 45.0%
GTGAGATTTGACATCCTGGA+GGG + chr1.1:1186657-1186676 None:intergenic 45.0%
GTTTGGCCCAATGGTCTTTA+AGG + chr1.1:1187305-1187324 None:intergenic 45.0%
TATACATCACCTTCCGCAAC+AGG - chr1.1:1186690-1186709 MS.gene27035:CDS 45.0%
TCCAGGATGTCAAATCTCAC+GGG - chr1.1:1186657-1186676 MS.gene27035:CDS 45.0%
TGATTGGAAACCTCAGGACT+TGG - chr1.1:1187017-1187036 MS.gene27035:CDS 45.0%
TGGACGATCGTGAAAATGGA+AGG - chr1.1:1186210-1186229 MS.gene27035:CDS 45.0%
TTGTACCATGTTTGGCCCAA+TGG + chr1.1:1187314-1187333 None:intergenic 45.0%
TTTGCTTCATGGAAGGATGC+TGG + chr1.1:1186420-1186439 None:intergenic 45.0%
! AACAAAAGGCATGCTCGAGT+AGG - chr1.1:1187195-1187214 MS.gene27035:intron 45.0%
! ACTCGAGCATGCCTTTTGTT+GGG + chr1.1:1187195-1187214 None:intergenic 45.0%
! TACTCGAGCATGCCTTTTGT+TGG + chr1.1:1187196-1187215 None:intergenic 45.0%
! TCCCAACCTCTGAAGAAATG+GGG + chr1.1:1186792-1186811 None:intergenic 45.0%
! TGCTACAAATGGGGTAATGG+AGG - chr1.1:1187114-1187133 MS.gene27035:CDS 45.0%
! TGCTGCCTTTTTCTCAGAGA+GGG + chr1.1:1186494-1186513 None:intergenic 45.0%
!! ACAAATGGGGTAATGGAGGT+TGG - chr1.1:1187118-1187137 MS.gene27035:CDS 45.0%
AGCACTTGCAGAACGTGACA+TGG - chr1.1:1186510-1186529 MS.gene27035:CDS 50.0%
CAAGCAGTTAGCAGCCTCAA+AGG - chr1.1:1186993-1187012 MS.gene27035:CDS 50.0%
CAATTGCAGTATCTCGCTGC+AGG + chr1.1:1186540-1186559 None:intergenic 50.0%
CCAGGATGTCAAATCTCACG+GGG - chr1.1:1186658-1186677 MS.gene27035:CDS 50.0%
CCCCCATTTCTTCAGAGGTT+GGG - chr1.1:1186788-1186807 MS.gene27035:CDS 50.0%
CGTGAGATTTGACATCCTGG+AGG + chr1.1:1186658-1186677 None:intergenic 50.0%
GCAGCGAGATACTGCAATTG+CGG - chr1.1:1186540-1186559 MS.gene27035:CDS 50.0%
TAGCAGCCTCAAAGGCTGAT+TGG - chr1.1:1187001-1187020 MS.gene27035:CDS 50.0%
TGGTTCAATGCCAAGTCCTG+AGG + chr1.1:1187030-1187049 None:intergenic 50.0%
TTCCAGCTGTGCCCAACAAA+AGG - chr1.1:1187181-1187200 MS.gene27035:intron 50.0%
! AAAAGGCATGCTCGAGTAGG+TGG - chr1.1:1187198-1187217 MS.gene27035:intron 50.0%
! ACACCAGTACAAGAGCATGC+TGG + chr1.1:1187084-1187103 None:intergenic 50.0%
! CCCAACCTCTGAAGAAATGG+GGG + chr1.1:1186791-1186810 None:intergenic 50.0%
! GTGCTGCCTTTTTCTCAGAG+AGG + chr1.1:1186495-1186514 None:intergenic 50.0%
! TCTGGCCCTCTCTGAGAAAA+AGG - chr1.1:1186486-1186505 MS.gene27035:CDS 50.0%
AACCACCTAGGCGTGCCAAA+CGG - chr1.1:1186812-1186831 MS.gene27035:CDS 55.0%
AGCAGCCCCCATTTCTTCAG+AGG - chr1.1:1186783-1186802 MS.gene27035:CDS 55.0%
AGGGCATGATCTCTCACACC+CGG - chr1.1:1187275-1187294 MS.gene27035:intron 55.0%
CAGAGGTTGGGAAACCACCT+AGG - chr1.1:1186800-1186819 MS.gene27035:CDS 55.0%
CCCCGTGAGATTTGACATCC+TGG + chr1.1:1186661-1186680 None:intergenic 55.0%
CTGAAGAAATGGGGGCTGCT+GGG + chr1.1:1186783-1186802 None:intergenic 55.0%
GCACCAGCATGCTCTTGTAC+TGG - chr1.1:1187078-1187097 MS.gene27035:CDS 55.0%
GCCCCCATTTCTTCAGAGGT+TGG - chr1.1:1186787-1186806 MS.gene27035:CDS 55.0%
GGTATGTCATCATGCCCTCC+AGG - chr1.1:1186640-1186659 MS.gene27035:CDS 55.0%
TCTGAAGAAATGGGGGCTGC+TGG + chr1.1:1186784-1186803 None:intergenic 55.0%
TTGTTGGGCACAGCTGGAAG+TGG + chr1.1:1187180-1187199 None:intergenic 55.0%
! GTACAAGAGCATGCTGGTGC+TGG + chr1.1:1187078-1187097 None:intergenic 55.0%
! TGCCTTTTGTTGGGCACAGC+TGG + chr1.1:1187186-1187205 None:intergenic 55.0%
!! TTAGCCGGCTTGCAGCTGAA+GGG - chr1.1:1187256-1187275 MS.gene27035:intron 55.0%
AAGAAATGGGGGCTGCTGGG+AGG + chr1.1:1186780-1186799 None:intergenic 60.0%
AGAAATGGGGGCTGCTGGGA+GGG + chr1.1:1186779-1186798 None:intergenic 60.0%
CATGCCCTTCAGCTGCAAGC+CGG + chr1.1:1187263-1187282 None:intergenic 60.0%
TAGGCGTGCCAAACGGCCAA+AGG - chr1.1:1186819-1186838 MS.gene27035:CDS 60.0%
TTTGGCCGTTTGGCACGCCT+AGG + chr1.1:1186820-1186839 None:intergenic 60.0%
!! AGAGCATGCTGGTGCTGGCA+TGG + chr1.1:1187073-1187092 None:intergenic 60.0%
!! CTTAGCCGGCTTGCAGCTGA+AGG - chr1.1:1187255-1187274 MS.gene27035:intron 60.0%
GGCCGTTTGGCACGCCTAGG+TGG + chr1.1:1186817-1186836 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 1186209 1187356 1186209 ID=MS.gene27035
chr1.1 mRNA 1186209 1187356 1186209 ID=MS.gene27035.t1;Parent=MS.gene27035
chr1.1 exon 1187297 1187356 1187297 ID=MS.gene27035.t1.exon1;Parent=MS.gene27035.t1
chr1.1 CDS 1187297 1187356 1187297 ID=cds.MS.gene27035.t1;Parent=MS.gene27035.t1
chr1.1 exon 1186209 1187168 1186209 ID=MS.gene27035.t1.exon2;Parent=MS.gene27035.t1
chr1.1 CDS 1186209 1187168 1186209 ID=cds.MS.gene27035.t1;Parent=MS.gene27035.t1
Gene Sequence

>MS.gene27035

ATGGACGATCGTGAAAATGGAAGGCACAAAGCAGATCAATATAAATCTGCTCAGGGACAGGTATATGAAACACGCCTCTGCTCAGAAATAAATTTAAGTTTGCATGAACATAACAGTTGTTAAAAGTGCTGCATATACCTAAAAGGGTGCTTTCTCTACTAATATTCTTCTAAAAATTGCTTTTGCAGTGGTTAATGCAACAGCATCACCAGCATCCTTCCATGAAGCAAATTATGTCAATCATGGCTGAACGAGATGCAGCCATTCAAGAAAGAAATCTGGCCCTCTCTGAGAAAAAGGCAGCACTTGCAGAACGTGACATGGCATTCCTGCAGCGAGATACTGCAATTGCGGAACGGAATAATGCACTTATGGAAAGAGATAATGCGATTGCAACCCTTCAGTTTCGAGAAAATGCTTTGGCCAATGGTGGTATGTCATCATGCCCTCCAGGATGTCAAATCTCACGGGGAGTTAAGCATATACATCACCTTCCGCAACAGGTAAACCATTTGCCTAATATGGGTGATTCTTCTTACGGCACACGTGAATTGCACACAACTGATGCCCTCCCAGCAGCCCCCATTTCTTCAGAGGTTGGGAAACCACCTAGGCGTGCCAAACGGCCAAAGGAAAGTAAGTCTGATTCACCTAACAAGAAGACTCCAAAATCTAGAAAAGTCAAGAAAGAGGGTGATGATTTAAACAAGACAATGTTTGCCAACAACAAAGAGCTTGAATGGAAGAGTAGTGAGGAAATGATAAATGGAGATGATGATCTTAACAAGCAGTTAGCAGCCTCAAAGGCTGATTGGAAACCTCAGGACTTGGCATTGAACCAAGTTGCATACGATGATTCAACCATGCCAGCACCAGCATGCTCTTGTACTGGTGTTCTGAGACAGTGCTACAAATGGGGTAATGGAGGTTGGCAATCTGCTTGCTGTACAACCACTTTATCGGTATATCCACTTCCAGCTGTGCCCAACAAAAGGCATGCTCGAGTAGGTGGTAGAAAAATGAGTGGAAGTGCTTTCAATAAACTACTTAGCCGGCTTGCAGCTGAAGGGCATGATCTCTCACACCCGGTTGACCTTAAAGACCATTGGGCCAAACATGGTACAAATCGATACATCACAATAAAGTAG
Protein sequence

>MS.gene27035.t1

MDDRENGRHKADQYKSAQGQWLMQQHHQHPSMKQIMSIMAERDAAIQERNLALSEKKAALAERDMAFLQRDTAIAERNNALMERDNAIATLQFRENALANGGMSSCPPGCQISRGVKHIHHLPQQVNHLPNMGDSSYGTRELHTTDALPAAPISSEVGKPPRRAKRPKESKSDSPNKKTPKSRKVKKEGDDLNKTMFANNKELEWKSSEEMINGDDDLNKQLAASKADWKPQDLALNQVAYDDSTMPAPACSCTGVLRQCYKWGNGGWQSACCTTTLSVYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK