Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27108.t1 | XP_013466206.1 | 90.7 | 991 | 81 | 4 | 1 | 988 | 1 | 983 | 0.00E+00 | 1647.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27108.t1 | D5LXJ0 | 32.6 | 497 | 296 | 12 | 6 | 473 | 3 | 489 | 1.0e-49 | 200.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27108.t1 | A0A072VF72 | 90.7 | 991 | 81 | 4 | 1 | 988 | 1 | 983 | 0.0e+00 | 1647.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049438 | MS.gene27108 | -0.8001 | 1.69E-48 | -1.69E-46 |
MS.gene052309 | MS.gene27108 | 0.864265 | 1.38E-64 | -1.69E-46 |
MS.gene052358 | MS.gene27108 | 0.816726 | 4.77E-52 | -1.69E-46 |
MS.gene05509 | MS.gene27108 | 0.809593 | 1.75E-50 | -1.69E-46 |
MS.gene056830 | MS.gene27108 | 0.800775 | 1.23E-48 | -1.69E-46 |
MS.gene058500 | MS.gene27108 | -0.80336 | 3.62E-49 | -1.69E-46 |
MS.gene058661 | MS.gene27108 | 0.828148 | 1.06E-54 | -1.69E-46 |
MS.gene059033 | MS.gene27108 | 0.821112 | 4.80E-53 | -1.69E-46 |
MS.gene059872 | MS.gene27108 | 0.83076 | 2.45E-55 | -1.69E-46 |
MS.gene061040 | MS.gene27108 | 0.824204 | 9.16E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27108.t1 | MTR_1g026290 | 96.569 | 991 | 23 | 4 | 1 | 988 | 1 | 983 | 0.0 | 1890 |
MS.gene27108.t1 | MTR_1g026290 | 96.181 | 995 | 23 | 5 | 1 | 988 | 1 | 987 | 0.0 | 1884 |
MS.gene27108.t1 | MTR_1g026290 | 96.154 | 910 | 27 | 3 | 14 | 923 | 17 | 918 | 0.0 | 1706 |
MS.gene27108.t1 | MTR_1g026290 | 96.260 | 909 | 26 | 3 | 14 | 922 | 17 | 917 | 0.0 | 1704 |
MS.gene27108.t1 | MTR_1g026290 | 97.269 | 769 | 14 | 2 | 220 | 988 | 1 | 762 | 0.0 | 1479 |
MS.gene27108.t1 | MTR_4g116370 | 34.615 | 520 | 279 | 16 | 10 | 493 | 11 | 505 | 4.43e-60 | 219 |
MS.gene27108.t1 | MTR_4g116370 | 34.615 | 520 | 279 | 16 | 10 | 493 | 19 | 513 | 4.95e-60 | 219 |
MS.gene27108.t1 | MTR_4g116370 | 33.201 | 503 | 277 | 16 | 29 | 493 | 10 | 491 | 5.01e-52 | 195 |
MS.gene27108.t1 | MTR_4g116370 | 31.061 | 396 | 225 | 13 | 134 | 493 | 34 | 417 | 1.75e-30 | 129 |
MS.gene27108.t1 | MTR_4g116370 | 33.569 | 283 | 160 | 9 | 234 | 493 | 58 | 335 | 3.95e-27 | 117 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27108.t1 | AT5G42220 | 46.509 | 888 | 377 | 25 | 1 | 855 | 1 | 823 | 0.0 | 609 |
MS.gene27108.t1 | AT5G42220 | 46.509 | 888 | 377 | 25 | 1 | 855 | 1 | 823 | 0.0 | 609 |
MS.gene27108.t1 | AT5G25270 | 34.988 | 423 | 225 | 14 | 24 | 429 | 20 | 409 | 8.53e-52 | 193 |
MS.gene27108.t1 | AT5G11080 | 33.939 | 165 | 91 | 6 | 24 | 184 | 10 | 160 | 3.68e-13 | 72.4 |
MS.gene27108.t1 | AT5G11080 | 33.939 | 165 | 91 | 6 | 24 | 184 | 10 | 160 | 8.47e-13 | 71.6 |
Find 312 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCGTAGGGTGCACGGGTTTC+TGG | 0.081281 | 1.1:-179755 | None:intergenic |
ATGTTCATCTGTGGGCTTTC+TGG | 0.145540 | 1.1:-179560 | None:intergenic |
CTCTGTTCATTTACCTGTTC+AGG | 0.186974 | 1.1:-177068 | None:intergenic |
CTTTCTTGTACAGGAATATT+TGG | 0.188581 | 1.1:+180917 | MS.gene27108:intron |
GTAATATGGTTTCAGGTTAT+TGG | 0.197097 | 1.1:+172980 | MS.gene27108:intron |
TGACAAACCTGCACCATTAT+AGG | 0.224010 | 1.1:-175287 | None:intergenic |
TAATATGGTTTCAGGTTATT+GGG | 0.238705 | 1.1:+172981 | MS.gene27108:intron |
AAGGGCTTCTGATGATCTTT+TGG | 0.244313 | 1.1:+180753 | MS.gene27108:CDS |
GCAGGTTGACAGTCAGGATA+TGG | 0.259529 | 1.1:+179601 | MS.gene27108:CDS |
GCAGGTTGGCAGTCAGGATA+TGG | 0.262907 | 1.1:+179403 | MS.gene27108:CDS |
GGGTGCACTTCTACTTGAAC+TGG | 0.270093 | 1.1:+175088 | MS.gene27108:CDS |
GAAGAAGTTTGTGCGGAATT+AGG | 0.272535 | 1.1:-173052 | None:intergenic |
CCCTGCTAGTTGATTGCATT+TGG | 0.273481 | 1.1:-177019 | None:intergenic |
AGGTTAGTTGAAGATATATT+TGG | 0.275645 | 1.1:-174054 | None:intergenic |
GAGCCCGGTTCTGGTGATTC+AGG | 0.283347 | 1.1:+176600 | MS.gene27108:CDS |
TCATTTACCTGTTCAGGTCT+TGG | 0.283401 | 1.1:-177062 | None:intergenic |
AAGCTGCTCGAAGGACGTTC+TGG | 0.292892 | 1.1:+180963 | MS.gene27108:CDS |
CTGTCAACCTGCTGGGCAAT+CGG | 0.292962 | 1.1:-179590 | None:intergenic |
ACTAGCAGGGACTTGTCTTC+TGG | 0.308253 | 1.1:+177032 | MS.gene27108:CDS |
CTTGTCCCTTCCCCATTGTT+TGG | 0.310487 | 1.1:-176561 | None:intergenic |
CAGTCCAAGAGGAGCAGTTT+TGG | 0.314139 | 1.1:-177438 | None:intergenic |
TATTACCAACAGAGTTTCTA+AGG | 0.317262 | 1.1:-176791 | None:intergenic |
AGGAATTGCTATGCAGCATT+TGG | 0.319967 | 1.1:+175067 | MS.gene27108:CDS |
ACCTGCACCATTATAGGATT+TGG | 0.321015 | 1.1:-175281 | None:intergenic |
GGGTTAGATGGGAGAGTTGC+TGG | 0.327771 | 1.1:-176657 | None:intergenic |
ATGCTAACTGGAACGGAAAC+AGG | 0.333341 | 1.1:+179629 | MS.gene27108:CDS |
GCACCAATTGTTTCAGCAAT+TGG | 0.338308 | 1.1:+176531 | MS.gene27108:CDS |
TCTTCAACTCCTGCAACTTT+AGG | 0.346394 | 1.1:+176377 | MS.gene27108:CDS |
CACCGTAGTGAGCCCGGTTC+TGG | 0.349753 | 1.1:+176591 | MS.gene27108:CDS |
CTTCAAACAAGCTCCTTGTT+TGG | 0.351103 | 1.1:+176341 | MS.gene27108:CDS |
ATGAGTCGTTGCTGATTAAC+TGG | 0.353590 | 1.1:-172349 | None:intergenic |
GAACATGCACTCTCTCAAAA+TGG | 0.354321 | 1.1:+173951 | MS.gene27108:CDS |
ATGAGCGGACGTGGGGCTTC+CGG | 0.360117 | 1.1:+177104 | MS.gene27108:CDS |
ACAACTTTGTAAATCTTGAT+TGG | 0.360242 | 1.1:-177333 | None:intergenic |
GCAGTTTATATTTCTCCATC+AGG | 0.362139 | 1.1:+175257 | MS.gene27108:CDS |
TTCTGATAATCGAAGTTTGC+AGG | 0.364782 | 1.1:+179787 | MS.gene27108:CDS |
TAATGATGAGAGAGATGTTT+TGG | 0.365444 | 1.1:+177286 | MS.gene27108:CDS |
TTGTGACTCTAGCATATTGC+AGG | 0.375677 | 1.1:+174972 | MS.gene27108:intron |
TTTCACACAGTGTGGTTCTT+GGG | 0.376592 | 1.1:+172773 | MS.gene27108:CDS |
GCTGCTGGCAGCACACCATC+TGG | 0.377689 | 1.1:+176693 | MS.gene27108:CDS |
GGAGCACTTCCAACACCAAC+GGG | 0.378459 | 1.1:-176401 | None:intergenic |
CAGTCAGAGTCAGTACAAAT+AGG | 0.378536 | 1.1:+175047 | MS.gene27108:CDS |
CCTCTGCCCTCCTTCCGTTC+CGG | 0.379314 | 1.1:-179438 | None:intergenic |
CCGATGCCAGAAGGGTTAGA+TGG | 0.380811 | 1.1:-176669 | None:intergenic |
TTAATTTGATAAATGCTGAT+AGG | 0.382229 | 1.1:+179177 | MS.gene27108:CDS |
AGATGACAATGGAGCTGAAT+CGG | 0.385957 | 1.1:-176745 | None:intergenic |
GATCCGTCATCAGCACCTTT+AGG | 0.387358 | 1.1:-179068 | None:intergenic |
GGCAACCCTTGTGTATTAGA+AGG | 0.388446 | 1.1:-174099 | None:intergenic |
ATTTCACACAGTGTGGTTCT+TGG | 0.390711 | 1.1:+172772 | MS.gene27108:CDS |
CTAAATAGTCCTGCTTTGAA+TGG | 0.397811 | 1.1:+179263 | MS.gene27108:CDS |
TGCCCAGCAGGTTGGCAGTC+AGG | 0.400197 | 1.1:+179397 | MS.gene27108:CDS |
TGTTGCAACGAGAGTCTTGC+CGG | 0.402364 | 1.1:+180784 | MS.gene27108:CDS |
TGCCCAGCAGGTTGACAGTC+AGG | 0.410461 | 1.1:+179595 | MS.gene27108:CDS |
CGAACCTGAATCACCAGAAC+CGG | 0.412370 | 1.1:-176604 | None:intergenic |
ATCAGGGCCAAATCCTATAA+TGG | 0.413483 | 1.1:+175274 | MS.gene27108:CDS |
ACTCTCCCATCTAACCCTTC+TGG | 0.413671 | 1.1:+176663 | MS.gene27108:CDS |
GTGCTCCTCGTAGCCGTGTT+GGG | 0.414635 | 1.1:+172746 | MS.gene27108:CDS |
GCTGGTATGACATTTCTAAC+AGG | 0.415527 | 1.1:-176639 | None:intergenic |
TTGTCTTTGAACAGCGAAAC+GGG | 0.418382 | 1.1:-172304 | None:intergenic |
ACCTTTAGGAGGTTGGAGTC+TGG | 0.421199 | 1.1:-179054 | None:intergenic |
TTGTTCAGAAACATTGGTAC+TGG | 0.424220 | 1.1:-172086 | None:intergenic |
ATCTGAACCAAGACCTGAAC+AGG | 0.426549 | 1.1:+177055 | MS.gene27108:CDS |
AGGAAATCAAGCTGGAAATC+AGG | 0.426719 | 1.1:+173697 | MS.gene27108:CDS |
GGTCAGCCCGATTGCCCAGC+AGG | 0.428555 | 1.1:+179583 | MS.gene27108:CDS |
GGAATTGCTATGCAGCATTT+GGG | 0.432404 | 1.1:+175068 | MS.gene27108:CDS |
GCTGGAAATCAGGCACCATC+TGG | 0.433495 | 1.1:+173707 | MS.gene27108:CDS |
TATCCTGACTGCCAACCTGC+TGG | 0.435244 | 1.1:-179400 | None:intergenic |
TTGACTCACCTGATGGCTTA+AGG | 0.438048 | 1.1:+179318 | MS.gene27108:CDS |
CCAACGGGGCCTAAAGTTGC+AGG | 0.440187 | 1.1:-176386 | None:intergenic |
GACAAAATTGCAACTGAAGT+AGG | 0.442503 | 1.1:+172322 | MS.gene27108:CDS |
ACGGAAACAGGGCAGGGTGG+TGG | 0.443483 | 1.1:+179641 | MS.gene27108:CDS |
TTCGCAGTGTTAACATAGTT+CGG | 0.443754 | 1.1:-175112 | None:intergenic |
GAATGGCCATACATTGCATT+TGG | 0.444494 | 1.1:+172526 | MS.gene27108:CDS |
GATATGGGGAATATGCTAAC+TGG | 0.446741 | 1.1:+179617 | MS.gene27108:CDS |
TCACTGCCGGACCCCGTAGC+AGG | 0.447048 | 1.1:-172578 | None:intergenic |
CTTTGAATGGTTTGTTGGAA+GGG | 0.448136 | 1.1:+179276 | MS.gene27108:CDS |
TATCCTGACTGTCAACCTGC+TGG | 0.448937 | 1.1:-179598 | None:intergenic |
CCTGCCAAAACTGCTCCTCT+TGG | 0.448981 | 1.1:+177434 | MS.gene27108:CDS |
CCTTCTGGCATCGGAGCTGC+TGG | 0.449331 | 1.1:+176678 | MS.gene27108:CDS |
AAAGGAAACAATGTTGGATC+AGG | 0.451832 | 1.1:+172724 | MS.gene27108:intron |
CAGACAGTGTGTTGAGGGAA+TGG | 0.453201 | 1.1:-173911 | None:intergenic |
CGTACAGAACAGTTGCTTAG+TGG | 0.453630 | 1.1:+174153 | MS.gene27108:CDS |
AGACAGTGTGTTGAGGGAAT+GGG | 0.453746 | 1.1:-173910 | None:intergenic |
GTGTTGAGGGAATGGGGAAT+TGG | 0.453924 | 1.1:-173903 | None:intergenic |
ACTGCGAATGGGACAGTCTT+CGG | 0.454831 | 1.1:+175127 | MS.gene27108:CDS |
TCCTATCAGCCACTGGTTGA+AGG | 0.458836 | 1.1:-180657 | None:intergenic |
TAATTCCGCACAAACTTCTT+CGG | 0.459355 | 1.1:+173054 | MS.gene27108:CDS |
ACGGAAGGAGGGCAGAGGGG+TGG | 0.459563 | 1.1:+179443 | MS.gene27108:CDS |
GAGCCAATTGCTGAAACAAT+TGG | 0.459970 | 1.1:-176534 | None:intergenic |
AGCTGCTCGAAGGACGTTCT+GGG | 0.461367 | 1.1:+180964 | MS.gene27108:CDS |
CAAAACTGCTCCTCTTGGAC+TGG | 0.461628 | 1.1:+177439 | MS.gene27108:CDS |
TTCTTTCATCAATCAAAGTC+AGG | 0.461942 | 1.1:+179097 | MS.gene27108:CDS |
TTTCCTTCAGTTTCGTTCCC+CGG | 0.463751 | 1.1:-173680 | None:intergenic |
GAGGGAACTTCTGCTGATCT+AGG | 0.464850 | 1.1:+175008 | MS.gene27108:CDS |
CTGACTACCGCTGGTGGGCA+AGG | 0.465410 | 1.1:-179210 | None:intergenic |
CAAACAAGCTCCTTGTTTGG+CGG | 0.466746 | 1.1:+176344 | MS.gene27108:CDS |
CAGAGTTTCTAAGGTGTGAC+TGG | 0.466854 | 1.1:-176782 | None:intergenic |
GCAGGAGTGTGTGTCTGATT+TGG | 0.470969 | 1.1:-172560 | None:intergenic |
GATATGGGGAATATGTTAAC+CGG | 0.471960 | 1.1:+179419 | MS.gene27108:CDS |
GCAGAATCTGTTGTTAATGC+TGG | 0.472329 | 1.1:+175230 | MS.gene27108:CDS |
ATGTGAATGTTTACGTTCCT+AGG | 0.472527 | 1.1:-176422 | None:intergenic |
CATTTGAAAGGAAACAATGT+TGG | 0.473006 | 1.1:+172718 | MS.gene27108:intron |
TTGGCTCTAGACCAAACAAT+GGG | 0.473293 | 1.1:+176550 | MS.gene27108:CDS |
TGTCAGTCAGATTGCCCAGC+AGG | 0.474074 | 1.1:+179385 | MS.gene27108:CDS |
TCATGTTGTTCAGATTCCTA+TGG | 0.474117 | 1.1:+173751 | MS.gene27108:CDS |
CCATCTAACCCTTCTGGCAT+CGG | 0.474223 | 1.1:+176669 | MS.gene27108:CDS |
CCCTTTCACTGCTAGACAGC+TGG | 0.474737 | 1.1:-180735 | None:intergenic |
ACTTTAGGCCCCGTTGGTGT+TGG | 0.474796 | 1.1:+176392 | MS.gene27108:CDS |
TTTCAACCAAATGCAATGTA+TGG | 0.475715 | 1.1:-172532 | None:intergenic |
TCCTGCTTTGAATGGTTTGT+TGG | 0.475916 | 1.1:+179271 | MS.gene27108:CDS |
AACTATGTTAACACTGCGAA+TGG | 0.476187 | 1.1:+175115 | MS.gene27108:CDS |
TCTCGCCTTTCACTTGAAGA+TGG | 0.477787 | 1.1:-177401 | None:intergenic |
CACACTCCTGCTACGGGGTC+CGG | 0.479486 | 1.1:+172572 | MS.gene27108:CDS |
ACTTTGATTGATGAAAGAAC+TGG | 0.480329 | 1.1:-179093 | None:intergenic |
AAAATATATTGCAAACACTC+GGG | 0.480549 | 1.1:+179138 | MS.gene27108:CDS |
GCCAAATGCAATCAACTAGC+AGG | 0.482738 | 1.1:+177018 | MS.gene27108:CDS |
TTCATTCCCGTAGGGTGCAC+GGG | 0.484925 | 1.1:-179762 | None:intergenic |
GAGCTTGTTTGAAGTGGAAA+TGG | 0.485347 | 1.1:-176332 | None:intergenic |
ACCGCGGAGATGAGCGGACG+TGG | 0.485367 | 1.1:+177095 | MS.gene27108:CDS |
TGTCAACCTGCTGGGCAATC+GGG | 0.485522 | 1.1:-179589 | None:intergenic |
GCATTTCTCAAGACATTACT+CGG | 0.487020 | 1.1:+172827 | MS.gene27108:CDS |
GTTGGTTGCACTTCTGAAAG+TGG | 0.487800 | 1.1:+177137 | MS.gene27108:CDS |
GGCTGACCATGTTCATCTGT+GGG | 0.487914 | 1.1:-179568 | None:intergenic |
ACCTTCAACCAGTGGCTGAT+AGG | 0.490194 | 1.1:+180656 | MS.gene27108:CDS |
GTTCAGATTCCTATGGCTGC+GGG | 0.490634 | 1.1:+173758 | MS.gene27108:CDS |
CCAGCAGCTCCGATGCCAGA+AGG | 0.490801 | 1.1:-176678 | None:intergenic |
GTGGTTAGTGCTTCAAGTGT+TGG | 0.491485 | 1.1:-174120 | None:intergenic |
ATCTCTCTCATCATTACTAC+AGG | 0.491809 | 1.1:-177279 | None:intergenic |
CAGGTTGGCAGTCAGGATAT+GGG | 0.492293 | 1.1:+179404 | MS.gene27108:CDS |
CAGGTTGACAGTCAGGATAT+GGG | 0.492293 | 1.1:+179602 | MS.gene27108:CDS |
AATATATCTTCAACTAACCT+TGG | 0.492822 | 1.1:+174057 | MS.gene27108:CDS |
AACTGGAACGGAAACAGGGC+AGG | 0.493231 | 1.1:+179634 | MS.gene27108:CDS |
CATCAGCACCTTTAGGAGGT+TGG | 0.493318 | 1.1:-179061 | None:intergenic |
TTTCATTCCCGTAGGGTGCA+CGG | 0.495737 | 1.1:-179763 | None:intergenic |
GCTTTGAATGGTTTGTTGGA+AGG | 0.495809 | 1.1:+179275 | MS.gene27108:CDS |
TCAGACACACACTCCTGCTA+CGG | 0.495909 | 1.1:+172565 | MS.gene27108:CDS |
CAGACACACACTCCTGCTAC+GGG | 0.497357 | 1.1:+172566 | MS.gene27108:CDS |
CCCTCCGAGAGCTTGTATCA+TGG | 0.498027 | 1.1:-179699 | None:intergenic |
AACATGCTCCTTAAGCCATC+AGG | 0.499359 | 1.1:-179326 | None:intergenic |
AACAAGGAGCTTGTTTGAAG+TGG | 0.499575 | 1.1:-176338 | None:intergenic |
CCGGAACGGAAGGAGGGCAG+AGG | 0.500044 | 1.1:+179438 | MS.gene27108:CDS |
ATTGTATCACAAGCCCTTGG+TGG | 0.501552 | 1.1:+179503 | MS.gene27108:CDS |
GGTGCTCCTCGTAGCCGTGT+TGG | 0.503290 | 1.1:+172745 | MS.gene27108:CDS |
GATGACAATGGAGCTGAATC+GGG | 0.503305 | 1.1:-176744 | None:intergenic |
GCGAATCAATCTTCAAATGA+AGG | 0.505900 | 1.1:+172055 | MS.gene27108:CDS |
ATTATAGGATTTGGCCCTGA+TGG | 0.508302 | 1.1:-175272 | None:intergenic |
CGGAACGGAAGGAGGGCAGA+GGG | 0.509216 | 1.1:+179439 | MS.gene27108:CDS |
CTGGTGATTCAGGTTCGACA+CGG | 0.513653 | 1.1:+176610 | MS.gene27108:CDS |
TTTGTCTTTGAACAGCGAAA+CGG | 0.514925 | 1.1:-172305 | None:intergenic |
GATTTACAAAGTTGTTCTAG+TGG | 0.515216 | 1.1:+177341 | MS.gene27108:CDS |
GGCTCTGCAGCAGAGAATAG+TGG | 0.516233 | 1.1:-179734 | None:intergenic |
ATCTGAACAACATGAGGAAA+CGG | 0.516291 | 1.1:-173743 | None:intergenic |
TGTGGCGGGTTTAATGTCTC+AGG | 0.517663 | 1.1:+179238 | MS.gene27108:CDS |
TGTTCAGATTCCTATGGCTG+CGG | 0.519569 | 1.1:+173757 | MS.gene27108:CDS |
ACTGCATTGAAAGAAGGAAC+AGG | 0.520422 | 1.1:-173788 | None:intergenic |
GAACACAGACAGTGTGTTGA+GGG | 0.521105 | 1.1:-173916 | None:intergenic |
TCCACTAAAGATGTTGAGAA+TGG | 0.521526 | 1.1:+172509 | MS.gene27108:intron |
ATTCCTACTGCATTGAAAGA+AGG | 0.523356 | 1.1:-173794 | None:intergenic |
GTTCTTGGGACTATTAATGT+GGG | 0.523988 | 1.1:+172787 | MS.gene27108:CDS |
GCCAAATCCTATAATGGTGC+AGG | 0.524609 | 1.1:+175280 | MS.gene27108:CDS |
GGTTCTTGGGACTATTAATG+TGG | 0.525047 | 1.1:+172786 | MS.gene27108:CDS |
CAAAATATATTGCAAACACT+CGG | 0.525718 | 1.1:+179137 | MS.gene27108:CDS |
GGAACGGAAGGAGGGCAGAG+GGG | 0.527535 | 1.1:+179440 | MS.gene27108:CDS |
TCCAGCTGTCTAGCAGTGAA+AGG | 0.528815 | 1.1:+180734 | MS.gene27108:CDS |
ATCTTGTTGTTCAGAAACAT+TGG | 0.528977 | 1.1:-172092 | None:intergenic |
GGGCTGACCATGTTCATCTG+TGG | 0.529144 | 1.1:-179569 | None:intergenic |
TCTGCTGATCTAGGTGTAAG+AGG | 0.529800 | 1.1:+175017 | MS.gene27108:CDS |
CCTCCGAGAGCTTGTATCAT+GGG | 0.530428 | 1.1:-179698 | None:intergenic |
CCAAGGGCTTGTGATACAAT+GGG | 0.531514 | 1.1:-179500 | None:intergenic |
CCAGAAACCCGTGCACCCTA+CGG | 0.531887 | 1.1:+179755 | MS.gene27108:CDS |
GCTTCCGGTGTATCCTCAGT+TGG | 0.536156 | 1.1:+177119 | MS.gene27108:CDS |
GATGGAGAAATATAAACTGC+TGG | 0.536793 | 1.1:-175254 | None:intergenic |
GGGGTGGTGTTGACCTCTCA+AGG | 0.536912 | 1.1:+179459 | MS.gene27108:CDS |
TGCAGGACGCATGGAGCGAG+AGG | 0.537065 | 1.1:+174989 | MS.gene27108:CDS |
TGGTGATTCAGGTTCGACAC+GGG | 0.537877 | 1.1:+176611 | MS.gene27108:CDS |
CGGTAGTCAGATTGATGTGG+CGG | 0.538847 | 1.1:+179223 | MS.gene27108:CDS |
AAAACTGCTCCTCTTGGACT+GGG | 0.539076 | 1.1:+177440 | MS.gene27108:CDS |
TTGTATCACAAGCCCTTGGT+GGG | 0.540065 | 1.1:+179504 | MS.gene27108:CDS |
TGACAGTGTTCATCATCTGC+GGG | 0.540994 | 1.1:-179367 | None:intergenic |
ACCAGACTCCAACCTCCTAA+AGG | 0.542230 | 1.1:+179053 | MS.gene27108:CDS |
ACCAAGGGCTTGTGATACAA+TGG | 0.542806 | 1.1:-179501 | None:intergenic |
CAGAAACCCGTGCACCCTAC+GGG | 0.542977 | 1.1:+179756 | MS.gene27108:CDS |
AACTCTGTTGGTAATATGCA+AGG | 0.543610 | 1.1:+176798 | MS.gene27108:CDS |
GAAACTGAAGGAAATCAAGC+TGG | 0.543666 | 1.1:+173689 | MS.gene27108:CDS |
TAGGAGCATTCATTGTGCCC+TGG | 0.544651 | 1.1:-173033 | None:intergenic |
AAATCAGGCACCATCTGGAC+AGG | 0.545938 | 1.1:+173712 | MS.gene27108:CDS |
TGCACTAGCTGTCTCACTGC+CGG | 0.547750 | 1.1:-172591 | None:intergenic |
GTCTGTGTTCATAAATCGCA+TGG | 0.548128 | 1.1:+173929 | MS.gene27108:CDS |
ATCCTGACTGCCAACCTGCT+GGG | 0.548407 | 1.1:-179399 | None:intergenic |
CTAGCATATTGCAGGACGCA+TGG | 0.549101 | 1.1:+174980 | MS.gene27108:intron |
TGACTACCGCTGGTGGGCAA+GGG | 0.550222 | 1.1:-179209 | None:intergenic |
ACTGAACACCGTAGTGAGCC+CGG | 0.552562 | 1.1:+176585 | MS.gene27108:CDS |
ATCAATCTGACTACCGCTGG+TGG | 0.553084 | 1.1:-179216 | None:intergenic |
GGTGCACTTCTACTTGAACT+GGG | 0.554167 | 1.1:+175089 | MS.gene27108:CDS |
AGAAAGTGGACCGCCAAACA+AGG | 0.554785 | 1.1:-176354 | None:intergenic |
CCAGGTTGACCTTCAACCAG+TGG | 0.554927 | 1.1:+180648 | MS.gene27108:intron |
TATGAGTGGTTTAGAGCGTA+AGG | 0.555258 | 1.1:+177463 | MS.gene27108:CDS |
TTCTGAAAGTGGAGTAGAGA+AGG | 0.555816 | 1.1:+177148 | MS.gene27108:CDS |
ACTATGTTAACACTGCGAAT+GGG | 0.555829 | 1.1:+175116 | MS.gene27108:CDS |
AGATATCTGTAGGTGGACTC+AGG | 0.555870 | 1.1:-180687 | None:intergenic |
ATGATACAAGCTCTCGGAGG+GGG | 0.556251 | 1.1:+179701 | MS.gene27108:CDS |
CCAGCTGTCTAGCAGTGAAA+GGG | 0.556611 | 1.1:+180735 | MS.gene27108:CDS |
TCAATCAAAGTCAGGAAACC+AGG | 0.557847 | 1.1:+179105 | MS.gene27108:CDS |
GAACAACATGAGGAAACGGT+TGG | 0.558266 | 1.1:-173739 | None:intergenic |
CCCATTGTATCACAAGCCCT+TGG | 0.558380 | 1.1:+179500 | MS.gene27108:CDS |
ATTTGAAGATTGATTCGCCA+TGG | 0.560305 | 1.1:-172050 | None:intergenic |
GGTTCTGTAGCAGAGAATAG+TGG | 0.560598 | 1.1:-179539 | None:intergenic |
CCATGATACAAGCTCTCGGA+GGG | 0.562487 | 1.1:+179699 | MS.gene27108:CDS |
CGATCAATCCTATCAGCCAC+TGG | 0.564835 | 1.1:-180664 | None:intergenic |
GTATCACAAGCCCTTGGTGG+GGG | 0.565830 | 1.1:+179506 | MS.gene27108:CDS |
GCAGGAGTTGAAGAAGAAAG+TGG | 0.566669 | 1.1:-176368 | None:intergenic |
CAGTTTATATTTCTCCATCA+GGG | 0.566861 | 1.1:+175258 | MS.gene27108:CDS |
CGATGCCAGAAGGGTTAGAT+GGG | 0.567423 | 1.1:-176668 | None:intergenic |
GACAGTGTGTTGAGGGAATG+GGG | 0.567926 | 1.1:-173909 | None:intergenic |
ATCCTGACTGTCAACCTGCT+GGG | 0.568139 | 1.1:-179597 | None:intergenic |
GGTATGGCTCCCGCAGCCAT+AGG | 0.569031 | 1.1:-173767 | None:intergenic |
AGTCAGGAAACCAGGACAGA+TGG | 0.569397 | 1.1:+179113 | MS.gene27108:CDS |
TTCTTGGGACTATTAATGTG+GGG | 0.569682 | 1.1:+172788 | MS.gene27108:CDS |
AAATATATTGCAAACACTCG+GGG | 0.570038 | 1.1:+179139 | MS.gene27108:CDS |
GGATACGATAGTGAGAAAGA+AGG | 0.570907 | 1.1:-172402 | None:intergenic |
ATGTTAACCGGAACGGAAGG+AGG | 0.571880 | 1.1:+179431 | MS.gene27108:CDS |
CACATCAATCTGACTACCGC+TGG | 0.573025 | 1.1:-179219 | None:intergenic |
CCTCTTGGACTGGGTATGAG+TGG | 0.573762 | 1.1:+177449 | MS.gene27108:CDS |
TCTTGGGACTATTAATGTGG+GGG | 0.574459 | 1.1:+172789 | MS.gene27108:CDS |
GCTCGAAGGACGTTCTGGGA+GGG | 0.576177 | 1.1:+180968 | MS.gene27108:CDS |
TCCAACAAACCATTCAAAGC+AGG | 0.577193 | 1.1:-179272 | None:intergenic |
GTGGTGGTCTCGACTTCTCA+AGG | 0.577739 | 1.1:+179657 | MS.gene27108:CDS |
CTGACAGTGTTCATCATCTG+CGG | 0.578106 | 1.1:-179368 | None:intergenic |
CCGTCATCAGCACCTTTAGG+AGG | 0.578916 | 1.1:-179065 | None:intergenic |
TTGGTGTTGGAAGTGCTCCT+AGG | 0.580894 | 1.1:+176405 | MS.gene27108:CDS |
CACCAGAACCGGGCTCACTA+CGG | 0.581466 | 1.1:-176593 | None:intergenic |
ATGCTCCATCTTCAAGTGAA+AGG | 0.582046 | 1.1:+177396 | MS.gene27108:CDS |
GCAGCAGAGAATAGTGGTGG+AGG | 0.584726 | 1.1:-179728 | None:intergenic |
CCTGCAACTTTAGGCCCCGT+TGG | 0.585045 | 1.1:+176386 | MS.gene27108:CDS |
ACGGGAGTTGACTCACCTGA+TGG | 0.587577 | 1.1:+179311 | MS.gene27108:CDS |
CGCGGAGATGAGCGGACGTG+GGG | 0.588211 | 1.1:+177097 | MS.gene27108:CDS |
TGAAACAATTGGTGCAAGAG+AGG | 0.589969 | 1.1:-176523 | None:intergenic |
CCTTCAGTTTCGTTCCCCGG+TGG | 0.591488 | 1.1:-173677 | None:intergenic |
CAGCGACCCTTGCCCACCAG+CGG | 0.592187 | 1.1:+179203 | MS.gene27108:CDS |
TGTATCACAAGCCCTTGGTG+GGG | 0.593198 | 1.1:+179505 | MS.gene27108:CDS |
CAAACAATGGGGAAGGGACA+AGG | 0.594079 | 1.1:+176562 | MS.gene27108:CDS |
AATATGTTAACCGGAACGGA+AGG | 0.594563 | 1.1:+179428 | MS.gene27108:CDS |
CAGCAGCTCCGATGCCAGAA+GGG | 0.595475 | 1.1:-176677 | None:intergenic |
GGTAGTCAGATTGATGTGGC+GGG | 0.595486 | 1.1:+179224 | MS.gene27108:CDS |
GGGGAATATGCTAACTGGAA+CGG | 0.596357 | 1.1:+179622 | MS.gene27108:CDS |
GTAGCAGAGAATAGTGGTGG+AGG | 0.597993 | 1.1:-179533 | None:intergenic |
GTAAACATTCACATACATGC+TGG | 0.598953 | 1.1:+176431 | MS.gene27108:CDS |
TGAACACAGACAGTGTGTTG+AGG | 0.599080 | 1.1:-173917 | None:intergenic |
CCAAATGCAATCAACTAGCA+GGG | 0.599347 | 1.1:+177019 | MS.gene27108:CDS |
CCTCCTAAAGGTGCTGATGA+CGG | 0.599760 | 1.1:+179065 | MS.gene27108:CDS |
GGGGAATATGTTAACCGGAA+CGG | 0.601844 | 1.1:+179424 | MS.gene27108:CDS |
GGTGATTCAGGTTCGACACG+GGG | 0.602931 | 1.1:+176612 | MS.gene27108:CDS |
TCTAGACCAAACAATGGGGA+AGG | 0.604140 | 1.1:+176555 | MS.gene27108:CDS |
ATTGAAAGAAGGAACAGGTA+TGG | 0.608235 | 1.1:-173783 | None:intergenic |
AATATGGTTTCAGGTTATTG+GGG | 0.609927 | 1.1:+172982 | MS.gene27108:intron |
TTGATTGATGAAAGAACTGG+AGG | 0.610446 | 1.1:-179090 | None:intergenic |
CATTTCTCAAGACATTACTC+GGG | 0.611396 | 1.1:+172828 | MS.gene27108:CDS |
AGGAGCACTTCCAACACCAA+CGG | 0.613156 | 1.1:-176402 | None:intergenic |
ATGCCCATGATACAAGCTCT+CGG | 0.617587 | 1.1:+179695 | MS.gene27108:CDS |
AGTCAGATTGCCCAGCAGGT+TGG | 0.619153 | 1.1:+179389 | MS.gene27108:CDS |
AGGTTGGCAGTCAGGATATG+GGG | 0.622013 | 1.1:+179405 | MS.gene27108:CDS |
AGGTTGACAGTCAGGATATG+GGG | 0.622013 | 1.1:+179603 | MS.gene27108:CDS |
ATCGGGTGGTAGCTGTGAAG+TGG | 0.627292 | 1.1:-176727 | None:intergenic |
TCTGTTGAAGCATCCTTGAG+AGG | 0.630215 | 1.1:-179472 | None:intergenic |
TGCTAACTGGAACGGAAACA+GGG | 0.630324 | 1.1:+179630 | MS.gene27108:CDS |
ATAGGAATCTGAACAACATG+AGG | 0.630849 | 1.1:-173749 | None:intergenic |
CCACTCATACCCAGTCCAAG+AGG | 0.633234 | 1.1:-177449 | None:intergenic |
TGTTAACCGGAACGGAAGGA+GGG | 0.633672 | 1.1:+179432 | MS.gene27108:CDS |
TTCAGAAGTGCAACCAACTG+AGG | 0.633745 | 1.1:-177132 | None:intergenic |
GGTTGGAATGCCTGTCCAGA+TGG | 0.633876 | 1.1:-173722 | None:intergenic |
TGGGCAAATTTCACACAGTG+TGG | 0.634556 | 1.1:+172765 | MS.gene27108:CDS |
GAACCTGAATCACCAGAACC+GGG | 0.636088 | 1.1:-176603 | None:intergenic |
ATTCTGCTCGTTGATCTCCA+AGG | 0.637073 | 1.1:-174074 | None:intergenic |
CCGCGGAGATGAGCGGACGT+GGG | 0.638934 | 1.1:+177096 | MS.gene27108:CDS |
CCACCGGGGAACGAAACTGA+AGG | 0.639658 | 1.1:+173677 | MS.gene27108:CDS |
TGCTCGAAGGACGTTCTGGG+AGG | 0.640302 | 1.1:+180967 | MS.gene27108:CDS |
GAATTGCCTTCTAATACACA+AGG | 0.641086 | 1.1:+174093 | MS.gene27108:CDS |
CTGGTGGGCAAGGGTCGCTG+AGG | 0.641101 | 1.1:-179200 | None:intergenic |
ACAGCACGGAAGATATCTGT+AGG | 0.645362 | 1.1:-180697 | None:intergenic |
TCAGCTAAAACAGATGACAA+TGG | 0.645638 | 1.1:-176756 | None:intergenic |
TGTGTGAAATTTGCCCAACA+CGG | 0.647094 | 1.1:-172759 | None:intergenic |
TCAATCTGACTACCGCTGGT+GGG | 0.647138 | 1.1:-179215 | None:intergenic |
GATGTAAGTAAGCTGCTCGA+AGG | 0.650206 | 1.1:+180954 | MS.gene27108:CDS |
AGAGATACCGCGGAGATGAG+CGG | 0.652439 | 1.1:+177089 | MS.gene27108:CDS |
ATTGGCTCTAGACCAAACAA+TGG | 0.655176 | 1.1:+176549 | MS.gene27108:CDS |
TCTGTAGCAGAGAATAGTGG+TGG | 0.656147 | 1.1:-179536 | None:intergenic |
CAGCGGTAGTCAGATTGATG+TGG | 0.657434 | 1.1:+179220 | MS.gene27108:CDS |
GGAACGGAAACAGGGCAGGG+TGG | 0.658322 | 1.1:+179638 | MS.gene27108:CDS |
AGAAAGCCCACAGATGAACA+TGG | 0.659366 | 1.1:+179562 | MS.gene27108:CDS |
CATGATACAAGCTCTCGGAG+GGG | 0.659991 | 1.1:+179700 | MS.gene27108:CDS |
ACTGGAACGGAAACAGGGCA+GGG | 0.660931 | 1.1:+179635 | MS.gene27108:CDS |
GCAGGACGCATGGAGCGAGA+GGG | 0.662033 | 1.1:+174990 | MS.gene27108:CDS |
CTAGACCAAACAATGGGGAA+GGG | 0.662121 | 1.1:+176556 | MS.gene27108:CDS |
TCACACCTTAGAAACTCTGT+TGG | 0.665440 | 1.1:+176786 | MS.gene27108:CDS |
CCCATGATACAAGCTCTCGG+AGG | 0.668225 | 1.1:+179698 | MS.gene27108:CDS |
CCCACGTCCGCTCATCTCCG+CGG | 0.669954 | 1.1:-177096 | None:intergenic |
GACAATGGAGCTGAATCGGG+TGG | 0.672692 | 1.1:-176741 | None:intergenic |
GCAACCAACTGAGGATACAC+CGG | 0.678404 | 1.1:-177123 | None:intergenic |
ACTGACCGAAGAAGTTTGTG+CGG | 0.679232 | 1.1:-173059 | None:intergenic |
GCTAGTGCAAATAGTAACCG+AGG | 0.687450 | 1.1:+172605 | MS.gene27108:CDS |
TCTGCAGCAGAGAATAGTGG+TGG | 0.699613 | 1.1:-179731 | None:intergenic |
GCACGGAAGATATCTGTAGG+TGG | 0.700840 | 1.1:-180694 | None:intergenic |
TCACAACCAGACCCAAACTG+AGG | 0.703188 | 1.1:+177247 | MS.gene27108:intron |
AATATATTGCAAACACTCGG+GGG | 0.705829 | 1.1:+179140 | MS.gene27108:CDS |
ATTTGCCCAACACGGCTACG+AGG | 0.706337 | 1.1:-172751 | None:intergenic |
TTCTGTACGATGCAATACAG+TGG | 0.709351 | 1.1:-174139 | None:intergenic |
GTGGAGATACTGAATCCAGA+TGG | 0.710982 | 1.1:-176708 | None:intergenic |
AAATGAACAGAGAGATACCG+CGG | 0.715935 | 1.1:+177079 | MS.gene27108:CDS |
AATTGCCTTCTAATACACAA+GGG | 0.735513 | 1.1:+174094 | MS.gene27108:CDS |
TGGCTCTAGACCAAACAATG+GGG | 0.735668 | 1.1:+176551 | MS.gene27108:CDS |
AGACACACACTCCTGCTACG+GGG | 0.754610 | 1.1:+172567 | MS.gene27108:CDS |
GAGCACTTCCAACACCAACG+GGG | 0.778341 | 1.1:-176400 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 172052 | 181001 | 172052 | ID=MS.gene27108 |
chr1.1 | mRNA | 172052 | 181001 | 172052 | ID=MS.gene27108.t1;Parent=MS.gene27108 |
chr1.1 | exon | 172052 | 172183 | 172052 | ID=MS.gene27108.t1.exon1;Parent=MS.gene27108.t1 |
chr1.1 | CDS | 172052 | 172183 | 172052 | ID=cds.MS.gene27108.t1;Parent=MS.gene27108.t1 |
chr1.1 | exon | 172301 | 172418 | 172301 | ID=MS.gene27108.t1.exon2;Parent=MS.gene27108.t1 |
chr1.1 | CDS | 172301 | 172418 | 172301 | ID=cds.MS.gene27108.t1;Parent=MS.gene27108.t1 |
chr1.1 | exon | 172519 | 172626 | 172519 | ID=MS.gene27108.t1.exon3;Parent=MS.gene27108.t1 |
chr1.1 | CDS | 172519 | 172626 | 172519 | ID=cds.MS.gene27108.t1;Parent=MS.gene27108.t1 |
chr1.1 | exon | 172728 | 172849 | 172728 | ID=MS.gene27108.t1.exon4;Parent=MS.gene27108.t1 |
chr1.1 | CDS | 172728 | 172849 | 172728 | ID=cds.MS.gene27108.t1;Parent=MS.gene27108.t1 |
chr1.1 | exon | 172995 | 173075 | 172995 | ID=MS.gene27108.t1.exon5;Parent=MS.gene27108.t1 |
chr1.1 | CDS | 172995 | 173075 | 172995 | ID=cds.MS.gene27108.t1;Parent=MS.gene27108.t1 |
chr1.1 | exon | 173674 | 173808 | 173674 | ID=MS.gene27108.t1.exon6;Parent=MS.gene27108.t1 |
chr1.1 | CDS | 173674 | 173808 | 173674 | ID=cds.MS.gene27108.t1;Parent=MS.gene27108.t1 |
chr1.1 | exon | 173903 | 173972 | 173903 | ID=MS.gene27108.t1.exon7;Parent=MS.gene27108.t1 |
chr1.1 | CDS | 173903 | 173972 | 173903 | ID=cds.MS.gene27108.t1;Parent=MS.gene27108.t1 |
chr1.1 | exon | 174046 | 174197 | 174046 | ID=MS.gene27108.t1.exon8;Parent=MS.gene27108.t1 |
chr1.1 | CDS | 174046 | 174197 | 174046 | ID=cds.MS.gene27108.t1;Parent=MS.gene27108.t1 |
chr1.1 | exon | 174984 | 175148 | 174984 | ID=MS.gene27108.t1.exon9;Parent=MS.gene27108.t1 |
chr1.1 | CDS | 174984 | 175148 | 174984 | ID=cds.MS.gene27108.t1;Parent=MS.gene27108.t1 |
chr1.1 | exon | 175230 | 175301 | 175230 | ID=MS.gene27108.t1.exon10;Parent=MS.gene27108.t1 |
chr1.1 | CDS | 175230 | 175301 | 175230 | ID=cds.MS.gene27108.t1;Parent=MS.gene27108.t1 |
chr1.1 | exon | 176332 | 176452 | 176332 | ID=MS.gene27108.t1.exon11;Parent=MS.gene27108.t1 |
chr1.1 | CDS | 176332 | 176452 | 176332 | ID=cds.MS.gene27108.t1;Parent=MS.gene27108.t1 |
chr1.1 | exon | 176520 | 176840 | 176520 | ID=MS.gene27108.t1.exon12;Parent=MS.gene27108.t1 |
chr1.1 | CDS | 176520 | 176840 | 176520 | ID=cds.MS.gene27108.t1;Parent=MS.gene27108.t1 |
chr1.1 | exon | 177018 | 177169 | 177018 | ID=MS.gene27108.t1.exon13;Parent=MS.gene27108.t1 |
chr1.1 | CDS | 177018 | 177169 | 177018 | ID=cds.MS.gene27108.t1;Parent=MS.gene27108.t1 |
chr1.1 | exon | 177257 | 177484 | 177257 | ID=MS.gene27108.t1.exon14;Parent=MS.gene27108.t1 |
chr1.1 | CDS | 177257 | 177484 | 177257 | ID=cds.MS.gene27108.t1;Parent=MS.gene27108.t1 |
chr1.1 | exon | 179047 | 179808 | 179047 | ID=MS.gene27108.t1.exon15;Parent=MS.gene27108.t1 |
chr1.1 | CDS | 179047 | 179808 | 179047 | ID=cds.MS.gene27108.t1;Parent=MS.gene27108.t1 |
chr1.1 | exon | 180652 | 180807 | 180652 | ID=MS.gene27108.t1.exon16;Parent=MS.gene27108.t1 |
chr1.1 | CDS | 180652 | 180807 | 180652 | ID=cds.MS.gene27108.t1;Parent=MS.gene27108.t1 |
chr1.1 | exon | 180930 | 181001 | 180930 | ID=MS.gene27108.t1.exon17;Parent=MS.gene27108.t1 |
chr1.1 | CDS | 180930 | 181001 | 180930 | ID=cds.MS.gene27108.t1;Parent=MS.gene27108.t1 |
Gene Sequence |
Protein sequence |