AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene27346

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27346.t1 MTR_1g021925 97.391 345 9 0 1 345 39 383 0.0 701
MS.gene27346.t1 MTR_4g069140 62.691 327 121 1 3 329 41 366 9.84e-154 436
MS.gene27346.t1 MTR_1g052685 35.931 231 147 1 60 289 84 314 6.01e-46 161
MS.gene27346.t1 MTR_7g092280 32.584 267 166 3 59 311 83 349 4.46e-42 150
MS.gene27346.t1 MTR_2g097980 36.199 221 125 3 59 279 83 287 9.99e-39 141
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27346.t1 AT1G75020 65.549 328 113 0 1 328 38 365 8.88e-168 473
MS.gene27346.t1 AT1G75020 65.549 328 113 0 1 328 38 365 8.88e-168 473
MS.gene27346.t1 AT3G18850 62.952 332 122 1 1 331 33 364 1.10e-159 452
MS.gene27346.t1 AT3G18850 62.952 332 122 1 1 331 33 364 1.10e-159 452
MS.gene27346.t1 AT3G18850 62.952 332 122 1 1 331 33 364 1.10e-159 452
MS.gene27346.t1 AT3G18850 62.952 332 122 1 1 331 33 364 1.10e-159 452
MS.gene27346.t1 AT3G18850 64.198 324 115 1 9 331 18 341 3.68e-159 449
MS.gene27346.t1 AT3G18850 57.798 218 91 1 115 331 16 233 2.18e-92 276
MS.gene27346.t1 AT3G57650 33.969 262 172 1 59 319 82 343 8.05e-47 163
MS.gene27346.t1 AT1G51260 30.667 300 190 6 32 327 53 338 7.35e-39 142

Find 58 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGCTTTAGTTTCAGAAAT+TGG 0.158348 1.2:+2772074 None:intergenic
ACAAAATCTTTCAACATTTC+AGG 0.190346 1.2:-2773389 MS.gene27346:CDS
AGGATCCGAAAGATCCTTTA+TGG 0.230304 1.2:-2773369 MS.gene27346:CDS
CAGAAGTCCACTTGCATATT+CGG 0.261346 1.2:-2772118 MS.gene27346:CDS
AAAGCAATTGGTCCTTGATT+TGG 0.267935 1.2:+2772030 None:intergenic
GCATGTACATAATCTGTTAA+AGG 0.268484 1.2:+2771798 None:intergenic
CTGAAACTAAAGCTGCTTCT+TGG 0.278746 1.2:-2772067 MS.gene27346:CDS
AAGGCAGTATCATTCTTCTT+TGG 0.293370 1.2:-2773703 MS.gene27346:CDS
TGGTTGGGGATTTCAGATTC+TGG 0.302482 1.2:-2773461 MS.gene27346:CDS
CTTTCGCCGCTTGCAGTTGT+AGG 0.315648 1.2:-2773757 MS.gene27346:CDS
CCAATTGCTTTCTGATTTCA+AGG 0.330496 1.2:-2772018 MS.gene27346:CDS
TAAAGCTGCTTCTTGGCTAA+TGG 0.348528 1.2:-2772060 MS.gene27346:CDS
TCATTGCAGTGGAGAGGAAA+TGG 0.367397 1.2:-2773435 MS.gene27346:CDS
GTTTCATTAAGCTGCTCTTA+AGG 0.367606 1.2:+2773494 None:intergenic
CTTTCTGATTTCAAGGTTCA+AGG 0.386029 1.2:-2772011 MS.gene27346:CDS
TATCATTCTTCTTTGGACTT+TGG 0.386228 1.2:-2773696 MS.gene27346:CDS
TACGTATAATCGGTTCCTTC+GGG 0.405431 1.2:+2773334 None:intergenic
ATCACAGAACTGAGGTTGAT+TGG 0.411546 1.2:-2773573 MS.gene27346:CDS
GATAGCCATAAAGGATCTTT+CGG 0.432489 1.2:+2773364 None:intergenic
GTACGTATAATCGGTTCCTT+CGG 0.443486 1.2:+2773333 None:intergenic
CTATCACGGTAAAAGTGAAT+AGG 0.446000 1.2:+2771940 None:intergenic
CCTTGAAATCAGAAAGCAAT+TGG 0.447220 1.2:+2772018 None:intergenic
ATCAACCTCAGTTCTGTGAT+TGG 0.449343 1.2:+2773576 None:intergenic
GGAAACTTTACAAGGCTCAT+TGG 0.449806 1.2:-2772966 MS.gene27346:CDS
GTGGGATCTTGCTCTTAGAA+AGG 0.458545 1.2:-2773542 MS.gene27346:CDS
AAAGGGGTTTCACACTTGCT+TGG 0.459653 1.2:-2772987 MS.gene27346:CDS
TTGGACTTTGGTTATCTATG+TGG 0.460047 1.2:-2773684 MS.gene27346:CDS
TTCGAGGTAGTACGTATAAT+CGG 0.463252 1.2:+2773324 None:intergenic
GAAATTGGAATCTCCTCTAC+AGG 0.473130 1.2:+2772089 None:intergenic
TGGGATCTTGCTCTTAGAAA+GGG 0.490923 1.2:-2773541 MS.gene27346:CDS
TTATCAGTATTCGTTATAGT+AGG 0.491260 1.2:-2773726 MS.gene27346:CDS
CGCTTGCAGTTGTAGGATTG+CGG 0.503380 1.2:-2773750 MS.gene27346:CDS
GATTCTGGAATTCATTGCAG+TGG 0.510533 1.2:-2773446 MS.gene27346:CDS
TTACAAGGCTCATTGGATGC+AGG 0.514141 1.2:-2772959 MS.gene27346:intron
CATTGCAGTGGAGAGGAAAT+GGG 0.521317 1.2:-2773434 MS.gene27346:CDS
GGTTGATTGGATGTACTTGT+GGG 0.523971 1.2:-2773560 MS.gene27346:CDS
CGCAATCCTACAACTGCAAG+CGG 0.528807 1.2:+2773751 None:intergenic
ACTTGCTTGGAAACTTTACA+AGG 0.535788 1.2:-2772974 MS.gene27346:CDS
AATGGATGCATTCCAAATCA+AGG 0.541765 1.2:-2772042 MS.gene27346:CDS
GCTCTTAGAAAGGGAAGACT+AGG 0.543581 1.2:-2773532 MS.gene27346:CDS
CCCTAACCAACAAAATGAAG+TGG 0.545633 1.2:-2771982 MS.gene27346:CDS
ATATGCAAGTGGACTTCTGA+AGG 0.550458 1.2:+2772122 None:intergenic
AGTAATACATTTGTCAGCAC+AGG 0.552689 1.2:+2773019 None:intergenic
CAGTATTCGTTATAGTAGGA+AGG 0.557462 1.2:-2773722 MS.gene27346:CDS
TGGGGATAGTATTCCGATGA+GGG 0.559784 1.2:-2773617 MS.gene27346:CDS
AAAACATTGTCTAGAAAGGA+AGG 0.565471 1.2:+2772155 None:intergenic
AGGTTGATTGGATGTACTTG+TGG 0.569937 1.2:-2773561 MS.gene27346:CDS
AGTAACACACGTTCCCTCAT+CGG 0.578657 1.2:+2773604 None:intergenic
CAAGGTAAAATAAGTAAACA+AGG 0.586845 1.2:+2771905 None:intergenic
ATCGGGTTCAAGTTATATGT+AGG 0.586979 1.2:-2771873 MS.gene27346:CDS
TGGAATTCATTGCAGTGGAG+AGG 0.600003 1.2:-2773441 MS.gene27346:CDS
CTGGGGATAGTATTCCGATG+AGG 0.613140 1.2:-2773618 MS.gene27346:CDS
GAACCCGATGTGAGAAAACA+AGG 0.629551 1.2:+2771887 None:intergenic
TATTCGGCGTATTCCTGTAG+AGG 0.633768 1.2:-2772102 MS.gene27346:CDS
GGCGGTAAAACAAACTATCA+CGG 0.635114 1.2:+2771926 None:intergenic
GAATACGCCGAATATGCAAG+TGG 0.679908 1.2:+2772111 None:intergenic
TATCGCCAATCACAGAACTG+AGG 0.748204 1.2:-2773581 MS.gene27346:CDS
GGTAAAATAAGTAAACAAGG+CGG 0.784862 1.2:+2771908 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTAATATTTGATACT+CGG - chr1.2:2772622-2772641 MS.gene27346:intron 10.0%
!! ATAATATATTGTCTATTTGT+CGG + chr1.2:2772404-2772423 None:intergenic 15.0%
!! ATGTCAAATAAAATAATTTG+TGG + chr1.2:2772317-2772336 None:intergenic 15.0%
!! ATATGGAATATACACAAATT+CGG + chr1.2:2773149-2773168 None:intergenic 20.0%
!!! TTTATCTTTTCGAATAGAAA+GGG + chr1.2:2771878-2771897 None:intergenic 20.0%
! ACAAAATCTTTCAACATTTC+AGG - chr1.2:2772147-2772166 MS.gene27346:CDS 25.0%
! AGTCAAAATATTGCTCATAA+TGG + chr1.2:2772351-2772370 None:intergenic 25.0%
! CAAGGTAAAATAAGTAAACA+AGG + chr1.2:2773634-2773653 None:intergenic 25.0%
! CAATATATTATTCACTTCAG+TGG - chr1.2:2772413-2772432 MS.gene27346:intron 25.0%
! GTATTACTTCCAAAAACAAA+GGG - chr1.2:2772532-2772551 MS.gene27346:intron 25.0%
! GTCAATTCATAATGACTTTA+TGG - chr1.2:2772644-2772663 MS.gene27346:intron 25.0%
! TATTACTTCCAAAAACAAAG+GGG - chr1.2:2772533-2772552 MS.gene27346:intron 25.0%
! TGTATTACTTCCAAAAACAA+AGG - chr1.2:2772531-2772550 MS.gene27346:intron 25.0%
! TTACATTATGTGATCGAAAT+CGG - chr1.2:2772930-2772949 MS.gene27346:intron 25.0%
! TTAGAAAAGAAAAGAGACAA+GGG + chr1.2:2773275-2773294 None:intergenic 25.0%
! TTATCAGTATTCGTTATAGT+AGG - chr1.2:2771810-2771829 MS.gene27346:CDS 25.0%
! TTTAGAAAAGAAAAGAGACA+AGG + chr1.2:2773276-2773295 None:intergenic 25.0%
!! AAAACTAAAGTTGTCTTTTC+TGG - chr1.2:2771899-2771918 MS.gene27346:CDS 25.0%
!! AAACTAAAGTTGTCTTTTCT+GGG - chr1.2:2771900-2771919 MS.gene27346:CDS 25.0%
!! GTTTATCTTTTCGAATAGAA+AGG + chr1.2:2771879-2771898 None:intergenic 25.0%
!!! TGTTCAACAATATTTTGACA+TGG - chr1.2:2773224-2773243 MS.gene27346:intron 25.0%
!!! TTAATGAAACTACCGATTTT+TGG - chr1.2:2772055-2772074 MS.gene27346:CDS 25.0%
AAAACATTGTCTAGAAAGGA+AGG + chr1.2:2773384-2773403 None:intergenic 30.0%
ACCAAAAACATTGTCTAGAA+AGG + chr1.2:2773388-2773407 None:intergenic 30.0%
AGAAACTGCAAAGATACATT+TGG + chr1.2:2772796-2772815 None:intergenic 30.0%
ATATTCCATATCATTCCCTA+GGG - chr1.2:2773158-2773177 MS.gene27346:intron 30.0%
GCATGTACATAATCTGTTAA+AGG + chr1.2:2773741-2773760 None:intergenic 30.0%
GGTAAAATAAGTAAACAAGG+CGG + chr1.2:2773631-2773650 None:intergenic 30.0%
TAGAAAAGAAAAGAGACAAG+GGG + chr1.2:2773274-2773293 None:intergenic 30.0%
TATATTCCATATCATTCCCT+AGG - chr1.2:2773157-2773176 MS.gene27346:intron 30.0%
TATCATTCTTCTTTGGACTT+TGG - chr1.2:2771840-2771859 MS.gene27346:CDS 30.0%
! AACTAAAGTTGTCTTTTCTG+GGG - chr1.2:2771901-2771920 MS.gene27346:CDS 30.0%
! AGAATTCCACTTCATTTTGT+TGG + chr1.2:2773563-2773582 None:intergenic 30.0%
! TCCTTTCTAGACAATGTTTT+TGG - chr1.2:2773384-2773403 MS.gene27346:CDS 30.0%
!!! TTTACCTTGTTTTCTCACAT+CGG - chr1.2:2773645-2773664 MS.gene27346:CDS 30.0%
AAAGCAATTGGTCCTTGATT+TGG + chr1.2:2773509-2773528 None:intergenic 35.0%
AAGGCAGTATCATTCTTCTT+TGG - chr1.2:2771833-2771852 MS.gene27346:CDS 35.0%
AATGGATGCATTCCAAATCA+AGG - chr1.2:2773494-2773513 MS.gene27346:CDS 35.0%
ACTTGCTTGGAAACTTTACA+AGG - chr1.2:2772562-2772581 MS.gene27346:intron 35.0%
AGTAATACATTTGTCAGCAC+AGG + chr1.2:2772520-2772539 None:intergenic 35.0%
CAGTATTCGTTATAGTAGGA+AGG - chr1.2:2771814-2771833 MS.gene27346:CDS 35.0%
CCAATTGCTTTCTGATTTCA+AGG - chr1.2:2773518-2773537 MS.gene27346:CDS 35.0%
CCTTGAAATCAGAAAGCAAT+TGG + chr1.2:2773521-2773540 None:intergenic 35.0%
CTATCACGGTAAAAGTGAAT+AGG + chr1.2:2773599-2773618 None:intergenic 35.0%
CTTTCTGATTTCAAGGTTCA+AGG - chr1.2:2773525-2773544 MS.gene27346:CDS 35.0%
GAAGGTTCAAATTTCAAGCT+CGG - chr1.2:2773005-2773024 MS.gene27346:CDS 35.0%
GATAGCCATAAAGGATCTTT+CGG + chr1.2:2772175-2772194 None:intergenic 35.0%
GGAAAAAGAGATAGCCATAA+AGG + chr1.2:2772184-2772203 None:intergenic 35.0%
GTTTCATTAAGCTGCTCTTA+AGG + chr1.2:2772045-2772064 None:intergenic 35.0%
TACAGGGTAAATTCAAAGCA+AGG + chr1.2:2772856-2772875 None:intergenic 35.0%
TCAAAATCTGCATTCAAACC+TGG - chr1.2:2773053-2773072 MS.gene27346:CDS 35.0%
TCTCTGTTACCAAAATGCAA+TGG - chr1.2:2772690-2772709 MS.gene27346:intron 35.0%
TGAAATCCCCAACCAAAAAT+CGG + chr1.2:2772070-2772089 None:intergenic 35.0%
TTCAGTTCCAAACGTATGTT+CGG - chr1.2:2772750-2772769 MS.gene27346:intron 35.0%
TTCGAGGTAGTACGTATAAT+CGG + chr1.2:2772215-2772234 None:intergenic 35.0%
TTGGACTTTGGTTATCTATG+TGG - chr1.2:2771852-2771871 MS.gene27346:CDS 35.0%
! AAACCAAGTTTGCTTTCACT+AGG - chr1.2:2773201-2773220 MS.gene27346:intron 35.0%
! ATCGGGTTCAAGTTATATGT+AGG - chr1.2:2773663-2773682 MS.gene27346:CDS 35.0%
! GCAGCTTTAGTTTCAGAAAT+TGG + chr1.2:2773465-2773484 None:intergenic 35.0%
! TTACCAAAATGCAATGGACT+TGG - chr1.2:2772696-2772715 MS.gene27346:intron 35.0%
! TTGCTTTGAATTTACCCTGT+AGG - chr1.2:2772855-2772874 MS.gene27346:intron 35.0%
!! CAAAAATTTGCTGCTGAAGT+TGG - chr1.2:2772490-2772509 MS.gene27346:intron 35.0%
!! CATTTTGTTGGTTAGGGAAA+TGG + chr1.2:2773551-2773570 None:intergenic 35.0%
!! CCACTTCATTTTGTTGGTTA+GGG + chr1.2:2773557-2773576 None:intergenic 35.0%
!! TCCACTTCATTTTGTTGGTT+AGG + chr1.2:2773558-2773577 None:intergenic 35.0%
!!! AAACTACCGATTTTTGGTTG+GGG - chr1.2:2772061-2772080 MS.gene27346:CDS 35.0%
!!! CTCTGTGTTTTTTGCTTTAG+GGG - chr1.2:2772881-2772900 MS.gene27346:intron 35.0%
!!! GAAACTACCGATTTTTGGTT+GGG - chr1.2:2772060-2772079 MS.gene27346:CDS 35.0%
!!! GCTCTGTGTTTTTTGCTTTA+GGG - chr1.2:2772880-2772899 MS.gene27346:intron 35.0%
!!! TGAAACTACCGATTTTTGGT+TGG - chr1.2:2772059-2772078 MS.gene27346:CDS 35.0%
!!! TGCTCTGTGTTTTTTGCTTT+AGG - chr1.2:2772879-2772898 MS.gene27346:intron 35.0%
!!! TTACCTTGTTTTCTCACATC+GGG - chr1.2:2773646-2773665 MS.gene27346:CDS 35.0%
AAAAGAGACAAGGGGAAAGT+TGG + chr1.2:2773266-2773285 None:intergenic 40.0%
ACACCTAGTGAAAGCAAACT+TGG + chr1.2:2773207-2773226 None:intergenic 40.0%
AGGATCCGAAAGATCCTTTA+TGG - chr1.2:2772167-2772186 MS.gene27346:CDS 40.0%
ATCAACCTCAGTTCTGTGAT+TGG + chr1.2:2771963-2771982 None:intergenic 40.0%
CAGAAGTCCACTTGCATATT+CGG - chr1.2:2773418-2773437 MS.gene27346:CDS 40.0%
CATGCATCCAGTTAGCATAT+TGG + chr1.2:2773105-2773124 None:intergenic 40.0%
CCCTAACCAACAAAATGAAG+TGG - chr1.2:2773554-2773573 MS.gene27346:CDS 40.0%
CTGAAACTAAAGCTGCTTCT+TGG - chr1.2:2773469-2773488 MS.gene27346:CDS 40.0%
GAAATTGGAATCTCCTCTAC+AGG + chr1.2:2773450-2773469 None:intergenic 40.0%
GGAAACTTTACAAGGCTCAT+TGG - chr1.2:2772570-2772589 MS.gene27346:intron 40.0%
GGCGGTAAAACAAACTATCA+CGG + chr1.2:2773613-2773632 None:intergenic 40.0%
GGTCGTTGTTCGATCAAAAT+CGG - chr1.2:2772983-2773002 MS.gene27346:CDS 40.0%
GGTTGATTGGATGTACTTGT+GGG - chr1.2:2771976-2771995 MS.gene27346:CDS 40.0%
GTTGTTCGATCAAAATCGGA+AGG - chr1.2:2772987-2773006 MS.gene27346:CDS 40.0%
TAAAGCTGCTTCTTGGCTAA+TGG - chr1.2:2773476-2773495 MS.gene27346:CDS 40.0%
TGGGATCTTGCTCTTAGAAA+GGG - chr1.2:2771995-2772014 MS.gene27346:CDS 40.0%
TTCGGATCCAAACGTATGTT+CGG - chr1.2:2772768-2772787 MS.gene27346:intron 40.0%
TTTGGATCCGAACATACGTT+TGG + chr1.2:2772760-2772779 None:intergenic 40.0%
! AAAAACACAGAGCATCCTAC+AGG + chr1.2:2772873-2772892 None:intergenic 40.0%
! AAAACACAGAGCATCCTACA+GGG + chr1.2:2772872-2772891 None:intergenic 40.0%
! AAGCCAAGTCCATTGCATTT+TGG + chr1.2:2772702-2772721 None:intergenic 40.0%
! AGGTTGATTGGATGTACTTG+TGG - chr1.2:2771975-2771994 MS.gene27346:CDS 40.0%
! ATATGCAAGTGGACTTCTGA+AGG + chr1.2:2773417-2773436 None:intergenic 40.0%
! ATCACAGAACTGAGGTTGAT+TGG - chr1.2:2771963-2771982 MS.gene27346:CDS 40.0%
! CTTTAGGGGTGGATTTCTTT+AGG - chr1.2:2772895-2772914 MS.gene27346:intron 40.0%
! GTACGTATAATCGGTTCCTT+CGG + chr1.2:2772206-2772225 None:intergenic 40.0%
! TAACACGATGCGCGTATTTT+AGG + chr1.2:2772379-2772398 None:intergenic 40.0%
! TACGTATAATCGGTTCCTTC+GGG + chr1.2:2772205-2772224 None:intergenic 40.0%
!! GATTCTGGAATTCATTGCAG+TGG - chr1.2:2772090-2772109 MS.gene27346:CDS 40.0%
!! GATTTTGATCGAACAACGAC+CGG + chr1.2:2772984-2773003 None:intergenic 40.0%
!!! GTGTGAAACCCCTTTGTTTT+TGG + chr1.2:2772544-2772563 None:intergenic 40.0%
!!! TGTGTTTTTTGCTTTAGGGG+TGG - chr1.2:2772884-2772903 MS.gene27346:intron 40.0%
AAAGGGGTTTCACACTTGCT+TGG - chr1.2:2772549-2772568 MS.gene27346:intron 45.0%
AACTAGCATTCTGCTTCCCT+AGG + chr1.2:2773177-2773196 None:intergenic 45.0%
ACGACCACCAATATGCTAAC+TGG - chr1.2:2773095-2773114 MS.gene27346:intron 45.0%
ACTAGCATTCTGCTTCCCTA+GGG + chr1.2:2773176-2773195 None:intergenic 45.0%
AGTAACACACGTTCCCTCAT+CGG + chr1.2:2771935-2771954 None:intergenic 45.0%
CATTGCAGTGGAGAGGAAAT+GGG - chr1.2:2772102-2772121 MS.gene27346:CDS 45.0%
GAACCCGATGTGAGAAAACA+AGG + chr1.2:2773652-2773671 None:intergenic 45.0%
GAATACGCCGAATATGCAAG+TGG + chr1.2:2773428-2773447 None:intergenic 45.0%
GCATCCAGTTAGCATATTGG+TGG + chr1.2:2773102-2773121 None:intergenic 45.0%
GCTCTTAGAAAGGGAAGACT+AGG - chr1.2:2772004-2772023 MS.gene27346:CDS 45.0%
GTCGTTGGATCGAGATCAAA+CGG + chr1.2:2773080-2773099 None:intergenic 45.0%
GTGGGATCTTGCTCTTAGAA+AGG - chr1.2:2771994-2772013 MS.gene27346:CDS 45.0%
TATCGCCAATCACAGAACTG+AGG - chr1.2:2771955-2771974 MS.gene27346:CDS 45.0%
TATTCGGCGTATTCCTGTAG+AGG - chr1.2:2773434-2773453 MS.gene27346:CDS 45.0%
TCATTGCAGTGGAGAGGAAA+TGG - chr1.2:2772101-2772120 MS.gene27346:CDS 45.0%
TGCTTCCCTAGGGAATGATA+TGG + chr1.2:2773166-2773185 None:intergenic 45.0%
TGGAATTCATTGCAGTGGAG+AGG - chr1.2:2772095-2772114 MS.gene27346:CDS 45.0%
TGGGGATAGTATTCCGATGA+GGG - chr1.2:2771919-2771938 MS.gene27346:CDS 45.0%
TGGTTGGGGATTTCAGATTC+TGG - chr1.2:2772075-2772094 MS.gene27346:CDS 45.0%
TTACAAGGCTCATTGGATGC+AGG - chr1.2:2772577-2772596 MS.gene27346:intron 45.0%
! GTTAGCATATTGGTGGTCGT+TGG + chr1.2:2773095-2773114 None:intergenic 45.0%
! TGGCTATCTCTTTTTCCCGA+AGG - chr1.2:2772187-2772206 MS.gene27346:CDS 45.0%
!! CAAATATTAAAAAAATTAAA+AGG + chr1.2:2772617-2772636 None:intergenic 5.0%
ACCTCGAATCCTTCTCAGCT+CGG - chr1.2:2772227-2772246 MS.gene27346:intron 50.0%
AGATGAGATCCGAGCTGAGA+AGG + chr1.2:2772239-2772258 None:intergenic 50.0%
CGCAATCCTACAACTGCAAG+CGG + chr1.2:2771788-2771807 None:intergenic 50.0%
CGCTTGCAGTTGTAGGATTG+CGG - chr1.2:2771786-2771805 MS.gene27346:CDS 50.0%
CTGGGGATAGTATTCCGATG+AGG - chr1.2:2771918-2771937 MS.gene27346:CDS 50.0%
ATTCCACGCATTCAGCACGC+CGG - chr1.2:2772962-2772981 MS.gene27346:CDS 55.0%
CTTTCGCCGCTTGCAGTTGT+AGG - chr1.2:2771779-2771798 MS.gene27346:CDS 55.0%
GGATCGAGATCAAACGGTCC+AGG + chr1.2:2773074-2773093 None:intergenic 55.0%
TCCGAGCTGAGAAGGATTCG+AGG + chr1.2:2772231-2772250 None:intergenic 55.0%
CGACCGGCGTGCTGAATGCG+TGG + chr1.2:2772968-2772987 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 2771764 2773794 2771764 ID=MS.gene27346
chr1.2 mRNA 2771764 2773794 2771764 ID=MS.gene27346.t1;Parent=MS.gene27346
chr1.2 exon 2773337 2773794 2773337 ID=MS.gene27346.t1.exon1;Parent=MS.gene27346.t1
chr1.2 CDS 2773337 2773794 2773337 ID=cds.MS.gene27346.t1;Parent=MS.gene27346.t1
chr1.2 exon 2772960 2773090 2772960 ID=MS.gene27346.t1.exon2;Parent=MS.gene27346.t1
chr1.2 CDS 2772960 2773090 2772960 ID=cds.MS.gene27346.t1;Parent=MS.gene27346.t1
chr1.2 exon 2771764 2772212 2771764 ID=MS.gene27346.t1.exon3;Parent=MS.gene27346.t1
chr1.2 CDS 2771764 2772212 2771764 ID=cds.MS.gene27346.t1;Parent=MS.gene27346.t1
Gene Sequence

>MS.gene27346

ATGTGTATAGTATATCTTTCGCCGCTTGCAGTTGTAGGATTGCGGCTTATCAGTATTCGTTATAGTAGGAAGGCAGTATCATTCTTCTTTGGACTTTGGTTATCTATGTGGCCCTTTCTATTCGAAAAGATAAACAAAACTAAAGTTGTCTTTTCTGGGGATAGTATTCCGATGAGGGAACGTGTGTTACTTATCGCCAATCACAGAACTGAGGTTGATTGGATGTACTTGTGGGATCTTGCTCTTAGAAAGGGAAGACTAGGATTTATAAAATATATCCTTAAGAGCAGCTTAATGAAACTACCGATTTTTGGTTGGGGATTTCAGATTCTGGAATTCATTGCAGTGGAGAGGAAATGGGAGATAGATGAGCAAATATTGCAACAAAATCTTTCAACATTTCAGGATCCGAAAGATCCTTTATGGCTATCTCTTTTTCCCGAAGGAACCGATTATACGTACTACCTCGAATCCTTCTCAGCTCGGATCTCATCTTTTCATTTCTAAGTGTTTTTATTATCATTGATAATGTATTAAATTCATTTTAATTCCACAAATTATTTTATTTGACATTTTGTTTGTATCCATTATGAGCAATATTTTGACTAGCTTCCTAAAATACGCGCATCGTGTTATACCGACAAATAGACAATATATTATTCACTTCAGTGGCACATTTGACATATTATTTGCTTTTTATGCAGTGAACAGAAGTGTAAAAGTAGTCAAAAATTTGCTGCTGAAGTTGGACTTCCTGTGCTGACAAATGTATTACTTCCAAAAACAAAGGGGTTTCACACTTGCTTGGAAACTTTACAAGGCTCATTGGATGCAGGTTTGTTTTATAATTCCTTTTAATTTTTTTAATATTTGATACTCGGTCAATTCATAATGACTTTATGGTAGATATTTATGAAGTTATGCAATCTCTGTTACCAAAATGCAATGGACTTGGCTTTTGAAAATTATGATAAGTATGATTGAATTTCAGTTCCAAACGTATGTTCGGATCCAAACGTATGTTCGGATCCAAATGTATCTTTGCAGTTTCTCAATTGTAAACAAGCATACAAGTACTTCACTTTTTCTCCTTGCTTTGAATTTACCCTGTAGGATGCTCTGTGTTTTTTGCTTTAGGGGTGGATTTCTTTAGGTGTACTTATAGCTTACATTATGTGATCGAAATCGGCAGTAAGAAATTCCACGCATTCAGCACGCCGGTCGTTGTTCGATCAAAATCGGAAGGTTCAAATTTCAAGCTCGGCATTTTAATTTGAAAATAAAAAAAATCAAAATCTGCATTCAAACCTGGACCGTTTGATCTCGATCCAACGACCACCAATATGCTAACTGGATGCATGTAATTACTTTCTGCAGTCAATCCGAATTTGTGTATATTCCATATCATTCCCTAGGGAAGCAGAATGCTAGTTCACAAAACCAAGTTTGCTTTCACTAGGTGTTCAACAATATTTTGACATGGCAGTTTACATAATGTTCCAACTTTCCCCTTGTCTCTTTTCTTTTCTAAATTTGTTCAACGTTTAAAGTATGTTAAACTTTATCTCTCAATCACGTGCAGTATATGACGTGACAATTGCATACAAGAATCAATGTCCTTCCTTTCTAGACAATGTTTTTGGTCTTGATCCTTCAGAAGTCCACTTGCATATTCGGCGTATTCCTGTAGAGGAGATTCCAATTTCTGAAACTAAAGCTGCTTCTTGGCTAATGGATGCATTCCAAATCAAGGACCAATTGCTTTCTGATTTCAAGGTTCAAGGCCATTTCCCTAACCAACAAAATGAAGTGGAATTCTCGACATTCAAGTGCCTATTCACTTTTACCGTGATAGTTTGTTTTACCGCCTTGTTTACTTATTTTACCTTGTTTTCTCACATCGGGTTCAAGTTATATGTAGGTCTATCTTGTGCATATCTTTCTATTGCAACGCGCTACAAAATTCAATTGATGCCTTTAACAGATTATGTACATGCATTCTATAACAGCAAGAAACAAAAGAATGCATAG
Protein sequence

>MS.gene27346.t1

MCIVYLSPLAVVGLRLISIRYSRKAVSFFFGLWLSMWPFLFEKINKTKVVFSGDSIPMRERVLLIANHRTEVDWMYLWDLALRKGRLGFIKYILKSSLMKLPIFGWGFQILEFIAVERKWEIDEQILQQNLSTFQDPKDPLWLSLFPEGTDYTEQKCKSSQKFAAEVGLPVLTNVLLPKTKGFHTCLETLQGSLDAVYDVTIAYKNQCPSFLDNVFGLDPSEVHLHIRRIPVEEIPISETKAASWLMDAFQIKDQLLSDFKVQGHFPNQQNEVEFSTFKCLFTFTVIVCFTALFTYFTLFSHIGFKLYVGLSCAYLSIATRYKIQLMPLTDYVHAFYNSKKQKNA