Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27426.t1 | RHN52392.1 | 99.4 | 322 | 2 | 0 | 1 | 322 | 1 | 322 | 3.50E-184 | 654.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27426.t1 | A0A2P1GIY9 | 60.6 | 320 | 122 | 3 | 5 | 322 | 6 | 323 | 1.7e-110 | 400.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27426.t1 | A0A396HGB9 | 99.4 | 322 | 2 | 0 | 1 | 322 | 1 | 322 | 2.5e-184 | 654.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052134 | MS.gene27426 | 0.817554 | 3.10E-52 | -1.69E-46 |
| MS.gene052135 | MS.gene27426 | 0.809433 | 1.90E-50 | -1.69E-46 |
| MS.gene054809 | MS.gene27426 | -0.802273 | 6.07E-49 | -1.69E-46 |
| MS.gene054810 | MS.gene27426 | -0.815628 | 8.39E-52 | -1.69E-46 |
| MS.gene055666 | MS.gene27426 | 0.800728 | 1.26E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27426.t1 | MTR_4g072350 | 65.109 | 321 | 111 | 1 | 1 | 321 | 1 | 320 | 2.48e-158 | 445 |
| MS.gene27426.t1 | MTR_4g072320 | 65.217 | 322 | 105 | 3 | 1 | 322 | 1 | 315 | 1.28e-156 | 441 |
| MS.gene27426.t1 | MTR_4g072360 | 63.863 | 321 | 115 | 1 | 1 | 321 | 1 | 320 | 4.55e-154 | 434 |
| MS.gene27426.t1 | MTR_6g073110 | 57.680 | 319 | 134 | 1 | 1 | 319 | 1 | 318 | 8.93e-137 | 390 |
| MS.gene27426.t1 | MTR_0374s0050 | 49.231 | 325 | 151 | 4 | 1 | 321 | 1 | 315 | 2.17e-106 | 313 |
| MS.gene27426.t1 | MTR_3g083130 | 48.765 | 324 | 147 | 7 | 2 | 319 | 3 | 313 | 2.18e-97 | 290 |
| MS.gene27426.t1 | MTR_8g070095 | 45.283 | 318 | 160 | 8 | 11 | 322 | 10 | 319 | 1.25e-88 | 268 |
| MS.gene27426.t1 | MTR_5g097910 | 49.677 | 310 | 137 | 8 | 1 | 301 | 1 | 300 | 9.10e-88 | 266 |
| MS.gene27426.t1 | MTR_5g097940 | 49.677 | 310 | 137 | 8 | 1 | 301 | 1 | 300 | 9.10e-88 | 266 |
| MS.gene27426.t1 | MTR_5g097900 | 49.677 | 310 | 137 | 8 | 1 | 301 | 1 | 300 | 1.07e-87 | 265 |
| MS.gene27426.t1 | MTR_4g036845 | 43.849 | 317 | 170 | 6 | 8 | 322 | 5 | 315 | 2.28e-86 | 262 |
| MS.gene27426.t1 | MTR_8g070115 | 44.375 | 320 | 170 | 4 | 4 | 322 | 3 | 315 | 3.30e-85 | 259 |
| MS.gene27426.t1 | MTR_4g021350 | 44.089 | 313 | 165 | 5 | 11 | 322 | 10 | 313 | 4.22e-77 | 238 |
| MS.gene27426.t1 | MTR_6g072710 | 94.690 | 113 | 6 | 0 | 191 | 303 | 1 | 113 | 2.84e-74 | 224 |
| MS.gene27426.t1 | MTR_4g021350 | 44.912 | 285 | 148 | 4 | 11 | 295 | 10 | 285 | 2.42e-70 | 220 |
| MS.gene27426.t1 | MTR_7g063580 | 41.214 | 313 | 175 | 5 | 11 | 322 | 50 | 354 | 1.08e-69 | 221 |
| MS.gene27426.t1 | MTR_4g021450 | 42.492 | 313 | 159 | 6 | 11 | 321 | 11 | 304 | 5.54e-69 | 217 |
| MS.gene27426.t1 | MTR_7g070500 | 38.141 | 312 | 180 | 6 | 11 | 319 | 17 | 318 | 3.13e-68 | 216 |
| MS.gene27426.t1 | MTR_4g021410 | 41.479 | 311 | 161 | 6 | 11 | 319 | 11 | 302 | 3.08e-67 | 213 |
| MS.gene27426.t1 | MTR_7g070500 | 38.811 | 286 | 165 | 4 | 11 | 296 | 17 | 292 | 8.47e-64 | 204 |
| MS.gene27426.t1 | MTR_4g021410 | 42.652 | 279 | 142 | 5 | 43 | 319 | 3 | 265 | 8.02e-63 | 200 |
| MS.gene27426.t1 | MTR_4g072060 | 39.667 | 300 | 164 | 7 | 9 | 299 | 3 | 294 | 1.20e-58 | 191 |
| MS.gene27426.t1 | MTR_6g072650 | 56.579 | 152 | 44 | 1 | 170 | 321 | 7 | 136 | 1.25e-53 | 172 |
| MS.gene27426.t1 | MTR_4g021450 | 43.210 | 243 | 121 | 4 | 81 | 321 | 1 | 228 | 3.31e-52 | 172 |
| MS.gene27426.t1 | MTR_4g021410 | 41.909 | 241 | 123 | 4 | 81 | 319 | 1 | 226 | 1.76e-49 | 165 |
| MS.gene27426.t1 | MTR_4g021450 | 45.556 | 180 | 93 | 2 | 143 | 321 | 10 | 185 | 3.08e-48 | 160 |
| MS.gene27426.t1 | MTR_6g072705 | 63.265 | 49 | 17 | 1 | 105 | 153 | 38 | 85 | 5.45e-15 | 69.7 |
| MS.gene27426.t1 | MTR_7g114990 | 25.152 | 330 | 174 | 13 | 6 | 290 | 13 | 314 | 2.27e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27426.t1 | AT1G59960 | 46.037 | 328 | 169 | 4 | 1 | 322 | 1 | 326 | 9.05e-107 | 315 |
| MS.gene27426.t1 | AT1G59950 | 48.065 | 310 | 157 | 3 | 15 | 322 | 13 | 320 | 2.76e-98 | 293 |
| MS.gene27426.t1 | AT2G37770 | 46.106 | 321 | 165 | 4 | 3 | 322 | 2 | 315 | 1.91e-92 | 278 |
| MS.gene27426.t1 | AT2G37790 | 46.326 | 313 | 159 | 4 | 11 | 322 | 10 | 314 | 2.20e-92 | 278 |
| MS.gene27426.t1 | AT2G37760 | 45.687 | 313 | 158 | 4 | 11 | 322 | 10 | 311 | 1.64e-87 | 265 |
| MS.gene27426.t1 | AT2G37760 | 45.687 | 313 | 158 | 4 | 11 | 322 | 10 | 311 | 1.64e-87 | 265 |
| MS.gene27426.t1 | AT3G53880 | 45.048 | 313 | 164 | 4 | 11 | 322 | 10 | 315 | 8.80e-86 | 261 |
| MS.gene27426.t1 | AT5G62420 | 42.222 | 315 | 173 | 7 | 11 | 322 | 8 | 316 | 9.28e-86 | 261 |
| MS.gene27426.t1 | AT2G37760 | 46.552 | 290 | 144 | 3 | 11 | 300 | 10 | 288 | 1.56e-83 | 254 |
| MS.gene27426.t1 | AT2G37760 | 46.341 | 287 | 143 | 3 | 11 | 297 | 10 | 285 | 2.78e-82 | 251 |
| MS.gene27426.t1 | AT2G37760 | 46.341 | 287 | 143 | 3 | 11 | 297 | 10 | 285 | 2.78e-82 | 251 |
| MS.gene27426.t1 | AT3G53880 | 44.912 | 285 | 150 | 3 | 11 | 295 | 10 | 287 | 1.75e-78 | 242 |
| MS.gene27426.t1 | AT5G01670 | 37.188 | 320 | 188 | 6 | 3 | 319 | 10 | 319 | 1.90e-74 | 232 |
| MS.gene27426.t1 | AT2G37760 | 46.183 | 262 | 136 | 3 | 62 | 322 | 8 | 265 | 7.02e-71 | 221 |
| MS.gene27426.t1 | AT2G37760 | 46.183 | 262 | 136 | 3 | 62 | 322 | 8 | 265 | 7.02e-71 | 221 |
| MS.gene27426.t1 | AT5G01670 | 34.294 | 347 | 188 | 7 | 3 | 319 | 10 | 346 | 2.01e-68 | 218 |
| MS.gene27426.t1 | AT2G21250 | 37.248 | 298 | 172 | 6 | 8 | 296 | 2 | 293 | 3.73e-63 | 202 |
| MS.gene27426.t1 | AT2G21260 | 36.364 | 308 | 179 | 7 | 8 | 304 | 2 | 303 | 6.25e-63 | 202 |
| MS.gene27426.t1 | AT2G37770 | 49.524 | 210 | 99 | 3 | 3 | 212 | 2 | 204 | 2.64e-62 | 199 |
| MS.gene27426.t1 | AT2G21250 | 36.555 | 238 | 136 | 6 | 8 | 236 | 2 | 233 | 1.12e-45 | 155 |
| MS.gene27426.t1 | AT2G21260 | 34.101 | 217 | 132 | 4 | 92 | 299 | 12 | 226 | 1.07e-37 | 134 |
| MS.gene27426.t1 | AT5G53580 | 24.333 | 300 | 172 | 10 | 21 | 286 | 64 | 342 | 1.70e-14 | 73.9 |
Find 70 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTGCACTTGACCCTATT+TGG | 0.175394 | 6.2:+74631358 | None:intergenic |
| CTGAGATGGGTGTACCAAAT+AGG | 0.266489 | 6.2:-74631372 | MS.gene27426:CDS |
| GTCAGCTCTTGGAGCTTATA+AGG | 0.280650 | 6.2:-74631640 | MS.gene27426:CDS |
| TTACTTCCCTTTGATATAGA+AGG | 0.286868 | 6.2:-74632421 | MS.gene27426:CDS |
| AAAGGGAAGTAAATCTTCTT+TGG | 0.295146 | 6.2:+74632432 | None:intergenic |
| TTTGATTCTGCTTCTGTGTA+TGG | 0.318221 | 6.2:-74633846 | MS.gene27426:CDS |
| CCTGAGTTTAACAACACTTC+TGG | 0.338648 | 6.2:+74633975 | None:intergenic |
| TGGATCTTTATCTGATTCAT+TGG | 0.339555 | 6.2:-74632498 | MS.gene27426:CDS |
| TACAATGTTGTTTAGAAAGC+TGG | 0.350774 | 6.2:-74632533 | MS.gene27426:intron |
| GATATGTGGCTATCTGAAAA+TGG | 0.353884 | 6.2:-74631219 | MS.gene27426:CDS |
| ATGGAAGAGTGTTATAAGTT+AGG | 0.361957 | 6.2:-74632385 | MS.gene27426:CDS |
| CATCACCCCTGCAGTGAATC+AGG | 0.364569 | 6.2:-74632293 | MS.gene27426:intron |
| TATAAGGTAACTTGGGGTTC+AGG | 0.370516 | 6.2:-74631624 | MS.gene27426:CDS |
| AGATCATGTCTCAGTCTTAC+TGG | 0.378244 | 6.2:+74632475 | None:intergenic |
| GTTAGTGCTTGGTCAGCTCT+TGG | 0.379055 | 6.2:-74631651 | MS.gene27426:CDS |
| TCTATTGGCATATGCAACTA+TGG | 0.381168 | 6.2:-74632352 | MS.gene27426:CDS |
| GCAAGACCTTAGAAGAACTT+TGG | 0.387987 | 6.2:-74631191 | MS.gene27426:CDS |
| ACACAGAAGCAGAATCAAAA+TGG | 0.390728 | 6.2:+74633850 | None:intergenic |
| CAAGACCTTAGAAGAACTTT+GGG | 0.404358 | 6.2:-74631190 | MS.gene27426:CDS |
| TCCATCCCAAAGTTCTTCTA+AGG | 0.411991 | 6.2:+74631185 | None:intergenic |
| TTAGGCTTAGCAAAGTCTAT+TGG | 0.418231 | 6.2:-74632367 | MS.gene27426:CDS |
| TCTTCTTTGGTAAATATGAC+AGG | 0.431223 | 6.2:+74632445 | None:intergenic |
| TTTGTTGATGCAATCAAAGT+TGG | 0.432047 | 6.2:-74633879 | MS.gene27426:CDS |
| GGACACAAAATGCCAGTCAT+AGG | 0.432511 | 6.2:-74633954 | MS.gene27426:CDS |
| TGGAGCTTATAAGGTAACTT+GGG | 0.443096 | 6.2:-74631631 | MS.gene27426:CDS |
| GAAGCAAGAACATCATTTGA+TGG | 0.443280 | 6.2:+74633906 | None:intergenic |
| TGAGATGGGTGTACCAAATA+GGG | 0.445832 | 6.2:-74631371 | MS.gene27426:CDS |
| AATTTCCCTTGCTGCCAAGA+TGG | 0.448923 | 6.2:+74631705 | None:intergenic |
| TTTAATGTGGTCTTAAGAGC+TGG | 0.453099 | 6.2:+74633699 | None:intergenic |
| CCATGTCCCTTCTATATCAA+AGG | 0.457170 | 6.2:+74632414 | None:intergenic |
| TTGGAGCTTATAAGGTAACT+TGG | 0.473391 | 6.2:-74631632 | MS.gene27426:CDS |
| CAAGACATAGCAGCTGCTAA+AGG | 0.481250 | 6.2:-74631576 | MS.gene27426:CDS |
| CATGTCCCTTCTATATCAAA+GGG | 0.492063 | 6.2:+74632415 | None:intergenic |
| CTTGGCAGCAAGGGAAATTG+AGG | 0.495239 | 6.2:-74631701 | MS.gene27426:CDS |
| CTGATTCACTGCAGGGGTGA+TGG | 0.501160 | 6.2:+74632294 | None:intergenic |
| TACTTCCCTTTGATATAGAA+GGG | 0.517381 | 6.2:-74632420 | MS.gene27426:CDS |
| ACAATGTTGTTTAGAAAGCT+GGG | 0.519264 | 6.2:-74632532 | MS.gene27426:intron |
| AAGGAATTCATGTTAGTGCT+TGG | 0.521655 | 6.2:-74631662 | MS.gene27426:CDS |
| ATACATACCTGATTCACTGC+AGG | 0.522566 | 6.2:+74632286 | None:intergenic |
| TATGGAACAGAAGAAGCTAT+AGG | 0.527194 | 6.2:-74633828 | MS.gene27426:CDS |
| AAAATGCCAGTCATAGGAAT+GGG | 0.533740 | 6.2:-74633948 | MS.gene27426:CDS |
| TTGGGGTTCAGGCGCTGTCG+TGG | 0.539309 | 6.2:-74631613 | MS.gene27426:CDS |
| AAAGCTGGGAACGGAGTATG+TGG | 0.541166 | 6.2:-74632518 | MS.gene27426:CDS |
| ATTCATAGCTTACTTTAATG+TGG | 0.541642 | 6.2:+74633686 | None:intergenic |
| CCTTTGATATAGAAGGGACA+TGG | 0.542358 | 6.2:-74632414 | MS.gene27426:CDS |
| AGGTTGAGATGAATCCATCT+TGG | 0.554268 | 6.2:-74631719 | MS.gene27426:CDS |
| CCAGAAGTGTTGTTAAACTC+AGG | 0.555434 | 6.2:-74633975 | MS.gene27426:CDS |
| GTGGCAAAAGCTTTAGAAGA+AGG | 0.556305 | 6.2:-74633798 | MS.gene27426:CDS |
| CAAAATGCCAGTCATAGGAA+TGG | 0.558036 | 6.2:-74633949 | MS.gene27426:CDS |
| CCACAACGTAGGCAATACTT+AGG | 0.558484 | 6.2:-74631243 | MS.gene27426:CDS |
| CTAAAAGCTTTAACAAAGAG+AGG | 0.559432 | 6.2:-74631335 | MS.gene27426:CDS |
| ACCTTAGAAGAACTTTGGGA+TGG | 0.559848 | 6.2:-74631186 | MS.gene27426:CDS |
| CTTCTTTGGTAAATATGACA+GGG | 0.570915 | 6.2:+74632446 | None:intergenic |
| ATGAATCCATCTTGGCAGCA+AGG | 0.570929 | 6.2:-74631711 | MS.gene27426:CDS |
| CCAAATAGGGTCAAGTGCAA+TGG | 0.574378 | 6.2:-74631358 | MS.gene27426:CDS |
| GAAGTTCCCATTCCTATGAC+TGG | 0.576432 | 6.2:+74633942 | None:intergenic |
| TACATACCTGATTCACTGCA+GGG | 0.578772 | 6.2:+74632287 | None:intergenic |
| TTGGCAGCAAGGGAAATTGA+GGG | 0.581218 | 6.2:-74631700 | MS.gene27426:CDS |
| TGAATCCATCTTGGCAGCAA+GGG | 0.582624 | 6.2:-74631710 | MS.gene27426:CDS |
| CCTAAGTATTGCCTACGTTG+TGG | 0.585880 | 6.2:+74631243 | None:intergenic |
| AGAAGGGACATGGAAAGCAA+TGG | 0.586366 | 6.2:-74632404 | MS.gene27426:CDS |
| GTTGTTTAGAAAGCTGGGAA+CGG | 0.591717 | 6.2:-74632527 | MS.gene27426:intron |
| GGCAATACTTAGGAGATATG+TGG | 0.599159 | 6.2:-74631233 | MS.gene27426:CDS |
| TAATCTGCATCAGTGTTCCA+TGG | 0.604256 | 6.2:+74633735 | None:intergenic |
| GCTCAAAATCAAATATGTCA+AGG | 0.606149 | 6.2:+74631301 | None:intergenic |
| GGAGCTTATAAGGTAACTTG+GGG | 0.607696 | 6.2:-74631630 | MS.gene27426:CDS |
| AGAAGCTATAGGCATGGCTG+TGG | 0.608547 | 6.2:-74633817 | MS.gene27426:CDS |
| AACAGAAGAAGCTATAGGCA+TGG | 0.636370 | 6.2:-74633823 | MS.gene27426:CDS |
| ACATACCTGATTCACTGCAG+GGG | 0.700439 | 6.2:+74632288 | None:intergenic |
| TTAAGCAGATTCCACAACGT+AGG | 0.734747 | 6.2:-74631254 | MS.gene27426:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAAAATGTAATATCAA+AGG | - | chr6.2:74632410-74632429 | MS.gene27426:CDS | 10.0% |
| !! | TTATAAAACATGTTTATAAA+TGG | - | chr6.2:74633643-74633662 | MS.gene27426:intron | 10.0% |
| !! | ATGTCAAAAAGTAAATTAAA+GGG | - | chr6.2:74632557-74632576 | MS.gene27426:intron | 15.0% |
| !! | ATTGAAATTCTATTATTAAC+CGG | + | chr6.2:74633205-74633224 | None:intergenic | 15.0% |
| !! | TATGTCAAAAAGTAAATTAA+AGG | - | chr6.2:74632556-74632575 | MS.gene27426:intron | 15.0% |
| !!! | AATAAAGTTTTTTAAAACCA+TGG | + | chr6.2:74632181-74632200 | None:intergenic | 15.0% |
| !!! | TACTATATCTTTTACTTTTA+TGG | - | chr6.2:74631557-74631576 | MS.gene27426:intron | 15.0% |
| !!! | TTAACTAAATTCCTTTTTTT+AGG | + | chr6.2:74633232-74633251 | None:intergenic | 15.0% |
| !!! | TTATTTTCTGTTCAATTTAA+CGG | + | chr6.2:74633011-74633030 | None:intergenic | 15.0% |
| !!! | TTTTGAATATCTTTTTATGT+TGG | - | chr6.2:74631666-74631685 | MS.gene27426:CDS | 15.0% |
| !! | AACTTTATTACAATAACGAA+AGG | - | chr6.2:74632192-74632211 | MS.gene27426:intron | 20.0% |
| !! | AATAGCCAAATAATGTATAT+TGG | + | chr6.2:74631626-74631645 | None:intergenic | 20.0% |
| !! | AATATACATTATTTGGCTAT+TGG | - | chr6.2:74631625-74631644 | MS.gene27426:CDS | 20.0% |
| !! | ACAACTTTGTAAATAAATCT+GGG | - | chr6.2:74632387-74632406 | MS.gene27426:CDS | 20.0% |
| !! | ATGATTATGAAGTTAAATGT+TGG | - | chr6.2:74633417-74633436 | MS.gene27426:intron | 20.0% |
| !! | ATTGTAAGTGGATAAATATA+GGG | - | chr6.2:74631869-74631888 | MS.gene27426:intron | 20.0% |
| !! | CATTTCCAATATACATTATT+TGG | - | chr6.2:74631618-74631637 | MS.gene27426:CDS | 20.0% |
| !! | TCAGTAAGTTGTTAAAATAT+GGG | - | chr6.2:74631901-74631920 | MS.gene27426:intron | 20.0% |
| !! | TGAAATGTGATATATTTACA+TGG | - | chr6.2:74632215-74632234 | MS.gene27426:intron | 20.0% |
| !! | TGATAACAATGAACAAAAAT+GGG | + | chr6.2:74632922-74632941 | None:intergenic | 20.0% |
| !! | TTAAAACATTCATAAAGTCA+TGG | + | chr6.2:74631782-74631801 | None:intergenic | 20.0% |
| !! | TTAACTTCATAATCATTAGT+AGG | + | chr6.2:74633413-74633432 | None:intergenic | 20.0% |
| !! | TTGAAATATTCACAAAATCA+GGG | - | chr6.2:74631993-74632012 | MS.gene27426:intron | 20.0% |
| !! | TTTCAATATTGCCTAAAAAA+AGG | - | chr6.2:74633218-74633237 | MS.gene27426:intron | 20.0% |
| !! | TTTGTTCATTGTTATCAAAA+TGG | - | chr6.2:74632925-74632944 | MS.gene27426:intron | 20.0% |
| !!! | ACATAATCCTTCAATTTTTA+GGG | + | chr6.2:74632541-74632560 | None:intergenic | 20.0% |
| !!! | ACTTTATGAATGTTTTAAGA+AGG | - | chr6.2:74631784-74631803 | MS.gene27426:intron | 20.0% |
| !!! | ATTTTGTGAATATTTCAAAC+TGG | + | chr6.2:74631991-74632010 | None:intergenic | 20.0% |
| !!! | TCTTGTACAAATCTTTAAAA+CGG | - | chr6.2:74632342-74632361 | MS.gene27426:CDS | 20.0% |
| !!! | TTGATAACAATGAACAAAAA+TGG | + | chr6.2:74632923-74632942 | None:intergenic | 20.0% |
| !!! | TTTAGTTATTTTTTCAACAG+TGG | - | chr6.2:74633173-74633192 | MS.gene27426:intron | 20.0% |
| !!! | TTTCAACTGATCAAATTTTA+CGG | - | chr6.2:74632111-74632130 | MS.gene27426:intron | 20.0% |
| !!! | TTTGAAATATTCACAAAATC+AGG | - | chr6.2:74631992-74632011 | MS.gene27426:intron | 20.0% |
| ! | ATTCATAGCTTACTTTAATG+TGG | + | chr6.2:74631486-74631505 | None:intergenic | 25.0% |
| ! | ATTTGATCAGTTGAAATTAG+CGG | + | chr6.2:74632107-74632126 | None:intergenic | 25.0% |
| ! | CAAAAAATTGACTAAACTCT+TGG | - | chr6.2:74632843-74632862 | MS.gene27426:intron | 25.0% |
| ! | CAGTAAGTTGTTAAAATATG+GGG | - | chr6.2:74631902-74631921 | MS.gene27426:intron | 25.0% |
| ! | GACAACTTTGTAAATAAATC+TGG | - | chr6.2:74632386-74632405 | MS.gene27426:CDS | 25.0% |
| ! | GATTGTAAGTGGATAAATAT+AGG | - | chr6.2:74631868-74631887 | MS.gene27426:intron | 25.0% |
| ! | GGGAAAATATTGAAAACAAT+GGG | - | chr6.2:74632364-74632383 | MS.gene27426:CDS | 25.0% |
| ! | GTCAGTAAGTTGTTAAAATA+TGG | - | chr6.2:74631900-74631919 | MS.gene27426:intron | 25.0% |
| ! | TATTACGCAAATATTACACA+TGG | - | chr6.2:74632080-74632099 | MS.gene27426:intron | 25.0% |
| !! | CAAAAAAGTGTATATTTCCA+TGG | - | chr6.2:74632161-74632180 | MS.gene27426:intron | 25.0% |
| !! | CACATTATGATTTCATTTTC+AGG | - | chr6.2:74633769-74633788 | MS.gene27426:CDS | 25.0% |
| !! | GACATAATCCTTCAATTTTT+AGG | + | chr6.2:74632542-74632561 | None:intergenic | 25.0% |
| !! | TTCAACTGATCAAATTTTAC+GGG | - | chr6.2:74632112-74632131 | MS.gene27426:intron | 25.0% |
| !! | TTCTTTTCCCTAAAAATTGA+AGG | - | chr6.2:74632531-74632550 | MS.gene27426:intron | 25.0% |
| !! | TTGGAATTGATTTCTATAAC+AGG | - | chr6.2:74631685-74631704 | MS.gene27426:CDS | 25.0% |
| !!! | CAAGAGTTTAGTCAATTTTT+TGG | + | chr6.2:74632845-74632864 | None:intergenic | 25.0% |
| !!! | CTTGTACAAATCTTTAAAAC+GGG | - | chr6.2:74632343-74632362 | MS.gene27426:CDS | 25.0% |
| !!! | TAAATGTTGGTTTCATTTTC+AGG | - | chr6.2:74633430-74633449 | MS.gene27426:intron | 25.0% |
| !!! | TAACAACCACTTTTATCATA+TGG | + | chr6.2:74633673-74633692 | None:intergenic | 25.0% |
| !!! | TTGTAAAGATAGTTCTAGTT+CGG | - | chr6.2:74633304-74633323 | MS.gene27426:intron | 25.0% |
| !!! | TTGTACAAATCTTTAAAACG+GGG | - | chr6.2:74632344-74632363 | MS.gene27426:CDS | 25.0% |
| AAAGGGAAGTAAATCTTCTT+TGG | + | chr6.2:74632740-74632759 | None:intergenic | 30.0% | |
| AAGCAGTTAAGGAACAATAA+TGG | + | chr6.2:74632608-74632627 | None:intergenic | 30.0% | |
| ACTTAATCTTTGTACCAGTT+CGG | - | chr6.2:74633344-74633363 | MS.gene27426:intron | 30.0% | |
| AGATATTAAAATCGAGTAGC+TGG | + | chr6.2:74632029-74632048 | None:intergenic | 30.0% | |
| AGTCTATCAAAACAATTCGT+CGG | + | chr6.2:74632475-74632494 | None:intergenic | 30.0% | |
| CTTCTTTGGTAAATATGACA+GGG | + | chr6.2:74632726-74632745 | None:intergenic | 30.0% | |
| GCTCAAAATCAAATATGTCA+AGG | + | chr6.2:74633871-74633890 | None:intergenic | 30.0% | |
| GGGGAAAATATTGAAAACAA+TGG | - | chr6.2:74632363-74632382 | MS.gene27426:CDS | 30.0% | |
| GTCCTTCAAAGATTATGTTA+GGG | - | chr6.2:74631837-74631856 | MS.gene27426:intron | 30.0% | |
| TACTTCCCTTTGATATAGAA+GGG | - | chr6.2:74632749-74632768 | MS.gene27426:intron | 30.0% | |
| TCAAAAGACCAAAAGAAACA+AGG | + | chr6.2:74631652-74631671 | None:intergenic | 30.0% | |
| TCGAGAGTTTAATAGAATCA+GGG | - | chr6.2:74631964-74631983 | MS.gene27426:intron | 30.0% | |
| TCTTCTTTGGTAAATATGAC+AGG | + | chr6.2:74632727-74632746 | None:intergenic | 30.0% | |
| TGGATCTTTATCTGATTCAT+TGG | - | chr6.2:74632671-74632690 | MS.gene27426:intron | 30.0% | |
| TTACTTCCCTTTGATATAGA+AGG | - | chr6.2:74632748-74632767 | MS.gene27426:intron | 30.0% | |
| TTCGAGAGTTTAATAGAATC+AGG | - | chr6.2:74631963-74631982 | MS.gene27426:intron | 30.0% | |
| TTTGTTGATGCAATCAAAGT+TGG | - | chr6.2:74631290-74631309 | MS.gene27426:CDS | 30.0% | |
| ! | ACAATGTTGTTTAGAAAGCT+GGG | - | chr6.2:74632637-74632656 | MS.gene27426:intron | 30.0% |
| ! | CTAAAAGCTTTAACAAAGAG+AGG | - | chr6.2:74633834-74633853 | MS.gene27426:CDS | 30.0% |
| ! | GATTAAGTGTACTAGTTTAG+TGG | + | chr6.2:74633332-74633351 | None:intergenic | 30.0% |
| ! | TACAATGTTGTTTAGAAAGC+TGG | - | chr6.2:74632636-74632655 | MS.gene27426:intron | 30.0% |
| ! | TTAAATCGATGTCCTGTTTT+CGG | - | chr6.2:74632285-74632304 | MS.gene27426:intron | 30.0% |
| ! | TTTTCAACAGTGGTAATTAC+CGG | - | chr6.2:74633183-74633202 | MS.gene27426:intron | 30.0% |
| !! | AACTTTTGGAAGTCATGATT+AGG | - | chr6.2:74632954-74632973 | MS.gene27426:intron | 30.0% |
| !! | ATGGAAGAGTGTTATAAGTT+AGG | - | chr6.2:74632784-74632803 | MS.gene27426:intron | 30.0% |
| !! | GACATCGATTTAAAACAATG+TGG | + | chr6.2:74632278-74632297 | None:intergenic | 30.0% |
| !! | TTTTTAGGGAAAAGAAACCT+TGG | + | chr6.2:74632527-74632546 | None:intergenic | 30.0% |
| !!! | CAAAATGGTCTTGTAACTTT+TGG | - | chr6.2:74632940-74632959 | MS.gene27426:intron | 30.0% |
| AAAATGCCAGTCATAGGAAT+GGG | - | chr6.2:74631221-74631240 | MS.gene27426:CDS | 35.0% | |
| AAGGAATTCATGTTAGTGCT+TGG | - | chr6.2:74633507-74633526 | MS.gene27426:intron | 35.0% | |
| ACACAGAAGCAGAATCAAAA+TGG | + | chr6.2:74631322-74631341 | None:intergenic | 35.0% | |
| CAAGACCTTAGAAGAACTTT+GGG | - | chr6.2:74633979-74633998 | MS.gene27426:CDS | 35.0% | |
| CATGTCCCTTCTATATCAAA+GGG | + | chr6.2:74632757-74632776 | None:intergenic | 35.0% | |
| CGATTCAGAAAGAATCAGTT+TGG | - | chr6.2:74633255-74633274 | MS.gene27426:intron | 35.0% | |
| CGTCCTTCAAAGATTATGTT+AGG | - | chr6.2:74631836-74631855 | MS.gene27426:intron | 35.0% | |
| GAAGCAAGAACATCATTTGA+TGG | + | chr6.2:74631266-74631285 | None:intergenic | 35.0% | |
| GACCAAAACTAAAAGAGTCA+GGG | + | chr6.2:74631811-74631830 | None:intergenic | 35.0% | |
| GATATGTGGCTATCTGAAAA+TGG | - | chr6.2:74633950-74633969 | MS.gene27426:CDS | 35.0% | |
| GGGACTAAATTGATTGTAAG+TGG | - | chr6.2:74631857-74631876 | MS.gene27426:intron | 35.0% | |
| GGTCATCCATATGATAAAAG+TGG | - | chr6.2:74633664-74633683 | MS.gene27426:intron | 35.0% | |
| GTAATTCAGAATTCCGTCAA+GGG | + | chr6.2:74632505-74632524 | None:intergenic | 35.0% | |
| GTCCCTAACATAATCTTTGA+AGG | + | chr6.2:74631842-74631861 | None:intergenic | 35.0% | |
| GTGAACTATCTGTCACAATT+CGG | - | chr6.2:74633085-74633104 | MS.gene27426:intron | 35.0% | |
| GTTGCTAATACATGTCATGA+TGG | - | chr6.2:74633745-74633764 | MS.gene27426:CDS | 35.0% | |
| TAAAGGAAAAACTACAGCTC+AGG | - | chr6.2:74633610-74633629 | MS.gene27426:intron | 35.0% | |
| TATCAAAGGTTTGTGACCAA+TGG | - | chr6.2:74632424-74632443 | MS.gene27426:CDS | 35.0% | |
| TATGGAACAGAAGAAGCTAT+AGG | - | chr6.2:74631341-74631360 | MS.gene27426:CDS | 35.0% | |
| TCTATTGGCATATGCAACTA+TGG | - | chr6.2:74632817-74632836 | MS.gene27426:intron | 35.0% | |
| TGAACTCTGATCGACAATTA+AGG | - | chr6.2:74633033-74633052 | MS.gene27426:intron | 35.0% | |
| TGACCAAAACTAAAAGAGTC+AGG | + | chr6.2:74631812-74631831 | None:intergenic | 35.0% | |
| TGGAAATGAATGAAGACAGA+AGG | + | chr6.2:74631606-74631625 | None:intergenic | 35.0% | |
| TGGAGCTTATAAGGTAACTT+GGG | - | chr6.2:74633538-74633557 | MS.gene27426:intron | 35.0% | |
| TGTCACAATTCGGTTCTTTA+TGG | - | chr6.2:74633095-74633114 | MS.gene27426:intron | 35.0% | |
| TTAGGCTTAGCAAAGTCTAT+TGG | - | chr6.2:74632802-74632821 | MS.gene27426:intron | 35.0% | |
| TTGGAGCTTATAAGGTAACT+TGG | - | chr6.2:74633537-74633556 | MS.gene27426:intron | 35.0% | |
| TTTGATTCTGCTTCTGTGTA+TGG | - | chr6.2:74631323-74631342 | MS.gene27426:CDS | 35.0% | |
| ! | GAAATTGAGGGAATTTTGCA+AGG | - | chr6.2:74633481-74633500 | MS.gene27426:intron | 35.0% |
| ! | TTTAATGTGGTCTTAAGAGC+TGG | + | chr6.2:74631473-74631492 | None:intergenic | 35.0% |
| ! | TTTTCATCACTTCAAAGCCA+TGG | - | chr6.2:74631417-74631436 | MS.gene27426:intron | 35.0% |
| !! | CTATTGGTCCTTGTTTCTTT+TGG | - | chr6.2:74631641-74631660 | MS.gene27426:CDS | 35.0% |
| !! | TTAGTAGGAGTGTTCACTTA+TGG | + | chr6.2:74633398-74633417 | None:intergenic | 35.0% |
| !!! | GTCATGGACTTTTTTGAAAG+CGG | + | chr6.2:74631766-74631785 | None:intergenic | 35.0% |
| AAAACTAAAGCGAACCGAAC+TGG | + | chr6.2:74633361-74633380 | None:intergenic | 40.0% | |
| AACAGAAGAAGCTATAGGCA+TGG | - | chr6.2:74631346-74631365 | MS.gene27426:CDS | 40.0% | |
| AACGATTTGAGCTCAACCAT+TGG | + | chr6.2:74632443-74632462 | None:intergenic | 40.0% | |
| AAGTTAGTCCCTGACTTTGT+AGG | - | chr6.2:74631740-74631759 | MS.gene27426:intron | 40.0% | |
| AGATCATGTCTCAGTCTTAC+TGG | + | chr6.2:74632697-74632716 | None:intergenic | 40.0% | |
| AGGTTGAGATGAATCCATCT+TGG | - | chr6.2:74633450-74633469 | MS.gene27426:intron | 40.0% | |
| AGTCCTTGTACAGTCAGTAT+GGG | + | chr6.2:74632052-74632071 | None:intergenic | 40.0% | |
| ATACATACCTGATTCACTGC+AGG | + | chr6.2:74632886-74632905 | None:intergenic | 40.0% | |
| CAAAATGCCAGTCATAGGAA+TGG | - | chr6.2:74631220-74631239 | MS.gene27426:CDS | 40.0% | |
| CAGAAATGTCGTAACTCGTA+AGG | + | chr6.2:74633707-74633726 | None:intergenic | 40.0% | |
| CCATGTCCCTTCTATATCAA+AGG | + | chr6.2:74632758-74632777 | None:intergenic | 40.0% | |
| CCTATACAAACACCGAAAAC+AGG | + | chr6.2:74632300-74632319 | None:intergenic | 40.0% | |
| CCTGAGTTTAACAACACTTC+TGG | + | chr6.2:74631197-74631216 | None:intergenic | 40.0% | |
| CCTTTGATATAGAAGGGACA+TGG | - | chr6.2:74632755-74632774 | MS.gene27426:intron | 40.0% | |
| GACGGAATTCTGAATTACCA+AGG | - | chr6.2:74632507-74632526 | MS.gene27426:CDS | 40.0% | |
| GCAAGACCTTAGAAGAACTT+TGG | - | chr6.2:74633978-74633997 | MS.gene27426:CDS | 40.0% | |
| GGAGCTTATAAGGTAACTTG+GGG | - | chr6.2:74633539-74633558 | MS.gene27426:intron | 40.0% | |
| GGCAATACTTAGGAGATATG+TGG | - | chr6.2:74633936-74633955 | MS.gene27426:CDS | 40.0% | |
| GGTAATTCAGAATTCCGTCA+AGG | + | chr6.2:74632506-74632525 | None:intergenic | 40.0% | |
| GTACCACATACAAGCAGTTA+AGG | + | chr6.2:74632619-74632638 | None:intergenic | 40.0% | |
| GTTCCTTAACTGCTTGTATG+TGG | - | chr6.2:74632613-74632632 | MS.gene27426:intron | 40.0% | |
| GTTGTTTAGAAAGCTGGGAA+CGG | - | chr6.2:74632642-74632661 | MS.gene27426:intron | 40.0% | |
| TAATCTGCATCAGTGTTCCA+TGG | + | chr6.2:74631437-74631456 | None:intergenic | 40.0% | |
| TACAAAGTCAGGGACTAACT+TGG | + | chr6.2:74631741-74631760 | None:intergenic | 40.0% | |
| TACATACCTGATTCACTGCA+GGG | + | chr6.2:74632885-74632904 | None:intergenic | 40.0% | |
| TAGACTTTACCTACCCTTGA+CGG | - | chr6.2:74632489-74632508 | MS.gene27426:CDS | 40.0% | |
| TAGTCCTTGTACAGTCAGTA+TGG | + | chr6.2:74632053-74632072 | None:intergenic | 40.0% | |
| TATAAGGTAACTTGGGGTTC+AGG | - | chr6.2:74633545-74633564 | MS.gene27426:intron | 40.0% | |
| TCCATCCCAAAGTTCTTCTA+AGG | + | chr6.2:74633987-74634006 | None:intergenic | 40.0% | |
| TGAGATGGGTGTACCAAATA+GGG | - | chr6.2:74633798-74633817 | MS.gene27426:CDS | 40.0% | |
| TTAAGCAGATTCCACAACGT+AGG | - | chr6.2:74633915-74633934 | MS.gene27426:CDS | 40.0% | |
| ! | ACCTTAGAAGAACTTTGGGA+TGG | - | chr6.2:74633983-74634002 | MS.gene27426:CDS | 40.0% |
| ! | AGGGAATTTTGCAAGGAGAA+AGG | - | chr6.2:74633488-74633507 | MS.gene27426:intron | 40.0% |
| ! | GGGACTGTACTGATAGTAAA+TGG | - | chr6.2:74631922-74631941 | MS.gene27426:intron | 40.0% |
| !! | CCAGAAGTGTTGTTAAACTC+AGG | - | chr6.2:74631194-74631213 | MS.gene27426:CDS | 40.0% |
| !! | GTGGCAAAAGCTTTAGAAGA+AGG | - | chr6.2:74631371-74631390 | MS.gene27426:CDS | 40.0% |
| !!! | ATTTTCAGGTTGCACTGAGA+TGG | - | chr6.2:74633783-74633802 | MS.gene27426:CDS | 40.0% |
| !!! | CCTGTTTTCGGTGTTTGTAT+AGG | - | chr6.2:74632297-74632316 | MS.gene27426:CDS | 40.0% |
| !!! | GTCCCTGACTCTTTTAGTTT+TGG | - | chr6.2:74631806-74631825 | MS.gene27426:intron | 40.0% |
| !!! | TTTTCAGGTTGCACTGAGAT+GGG | - | chr6.2:74633784-74633803 | MS.gene27426:CDS | 40.0% |
| AATTTCCCTTGCTGCCAAGA+TGG | + | chr6.2:74633467-74633486 | None:intergenic | 45.0% | |
| ACATACCTGATTCACTGCAG+GGG | + | chr6.2:74632884-74632903 | None:intergenic | 45.0% | |
| AGAAGGGACATGGAAAGCAA+TGG | - | chr6.2:74632765-74632784 | MS.gene27426:intron | 45.0% | |
| ATGAATCCATCTTGGCAGCA+AGG | - | chr6.2:74633458-74633477 | MS.gene27426:intron | 45.0% | |
| CAAGACATAGCAGCTGCTAA+AGG | - | chr6.2:74633593-74633612 | MS.gene27426:intron | 45.0% | |
| CCAAATAGGGTCAAGTGCAA+TGG | - | chr6.2:74633811-74633830 | MS.gene27426:CDS | 45.0% | |
| CCACAACGTAGGCAATACTT+AGG | - | chr6.2:74633926-74633945 | MS.gene27426:CDS | 45.0% | |
| CCATTGCACTTGACCCTATT+TGG | + | chr6.2:74633814-74633833 | None:intergenic | 45.0% | |
| CTGAGATGGGTGTACCAAAT+AGG | - | chr6.2:74633797-74633816 | MS.gene27426:CDS | 45.0% | |
| GAAGTTCCCATTCCTATGAC+TGG | + | chr6.2:74631230-74631249 | None:intergenic | 45.0% | |
| GGACACAAAATGCCAGTCAT+AGG | - | chr6.2:74631215-74631234 | MS.gene27426:CDS | 45.0% | |
| GTCAGCTCTTGGAGCTTATA+AGG | - | chr6.2:74633529-74633548 | MS.gene27426:intron | 45.0% | |
| TGAATCCATCTTGGCAGCAA+GGG | - | chr6.2:74633459-74633478 | MS.gene27426:intron | 45.0% | |
| TTCAGAATTCCGTCAAGGGT+AGG | + | chr6.2:74632501-74632520 | None:intergenic | 45.0% | |
| TTGGCAGCAAGGGAAATTGA+GGG | - | chr6.2:74633469-74633488 | MS.gene27426:intron | 45.0% | |
| ! | CCTAAGTATTGCCTACGTTG+TGG | + | chr6.2:74633929-74633948 | None:intergenic | 45.0% |
| ! | TCTCCCATACTGACTGTACA+AGG | - | chr6.2:74632046-74632065 | MS.gene27426:intron | 45.0% |
| AAAGCTGGGAACGGAGTATG+TGG | - | chr6.2:74632651-74632670 | MS.gene27426:intron | 50.0% | |
| AGAAGCTATAGGCATGGCTG+TGG | - | chr6.2:74631352-74631371 | MS.gene27426:CDS | 50.0% | |
| CTTGGCAGCAAGGGAAATTG+AGG | - | chr6.2:74633468-74633487 | MS.gene27426:intron | 50.0% | |
| GAAAGCGGCCTACAAAGTCA+GGG | + | chr6.2:74631751-74631770 | None:intergenic | 50.0% | |
| GTTAGTGCTTGGTCAGCTCT+TGG | - | chr6.2:74633518-74633537 | MS.gene27426:intron | 50.0% | |
| TGAAAGCGGCCTACAAAGTC+AGG | + | chr6.2:74631752-74631771 | None:intergenic | 50.0% | |
| CATCACCCCTGCAGTGAATC+AGG | - | chr6.2:74632876-74632895 | MS.gene27426:intron | 55.0% | |
| CTGATTCACTGCAGGGGTGA+TGG | + | chr6.2:74632878-74632897 | None:intergenic | 55.0% | |
| ! | TTGGGGTTCAGGCGCTGTCG+TGG | - | chr6.2:74633556-74633575 | MS.gene27426:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 74631176 | 74634015 | 74631176 | ID=MS.gene27426 |
| chr6.2 | mRNA | 74631176 | 74634015 | 74631176 | ID=MS.gene27426.t1;Parent=MS.gene27426 |
| chr6.2 | exon | 74633699 | 74634015 | 74633699 | ID=MS.gene27426.t1.exon1;Parent=MS.gene27426.t1 |
| chr6.2 | CDS | 74633699 | 74634015 | 74633699 | ID=cds.MS.gene27426.t1;Parent=MS.gene27426.t1 |
| chr6.2 | exon | 74632294 | 74632540 | 74632294 | ID=MS.gene27426.t1.exon2;Parent=MS.gene27426.t1 |
| chr6.2 | CDS | 74632294 | 74632540 | 74632294 | ID=cds.MS.gene27426.t1;Parent=MS.gene27426.t1 |
| chr6.2 | exon | 74631560 | 74631739 | 74631560 | ID=MS.gene27426.t1.exon3;Parent=MS.gene27426.t1 |
| chr6.2 | CDS | 74631560 | 74631739 | 74631560 | ID=cds.MS.gene27426.t1;Parent=MS.gene27426.t1 |
| chr6.2 | exon | 74631176 | 74631400 | 74631176 | ID=MS.gene27426.t1.exon4;Parent=MS.gene27426.t1 |
| chr6.2 | CDS | 74631176 | 74631400 | 74631176 | ID=cds.MS.gene27426.t1;Parent=MS.gene27426.t1 |
| Gene Sequence |
| Protein sequence |
