Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054810.t1 | XP_003612915.2 | 98.6 | 218 | 1 | 1 | 1 | 218 | 1 | 216 | 1.10E-117 | 432.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054810.t1 | Q8VZS8 | 66.5 | 209 | 70 | 0 | 4 | 212 | 2 | 210 | 8.2e-77 | 288.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054810.t1 | G7KF38 | 98.6 | 218 | 1 | 1 | 1 | 218 | 1 | 216 | 8.1e-118 | 432.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052469 | MS.gene054810 | -0.81717 | 3.79E-52 | -1.69E-46 |
| MS.gene052795 | MS.gene054810 | 0.809716 | 1.65E-50 | -1.69E-46 |
| MS.gene054809 | MS.gene054810 | 0.959395 | 2.15E-117 | -1.69E-46 |
| MS.gene054810 | MS.gene060717 | -0.805816 | 1.11E-49 | -1.69E-46 |
| MS.gene054810 | MS.gene069194 | 0.864013 | 1.65E-64 | -1.69E-46 |
| MS.gene054810 | MS.gene071035 | 0.834522 | 2.85E-56 | -1.69E-46 |
| MS.gene054810 | MS.gene071223 | -0.825059 | 5.76E-54 | -1.69E-46 |
| MS.gene054810 | MS.gene071520 | -0.80008 | 1.70E-48 | -1.69E-46 |
| MS.gene054810 | MS.gene08288 | -0.801334 | 9.46E-49 | -1.69E-46 |
| MS.gene054810 | MS.gene24091 | 0.819602 | 1.07E-52 | -1.69E-46 |
| MS.gene054810 | MS.gene27107 | 0.817275 | 3.59E-52 | -1.69E-46 |
| MS.gene054810 | MS.gene27426 | -0.815628 | 8.39E-52 | -1.69E-46 |
| MS.gene054810 | MS.gene29692 | 0.806835 | 6.78E-50 | -1.69E-46 |
| MS.gene054810 | MS.gene34898 | -0.800991 | 1.11E-48 | -1.69E-46 |
| MS.gene054810 | MS.gene36260 | -0.820139 | 8.03E-53 | -1.69E-46 |
| MS.gene054810 | MS.gene45002 | -0.806612 | 7.56E-50 | -1.69E-46 |
| MS.gene054810 | MS.gene56071 | -0.817867 | 2.64E-52 | -1.69E-46 |
| MS.gene054810 | MS.gene56072 | -0.802513 | 5.41E-49 | -1.69E-46 |
| MS.gene054810 | MS.gene61544 | -0.812848 | 3.45E-51 | -1.69E-46 |
| MS.gene054810 | MS.gene74253 | 0.801628 | 8.23E-49 | -1.69E-46 |
| MS.gene054810 | MS.gene77877 | -0.803007 | 4.28E-49 | -1.69E-46 |
| MS.gene054810 | MS.gene86339 | -0.807566 | 4.75E-50 | -1.69E-46 |
| MS.gene054810 | MS.gene88938 | 0.82142 | 4.08E-53 | -1.69E-46 |
| MS.gene054810 | MS.gene90899 | 0.811361 | 7.28E-51 | -1.69E-46 |
| MS.gene054810 | MS.gene93372 | 0.821375 | 4.18E-53 | -1.69E-46 |
| MS.gene054810 | MS.gene94217 | -0.809015 | 2.33E-50 | -1.69E-46 |
| MS.gene054810 | MS.gene95677 | 0.85794 | 1.16E-62 | -1.69E-46 |
| MS.gene054810 | MS.gene99506 | 0.853073 | 3.04E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054810.t1 | MTR_5g030500 | 98.624 | 218 | 1 | 1 | 1 | 218 | 1 | 216 | 2.37e-160 | 442 |
| MS.gene054810.t1 | MTR_1g016480 | 55.429 | 175 | 72 | 3 | 33 | 206 | 26 | 195 | 5.66e-66 | 202 |
| MS.gene054810.t1 | MTR_3g071740 | 52.663 | 169 | 74 | 2 | 49 | 217 | 69 | 231 | 4.18e-62 | 193 |
| MS.gene054810.t1 | MTR_5g083270 | 49.505 | 202 | 87 | 5 | 16 | 208 | 8 | 203 | 3.34e-61 | 190 |
| MS.gene054810.t1 | MTR_4g014460 | 54.070 | 172 | 74 | 3 | 41 | 211 | 43 | 210 | 3.14e-56 | 178 |
| MS.gene054810.t1 | MTR_7g070050 | 58.788 | 165 | 65 | 2 | 46 | 208 | 13 | 176 | 3.82e-53 | 169 |
| MS.gene054810.t1 | MTR_8g027805 | 45.856 | 181 | 90 | 4 | 30 | 208 | 1 | 175 | 3.30e-49 | 159 |
| MS.gene054810.t1 | MTR_3g090980 | 48.795 | 166 | 78 | 3 | 45 | 209 | 20 | 179 | 3.45e-49 | 159 |
| MS.gene054810.t1 | MTR_1g028380 | 49.398 | 166 | 77 | 3 | 45 | 209 | 18 | 177 | 7.30e-49 | 158 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054810.t1 | AT5G46790 | 66.507 | 209 | 68 | 1 | 1 | 209 | 1 | 207 | 1.04e-91 | 268 |
| MS.gene054810.t1 | AT5G46790 | 66.507 | 209 | 68 | 1 | 1 | 209 | 1 | 207 | 1.04e-91 | 268 |
| MS.gene054810.t1 | AT4G17870 | 69.149 | 188 | 54 | 2 | 30 | 216 | 1 | 185 | 2.14e-91 | 266 |
| MS.gene054810.t1 | AT2G26040 | 57.558 | 172 | 71 | 2 | 33 | 204 | 9 | 178 | 1.25e-67 | 206 |
| MS.gene054810.t1 | AT1G73000 | 52.432 | 185 | 82 | 3 | 31 | 209 | 22 | 206 | 2.37e-66 | 204 |
| MS.gene054810.t1 | AT5G05440 | 54.938 | 162 | 67 | 2 | 46 | 207 | 45 | 200 | 4.36e-61 | 190 |
| MS.gene054810.t1 | AT2G40330 | 51.534 | 163 | 78 | 1 | 50 | 212 | 52 | 213 | 4.04e-57 | 180 |
| MS.gene054810.t1 | AT2G38310 | 55.952 | 168 | 68 | 1 | 50 | 217 | 43 | 204 | 4.37e-52 | 167 |
| MS.gene054810.t1 | AT4G01026 | 51.250 | 160 | 71 | 3 | 50 | 208 | 27 | 180 | 3.50e-50 | 162 |
| MS.gene054810.t1 | AT5G53160 | 48.780 | 164 | 79 | 2 | 45 | 208 | 18 | 176 | 1.32e-49 | 160 |
| MS.gene054810.t1 | AT1G01360 | 47.305 | 167 | 81 | 3 | 43 | 208 | 18 | 178 | 2.90e-49 | 159 |
| MS.gene054810.t1 | AT4G27920 | 47.879 | 165 | 80 | 3 | 45 | 208 | 13 | 172 | 9.34e-49 | 158 |
| MS.gene054810.t1 | AT5G45860 | 54.000 | 150 | 64 | 2 | 59 | 208 | 10 | 154 | 6.25e-39 | 132 |
| MS.gene054810.t1 | AT5G45870 | 52.667 | 150 | 65 | 2 | 59 | 208 | 10 | 153 | 1.28e-38 | 131 |
| MS.gene054810.t1 | AT4G18620 | 48.408 | 157 | 73 | 3 | 57 | 208 | 7 | 160 | 1.44e-33 | 118 |
| MS.gene054810.t1 | AT5G53160 | 50.485 | 103 | 49 | 1 | 45 | 147 | 18 | 118 | 1.21e-29 | 108 |
Find 72 sgRNAs with CRISPR-Local
Find 75 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTACTTCCGTTCACGGTTT+CGG | 0.321183 | 5.2:-22339 | MS.gene054810:CDS |
| TGAGATCTGGACCGTTGTTT+TGG | 0.357741 | 5.2:-22298 | MS.gene054810:CDS |
| GACGACGAACGTCGTGTTAC+CGG | 0.369543 | 5.2:-22408 | MS.gene054810:CDS |
| CGTTCCGTTACTTCCGTTCA+CGG | 0.394929 | 5.2:-22345 | MS.gene054810:CDS |
| GGAGGCCGGAGGGGAGTGTT+AGG | 0.404211 | 5.2:+22712 | None:intergenic |
| TCCTCTTCAGTATTACCTTC+AGG | 0.411978 | 5.2:+22255 | None:intergenic |
| AGAAGCCTGGAGCATTGGTT+GGG | 0.412638 | 5.2:+22627 | None:intergenic |
| GTGATAACGGTGGTGAGATC+TGG | 0.416625 | 5.2:-22311 | MS.gene054810:CDS |
| CTCTCGGTGCTAGTCGCCGC+CGG | 0.416895 | 5.2:+22444 | None:intergenic |
| ACCGTCACGGTTCTTTCCTT+CGG | 0.424743 | 5.2:+22173 | None:intergenic |
| TCACACCACACCTACCTCAT+AGG | 0.430563 | 5.2:-22651 | MS.gene054810:CDS |
| GGTGGAAGCGATGGCGGTGG+AGG | 0.430580 | 5.2:+22776 | None:intergenic |
| ATGAAGTGTTTGTAGATTTG+CGG | 0.443636 | 5.2:+22543 | None:intergenic |
| GTCGGAATCTTGATCGGAGG+TGG | 0.456152 | 5.2:+22758 | None:intergenic |
| ACGCGCCGCCGCAAACCGTC+TGG | 0.474731 | 5.2:-22590 | MS.gene054810:CDS |
| CAATGTCATCTCCGGTCTCC+CGG | 0.474823 | 5.2:-22463 | MS.gene054810:CDS |
| GCTAGTCGCCGCCGGGAGAC+CGG | 0.484689 | 5.2:+22452 | None:intergenic |
| TCCGTTCACGGTTTCGGTGA+CGG | 0.493319 | 5.2:-22333 | MS.gene054810:CDS |
| ACGACGGACCAGACGGTTTG+CGG | 0.500991 | 5.2:+22582 | None:intergenic |
| AGACGGTTTGCGGCGGCGCG+TGG | 0.502746 | 5.2:+22592 | None:intergenic |
| AAAAGCTGCTCTCTCAAAGA+AGG | 0.506128 | 5.2:-22519 | MS.gene054810:CDS |
| GGAGGTGGAAGCGATGGCGG+TGG | 0.507691 | 5.2:+22773 | None:intergenic |
| GAGAAGCCTGGAGCATTGGT+TGG | 0.510173 | 5.2:+22626 | None:intergenic |
| GATGCGTTGAGCGAGAAGCC+TGG | 0.510312 | 5.2:+22614 | None:intergenic |
| GAAGCCTGGAGCATTGGTTG+GGG | 0.513167 | 5.2:+22628 | None:intergenic |
| GAGCGAGAAGCCTGGAGCAT+TGG | 0.514906 | 5.2:+22622 | None:intergenic |
| AGCATTGGTTGGGGCCTATG+AGG | 0.517600 | 5.2:+22637 | None:intergenic |
| CGCGACGTCAATGTCATCTC+CGG | 0.522159 | 5.2:-22471 | MS.gene054810:CDS |
| GTCAAGAACGTCGAGTCTCT+CGG | 0.524491 | 5.2:+22428 | None:intergenic |
| ACCGCCGATGATACTGAAAC+CGG | 0.530952 | 5.2:+22389 | None:intergenic |
| GGGAGTCGAATTCGTGTTGA+CGG | 0.541010 | 5.2:+22691 | None:intergenic |
| GGTTTCGGTGACGGTGATAA+CGG | 0.543393 | 5.2:-22324 | MS.gene054810:CDS |
| TAGGCCCCAACCAATGCTCC+AGG | 0.544690 | 5.2:-22632 | MS.gene054810:CDS |
| CGGAACGGTAATTCTTCAAA+CGG | 0.546020 | 5.2:+22361 | None:intergenic |
| GAATTCGTGTTGACGGAGGC+CGG | 0.548211 | 5.2:+22698 | None:intergenic |
| TTGGTTGGGGCCTATGAGGT+AGG | 0.550389 | 5.2:+22641 | None:intergenic |
| TTTGCGGTTTGTCGAAGCTA+CGG | 0.554765 | 5.2:+22559 | None:intergenic |
| ATCGGAGGTGGAAGCGATGG+CGG | 0.560121 | 5.2:+22770 | None:intergenic |
| TCTCGGTGCTAGTCGCCGCC+GGG | 0.563257 | 5.2:+22445 | None:intergenic |
| TGTGGTGTGAGTTGATGAAA+GGG | 0.564889 | 5.2:+22664 | None:intergenic |
| CGTGTTGACGGAGGCCGGAG+GGG | 0.570765 | 5.2:+22703 | None:intergenic |
| TTGATCGGAGGTGGAAGCGA+TGG | 0.571051 | 5.2:+22767 | None:intergenic |
| TTCGTGTTGACGGAGGCCGG+AGG | 0.572606 | 5.2:+22701 | None:intergenic |
| ACCGTCACCGAAACCGTGAA+CGG | 0.574955 | 5.2:+22332 | None:intergenic |
| TCGTGTTGACGGAGGCCGGA+GGG | 0.581954 | 5.2:+22702 | None:intergenic |
| TGAGTTGATGAAAGGGATGA+GGG | 0.584437 | 5.2:+22671 | None:intergenic |
| GAAACCGTGAACGGAAGTAA+CGG | 0.584827 | 5.2:+22341 | None:intergenic |
| GGAAAGAACCGTGACGGTGA+CGG | 0.588055 | 5.2:-22168 | MS.gene054810:CDS |
| CTGACTTACCGTCACCGTCA+CGG | 0.588675 | 5.2:+22160 | None:intergenic |
| CACCACCTAACACTCCCCTC+CGG | 0.591738 | 5.2:-22717 | MS.gene054810:CDS |
| GTGTTAGGTGGTGTTGTGTG+CGG | 0.591821 | 5.2:+22727 | None:intergenic |
| TACGTCGTTGATGTTCCTGA+AGG | 0.592427 | 5.2:-22270 | MS.gene054810:CDS |
| GTGAGTTGATGAAAGGGATG+AGG | 0.592854 | 5.2:+22670 | None:intergenic |
| TTCGTCGGAATCTTGATCGG+AGG | 0.592857 | 5.2:+22755 | None:intergenic |
| GTTACCGGTTTCAGTATCAT+CGG | 0.595373 | 5.2:-22393 | MS.gene054810:CDS |
| GTGTGGTGTGAGTTGATGAA+AGG | 0.597891 | 5.2:+22663 | None:intergenic |
| TTAGGTGGTGTTGTGTGCGG+TGG | 0.600549 | 5.2:+22730 | None:intergenic |
| GGCCGGAGGGGAGTGTTAGG+TGG | 0.606358 | 5.2:+22715 | None:intergenic |
| AAGCTTGCGTCTGTCACCGA+AGG | 0.615885 | 5.2:-22189 | MS.gene054810:CDS |
| TCCTGAAGGTAATACTGAAG+AGG | 0.617871 | 5.2:-22256 | MS.gene054810:CDS |
| TGGGGCCTATGAGGTAGGTG+TGG | 0.623679 | 5.2:+22646 | None:intergenic |
| GCTACGGACGACGGACCAGA+CGG | 0.637251 | 5.2:+22575 | None:intergenic |
| ACGGACCAGACGGTTTGCGG+CGG | 0.644883 | 5.2:+22585 | None:intergenic |
| ACCGGTTTCAGTATCATCGG+CGG | 0.669189 | 5.2:-22390 | MS.gene054810:CDS |
| CTGAAGATTGAGCTTCACAA+CGG | 0.671146 | 5.2:+22212 | None:intergenic |
| ACCGAAGGAAAGAACCGTGA+CGG | 0.674541 | 5.2:-22174 | MS.gene054810:CDS |
| AGTCGAATTCGTGTTGACGG+AGG | 0.683583 | 5.2:+22694 | None:intergenic |
| TTTGTCGAAGCTACGGACGA+CGG | 0.690180 | 5.2:+22566 | None:intergenic |
| GACGTAAGATTCCAAAACAA+CGG | 0.691402 | 5.2:+22287 | None:intergenic |
| TTCGGTGACGGTGATAACGG+TGG | 0.691549 | 5.2:-22321 | MS.gene054810:CDS |
| TGTCATCTCCGGTCTCCCGG+CGG | 0.695228 | 5.2:-22460 | MS.gene054810:CDS |
| CGTGAACGGAAGTAACGGAA+CGG | 0.712612 | 5.2:+22346 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ATGAAGTGTTTGTAGATTTG+CGG | + | chr5.2:22407-22426 | None:intergenic | 30.0% |
| ! | GAAGGTTTTCAAATGAAAGT+CGG | - | chr5.2:22446-22465 | MS.gene054810:CDS | 30.0% |
| GACGTAAGATTCCAAAACAA+CGG | + | chr5.2:22663-22682 | None:intergenic | 35.0% | |
| AAAAGCTGCTCTCTCAAAGA+AGG | - | chr5.2:22428-22447 | MS.gene054810:CDS | 40.0% | |
| CGGAACGGTAATTCTTCAAA+CGG | + | chr5.2:22589-22608 | None:intergenic | 40.0% | |
| CTGAAGATTGAGCTTCACAA+CGG | + | chr5.2:22738-22757 | None:intergenic | 40.0% | |
| TCCTCTTCAGTATTACCTTC+AGG | + | chr5.2:22695-22714 | None:intergenic | 40.0% | |
| TCCTGAAGGTAATACTGAAG+AGG | - | chr5.2:22691-22710 | MS.gene054810:CDS | 40.0% | |
| ! | GTTTTCGTCGGAATCTTGAT+CGG | + | chr5.2:22198-22217 | None:intergenic | 40.0% |
| !! | GTTACCGGTTTCAGTATCAT+CGG | - | chr5.2:22554-22573 | MS.gene054810:CDS | 40.0% |
| !! | TGAGTTGATGAAAGGGATGA+GGG | + | chr5.2:22279-22298 | None:intergenic | 40.0% |
| !! | TGTGGTGTGAGTTGATGAAA+GGG | + | chr5.2:22286-22305 | None:intergenic | 40.0% |
| GAAACCGTGAACGGAAGTAA+CGG | + | chr5.2:22609-22628 | None:intergenic | 45.0% | |
| GTTACTTCCGTTCACGGTTT+CGG | - | chr5.2:22608-22627 | MS.gene054810:CDS | 45.0% | |
| TACGTCGTTGATGTTCCTGA+AGG | - | chr5.2:22677-22696 | MS.gene054810:CDS | 45.0% | |
| TTTGCGGTTTGTCGAAGCTA+CGG | + | chr5.2:22391-22410 | None:intergenic | 45.0% | |
| ! | TGAGATCTGGACCGTTGTTT+TGG | - | chr5.2:22649-22668 | MS.gene054810:CDS | 45.0% |
| !! | GTGAGTTGATGAAAGGGATG+AGG | + | chr5.2:22280-22299 | None:intergenic | 45.0% |
| !! | GTGTGGTGTGAGTTGATGAA+AGG | + | chr5.2:22287-22306 | None:intergenic | 45.0% |
| ACCGAAGGAAAGAACCGTGA+CGG | - | chr5.2:22773-22792 | MS.gene054810:CDS | 50.0% | |
| ACCGCCGATGATACTGAAAC+CGG | + | chr5.2:22561-22580 | None:intergenic | 50.0% | |
| ACCGTCACGGTTCTTTCCTT+CGG | + | chr5.2:22777-22796 | None:intergenic | 50.0% | |
| CGTTCCGTTACTTCCGTTCA+CGG | - | chr5.2:22602-22621 | MS.gene054810:CDS | 50.0% | |
| GGGAGTCGAATTCGTGTTGA+CGG | + | chr5.2:22259-22278 | None:intergenic | 50.0% | |
| GTCAAGAACGTCGAGTCTCT+CGG | + | chr5.2:22522-22541 | None:intergenic | 50.0% | |
| TCACACCACACCTACCTCAT+AGG | - | chr5.2:22296-22315 | MS.gene054810:CDS | 50.0% | |
| TTCGTCGGAATCTTGATCGG+AGG | + | chr5.2:22195-22214 | None:intergenic | 50.0% | |
| TTTGTCGAAGCTACGGACGA+CGG | + | chr5.2:22384-22403 | None:intergenic | 50.0% | |
| ! | ACCGGTTTCAGTATCATCGG+CGG | - | chr5.2:22557-22576 | MS.gene054810:CDS | 50.0% |
| ! | AGTCGAATTCGTGTTGACGG+AGG | + | chr5.2:22256-22275 | None:intergenic | 50.0% |
| ! | CGTGAACGGAAGTAACGGAA+CGG | + | chr5.2:22604-22623 | None:intergenic | 50.0% |
| ! | GGTTTCGGTGACGGTGATAA+CGG | - | chr5.2:22623-22642 | MS.gene054810:CDS | 50.0% |
| ! | TTGTGTGCGGTGGTTTTCGT+CGG | + | chr5.2:22210-22229 | None:intergenic | 50.0% |
| !! | AGAAGCCTGGAGCATTGGTT+GGG | + | chr5.2:22323-22342 | None:intergenic | 50.0% |
| !! | GTGATAACGGTGGTGAGATC+TGG | - | chr5.2:22636-22655 | MS.gene054810:CDS | 50.0% |
| !! | GTGTTAGGTGGTGTTGTGTG+CGG | + | chr5.2:22223-22242 | None:intergenic | 50.0% |
| AAGCTTGCGTCTGTCACCGA+AGG | - | chr5.2:22758-22777 | MS.gene054810:CDS | 55.0% | |
| ACCGTCACCGAAACCGTGAA+CGG | + | chr5.2:22618-22637 | None:intergenic | 55.0% | |
| CAATGTCATCTCCGGTCTCC+CGG | - | chr5.2:22484-22503 | MS.gene054810:CDS | 55.0% | |
| CGCGACGTCAATGTCATCTC+CGG | - | chr5.2:22476-22495 | MS.gene054810:CDS | 55.0% | |
| CTGACTTACCGTCACCGTCA+CGG | + | chr5.2:22790-22809 | None:intergenic | 55.0% | |
| GACGACGAACGTCGTGTTAC+CGG | - | chr5.2:22539-22558 | MS.gene054810:CDS | 55.0% | |
| GGAAAGAACCGTGACGGTGA+CGG | - | chr5.2:22779-22798 | MS.gene054810:CDS | 55.0% | |
| GTCGGAATCTTGATCGGAGG+TGG | + | chr5.2:22192-22211 | None:intergenic | 55.0% | |
| TCCGTTCACGGTTTCGGTGA+CGG | - | chr5.2:22614-22633 | MS.gene054810:CDS | 55.0% | |
| TTGATCGGAGGTGGAAGCGA+TGG | + | chr5.2:22183-22202 | None:intergenic | 55.0% | |
| TTGGTTGGGGCCTATGAGGT+AGG | + | chr5.2:22309-22328 | None:intergenic | 55.0% | |
| ! | GAATTCGTGTTGACGGAGGC+CGG | + | chr5.2:22252-22271 | None:intergenic | 55.0% |
| !! | AGCATTGGTTGGGGCCTATG+AGG | + | chr5.2:22313-22332 | None:intergenic | 55.0% |
| !! | GAAGCCTGGAGCATTGGTTG+GGG | + | chr5.2:22322-22341 | None:intergenic | 55.0% |
| !! | GAGAAGCCTGGAGCATTGGT+TGG | + | chr5.2:22324-22343 | None:intergenic | 55.0% |
| !! | TTAGGTGGTGTTGTGTGCGG+TGG | + | chr5.2:22220-22239 | None:intergenic | 55.0% |
| !! | TTCGGTGACGGTGATAACGG+TGG | - | chr5.2:22626-22645 | MS.gene054810:CDS | 55.0% |
| ACGACGGACCAGACGGTTTG+CGG | + | chr5.2:22368-22387 | None:intergenic | 60.0% | |
| ATCGGAGGTGGAAGCGATGG+CGG | + | chr5.2:22180-22199 | None:intergenic | 60.0% | |
| CACCACCTAACACTCCCCTC+CGG | - | chr5.2:22230-22249 | MS.gene054810:CDS | 60.0% | |
| GAGCGAGAAGCCTGGAGCAT+TGG | + | chr5.2:22328-22347 | None:intergenic | 60.0% | |
| GATGCGTTGAGCGAGAAGCC+TGG | + | chr5.2:22336-22355 | None:intergenic | 60.0% | |
| TAGGCCCCAACCAATGCTCC+AGG | - | chr5.2:22315-22334 | MS.gene054810:CDS | 60.0% | |
| TGGGGCCTATGAGGTAGGTG+TGG | + | chr5.2:22304-22323 | None:intergenic | 60.0% | |
| ACGGACCAGACGGTTTGCGG+CGG | + | chr5.2:22365-22384 | None:intergenic | 65.0% | |
| GCTACGGACGACGGACCAGA+CGG | + | chr5.2:22375-22394 | None:intergenic | 65.0% | |
| TGTCATCTCCGGTCTCCCGG+CGG | - | chr5.2:22487-22506 | MS.gene054810:CDS | 65.0% | |
| ! | TCGTGTTGACGGAGGCCGGA+GGG | + | chr5.2:22248-22267 | None:intergenic | 65.0% |
| ! | TTCGTGTTGACGGAGGCCGG+AGG | + | chr5.2:22249-22268 | None:intergenic | 65.0% |
| ! | CGTGTTGACGGAGGCCGGAG+GGG | + | chr5.2:22247-22266 | None:intergenic | 70.0% |
| ! | GGAGGTGGAAGCGATGGCGG+TGG | + | chr5.2:22177-22196 | None:intergenic | 70.0% |
| ! | GGTGGAAGCGATGGCGGTGG+AGG | + | chr5.2:22174-22193 | None:intergenic | 70.0% |
| !! | CTCTCGGTGCTAGTCGCCGC+CGG | + | chr5.2:22506-22525 | None:intergenic | 70.0% |
| !! | GGAGGCCGGAGGGGAGTGTT+AGG | + | chr5.2:22238-22257 | None:intergenic | 70.0% |
| !! | GGCCGGAGGGGAGTGTTAGG+TGG | + | chr5.2:22235-22254 | None:intergenic | 70.0% |
| !! | TCTCGGTGCTAGTCGCCGCC+GGG | + | chr5.2:22505-22524 | None:intergenic | 70.0% |
| ACGCGCCGCCGCAAACCGTC+TGG | - | chr5.2:22357-22376 | MS.gene054810:CDS | 75.0% | |
| AGACGGTTTGCGGCGGCGCG+TGG | + | chr5.2:22358-22377 | None:intergenic | 75.0% | |
| GCTAGTCGCCGCCGGGAGAC+CGG | + | chr5.2:22498-22517 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 22155 | 22814 | 22155 | ID=MS.gene054810 |
| chr5.2 | mRNA | 22155 | 22814 | 22155 | ID=MS.gene054810.t1;Parent=MS.gene054810 |
| chr5.2 | exon | 22155 | 22814 | 22155 | ID=MS.gene054810.t1.exon1;Parent=MS.gene054810.t1 |
| chr5.2 | CDS | 22155 | 22814 | 22155 | ID=cds.MS.gene054810.t1;Parent=MS.gene054810.t1 |
| Gene Sequence |
| Protein sequence |
