Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054809.t1 | XP_003612915.2 | 98.6 | 218 | 1 | 1 | 1 | 218 | 1 | 216 | 1.10E-117 | 432.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054809.t1 | Q8VZS8 | 66.5 | 209 | 70 | 0 | 4 | 212 | 2 | 210 | 8.2e-77 | 288.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054809.t1 | G7KF38 | 98.6 | 218 | 1 | 1 | 1 | 218 | 1 | 216 | 8.1e-118 | 432.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050133 | MS.gene054809 | 0.810759 | 9.82E-51 | -1.69E-46 |
| MS.gene050426 | MS.gene054809 | 0.803098 | 4.10E-49 | -1.69E-46 |
| MS.gene052469 | MS.gene054809 | -0.809401 | 1.93E-50 | -1.69E-46 |
| MS.gene052795 | MS.gene054809 | 0.802852 | 4.61E-49 | -1.69E-46 |
| MS.gene054809 | MS.gene054810 | 0.959395 | 2.15E-117 | -1.69E-46 |
| MS.gene054809 | MS.gene06354 | 0.800622 | 1.32E-48 | -1.69E-46 |
| MS.gene054809 | MS.gene069194 | 0.832073 | 1.16E-55 | -1.69E-46 |
| MS.gene054809 | MS.gene071223 | -0.822173 | 2.73E-53 | -1.69E-46 |
| MS.gene054809 | MS.gene071439 | 0.805312 | 1.42E-49 | -1.69E-46 |
| MS.gene054809 | MS.gene08872 | 0.800416 | 1.46E-48 | -1.69E-46 |
| MS.gene054809 | MS.gene22251 | -0.802631 | 5.12E-49 | -1.69E-46 |
| MS.gene054809 | MS.gene24091 | 0.808384 | 3.18E-50 | -1.69E-46 |
| MS.gene054809 | MS.gene27107 | 0.807195 | 5.69E-50 | -1.69E-46 |
| MS.gene054809 | MS.gene27426 | -0.802273 | 6.07E-49 | -1.69E-46 |
| MS.gene054809 | MS.gene29775 | -0.814238 | 1.71E-51 | -1.69E-46 |
| MS.gene054809 | MS.gene36260 | -0.818471 | 1.93E-52 | -1.69E-46 |
| MS.gene054809 | MS.gene49436 | -0.80433 | 2.28E-49 | -1.69E-46 |
| MS.gene054809 | MS.gene56071 | -0.80515 | 1.53E-49 | -1.69E-46 |
| MS.gene054809 | MS.gene61544 | -0.821634 | 3.64E-53 | -1.69E-46 |
| MS.gene054809 | MS.gene76087 | -0.802526 | 5.38E-49 | -1.69E-46 |
| MS.gene054809 | MS.gene86339 | -0.818735 | 1.68E-52 | -1.69E-46 |
| MS.gene054809 | MS.gene88938 | 0.818621 | 1.78E-52 | -1.69E-46 |
| MS.gene054809 | MS.gene89074 | -0.80833 | 3.27E-50 | -1.69E-46 |
| MS.gene054809 | MS.gene94217 | -0.830614 | 2.66E-55 | -1.69E-46 |
| MS.gene054809 | MS.gene95677 | 0.836248 | 1.05E-56 | -1.69E-46 |
| MS.gene054809 | MS.gene99506 | 0.824876 | 6.36E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054809.t1 | MTR_5g030500 | 98.624 | 218 | 1 | 1 | 1 | 218 | 1 | 216 | 2.37e-160 | 442 |
| MS.gene054809.t1 | MTR_1g016480 | 55.429 | 175 | 72 | 3 | 33 | 206 | 26 | 195 | 5.66e-66 | 202 |
| MS.gene054809.t1 | MTR_3g071740 | 52.663 | 169 | 74 | 2 | 49 | 217 | 69 | 231 | 4.18e-62 | 193 |
| MS.gene054809.t1 | MTR_5g083270 | 49.505 | 202 | 87 | 5 | 16 | 208 | 8 | 203 | 3.34e-61 | 190 |
| MS.gene054809.t1 | MTR_4g014460 | 54.070 | 172 | 74 | 3 | 41 | 211 | 43 | 210 | 3.14e-56 | 178 |
| MS.gene054809.t1 | MTR_7g070050 | 58.788 | 165 | 65 | 2 | 46 | 208 | 13 | 176 | 3.82e-53 | 169 |
| MS.gene054809.t1 | MTR_8g027805 | 45.856 | 181 | 90 | 4 | 30 | 208 | 1 | 175 | 3.30e-49 | 159 |
| MS.gene054809.t1 | MTR_3g090980 | 48.795 | 166 | 78 | 3 | 45 | 209 | 20 | 179 | 3.45e-49 | 159 |
| MS.gene054809.t1 | MTR_1g028380 | 49.398 | 166 | 77 | 3 | 45 | 209 | 18 | 177 | 7.30e-49 | 158 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054809.t1 | AT5G46790 | 66.507 | 209 | 68 | 1 | 1 | 209 | 1 | 207 | 1.04e-91 | 268 |
| MS.gene054809.t1 | AT5G46790 | 66.507 | 209 | 68 | 1 | 1 | 209 | 1 | 207 | 1.04e-91 | 268 |
| MS.gene054809.t1 | AT4G17870 | 69.149 | 188 | 54 | 2 | 30 | 216 | 1 | 185 | 2.14e-91 | 266 |
| MS.gene054809.t1 | AT2G26040 | 57.558 | 172 | 71 | 2 | 33 | 204 | 9 | 178 | 1.25e-67 | 206 |
| MS.gene054809.t1 | AT1G73000 | 52.432 | 185 | 82 | 3 | 31 | 209 | 22 | 206 | 2.37e-66 | 204 |
| MS.gene054809.t1 | AT5G05440 | 54.938 | 162 | 67 | 2 | 46 | 207 | 45 | 200 | 4.36e-61 | 190 |
| MS.gene054809.t1 | AT2G40330 | 51.534 | 163 | 78 | 1 | 50 | 212 | 52 | 213 | 4.04e-57 | 180 |
| MS.gene054809.t1 | AT2G38310 | 55.952 | 168 | 68 | 1 | 50 | 217 | 43 | 204 | 4.37e-52 | 167 |
| MS.gene054809.t1 | AT4G01026 | 51.250 | 160 | 71 | 3 | 50 | 208 | 27 | 180 | 3.50e-50 | 162 |
| MS.gene054809.t1 | AT5G53160 | 48.780 | 164 | 79 | 2 | 45 | 208 | 18 | 176 | 1.32e-49 | 160 |
| MS.gene054809.t1 | AT1G01360 | 47.305 | 167 | 81 | 3 | 43 | 208 | 18 | 178 | 2.90e-49 | 159 |
| MS.gene054809.t1 | AT4G27920 | 47.879 | 165 | 80 | 3 | 45 | 208 | 13 | 172 | 9.34e-49 | 158 |
| MS.gene054809.t1 | AT5G45860 | 54.000 | 150 | 64 | 2 | 59 | 208 | 10 | 154 | 6.25e-39 | 132 |
| MS.gene054809.t1 | AT5G45870 | 52.667 | 150 | 65 | 2 | 59 | 208 | 10 | 153 | 1.28e-38 | 131 |
| MS.gene054809.t1 | AT4G18620 | 48.408 | 157 | 73 | 3 | 57 | 208 | 7 | 160 | 1.44e-33 | 118 |
| MS.gene054809.t1 | AT5G53160 | 50.485 | 103 | 49 | 1 | 45 | 147 | 18 | 118 | 1.21e-29 | 108 |
Find 72 sgRNAs with CRISPR-Local
Find 75 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTACTTCCGTTCACGGTTT+CGG | 0.321183 | 5.3:+19566127 | MS.gene054809:CDS |
| TGAGATCTGGACCGTTGTTT+TGG | 0.357741 | 5.3:+19566168 | MS.gene054809:CDS |
| GACGACGAACGTCGTGTTAC+CGG | 0.369543 | 5.3:+19566058 | MS.gene054809:CDS |
| CGTTCCGTTACTTCCGTTCA+CGG | 0.394929 | 5.3:+19566121 | MS.gene054809:CDS |
| GGAGGCCGGAGGGGAGTGTT+AGG | 0.404211 | 5.3:-19565754 | None:intergenic |
| TCCTCTTCAGTATTACCTTC+AGG | 0.411978 | 5.3:-19566211 | None:intergenic |
| AGAAGCCTGGAGCATTGGTT+GGG | 0.412638 | 5.3:-19565839 | None:intergenic |
| GTGATAACGGTGGTGAGATC+TGG | 0.416625 | 5.3:+19566155 | MS.gene054809:CDS |
| CTCTCGGTGCTAGTCGCCGC+CGG | 0.416895 | 5.3:-19566022 | None:intergenic |
| ACCGTCACGGTTCTTTCCTT+CGG | 0.424743 | 5.3:-19566293 | None:intergenic |
| TCACACCACACCTACCTCAT+AGG | 0.430563 | 5.3:+19565815 | MS.gene054809:CDS |
| GGTGGAAGCGATGGCGGTGG+AGG | 0.430580 | 5.3:-19565690 | None:intergenic |
| ATGAAGTGTTTGTAGATTTG+CGG | 0.443636 | 5.3:-19565923 | None:intergenic |
| GTCGGAATCTTGATCGGAGG+TGG | 0.456152 | 5.3:-19565708 | None:intergenic |
| ACGCGCCGCCGCAAACCGTC+TGG | 0.474731 | 5.3:+19565876 | MS.gene054809:CDS |
| CAATGTCATCTCCGGTCTCC+CGG | 0.474823 | 5.3:+19566003 | MS.gene054809:CDS |
| GCTAGTCGCCGCCGGGAGAC+CGG | 0.484689 | 5.3:-19566014 | None:intergenic |
| TCCGTTCACGGTTTCGGTGA+CGG | 0.493319 | 5.3:+19566133 | MS.gene054809:CDS |
| ACGACGGACCAGACGGTTTG+CGG | 0.500991 | 5.3:-19565884 | None:intergenic |
| AGACGGTTTGCGGCGGCGCG+TGG | 0.502746 | 5.3:-19565874 | None:intergenic |
| AAAAGCTGCTCTCTCAAAGA+AGG | 0.506128 | 5.3:+19565947 | MS.gene054809:CDS |
| GGAGGTGGAAGCGATGGCGG+TGG | 0.507691 | 5.3:-19565693 | None:intergenic |
| GAGAAGCCTGGAGCATTGGT+TGG | 0.510173 | 5.3:-19565840 | None:intergenic |
| GATGCGTTGAGCGAGAAGCC+TGG | 0.510312 | 5.3:-19565852 | None:intergenic |
| GAAGCCTGGAGCATTGGTTG+GGG | 0.513167 | 5.3:-19565838 | None:intergenic |
| GAGCGAGAAGCCTGGAGCAT+TGG | 0.514906 | 5.3:-19565844 | None:intergenic |
| AGCATTGGTTGGGGCCTATG+AGG | 0.517600 | 5.3:-19565829 | None:intergenic |
| CGCGACGTCAATGTCATCTC+CGG | 0.522159 | 5.3:+19565995 | MS.gene054809:CDS |
| GTCAAGAACGTCGAGTCTCT+CGG | 0.524491 | 5.3:-19566038 | None:intergenic |
| ACCGCCGATGATACTGAAAC+CGG | 0.530952 | 5.3:-19566077 | None:intergenic |
| GGGAGTCGAATTCGTGTTGA+CGG | 0.541010 | 5.3:-19565775 | None:intergenic |
| GGTTTCGGTGACGGTGATAA+CGG | 0.543393 | 5.3:+19566142 | MS.gene054809:CDS |
| TAGGCCCCAACCAATGCTCC+AGG | 0.544690 | 5.3:+19565834 | MS.gene054809:CDS |
| CGGAACGGTAATTCTTCAAA+CGG | 0.546020 | 5.3:-19566105 | None:intergenic |
| GAATTCGTGTTGACGGAGGC+CGG | 0.548211 | 5.3:-19565768 | None:intergenic |
| TTGGTTGGGGCCTATGAGGT+AGG | 0.550389 | 5.3:-19565825 | None:intergenic |
| TTTGCGGTTTGTCGAAGCTA+CGG | 0.554765 | 5.3:-19565907 | None:intergenic |
| ATCGGAGGTGGAAGCGATGG+CGG | 0.560121 | 5.3:-19565696 | None:intergenic |
| TCTCGGTGCTAGTCGCCGCC+GGG | 0.563257 | 5.3:-19566021 | None:intergenic |
| TGTGGTGTGAGTTGATGAAA+GGG | 0.564889 | 5.3:-19565802 | None:intergenic |
| CGTGTTGACGGAGGCCGGAG+GGG | 0.570765 | 5.3:-19565763 | None:intergenic |
| TTGATCGGAGGTGGAAGCGA+TGG | 0.571051 | 5.3:-19565699 | None:intergenic |
| TTCGTGTTGACGGAGGCCGG+AGG | 0.572606 | 5.3:-19565765 | None:intergenic |
| ACCGTCACCGAAACCGTGAA+CGG | 0.574955 | 5.3:-19566134 | None:intergenic |
| TCGTGTTGACGGAGGCCGGA+GGG | 0.581954 | 5.3:-19565764 | None:intergenic |
| TGAGTTGATGAAAGGGATGA+GGG | 0.584437 | 5.3:-19565795 | None:intergenic |
| GAAACCGTGAACGGAAGTAA+CGG | 0.584827 | 5.3:-19566125 | None:intergenic |
| GGAAAGAACCGTGACGGTGA+CGG | 0.588055 | 5.3:+19566298 | MS.gene054809:CDS |
| CTGACTTACCGTCACCGTCA+CGG | 0.588675 | 5.3:-19566306 | None:intergenic |
| CACCACCTAACACTCCCCTC+CGG | 0.591738 | 5.3:+19565749 | MS.gene054809:CDS |
| GTGTTAGGTGGTGTTGTGTG+CGG | 0.591821 | 5.3:-19565739 | None:intergenic |
| TACGTCGTTGATGTTCCTGA+AGG | 0.592427 | 5.3:+19566196 | MS.gene054809:CDS |
| GTGAGTTGATGAAAGGGATG+AGG | 0.592854 | 5.3:-19565796 | None:intergenic |
| TTCGTCGGAATCTTGATCGG+AGG | 0.592857 | 5.3:-19565711 | None:intergenic |
| GTTACCGGTTTCAGTATCAT+CGG | 0.595373 | 5.3:+19566073 | MS.gene054809:CDS |
| GTGTGGTGTGAGTTGATGAA+AGG | 0.597891 | 5.3:-19565803 | None:intergenic |
| TTAGGTGGTGTTGTGTGCGG+TGG | 0.600549 | 5.3:-19565736 | None:intergenic |
| GGCCGGAGGGGAGTGTTAGG+TGG | 0.606358 | 5.3:-19565751 | None:intergenic |
| AAGCTTGCGTCTGTCACCGA+AGG | 0.615885 | 5.3:+19566277 | MS.gene054809:CDS |
| TCCTGAAGGTAATACTGAAG+AGG | 0.617871 | 5.3:+19566210 | MS.gene054809:CDS |
| TGGGGCCTATGAGGTAGGTG+TGG | 0.623679 | 5.3:-19565820 | None:intergenic |
| GCTACGGACGACGGACCAGA+CGG | 0.637251 | 5.3:-19565891 | None:intergenic |
| ACGGACCAGACGGTTTGCGG+CGG | 0.644883 | 5.3:-19565881 | None:intergenic |
| ACCGGTTTCAGTATCATCGG+CGG | 0.669189 | 5.3:+19566076 | MS.gene054809:CDS |
| CTGAAGATTGAGCTTCACAA+CGG | 0.671146 | 5.3:-19566254 | None:intergenic |
| ACCGAAGGAAAGAACCGTGA+CGG | 0.674541 | 5.3:+19566292 | MS.gene054809:CDS |
| AGTCGAATTCGTGTTGACGG+AGG | 0.683583 | 5.3:-19565772 | None:intergenic |
| TTTGTCGAAGCTACGGACGA+CGG | 0.690180 | 5.3:-19565900 | None:intergenic |
| GACGTAAGATTCCAAAACAA+CGG | 0.691402 | 5.3:-19566179 | None:intergenic |
| TTCGGTGACGGTGATAACGG+TGG | 0.691549 | 5.3:+19566145 | MS.gene054809:CDS |
| TGTCATCTCCGGTCTCCCGG+CGG | 0.695228 | 5.3:+19566006 | MS.gene054809:CDS |
| CGTGAACGGAAGTAACGGAA+CGG | 0.712612 | 5.3:-19566120 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ATGAAGTGTTTGTAGATTTG+CGG | - | chr5.3:19565926-19565945 | None:intergenic | 30.0% |
| ! | GAAGGTTTTCAAATGAAAGT+CGG | + | chr5.3:19565965-19565984 | MS.gene054809:CDS | 30.0% |
| GACGTAAGATTCCAAAACAA+CGG | - | chr5.3:19566182-19566201 | None:intergenic | 35.0% | |
| AAAAGCTGCTCTCTCAAAGA+AGG | + | chr5.3:19565947-19565966 | MS.gene054809:CDS | 40.0% | |
| CGGAACGGTAATTCTTCAAA+CGG | - | chr5.3:19566108-19566127 | None:intergenic | 40.0% | |
| CTGAAGATTGAGCTTCACAA+CGG | - | chr5.3:19566257-19566276 | None:intergenic | 40.0% | |
| TCCTCTTCAGTATTACCTTC+AGG | - | chr5.3:19566214-19566233 | None:intergenic | 40.0% | |
| TCCTGAAGGTAATACTGAAG+AGG | + | chr5.3:19566210-19566229 | MS.gene054809:CDS | 40.0% | |
| ! | GTTTTCGTCGGAATCTTGAT+CGG | - | chr5.3:19565717-19565736 | None:intergenic | 40.0% |
| !! | GTTACCGGTTTCAGTATCAT+CGG | + | chr5.3:19566073-19566092 | MS.gene054809:CDS | 40.0% |
| !! | TGAGTTGATGAAAGGGATGA+GGG | - | chr5.3:19565798-19565817 | None:intergenic | 40.0% |
| !! | TGTGGTGTGAGTTGATGAAA+GGG | - | chr5.3:19565805-19565824 | None:intergenic | 40.0% |
| GAAACCGTGAACGGAAGTAA+CGG | - | chr5.3:19566128-19566147 | None:intergenic | 45.0% | |
| GTTACTTCCGTTCACGGTTT+CGG | + | chr5.3:19566127-19566146 | MS.gene054809:CDS | 45.0% | |
| TACGTCGTTGATGTTCCTGA+AGG | + | chr5.3:19566196-19566215 | MS.gene054809:CDS | 45.0% | |
| TTTGCGGTTTGTCGAAGCTA+CGG | - | chr5.3:19565910-19565929 | None:intergenic | 45.0% | |
| ! | TGAGATCTGGACCGTTGTTT+TGG | + | chr5.3:19566168-19566187 | MS.gene054809:CDS | 45.0% |
| !! | GTGAGTTGATGAAAGGGATG+AGG | - | chr5.3:19565799-19565818 | None:intergenic | 45.0% |
| !! | GTGTGGTGTGAGTTGATGAA+AGG | - | chr5.3:19565806-19565825 | None:intergenic | 45.0% |
| ACCGAAGGAAAGAACCGTGA+CGG | + | chr5.3:19566292-19566311 | MS.gene054809:CDS | 50.0% | |
| ACCGCCGATGATACTGAAAC+CGG | - | chr5.3:19566080-19566099 | None:intergenic | 50.0% | |
| ACCGTCACGGTTCTTTCCTT+CGG | - | chr5.3:19566296-19566315 | None:intergenic | 50.0% | |
| CGTTCCGTTACTTCCGTTCA+CGG | + | chr5.3:19566121-19566140 | MS.gene054809:CDS | 50.0% | |
| GGGAGTCGAATTCGTGTTGA+CGG | - | chr5.3:19565778-19565797 | None:intergenic | 50.0% | |
| GTCAAGAACGTCGAGTCTCT+CGG | - | chr5.3:19566041-19566060 | None:intergenic | 50.0% | |
| TCACACCACACCTACCTCAT+AGG | + | chr5.3:19565815-19565834 | MS.gene054809:CDS | 50.0% | |
| TTCGTCGGAATCTTGATCGG+AGG | - | chr5.3:19565714-19565733 | None:intergenic | 50.0% | |
| TTTGTCGAAGCTACGGACGA+CGG | - | chr5.3:19565903-19565922 | None:intergenic | 50.0% | |
| ! | ACCGGTTTCAGTATCATCGG+CGG | + | chr5.3:19566076-19566095 | MS.gene054809:CDS | 50.0% |
| ! | AGTCGAATTCGTGTTGACGG+AGG | - | chr5.3:19565775-19565794 | None:intergenic | 50.0% |
| ! | CGTGAACGGAAGTAACGGAA+CGG | - | chr5.3:19566123-19566142 | None:intergenic | 50.0% |
| ! | GGTTTCGGTGACGGTGATAA+CGG | + | chr5.3:19566142-19566161 | MS.gene054809:CDS | 50.0% |
| ! | TTGTGTGCGGTGGTTTTCGT+CGG | - | chr5.3:19565729-19565748 | None:intergenic | 50.0% |
| !! | AGAAGCCTGGAGCATTGGTT+GGG | - | chr5.3:19565842-19565861 | None:intergenic | 50.0% |
| !! | GTGATAACGGTGGTGAGATC+TGG | + | chr5.3:19566155-19566174 | MS.gene054809:CDS | 50.0% |
| !! | GTGTTAGGTGGTGTTGTGTG+CGG | - | chr5.3:19565742-19565761 | None:intergenic | 50.0% |
| AAGCTTGCGTCTGTCACCGA+AGG | + | chr5.3:19566277-19566296 | MS.gene054809:CDS | 55.0% | |
| ACCGTCACCGAAACCGTGAA+CGG | - | chr5.3:19566137-19566156 | None:intergenic | 55.0% | |
| CAATGTCATCTCCGGTCTCC+CGG | + | chr5.3:19566003-19566022 | MS.gene054809:CDS | 55.0% | |
| CGCGACGTCAATGTCATCTC+CGG | + | chr5.3:19565995-19566014 | MS.gene054809:CDS | 55.0% | |
| CTGACTTACCGTCACCGTCA+CGG | - | chr5.3:19566309-19566328 | None:intergenic | 55.0% | |
| GACGACGAACGTCGTGTTAC+CGG | + | chr5.3:19566058-19566077 | MS.gene054809:CDS | 55.0% | |
| GGAAAGAACCGTGACGGTGA+CGG | + | chr5.3:19566298-19566317 | MS.gene054809:CDS | 55.0% | |
| GTCGGAATCTTGATCGGAGG+TGG | - | chr5.3:19565711-19565730 | None:intergenic | 55.0% | |
| TCCGTTCACGGTTTCGGTGA+CGG | + | chr5.3:19566133-19566152 | MS.gene054809:CDS | 55.0% | |
| TTGATCGGAGGTGGAAGCGA+TGG | - | chr5.3:19565702-19565721 | None:intergenic | 55.0% | |
| TTGGTTGGGGCCTATGAGGT+AGG | - | chr5.3:19565828-19565847 | None:intergenic | 55.0% | |
| ! | GAATTCGTGTTGACGGAGGC+CGG | - | chr5.3:19565771-19565790 | None:intergenic | 55.0% |
| !! | AGCATTGGTTGGGGCCTATG+AGG | - | chr5.3:19565832-19565851 | None:intergenic | 55.0% |
| !! | GAAGCCTGGAGCATTGGTTG+GGG | - | chr5.3:19565841-19565860 | None:intergenic | 55.0% |
| !! | GAGAAGCCTGGAGCATTGGT+TGG | - | chr5.3:19565843-19565862 | None:intergenic | 55.0% |
| !! | TTAGGTGGTGTTGTGTGCGG+TGG | - | chr5.3:19565739-19565758 | None:intergenic | 55.0% |
| !! | TTCGGTGACGGTGATAACGG+TGG | + | chr5.3:19566145-19566164 | MS.gene054809:CDS | 55.0% |
| ACGACGGACCAGACGGTTTG+CGG | - | chr5.3:19565887-19565906 | None:intergenic | 60.0% | |
| ATCGGAGGTGGAAGCGATGG+CGG | - | chr5.3:19565699-19565718 | None:intergenic | 60.0% | |
| CACCACCTAACACTCCCCTC+CGG | + | chr5.3:19565749-19565768 | MS.gene054809:CDS | 60.0% | |
| GAGCGAGAAGCCTGGAGCAT+TGG | - | chr5.3:19565847-19565866 | None:intergenic | 60.0% | |
| GATGCGTTGAGCGAGAAGCC+TGG | - | chr5.3:19565855-19565874 | None:intergenic | 60.0% | |
| TAGGCCCCAACCAATGCTCC+AGG | + | chr5.3:19565834-19565853 | MS.gene054809:CDS | 60.0% | |
| TGGGGCCTATGAGGTAGGTG+TGG | - | chr5.3:19565823-19565842 | None:intergenic | 60.0% | |
| ACGGACCAGACGGTTTGCGG+CGG | - | chr5.3:19565884-19565903 | None:intergenic | 65.0% | |
| GCTACGGACGACGGACCAGA+CGG | - | chr5.3:19565894-19565913 | None:intergenic | 65.0% | |
| TGTCATCTCCGGTCTCCCGG+CGG | + | chr5.3:19566006-19566025 | MS.gene054809:CDS | 65.0% | |
| ! | TCGTGTTGACGGAGGCCGGA+GGG | - | chr5.3:19565767-19565786 | None:intergenic | 65.0% |
| ! | TTCGTGTTGACGGAGGCCGG+AGG | - | chr5.3:19565768-19565787 | None:intergenic | 65.0% |
| ! | CGTGTTGACGGAGGCCGGAG+GGG | - | chr5.3:19565766-19565785 | None:intergenic | 70.0% |
| ! | GGAGGTGGAAGCGATGGCGG+TGG | - | chr5.3:19565696-19565715 | None:intergenic | 70.0% |
| ! | GGTGGAAGCGATGGCGGTGG+AGG | - | chr5.3:19565693-19565712 | None:intergenic | 70.0% |
| !! | CTCTCGGTGCTAGTCGCCGC+CGG | - | chr5.3:19566025-19566044 | None:intergenic | 70.0% |
| !! | GGAGGCCGGAGGGGAGTGTT+AGG | - | chr5.3:19565757-19565776 | None:intergenic | 70.0% |
| !! | GGCCGGAGGGGAGTGTTAGG+TGG | - | chr5.3:19565754-19565773 | None:intergenic | 70.0% |
| !! | TCTCGGTGCTAGTCGCCGCC+GGG | - | chr5.3:19566024-19566043 | None:intergenic | 70.0% |
| ACGCGCCGCCGCAAACCGTC+TGG | + | chr5.3:19565876-19565895 | MS.gene054809:CDS | 75.0% | |
| AGACGGTTTGCGGCGGCGCG+TGG | - | chr5.3:19565877-19565896 | None:intergenic | 75.0% | |
| GCTAGTCGCCGCCGGGAGAC+CGG | - | chr5.3:19566017-19566036 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 19565674 | 19566333 | 19565674 | ID=MS.gene054809 |
| chr5.3 | mRNA | 19565674 | 19566333 | 19565674 | ID=MS.gene054809.t1;Parent=MS.gene054809 |
| chr5.3 | exon | 19565674 | 19566333 | 19565674 | ID=MS.gene054809.t1.exon1;Parent=MS.gene054809.t1 |
| chr5.3 | CDS | 19565674 | 19566333 | 19565674 | ID=cds.MS.gene054809.t1;Parent=MS.gene054809.t1 |
| Gene Sequence |
| Protein sequence |
