AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052135


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052135.t1 MTR_8g100135 49.749 398 193 2 14 404 7 404 1.63e-140 409
MS.gene052135.t1 MTR_8g100135 50.133 375 180 2 14 381 7 381 2.06e-132 386
MS.gene052135.t1 MTR_8g089190 37.467 379 219 8 35 404 1 370 4.63e-83 261
MS.gene052135.t1 MTR_5g092150 35.849 371 236 2 35 404 29 398 8.56e-83 261
MS.gene052135.t1 MTR_3g467140 36.842 399 240 7 13 404 9 402 1.89e-80 255
MS.gene052135.t1 MTR_3g467130 35.638 376 232 5 34 404 32 402 3.26e-78 249
MS.gene052135.t1 MTR_8g089190 37.326 359 207 8 35 384 1 350 9.79e-78 244
MS.gene052135.t1 MTR_5g091760 35.979 378 230 7 32 404 35 405 7.49e-76 243
MS.gene052135.t1 MTR_5g020020 32.500 400 255 9 10 402 11 402 1.68e-57 196
MS.gene052135.t1 MTR_3g467140 38.828 273 159 4 136 404 1 269 2.75e-57 191
MS.gene052135.t1 MTR_7g033040 31.785 409 259 10 1 402 1 396 4.90e-56 191
MS.gene052135.t1 MTR_8g077810 31.899 395 254 10 15 402 13 399 3.96e-54 187
MS.gene052135.t1 MTR_8g072260 30.976 410 259 12 2 404 1 393 6.98e-54 185
MS.gene052135.t1 MTR_8g072260 30.976 410 259 12 2 404 1 393 7.43e-54 185
MS.gene052135.t1 MTR_8g072260 30.976 410 259 12 2 404 1 393 9.48e-54 185
MS.gene052135.t1 MTR_5g025610 32.117 411 251 14 2 404 1 391 3.33e-52 180
MS.gene052135.t1 MTR_5g025610 31.707 410 254 13 2 404 1 391 7.37e-52 179
MS.gene052135.t1 MTR_5g025610 31.707 410 254 13 2 404 1 391 1.23e-51 179
MS.gene052135.t1 MTR_5g082520 28.647 377 252 10 31 402 24 388 2.17e-46 166
MS.gene052135.t1 MTR_5g010750 25.538 372 269 5 35 404 31 396 7.36e-46 164
MS.gene052135.t1 MTR_5g010750 25.538 372 269 5 35 404 31 396 2.94e-45 163
MS.gene052135.t1 MTR_3g070380 29.319 382 253 12 26 402 20 389 4.55e-45 162
MS.gene052135.t1 MTR_4g086130 29.024 379 253 8 30 404 30 396 1.21e-44 161
MS.gene052135.t1 MTR_5g014250 28.710 411 277 10 7 404 10 417 1.79e-43 158
MS.gene052135.t1 MTR_3g007320 27.320 388 245 9 28 402 26 389 1.95e-42 155
MS.gene052135.t1 MTR_8g016180 26.781 407 279 11 5 402 3 399 2.21e-42 154
MS.gene052135.t1 MTR_5g021220 27.595 395 258 11 28 402 28 414 7.58e-42 154
MS.gene052135.t1 MTR_8g016180 26.781 407 279 11 5 402 3 399 7.69e-42 154
MS.gene052135.t1 MTR_8g076510 26.273 373 260 7 36 402 40 403 8.56e-42 153
MS.gene052135.t1 MTR_7g016040 28.982 383 244 13 28 402 26 388 3.06e-41 152
MS.gene052135.t1 MTR_3g112120 27.273 385 259 9 31 404 37 411 8.26e-41 151
MS.gene052135.t1 MTR_1g019410 26.368 402 282 6 9 404 4 397 1.95e-40 150
MS.gene052135.t1 MTR_2g031920 28.647 377 263 5 31 402 37 412 6.06e-40 149
MS.gene052135.t1 MTR_1g037580 28.030 396 270 8 13 404 20 404 1.21e-39 147
MS.gene052135.t1 MTR_6g015910 27.110 391 242 9 28 402 26 389 3.17e-39 146
MS.gene052135.t1 MTR_4g086040 27.851 377 256 8 32 404 35 399 1.26e-38 145
MS.gene052135.t1 MTR_2g031930 26.720 378 273 4 28 402 34 410 2.01e-38 144
MS.gene052135.t1 MTR_6g034940 27.873 409 261 11 13 404 18 409 3.13e-38 144
MS.gene052135.t1 MTR_2g031930 26.720 378 273 4 28 402 38 414 3.71e-38 144
MS.gene052135.t1 MTR_8g089800 26.098 410 289 8 8 404 8 416 8.09e-38 143
MS.gene052135.t1 MTR_0045s0080 29.787 376 238 12 35 402 40 397 1.69e-37 140
MS.gene052135.t1 MTR_8g012970 27.007 411 273 10 12 404 12 413 1.47e-35 136
MS.gene052135.t1 MTR_5g020020 35.102 245 150 5 162 402 89 328 2.54e-34 132
MS.gene052135.t1 MTR_8g076940 25.745 369 263 3 38 402 49 410 2.56e-34 132
MS.gene052135.t1 MTR_8g076940 25.745 369 263 3 38 402 49 410 7.39e-34 132
MS.gene052135.t1 MTR_5g014240 27.805 410 281 9 7 404 10 416 7.90e-34 132
MS.gene052135.t1 MTR_7g016040 29.915 351 212 15 28 367 26 353 1.04e-33 129
MS.gene052135.t1 MTR_6g069000 22.750 400 288 7 13 402 11 399 5.36e-33 129
MS.gene052135.t1 MTR_6g069000 22.750 400 288 7 13 402 21 409 8.72e-33 128
MS.gene052135.t1 MTR_0045s0070 26.146 371 264 6 35 402 40 403 1.38e-32 127
MS.gene052135.t1 MTR_0045s0070 26.146 371 264 6 35 402 40 403 1.59e-32 128
MS.gene052135.t1 MTR_0045s0060 26.344 372 262 8 35 402 40 403 5.73e-32 126
MS.gene052135.t1 MTR_4g005230 26.963 382 270 7 27 404 35 411 6.15e-32 126
MS.gene052135.t1 MTR_1g032950 24.444 405 277 8 13 404 13 401 2.55e-28 116
MS.gene052135.t1 MTR_8g076940 25.000 336 241 3 38 369 49 377 3.27e-26 108
MS.gene052135.t1 MTR_8g076940 25.000 336 241 3 38 369 49 377 3.69e-26 108
MS.gene052135.t1 MTR_0045s0060 25.228 329 237 6 75 402 1 321 5.32e-26 108
MS.gene052135.t1 MTR_1g032980 24.706 340 248 7 28 360 7 345 2.27e-20 92.4
MS.gene052135.t1 MTR_4g029690 24.014 279 202 6 35 310 43 314 4.82e-14 73.2
MS.gene052135.t1 MTR_3g051230 30.769 169 95 6 14 175 1 154 1.09e-13 68.9
MS.gene052135.t1 MTR_8g008530 27.727 220 129 7 200 401 236 443 5.30e-12 67.8
MS.gene052135.t1 MTR_8g006450 22.081 394 268 9 27 402 30 402 2.78e-11 65.5
MS.gene052135.t1 MTR_2g019640 22.335 394 273 11 31 402 37 419 7.20e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052135.t1 AT5G36110 44.920 374 199 2 34 404 33 402 1.05e-111 336
MS.gene052135.t1 AT5G36110 45.014 351 186 2 34 381 33 379 1.49e-103 311
MS.gene052135.t1 AT5G36140 41.137 299 171 2 20 317 17 311 2.23e-79 248
MS.gene052135.t1 AT5G45340 33.498 406 251 9 2 404 1 390 2.30e-66 218
MS.gene052135.t1 AT5G45340 33.498 406 251 9 2 404 1 390 4.65e-66 218
MS.gene052135.t1 AT2G42850 32.902 386 247 7 23 404 34 411 2.56e-63 211
MS.gene052135.t1 AT4G19230 32.832 399 244 9 14 404 8 390 1.05e-61 206
MS.gene052135.t1 AT4G19230 32.832 399 244 9 14 404 8 390 2.17e-61 206
MS.gene052135.t1 AT2G42850 32.418 364 234 7 22 381 33 388 1.86e-55 187
MS.gene052135.t1 AT3G19270 29.500 400 269 7 7 404 6 394 1.17e-50 176
MS.gene052135.t1 AT3G19270 29.500 400 269 7 7 404 6 394 3.25e-50 176
MS.gene052135.t1 AT3G50660 30.576 399 241 9 32 402 36 426 3.16e-49 172
MS.gene052135.t1 AT3G50660 30.576 399 241 9 32 402 36 426 1.48e-48 172
MS.gene052135.t1 AT1G12740 26.882 372 264 6 35 404 31 396 3.01e-48 171
MS.gene052135.t1 AT1G12740 26.455 378 264 7 35 404 31 402 6.81e-46 164
MS.gene052135.t1 AT1G12740 26.190 378 265 7 35 404 31 402 1.85e-45 163
MS.gene052135.t1 AT4G36380 28.302 371 260 5 35 402 69 436 4.66e-45 163
MS.gene052135.t1 AT5G05690 28.763 372 254 7 33 402 29 391 6.82e-45 160
MS.gene052135.t1 AT2G29090 27.441 379 261 7 29 404 43 410 8.11e-45 162
MS.gene052135.t1 AT2G29090 27.441 379 261 7 29 404 43 410 8.11e-45 162
MS.gene052135.t1 AT5G05690 28.763 372 254 7 33 402 29 391 2.96e-44 160
MS.gene052135.t1 AT2G32440 28.642 405 271 8 13 404 15 414 3.22e-44 160
MS.gene052135.t1 AT2G32440 28.642 405 271 8 13 404 15 414 3.22e-44 160
MS.gene052135.t1 AT1G19630 26.146 371 268 6 34 402 34 400 3.27e-42 154
MS.gene052135.t1 AT5G14400 29.189 370 227 9 40 402 1 342 4.55e-42 152
MS.gene052135.t1 AT1G19630 26.146 371 268 6 34 402 34 400 5.51e-42 153
MS.gene052135.t1 AT1G19630 26.146 371 268 6 34 402 34 400 7.51e-42 154
MS.gene052135.t1 AT5G14400 29.189 370 227 9 40 402 1 342 9.38e-42 152
MS.gene052135.t1 AT3G30180 25.743 404 274 10 9 402 3 390 3.64e-40 149
MS.gene052135.t1 AT1G73340 27.387 398 265 7 12 402 19 399 8.07e-40 148
MS.gene052135.t1 AT1G05160 29.067 375 258 7 35 404 45 416 1.63e-39 147
MS.gene052135.t1 AT1G05160 29.067 375 258 7 35 404 45 416 1.63e-39 147
MS.gene052135.t1 AT1G12740 26.331 338 241 6 35 370 31 362 1.69e-39 145
MS.gene052135.t1 AT3G13730 26.203 374 262 8 36 402 52 418 1.90e-38 144
MS.gene052135.t1 AT3G13730 26.133 375 263 8 35 402 51 418 2.26e-38 144
MS.gene052135.t1 AT5G14400 29.290 338 222 8 40 370 1 328 1.15e-37 139
MS.gene052135.t1 AT4G36380 27.679 336 237 5 35 367 69 401 1.17e-36 139
MS.gene052135.t1 AT5G38970 26.225 408 268 12 7 402 4 390 4.05e-35 134
MS.gene052135.t1 AT5G38970 26.225 408 268 12 7 402 4 390 7.91e-35 134
MS.gene052135.t1 AT2G29090 29.197 274 186 4 133 404 48 315 8.83e-35 132
MS.gene052135.t1 AT3G44970 28.198 383 243 11 35 402 35 400 3.31e-31 124
MS.gene052135.t1 AT1G78490 28.906 384 239 14 35 402 35 400 6.33e-31 122
MS.gene052135.t1 AT1G78490 28.906 384 239 14 35 402 35 400 1.74e-30 122
MS.gene052135.t1 AT5G14400 28.025 314 192 8 96 402 2 288 5.23e-29 116
MS.gene052135.t1 AT1G55940 25.132 378 267 11 35 402 45 416 8.76e-27 112
MS.gene052135.t1 AT1G55940 25.132 378 267 11 35 402 45 416 1.05e-26 112
MS.gene052135.t1 AT4G15300 26.064 376 254 11 35 402 35 394 1.34e-26 111
MS.gene052135.t1 AT4G15300 25.134 374 260 9 35 402 25 384 1.48e-26 111
MS.gene052135.t1 AT5G38970 23.397 312 228 6 94 402 6 309 1.03e-25 107
MS.gene052135.t1 AT5G38970 23.397 312 228 6 94 402 6 309 1.03e-25 107
MS.gene052135.t1 AT4G15393 26.133 375 254 12 35 402 35 393 2.76e-25 106
MS.gene052135.t1 AT2G29090 24.567 289 205 6 29 315 43 320 2.98e-25 105
MS.gene052135.t1 AT5G05690 25.899 278 197 5 126 402 3 272 3.16e-25 105
MS.gene052135.t1 AT4G15393 26.133 375 254 12 35 402 35 393 5.40e-25 106
MS.gene052135.t1 AT4G15396 25.464 377 253 11 35 398 35 396 8.23e-25 105
MS.gene052135.t1 AT4G15396 25.131 382 258 11 35 403 35 401 1.73e-24 105
MS.gene052135.t1 AT4G15396 25.464 377 253 11 35 398 35 396 1.77e-24 105
MS.gene052135.t1 AT4G15300 24.872 390 263 11 35 402 25 406 1.20e-23 102
MS.gene052135.t1 AT1G65670 23.971 413 280 12 1 402 1 390 1.23e-22 100
MS.gene052135.t1 AT4G15396 24.642 349 243 8 35 376 35 370 9.46e-21 94.4
MS.gene052135.t1 AT5G36130 52.308 65 31 0 340 404 1 65 6.26e-20 85.9
MS.gene052135.t1 AT4G15310 24.257 404 286 11 7 402 6 397 1.28e-19 90.9
MS.gene052135.t1 AT4G15393 23.118 372 236 9 35 402 35 360 1.41e-19 89.7
MS.gene052135.t1 AT3G44970 27.160 324 204 11 35 343 35 341 3.86e-19 88.6
MS.gene052135.t1 AT3G30290 22.917 336 238 9 74 402 3 324 4.35e-15 77.0
MS.gene052135.t1 AT2G34490 26.351 296 200 10 120 402 121 411 8.83e-15 76.3
MS.gene052135.t1 AT4G37400 30.435 184 117 4 220 401 231 405 1.28e-13 72.8
MS.gene052135.t1 AT4G37320 34.395 157 97 3 248 401 257 410 8.01e-13 70.5
MS.gene052135.t1 AT3G28740 32.639 144 93 2 259 401 278 418 4.95e-12 67.8

Find 78 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGAAATTACTTGCCAAATA+TGG 0.212343 4.3:-12159264 MS.gene052135:CDS
CTTTCCAATGTGTGTTTATA+TGG 0.264138 4.3:+12159225 None:intergenic
AAGTAATTTCTAAGTGTTTC+TGG 0.266492 4.3:+12159275 None:intergenic
TGAGCAATTCTATCCATATT+TGG 0.268527 4.3:+12159251 None:intergenic
GAAAGGTTTGTTACATGAAT+AGG 0.281392 4.3:+12158367 None:intergenic
GAAGAAAAGGAAAGTGGATT+TGG 0.289451 4.3:-12158224 MS.gene052135:CDS
AGCATAGGTGAAATCCTTTA+TGG 0.310654 4.3:+12157638 None:intergenic
AAGGTTGTCTCTTGTTAATA+AGG 0.311020 4.3:-12159348 MS.gene052135:CDS
GGAAATCCTAAGGTTCCTTT+AGG 0.319592 4.3:+12159593 None:intergenic
TAACAAGTAAATGTGATAAA+AGG 0.325476 4.3:+12158173 None:intergenic
GCCTTATGAAACCTTGTTCC+AGG 0.328634 4.3:+12158292 None:intergenic
ACCTTAGGATTTCCATTTGT+TGG 0.331369 4.3:-12159584 MS.gene052135:CDS
TGAAAGCTACAAATGAAATA+AGG 0.357447 4.3:-12158267 MS.gene052135:CDS
GGCTTCGCAATCAACTTTCC+TGG 0.366680 4.3:-12158310 MS.gene052135:CDS
AATGTGTATAGCTGTATTAT+AGG 0.370831 4.3:+12158427 None:intergenic
ATCTTGAGGGAAAGCAAATA+AGG 0.372337 4.3:-12159535 MS.gene052135:CDS
TCATTGGTTATGAAGTATCT+TGG 0.378005 4.3:-12158052 MS.gene052135:CDS
AAAGGTTTGTTACATGAATA+GGG 0.384152 4.3:+12158368 None:intergenic
CGCTTTCAGAGATGCCATAA+AGG 0.396578 4.3:-12157652 MS.gene052135:CDS
GAATTTCTAAAAGGGATCAT+TGG 0.400489 4.3:-12158331 MS.gene052135:CDS
TCAAAGGTTTCTCCAACAAA+TGG 0.410321 4.3:+12159572 None:intergenic
AAAACAAGAATGTTCAAGTA+TGG 0.410480 4.3:-12159397 MS.gene052135:CDS
TCCTGGAACAAGGTTTCATA+AGG 0.411433 4.3:-12158293 MS.gene052135:CDS
AATCTTCCTAAAGGAACCTT+AGG 0.418148 4.3:-12159599 MS.gene052135:CDS
TCCAGAAAATGAAATACTCT+TGG 0.427830 4.3:-12157719 MS.gene052135:CDS
ACTCCCCTGCCTCTTTCCCT+TGG 0.450901 4.3:+12157760 None:intergenic
TTCTAGATCAGTACTATCAT+TGG 0.451944 4.3:-12158068 MS.gene052135:CDS
TTAAAATGATTATGAAGAAA+AGG 0.452233 4.3:-12158237 MS.gene052135:CDS
TTTCTAAAAGCTAATCTTGA+GGG 0.459062 4.3:-12159548 MS.gene052135:CDS
TCTCTGAAAGCGCCACCGAC+AGG 0.468430 4.3:+12157663 None:intergenic
ATGAAGCAAAAGCAACTAGA+AGG 0.475495 4.3:-12159319 MS.gene052135:CDS
TCAGGATTTGAAAACAGTGT+TGG 0.475875 4.3:+12157425 None:intergenic
CTGAGGCTGTCCCCGCCTGT+CGG 0.476524 4.3:-12157678 MS.gene052135:CDS
TGAAATTAGCCAAGGGAAAG+AGG 0.480337 4.3:-12157769 MS.gene052135:CDS
CAATCAACTTTCCTGGAACA+AGG 0.481445 4.3:-12158303 MS.gene052135:CDS
TGAAAGCGCCACCGACAGGC+GGG 0.482966 4.3:+12157667 None:intergenic
TTGTCTCTTGTTAATAAGGT+TGG 0.485068 4.3:-12159344 MS.gene052135:CDS
GCTCAGTGAAGAAGTTGTTA+AGG 0.495990 4.3:-12159367 MS.gene052135:CDS
ATTAGCCAAGGGAAAGAGGC+AGG 0.499684 4.3:-12157765 MS.gene052135:CDS
GGTGTTTATGACAGTTGCAT+TGG 0.503191 4.3:-12157472 MS.gene052135:intron
ATTCTTCAAAATATGATGAA+AGG 0.503401 4.3:+12158350 None:intergenic
GGCAGGGGAGTTATTGCAAT+GGG 0.509314 4.3:-12157748 MS.gene052135:CDS
AGGCTGTCCCCGCCTGTCGG+TGG 0.509526 4.3:-12157675 MS.gene052135:CDS
TCCAACAAATGGAAATCCTA+AGG 0.513579 4.3:+12159583 None:intergenic
AGTGGATTTGGATGAAAAGA+AGG 0.515529 4.3:-12158212 MS.gene052135:CDS
GATTATGAAGAAAAGGAAAG+TGG 0.517025 4.3:-12158230 MS.gene052135:CDS
TTGTGATGAAATGCAAAAGA+AGG 0.522587 4.3:+12159645 None:intergenic
TAGCCAAGGGAAAGAGGCAG+GGG 0.528348 4.3:-12157763 MS.gene052135:CDS
GTTTATGAACAAGTGTTGAA+AGG 0.536878 4.3:-12158016 MS.gene052135:intron
AGAAAGCTTAATCTTCCTAA+AGG 0.544980 4.3:-12159608 MS.gene052135:CDS
AACACTTGTTCATAAACTTG+AGG 0.550446 4.3:+12158022 None:intergenic
AATAAGAACTTGTTCCCAGC+TGG 0.553588 4.3:+12159428 None:intergenic
CTGAAAGCGCCACCGACAGG+CGG 0.557611 4.3:+12157666 None:intergenic
GAAAGCGCCACCGACAGGCG+GGG 0.559653 4.3:+12157668 None:intergenic
CTTGTTACACCTGATACAAG+TGG 0.559763 4.3:-12158157 MS.gene052135:CDS
ATTATAACATCCCTAGTGGA+TGG 0.567013 4.3:-12157614 MS.gene052135:CDS
AACAACTTCTTCACTGAGCT+AGG 0.567202 4.3:+12159371 None:intergenic
GAACAACTTGAAATTAGCCA+AGG 0.578712 4.3:-12157777 MS.gene052135:CDS
ATGTTGCTTCTGAAGTTCTG+AGG 0.584534 4.3:-12157695 MS.gene052135:CDS
ATTTCTAAAAGCTAATCTTG+AGG 0.586722 4.3:-12159549 MS.gene052135:CDS
TAACATCCCTAGTGGATGGA+AGG 0.587209 4.3:-12157610 MS.gene052135:intron
AAACATACCTTCCATCCACT+AGG 0.600198 4.3:+12157603 None:intergenic
AGCACCATATAAACACACAT+TGG 0.601255 4.3:-12159229 MS.gene052135:CDS
ACAAAGAGAGCCAAAACTGT+TGG 0.605657 4.3:+12159668 None:intergenic
ACAAGAATGTTCAAGTATGG+TGG 0.606348 4.3:-12159394 MS.gene052135:CDS
AGGGATGTTATAATCAGCAT+AGG 0.611512 4.3:+12157623 None:intergenic
CATATAAACACACATTGGAA+AGG 0.612746 4.3:-12159224 MS.gene052135:intron
GTACTGATCTAGAAGTGTCA+TGG 0.614010 4.3:+12158077 None:intergenic
AACATACCTTCCATCCACTA+GGG 0.616641 4.3:+12157604 None:intergenic
TTACACCTGATACAAGTGGA+AGG 0.625910 4.3:-12158153 MS.gene052135:CDS
TTATTCATCATAGCTTATGG+AGG 0.631091 4.3:-12159711 None:intergenic
GAACACACATACAACACACA+TGG 0.635289 4.3:-12157450 MS.gene052135:CDS
TTAGCCAAGGGAAAGAGGCA+GGG 0.642507 4.3:-12157764 MS.gene052135:CDS
AACAACTTGAAATTAGCCAA+GGG 0.643857 4.3:-12157776 MS.gene052135:CDS
AGGCAGGGGAGTTATTGCAA+TGG 0.650161 4.3:-12157749 MS.gene052135:CDS
GCTGATTATAACATCCCTAG+TGG 0.655417 4.3:-12157618 MS.gene052135:CDS
TGTGATAAAAGGTCTTGTGT+AGG 0.663837 4.3:+12158184 None:intergenic
AGGGGAGTTATTGCAATGGG+AGG 0.678989 4.3:-12157745 MS.gene052135:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATATATTAGCATATTAT+TGG - chr4.3:12158195-12158214 MS.gene052135:CDS 10.0%
!! TTTGATTAAATTTATGAAAA+TGG - chr4.3:12158109-12158128 MS.gene052135:CDS 10.0%
!! TTAAAATGATTATGAAGAAA+AGG - chr4.3:12158868-12158887 MS.gene052135:intron 15.0%
!! TTTGAACATTAATTTCAATA+TGG - chr4.3:12159126-12159145 MS.gene052135:intron 15.0%
!!! ATTTTGAAGAATTTCTAAAA+GGG - chr4.3:12158766-12158785 MS.gene052135:intron 15.0%
!!! TATTTTGAAGAATTTCTAAA+AGG - chr4.3:12158765-12158784 MS.gene052135:intron 15.0%
!! AAACTTTATTACACATTCAT+CGG - chr4.3:12158545-12158564 MS.gene052135:intron 20.0%
!! AAATTGCAAAAAATAAGAAC+CGG + chr4.3:12158329-12158348 None:intergenic 20.0%
!! ATTCTTCAAAATATGATGAA+AGG + chr4.3:12158758-12158777 None:intergenic 20.0%
!! TAACAAGTAAATGTGATAAA+AGG + chr4.3:12158935-12158954 None:intergenic 20.0%
!! TATAAGAAAAAAAAGCAACA+TGG + chr4.3:12159250-12159269 None:intergenic 20.0%
!!! ATAAAGTTTGACTTTCTTTT+AGG + chr4.3:12158534-12158553 None:intergenic 20.0%
!!! ATTAGCTTTTAGAAATTCAA+AGG + chr4.3:12157552-12157571 None:intergenic 20.0%
!!! ATTTTTGACAAACATCTATA+TGG + chr4.3:12158582-12158601 None:intergenic 20.0%
!!! CTTTTATGAAAAACTTGATT+AGG - chr4.3:12159270-12159289 MS.gene052135:CDS 20.0%
!!! GCTAATTAACACTTTAAAAA+TGG + chr4.3:12158442-12158461 None:intergenic 20.0%
!!! TAAAGTTTGACTTTCTTTTA+GGG + chr4.3:12158533-12158552 None:intergenic 20.0%
!!! TGTTAATTTACACTTTTGAA+GGG - chr4.3:12158634-12158653 MS.gene052135:intron 20.0%
! AAAAACATGCTAGAATCATA+TGG + chr4.3:12158362-12158381 None:intergenic 25.0%
! AAAACAAGAATGTTCAAGTA+TGG - chr4.3:12157708-12157727 MS.gene052135:CDS 25.0%
! AAGTAATTTCTAAGTGTTTC+TGG + chr4.3:12157833-12157852 None:intergenic 25.0%
! AATGTGTATAGCTGTATTAT+AGG + chr4.3:12158681-12158700 None:intergenic 25.0%
! TAGAAATTACTTGCCAAATA+TGG - chr4.3:12157841-12157860 MS.gene052135:intron 25.0%
! TGAAAGCTACAAATGAAATA+AGG - chr4.3:12158838-12158857 MS.gene052135:intron 25.0%
! TTTATAAACACACATTGGAA+AGG - chr4.3:12157993-12158012 MS.gene052135:intron 25.0%
!! ATACTATTACTTCTTTTTGC+TGG - chr4.3:12159005-12159024 MS.gene052135:intron 25.0%
!! ATTTCTAAAAGCTAATCTTG+AGG - chr4.3:12157556-12157575 MS.gene052135:intron 25.0%
!! CTTTGTTTATAAACACACAT+TGG - chr4.3:12157988-12158007 MS.gene052135:intron 25.0%
!! GTGTTAATTTACACTTTTGA+AGG - chr4.3:12158633-12158652 MS.gene052135:intron 25.0%
!! TTTCTAAAAGCTAATCTTGA+GGG - chr4.3:12157557-12157576 MS.gene052135:intron 25.0%
!!! AAAGGTTTGTTACATGAATA+GGG + chr4.3:12158740-12158759 None:intergenic 25.0%
!!! TATTCTAAAGCATGTATGTA+TGG - chr4.3:12159612-12159631 MS.gene052135:CDS 25.0%
!!! TTGTTGCTTATTTTTAAGCA+TGG - chr4.3:12158710-12158729 MS.gene052135:intron 25.0%
AAAATAAGAACCGGTTGAAT+TGG + chr4.3:12158320-12158339 None:intergenic 30.0%
AACAACTTGAAATTAGCCAA+GGG - chr4.3:12159329-12159348 MS.gene052135:CDS 30.0%
AACACTTGTTCATAAACTTG+AGG + chr4.3:12159086-12159105 None:intergenic 30.0%
AAGGTTGTCTCTTGTTAATA+AGG - chr4.3:12157757-12157776 MS.gene052135:CDS 30.0%
AGAAAGCTTAATCTTCCTAA+AGG - chr4.3:12157497-12157516 MS.gene052135:intron 30.0%
CATATAAACACACATTGGAA+AGG - chr4.3:12157881-12157900 MS.gene052135:intron 30.0%
CCATTTAGACATTTAAGTCA+CGG + chr4.3:12158406-12158425 None:intergenic 30.0%
CTATCATGAAATGAAATGCA+AGG + chr4.3:12157954-12157973 None:intergenic 30.0%
CTTTCCAATGTGTGTTTATA+TGG + chr4.3:12157883-12157902 None:intergenic 30.0%
GATTATGAAGAAAAGGAAAG+TGG - chr4.3:12158875-12158894 MS.gene052135:intron 30.0%
TAATTAGCAGATAGTGAGAT+AGG - chr4.3:12158454-12158473 MS.gene052135:intron 30.0%
TCCAGAAAATGAAATACTCT+TGG - chr4.3:12159386-12159405 MS.gene052135:CDS 30.0%
TGAGCAATTCTATCCATATT+TGG + chr4.3:12157857-12157876 None:intergenic 30.0%
TTCTAGATCAGTACTATCAT+TGG - chr4.3:12159037-12159056 MS.gene052135:intron 30.0%
TTGTCTCTTGTTAATAAGGT+TGG - chr4.3:12157761-12157780 MS.gene052135:CDS 30.0%
TTGTGATGAAATGCAAAAGA+AGG + chr4.3:12157463-12157482 None:intergenic 30.0%
TTTGAACAGATTGAACCAAT+TGG - chr4.3:12158379-12158398 MS.gene052135:CDS 30.0%
! AAATTTTCCTCAACAACAAC+TGG + chr4.3:12158136-12158155 None:intergenic 30.0%
! GAATTTCTAAAAGGGATCAT+TGG - chr4.3:12158774-12158793 MS.gene052135:intron 30.0%
! TCATTGGTTATGAAGTATCT+TGG - chr4.3:12159053-12159072 MS.gene052135:intron 30.0%
!! AATTTACACTTTTGAAGGGA+AGG - chr4.3:12158638-12158657 MS.gene052135:intron 30.0%
!! CATAGTTTTACCAACAGTTT+TGG - chr4.3:12157427-12157446 MS.gene052135:CDS 30.0%
!! CTTGAAGCATCAAATTTTTC+AGG + chr4.3:12159701-12159720 None:intergenic 30.0%
!! GAAAGGTTTGTTACATGAAT+AGG + chr4.3:12158741-12158760 None:intergenic 30.0%
!! GTTTATGAACAAGTGTTGAA+AGG - chr4.3:12159089-12159108 MS.gene052135:intron 30.0%
!! GTTTTCAAGACTTCAATGTT+TGG - chr4.3:12157629-12157648 MS.gene052135:CDS 30.0%
!!! TCCAAGAGTATTTCATTTTC+TGG + chr4.3:12159390-12159409 None:intergenic 30.0%
AAAAACCTTCCACTTGTATC+AGG + chr4.3:12158960-12158979 None:intergenic 35.0%
AATCTTCCTAAAGGAACCTT+AGG - chr4.3:12157506-12157525 MS.gene052135:intron 35.0%
ACAAGAATGTTCAAGTATGG+TGG - chr4.3:12157711-12157730 MS.gene052135:CDS 35.0%
ACCTTAGGATTTCCATTTGT+TGG - chr4.3:12157521-12157540 MS.gene052135:intron 35.0%
AGCACCATATAAACACACAT+TGG - chr4.3:12157876-12157895 MS.gene052135:intron 35.0%
AGCATAGGTGAAATCCTTTA+TGG + chr4.3:12159470-12159489 None:intergenic 35.0%
AGGGATGTTATAATCAGCAT+AGG + chr4.3:12159485-12159504 None:intergenic 35.0%
ATCAATCAGTTCCTATGTGT+AGG - chr4.3:12157918-12157937 MS.gene052135:intron 35.0%
ATCTTGAGGGAAAGCAAATA+AGG - chr4.3:12157570-12157589 MS.gene052135:intron 35.0%
ATGAAGCAAAAGCAACTAGA+AGG - chr4.3:12157786-12157805 MS.gene052135:intron 35.0%
ATTATAACATCCCTAGTGGA+TGG - chr4.3:12159491-12159510 MS.gene052135:CDS 35.0%
CCGTGACTTAAATGTCTAAA+TGG - chr4.3:12158403-12158422 MS.gene052135:CDS 35.0%
CTCTCTCTAACATGATTGAA+AGG + chr4.3:12158166-12158185 None:intergenic 35.0%
GAACAACTTGAAATTAGCCA+AGG - chr4.3:12159328-12159347 MS.gene052135:CDS 35.0%
TCAAAGGTTTCTCCAACAAA+TGG + chr4.3:12157536-12157555 None:intergenic 35.0%
TCAGGATTTGAAAACAGTGT+TGG + chr4.3:12159683-12159702 None:intergenic 35.0%
TCCAACAAATGGAAATCCTA+AGG + chr4.3:12157525-12157544 None:intergenic 35.0%
! AGTGGATTTGGATGAAAAGA+AGG - chr4.3:12158893-12158912 MS.gene052135:intron 35.0%
! GAAGAAAAGGAAAGTGGATT+TGG - chr4.3:12158881-12158900 MS.gene052135:intron 35.0%
! GAGAATATTGCTGTGTTTTG+TGG - chr4.3:12157653-12157672 MS.gene052135:CDS 35.0%
! TGGAAGGTTTTTGAATGAAG+TGG - chr4.3:12158968-12158987 MS.gene052135:intron 35.0%
! TGTGATAAAAGGTCTTGTGT+AGG + chr4.3:12158924-12158943 None:intergenic 35.0%
AAACATACCTTCCATCCACT+AGG + chr4.3:12159505-12159524 None:intergenic 40.0%
AACAACTTCTTCACTGAGCT+AGG + chr4.3:12157737-12157756 None:intergenic 40.0%
AACATACCTTCCATCCACTA+GGG + chr4.3:12159504-12159523 None:intergenic 40.0%
ACAAAGAGAGCCAAAACTGT+TGG + chr4.3:12157440-12157459 None:intergenic 40.0%
CAATCAACTTTCCTGGAACA+AGG - chr4.3:12158802-12158821 MS.gene052135:intron 40.0%
CAATTCAACTCGAAATCAGC+TGG - chr4.3:12158250-12158269 MS.gene052135:CDS 40.0%
CATTTAAGTCACGGTCCAAT+TGG + chr4.3:12158397-12158416 None:intergenic 40.0%
CTTGTTACACCTGATACAAG+TGG - chr4.3:12158948-12158967 MS.gene052135:intron 40.0%
GAACACACATACAACACACA+TGG - chr4.3:12159655-12159674 MS.gene052135:CDS 40.0%
GCTCAGTGAAGAAGTTGTTA+AGG - chr4.3:12157738-12157757 MS.gene052135:CDS 40.0%
GCTGATTATAACATCCCTAG+TGG - chr4.3:12159487-12159506 MS.gene052135:CDS 40.0%
GGAAATCCTAAGGTTCCTTT+AGG + chr4.3:12157515-12157534 None:intergenic 40.0%
GGTGTTTATGACAGTTGCAT+TGG - chr4.3:12159633-12159652 MS.gene052135:CDS 40.0%
TCCTGGAACAAGGTTTCATA+AGG - chr4.3:12158812-12158831 MS.gene052135:intron 40.0%
TGAAATTAGCCAAGGGAAAG+AGG - chr4.3:12159336-12159355 MS.gene052135:CDS 40.0%
TTACACCTGATACAAGTGGA+AGG - chr4.3:12158952-12158971 MS.gene052135:intron 40.0%
! AAATGGTCCAGTTGTTGTTG+AGG - chr4.3:12158126-12158145 MS.gene052135:CDS 40.0%
! AATAAGAACTTGTTCCCAGC+TGG + chr4.3:12157680-12157699 None:intergenic 40.0%
! ATTCTGGCTATACTTTAGCC+GGG - chr4.3:12158289-12158308 MS.gene052135:CDS 40.0%
! GATTCTGGCTATACTTTAGC+CGG - chr4.3:12158288-12158307 MS.gene052135:CDS 40.0%
!! ATGTTGCTTCTGAAGTTCTG+AGG - chr4.3:12159410-12159429 MS.gene052135:CDS 40.0%
!! CAGCTGATTTCGAGTTGAAT+TGG + chr4.3:12158252-12158271 None:intergenic 40.0%
!! GTACTGATCTAGAAGTGTCA+TGG + chr4.3:12159031-12159050 None:intergenic 40.0%
!! TGATTTCGAGTTGAATTGGC+TGG + chr4.3:12158248-12158267 None:intergenic 40.0%
!! TTCGCTTGTTGGTTTGATTC+TGG - chr4.3:12158273-12158292 MS.gene052135:CDS 40.0%
CAGTTCCTATGTGTAGGACA+AGG - chr4.3:12157924-12157943 MS.gene052135:intron 45.0%
CGCTTTCAGAGATGCCATAA+AGG - chr4.3:12159453-12159472 MS.gene052135:CDS 45.0%
GAACACCTTGTCCTACACAT+AGG + chr4.3:12157932-12157951 None:intergenic 45.0%
GCCTTATGAAACCTTGTTCC+AGG + chr4.3:12158816-12158835 None:intergenic 45.0%
TACTTGAGGTCGGAACACAA+GGG - chr4.3:12159193-12159212 MS.gene052135:intron 45.0%
! TAACATCCCTAGTGGATGGA+AGG - chr4.3:12159495-12159514 MS.gene052135:CDS 45.0%
!! AAAACAGTGCAGCTGACTTG+AGG + chr4.3:12159157-12159176 None:intergenic 45.0%
!! AAATCAGCTGGTTCGCTTGT+TGG - chr4.3:12158262-12158281 MS.gene052135:CDS 45.0%
AGGCAGGGGAGTTATTGCAA+TGG - chr4.3:12159356-12159375 MS.gene052135:CDS 50.0%
AGGGGAGTTATTGCAATGGG+AGG - chr4.3:12159360-12159379 MS.gene052135:CDS 50.0%
ATTAGCCAAGGGAAAGAGGC+AGG - chr4.3:12159340-12159359 MS.gene052135:CDS 50.0%
CACTGCAACGTACTTGAGGT+CGG - chr4.3:12159183-12159202 MS.gene052135:intron 50.0%
GGCAGGGGAGTTATTGCAAT+GGG - chr4.3:12159357-12159376 MS.gene052135:CDS 50.0%
GGCTTCGCAATCAACTTTCC+TGG - chr4.3:12158795-12158814 MS.gene052135:intron 50.0%
GTACTTGAGGTCGGAACACA+AGG - chr4.3:12159192-12159211 MS.gene052135:intron 50.0%
TTAGCCAAGGGAAAGAGGCA+GGG - chr4.3:12159341-12159360 MS.gene052135:CDS 50.0%
! CCGGGTTGAACCAATTCAAC+CGG - chr4.3:12158307-12158326 MS.gene052135:CDS 50.0%
! CCGGTTGAATTGGTTCAACC+CGG + chr4.3:12158310-12158329 None:intergenic 50.0%
! CTGTGTTTTGTGGACCAGCT+GGG - chr4.3:12157663-12157682 MS.gene052135:CDS 50.0%
CGTGCACTGCAACGTACTTG+AGG - chr4.3:12159179-12159198 MS.gene052135:intron 55.0%
TAGCCAAGGGAAAGAGGCAG+GGG - chr4.3:12159342-12159361 MS.gene052135:CDS 55.0%
! GCTGTGTTTTGTGGACCAGC+TGG - chr4.3:12157662-12157681 MS.gene052135:CDS 55.0%
!! CAGTGCAGCTGACTTGAGGT+CGG + chr4.3:12159153-12159172 None:intergenic 55.0%
ACTCCCCTGCCTCTTTCCCT+TGG + chr4.3:12159348-12159367 None:intergenic 60.0%
!! TCTCTGAAAGCGCCACCGAC+AGG + chr4.3:12159445-12159464 None:intergenic 60.0%
!! CTGAAAGCGCCACCGACAGG+CGG + chr4.3:12159442-12159461 None:intergenic 65.0%
!! TGAAAGCGCCACCGACAGGC+GGG + chr4.3:12159441-12159460 None:intergenic 65.0%
CTGAGGCTGTCCCCGCCTGT+CGG - chr4.3:12159427-12159446 MS.gene052135:CDS 70.0%
!! GAAAGCGCCACCGACAGGCG+GGG + chr4.3:12159440-12159459 None:intergenic 70.0%
AGGCTGTCCCCGCCTGTCGG+TGG - chr4.3:12159430-12159449 MS.gene052135:CDS 75.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 12157407 12159720 12157407 ID=MS.gene052135
chr4.3 mRNA 12157407 12159720 12157407 ID=MS.gene052135.t1;Parent=MS.gene052135
chr4.3 exon 12159225 12159720 12159225 ID=MS.gene052135.t1.exon1;Parent=MS.gene052135.t1
chr4.3 CDS 12159225 12159720 12159225 ID=cds.MS.gene052135.t1;Parent=MS.gene052135.t1
chr4.3 exon 12158017 12158472 12158017 ID=MS.gene052135.t1.exon2;Parent=MS.gene052135.t1
chr4.3 CDS 12158017 12158472 12158017 ID=cds.MS.gene052135.t1;Parent=MS.gene052135.t1
chr4.3 exon 12157611 12157798 12157611 ID=MS.gene052135.t1.exon3;Parent=MS.gene052135.t1
chr4.3 CDS 12157611 12157798 12157611 ID=cds.MS.gene052135.t1;Parent=MS.gene052135.t1
chr4.3 exon 12157407 12157480 12157407 ID=MS.gene052135.t1.exon4;Parent=MS.gene052135.t1
chr4.3 CDS 12157407 12157480 12157407 ID=cds.MS.gene052135.t1;Parent=MS.gene052135.t1
Gene Sequence

>MS.gene052135

CTTATGGAGGTGACAAAGCTCATAGTTTTACCAACAGTTTTGGCTCTCTTTGTCCTTCTTTTGCATTTCATCACAAGAATTATCAAACTCAGAAAGCTTAATCTTCCTAAAGGAACCTTAGGATTTCCATTTGTTGGAGAAACCTTTGAATTTCTAAAAGCTAATCTTGAGGGAAAGCAAATAAGGTTCATACAAGAGAGAATGAAGAAATATGACTCAAAAGTTTTCAAGACTTCAATGTTTGGAGAGAATATTGCTGTGTTTTGTGGACCAGCTGGGAACAAGTTCTTATTTAGCAATGAAAACAAGAATGTTCAAGTATGGTGGCCTAGCTCAGTGAAGAAGTTGTTAAGGTTGTCTCTTGTTAATAAGGTTGGTGATGAAGCAAAAGCAACTAGAAGGTTGCTTATGAGTTTTCTTAATCCAGAAACACTTAGAAATTACTTGCCAAATATGGATAGAATTGCTCAGCACCATATAAACACACATTGGAAAGGTAAGAAATTTTGTGATCAATCAGTTCCTATGTGTAGGACAAGGTGTTCCTTGCATTTCATTTCATGATAGTTTGTGAATTATTACTTTGTTTATAAACACACATTGGAAAGGTAAGAAATTTTGTGATCAATCAGTTCCTATGTGTAGGACAAGGTGTTCCTTGCATTTCATTTCATGATAGTTTGTGAATTATTACTTTGTTTTTTTGATTAAATTTATGAAAATGGTCCAGTTGTTGTTGAGGAAAATTTCAACGCTCCTTTCAATCATGTTAGAGAGAGAAGCACTGTTTTATATATTAGCATATTATTGGCAGCAATGTTTTAAAAATCGAACTGAACCAGCCAATTCAACTCGAAATCAGCTGGTTCGCTTGTTGGTTTGATTCTGGCTATACTTTAGCCGGGTTGAACCAATTCAACCGGTTCTTATTTTTTGCAATTTTTTTTACTTACCATATGATTCTAGCATGTTTTTGAACAGATTGAACCAATTGGACCGTGACTTAAATGTCTAAATGGTTCAATCTTCGAACCATTTTTAAAGTGTTAATTAGCAGATAGTGAGATAGGTACATGACATAAAAGTTCTTACAACAGCTAGAAACTATTGTTTTTCACATTTACCCTAAAAGAAAGTCAAACTTTATTACACATTCATCGGATCGCATTTCACCATATAGATGTTTGTCAAAAATAAAAAAGAATGTTATGATCAAAGTTTAATATGTGTTAATTTACACTTTTGAAGGGAAGGAGCAAGTTGTTGTCTATCCTATAATACAGCTATACACATTTGAATTAGCTTGTTGCTTATTTTTAAGCATGGAAGACCCTATTCATGTAACAAACCTTTCATCATATTTTGAAGAATTTCTAAAAGGGATCATTGGCTTCGCAATCAACTTTCCTGGAACAAGGTTTCATAAGGCAATGAAAGCTACAAATGAAATAAGGAAAGAAATTAAAATGATTATGAAGAAAAGGAAAGTGGATTTGGATGAAAAGAAGGCATCACCTACACAAGACCTTTTATCACATTTACTTGTTACACCTGATACAAGTGGAAGGTTTTTGAATGAAGTGGAGATTATTGATAACATACTATTACTTCTTTTTGCTGGCCATGACACTTCTAGATCAGTACTATCATTGGTTATGAAGTATCTTGGAAATTTGCCTCAAGTTTATGAACAAGTGTTGAAAGGTTTGAAGTAAAGTCTTTGAACATTAATTTCAATATGGTCCGACCTCAAGTCAGCTGCACTGTTTTTTCGTGCACTGCAACGTACTTGAGGTCGGAACACAAGGGAATTTGATTATATAATGAAAATTTTATAGCACCATGTTGCTTTTTTTTCTTATACTTTTATGAAAAACTTGATTAGGATAAATGTTGAAATTGTTTTTTCTTTTTTATGACAGAACAACTTGAAATTAGCCAAGGGAAAGAGGCAGGGGAGTTATTGCAATGGGAGGATATCCAGAAAATGAAATACTCTTGGAATGTTGCTTCTGAAGTTCTGAGGCTGTCCCCGCCTGTCGGTGGCGCTTTCAGAGATGCCATAAAGGATTTCACCTATGCTGATTATAACATCCCTAGTGGATGGAAGGTATGTTTCTTGTTTAACTTAATCTTATTTCAAGTATTTTTCTTTAATCTAATTCAATATACATGTATGTTGATTATTTCATATATATATATATATATTCTAAAGCATGTATGTATGGTGTTTATGACAGTTGCATTGGAACACACATACAACACACATGGATCCAACACTGTTTTCAAATCCTGAAAAATTTGATGCTTCAAG

Protein sequence

>MS.gene052135.t1

LMEVTKLIVLPTVLALFVLLLHFITRIIKLRKLNLPKGTLGFPFVGETFEFLKANLEGKQIRFIQERMKKYDSKVFKTSMFGENIAVFCGPAGNKFLFSNENKNVQVWWPSSVKKLLRLSLVNKVGDEAKATRRLLMSFLNPETLRNYLPNMDRIAQHHINTHWKGKEQVVVYPIIQLYTFELACCLFLSMEDPIHVTNLSSYFEEFLKGIIGFAINFPGTRFHKAMKATNEIRKEIKMIMKKRKVDLDEKKASPTQDLLSHLLVTPDTSGRFLNEVEIIDNILLLLFAGHDTSRSVLSLVMKYLGNLPQVYEQVLKEQLEISQGKEAGELLQWEDIQKMKYSWNVASEVLRLSPPVGGAFRDAIKDFTYADYNIPSGWKLHWNTHTTHMDPTLFSNPEKFDAS