AlfalfaGEDB | MS.gene052135

M. sativa cultivar XinJiangDaYe / MS.gene052135

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0008150 GO:0008152 GO:0016491 GO:0016705 GO:0020037 GO:0043167 GO:0043169 GO:0046872 GO:0046906 GO:0046914 GO:0048037 GO:0055114 GO:0097159 GO:1901363
PFAM: PF00067.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052135.t1	XP_024628198.1	97	403	12	0	2	404	1	403	1.10E-222	782.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052135.t1	A5BFI4	52.0	369	177	0	34	402	35	403	1.9e-111	404.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052135.t1	A0A396GRG8	97.0	403	12	0	2	404	1	403	7.6e-223	782.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049149	MS.gene052135	0.80028	1.55E-48	-1.69E-46
MS.gene050060	MS.gene052135	0.807806	4.22E-50	-1.69E-46
MS.gene050426	MS.gene052135	-0.850735	1.40E-60	-1.69E-46
MS.gene050529	MS.gene052135	0.803659	3.14E-49	-1.69E-46
MS.gene050670	MS.gene052135	0.823698	1.20E-53	-1.69E-46
MS.gene05105	MS.gene052135	0.8036	3.23E-49	-1.69E-46
MS.gene051525	MS.gene052135	0.849513	3.08E-60	-1.69E-46
MS.gene051838	MS.gene052135	0.807549	4.79E-50	-1.69E-46
MS.gene052011	MS.gene052135	-0.833306	5.75E-56	-1.69E-46
MS.gene052077	MS.gene052135	0.812327	4.48E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052135.t1	MTR_8g100135	49.749	398	193	2	14	404	7	404	1.63e-140	409
MS.gene052135.t1	MTR_8g100135	50.133	375	180	2	14	381	7	381	2.06e-132	386
MS.gene052135.t1	MTR_8g089190	37.467	379	219	8	35	404	1	370	4.63e-83	261
MS.gene052135.t1	MTR_5g092150	35.849	371	236	2	35	404	29	398	8.56e-83	261
MS.gene052135.t1	MTR_3g467140	36.842	399	240	7	13	404	9	402	1.89e-80	255
MS.gene052135.t1	MTR_3g467130	35.638	376	232	5	34	404	32	402	3.26e-78	249
MS.gene052135.t1	MTR_8g089190	37.326	359	207	8	35	384	1	350	9.79e-78	244
MS.gene052135.t1	MTR_5g091760	35.979	378	230	7	32	404	35	405	7.49e-76	243
MS.gene052135.t1	MTR_5g020020	32.500	400	255	9	10	402	11	402	1.68e-57	196
MS.gene052135.t1	MTR_3g467140	38.828	273	159	4	136	404	1	269	2.75e-57	191

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052135.t1	AT5G36110	44.920	374	199	2	34	404	33	402	1.05e-111	336
MS.gene052135.t1	AT5G36110	45.014	351	186	2	34	381	33	379	1.49e-103	311
MS.gene052135.t1	AT5G36140	41.137	299	171	2	20	317	17	311	2.23e-79	248
MS.gene052135.t1	AT5G45340	33.498	406	251	9	2	404	1	390	2.30e-66	218
MS.gene052135.t1	AT5G45340	33.498	406	251	9	2	404	1	390	4.65e-66	218
MS.gene052135.t1	AT2G42850	32.902	386	247	7	23	404	34	411	2.56e-63	211
MS.gene052135.t1	AT4G19230	32.832	399	244	9	14	404	8	390	1.05e-61	206
MS.gene052135.t1	AT4G19230	32.832	399	244	9	14	404	8	390	2.17e-61	206
MS.gene052135.t1	AT2G42850	32.418	364	234	7	22	381	33	388	1.86e-55	187
MS.gene052135.t1	AT3G19270	29.500	400	269	7	7	404	6	394	1.17e-50	176

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Find 78 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAGAATGTTCAAGTA+TGG	0.410480	4.3:-12159397	MS.gene052135:CDS
AAACATACCTTCCATCCACT+AGG	0.600198	4.3:+12157603	None:intergenic
AAAGGTTTGTTACATGAATA+GGG	0.384152	4.3:+12158368	None:intergenic
AACAACTTCTTCACTGAGCT+AGG	0.567202	4.3:+12159371	None:intergenic
AACAACTTGAAATTAGCCAA+GGG	0.643857	4.3:-12157776	MS.gene052135:CDS
AACACTTGTTCATAAACTTG+AGG	0.550446	4.3:+12158022	None:intergenic
AACATACCTTCCATCCACTA+GGG	0.616641	4.3:+12157604	None:intergenic
AAGGTTGTCTCTTGTTAATA+AGG	0.311020	4.3:-12159348	MS.gene052135:CDS
AAGTAATTTCTAAGTGTTTC+TGG	0.266492	4.3:+12159275	None:intergenic
AATAAGAACTTGTTCCCAGC+TGG	0.553588	4.3:+12159428	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATAAGAACCGGTTGAAT+TGG	+	chr4.3:12158320-12158339	None:intergenic	30.0%
AACAACTTGAAATTAGCCAA+GGG	-	chr4.3:12159329-12159348	MS.gene052135:CDS	30.0%
AACACTTGTTCATAAACTTG+AGG	+	chr4.3:12159086-12159105	None:intergenic	30.0%
AAGGTTGTCTCTTGTTAATA+AGG	-	chr4.3:12157757-12157776	MS.gene052135:CDS	30.0%
AGAAAGCTTAATCTTCCTAA+AGG	-	chr4.3:12157497-12157516	MS.gene052135:intron	30.0%
CATATAAACACACATTGGAA+AGG	-	chr4.3:12157881-12157900	MS.gene052135:intron	30.0%
CCATTTAGACATTTAAGTCA+CGG	+	chr4.3:12158406-12158425	None:intergenic	30.0%
CTATCATGAAATGAAATGCA+AGG	+	chr4.3:12157954-12157973	None:intergenic	30.0%
CTTTCCAATGTGTGTTTATA+TGG	+	chr4.3:12157883-12157902	None:intergenic	30.0%
GATTATGAAGAAAAGGAAAG+TGG	-	chr4.3:12158875-12158894	MS.gene052135:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	12157407	12159720	12157407	ID=MS.gene052135
chr4.3	mRNA	12157407	12159720	12157407	ID=MS.gene052135.t1;Parent=MS.gene052135
chr4.3	exon	12159225	12159720	12159225	ID=MS.gene052135.t1.exon1;Parent=MS.gene052135.t1
chr4.3	CDS	12159225	12159720	12159225	ID=cds.MS.gene052135.t1;Parent=MS.gene052135.t1
chr4.3	exon	12158017	12158472	12158017	ID=MS.gene052135.t1.exon2;Parent=MS.gene052135.t1
chr4.3	CDS	12158017	12158472	12158017	ID=cds.MS.gene052135.t1;Parent=MS.gene052135.t1
chr4.3	exon	12157611	12157798	12157611	ID=MS.gene052135.t1.exon3;Parent=MS.gene052135.t1
chr4.3	CDS	12157611	12157798	12157611	ID=cds.MS.gene052135.t1;Parent=MS.gene052135.t1
chr4.3	exon	12157407	12157480	12157407	ID=MS.gene052135.t1.exon4;Parent=MS.gene052135.t1
chr4.3	CDS	12157407	12157480	12157407	ID=cds.MS.gene052135.t1;Parent=MS.gene052135.t1

Gene Sequence

>MS.gene052135

CTTATGGAGGTGACAAAGCTCATAGTTTTACCAACAGTTTTGGCTCTCTTTGTCCTTCTTTTGCATTTCATCACAAGAATTATCAAACTCAGAAAGCTTAATCTTCCTAAAGGAACCTTAGGATTTCCATTTGTTGGAGAAACCTTTGAATTTCTAAAAGCTAATCTTGAGGGAAAGCAAATAAGGTTCATACAAGAGAGAATGAAGAAATATGACTCAAAAGTTTTCAAGACTTCAATGTTTGGAGAGAATATTGCTGTGTTTTGTGGACCAGCTGGGAACAAGTTCTTATTTAGCAATGAAAACAAGAATGTTCAAGTATGGTGGCCTAGCTCAGTGAAGAAGTTGTTAAGGTTGTCTCTTGTTAATAAGGTTGGTGATGAAGCAAAAGCAACTAGAAGGTTGCTTATGAGTTTTCTTAATCCAGAAACACTTAGAAATTACTTGCCAAATATGGATAGAATTGCTCAGCACCATATAAACACACATTGGAAAGGTAAGAAATTTTGTGATCAATCAGTTCCTATGTGTAGGACAAGGTGTTCCTTGCATTTCATTTCATGATAGTTTGTGAATTATTACTTTGTTTATAAACACACATTGGAAAGGTAAGAAATTTTGTGATCAATCAGTTCCTATGTGTAGGACAAGGTGTTCCTTGCATTTCATTTCATGATAGTTTGTGAATTATTACTTTGTTTTTTTGATTAAATTTATGAAAATGGTCCAGTTGTTGTTGAGGAAAATTTCAACGCTCCTTTCAATCATGTTAGAGAGAGAAGCACTGTTTTATATATTAGCATATTATTGGCAGCAATGTTTTAAAAATCGAACTGAACCAGCCAATTCAACTCGAAATCAGCTGGTTCGCTTGTTGGTTTGATTCTGGCTATACTTTAGCCGGGTTGAACCAATTCAACCGGTTCTTATTTTTTGCAATTTTTTTTACTTACCATATGATTCTAGCATGTTTTTGAACAGATTGAACCAATTGGACCGTGACTTAAATGTCTAAATGGTTCAATCTTCGAACCATTTTTAAAGTGTTAATTAGCAGATAGTGAGATAGGTACATGACATAAAAGTTCTTACAACAGCTAGAAACTATTGTTTTTCACATTTACCCTAAAAGAAAGTCAAACTTTATTACACATTCATCGGATCGCATTTCACCATATAGATGTTTGTCAAAAATAAAAAAGAATGTTATGATCAAAGTTTAATATGTGTTAATTTACACTTTTGAAGGGAAGGAGCAAGTTGTTGTCTATCCTATAATACAGCTATACACATTTGAATTAGCTTGTTGCTTATTTTTAAGCATGGAAGACCCTATTCATGTAACAAACCTTTCATCATATTTTGAAGAATTTCTAAAAGGGATCATTGGCTTCGCAATCAACTTTCCTGGAACAAGGTTTCATAAGGCAATGAAAGCTACAAATGAAATAAGGAAAGAAATTAAAATGATTATGAAGAAAAGGAAAGTGGATTTGGATGAAAAGAAGGCATCACCTACACAAGACCTTTTATCACATTTACTTGTTACACCTGATACAAGTGGAAGGTTTTTGAATGAAGTGGAGATTATTGATAACATACTATTACTTCTTTTTGCTGGCCATGACACTTCTAGATCAGTACTATCATTGGTTATGAAGTATCTTGGAAATTTGCCTCAAGTTTATGAACAAGTGTTGAAAGGTTTGAAGTAAAGTCTTTGAACATTAATTTCAATATGGTCCGACCTCAAGTCAGCTGCACTGTTTTTTCGTGCACTGCAACGTACTTGAGGTCGGAACACAAGGGAATTTGATTATATAATGAAAATTTTATAGCACCATGTTGCTTTTTTTTCTTATACTTTTATGAAAAACTTGATTAGGATAAATGTTGAAATTGTTTTTTCTTTTTTATGACAGAACAACTTGAAATTAGCCAAGGGAAAGAGGCAGGGGAGTTATTGCAATGGGAGGATATCCAGAAAATGAAATACTCTTGGAATGTTGCTTCTGAAGTTCTGAGGCTGTCCCCGCCTGTCGGTGGCGCTTTCAGAGATGCCATAAAGGATTTCACCTATGCTGATTATAACATCCCTAGTGGATGGAAGGTATGTTTCTTGTTTAACTTAATCTTATTTCAAGTATTTTTCTTTAATCTAATTCAATATACATGTATGTTGATTATTTCATATATATATATATATATTCTAAAGCATGTATGTATGGTGTTTATGACAGTTGCATTGGAACACACATACAACACACATGGATCCAACACTGTTTTCAAATCCTGAAAAATTTGATGCTTCAAG

Protein sequence

>MS.gene052135.t1

LMEVTKLIVLPTVLALFVLLLHFITRIIKLRKLNLPKGTLGFPFVGETFEFLKANLEGKQIRFIQERMKKYDSKVFKTSMFGENIAVFCGPAGNKFLFSNENKNVQVWWPSSVKKLLRLSLVNKVGDEAKATRRLLMSFLNPETLRNYLPNMDRIAQHHINTHWKGKEQVVVYPIIQLYTFELACCLFLSMEDPIHVTNLSSYFEEFLKGIIGFAINFPGTRFHKAMKATNEIRKEIKMIMKKRKVDLDEKKASPTQDLLSHLLVTPDTSGRFLNEVEIIDNILLLLFAGHDTSRSVLSLVMKYLGNLPQVYEQVLKEQLEISQGKEAGELLQWEDIQKMKYSWNVASEVLRLSPPVGGAFRDAIKDFTYADYNIPSGWKLHWNTHTTHMDPTLFSNPEKFDAS